Pregenerated sensors for WDR5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034379Ensembl transcript IDs: ENSMUST00000042203.10
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATAAGAAGCCAGGGTGTCTTTGTGAAGGCTGGCTCCCCATGCACTaGATGGTCTGGCATGGCAGTAGGCAGAGGCATTTTGAAGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: DKKPGCLCEGWLPMH*MVWHGSRQRHFEEP Trigger: AGGCTCTTCAAAATGCCTCTGCCTACTGCCATGCCAGACCATTCAGTGCATGGGGAGCCAGCCTTCACAAAGACACCCTGGCTTCTTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 90 bp | CCCTTAATGACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTaGGTCATCCTGTTGTGTCACCTTTCCAGATATTCCAAAAACCTT | + |
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Preference number: 1 (lower is better) Translates to: PLMTSQTRGYTSLLP*VILLCHLSRYSKNL Trigger: AAGGTTTTTGGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGTCATTAAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR GCA 90 bp | GCCATGAGTTTTGAGTTATTCATCCTGGACTTTCTGGGGGACAACTaGTACCTCCTAGTTCATGGCTTGGCTCCCAATCAGTCCCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: AMSFELFILDFLGDN*YLLVHGLAPNQSLS Trigger: GGAAAGGGACTGATTGGGAGCCAAGCCATGAACTAGGAGGTAGCAGTTGTCCCCCAGAAAGTCCAGGATGAATAACTCAAAACTCATGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 90 bp | CATGGCAGTAGGCAGAGGCATTTTGAAGAGCCTTTGAGAATGCCCTaGCATGAGAGTAGTCTGGCCATGAGTTTTGAGTTATTCATCCTG | + |
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Preference number: 1 (lower is better) Translates to: HGSRQRHFEEPLRMP*HESSLAMSFELFIL Trigger: CAGGATGAATAACTCAAAACTCATGGCCAGACTACTCTCATGCCAGGGCATTCTCAAAGGCTCTTCAAAATGCCTCTGCCTACTGCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR TCA 90 bp | TCTGGTATGCGGGTAGTTTCTGCTGTTAACACTTCACTGACTCTCACACGCCTCCCCTGGGAAAGCCAGTaGAAGAATGAGGCTCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: SGMRVVSAVNTSLTLTRLPWESQ*KNEALS Trigger: GGACAGAGCCTCATTCTTTCACTGGCTTTCCCAGGG...GAGGCGTGTGAGAGTCAGTGAAGTGTTAACAGCAGAAACTACCCGCATACCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR GCA 90 bp | GCTAGCAAGGTGTCTGGTATGCGGGTAGTTTCTGCTGTTAACACTTCACTGACTCATATGATGGAACGCTaGCTATGGCTTCAGAAATCT | + |
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Preference number: 2 (lower is better) Translates to: ASKVSGMRVVSAVNTSLTHMMER*LWLQKS Trigger: AGATTTCTGAAGCCATAGGCAGCGTTCCATCATATG...AGTCAGTGAAGTGTTAACAGCAGAAACTACCCGCATACCAGACACCTTGCTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CCA 90 bp | TCCTCCCCTGGGTCATCCTGTTGTGTCACCTTTCCAGATATTCCAAAAACCTTAATTTTGTGTCTAACTTaGCTTTCCTCATCGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: SSPGSSCCVTFPDIPKTLILCLT*LSSSPA Trigger: GGCAGGCGATGAGGAAAGCCAAGTTAGACACAAAAT...TAAGGTTTTTGGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGGGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR GCA 72 bp | AGAAGCCAGGGTGTCTTTGTGAAGGCTGGCTCCCCATaGACTGAATGGTCTGGCATGGCAGTAGGCAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: RSQGVFVKAGSP*TEWSGMAVGRG Trigger: GCCTCTGCCTACTGCCATGCCAGACCATTCAGTGCATGGGGAGCCAGCCTTCACAAAGACACCCTGGCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR TCA 72 bp | CCAGGGTGTCTTTGTGAAGGCTGGCTCCCCATGCACTaGATGGTCTGGCATGGCAGTAGGCAGAGGCATTTT | + |
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Preference number: 3 (lower is better) Translates to: PGCLCEGWLPMH*MVWHGSRQRHF Trigger: AAAATGCCTCTGCCTACTGCCATGCCAGACCATTCAGTGCATGGGGAGCCAGCCTTCACAAAGACACCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 72 bp | ACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTaGGTCATCCTGTTGTGTCACCTTTCCAGATATTCC | + |
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Preference number: 3 (lower is better) Translates to: TSQTRGYTSLLP*VILLCHLSRYS Trigger: GGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 72 bp | GGACTTTCTGGGGGACAACTGCTACCTCCTAGTTCATaGCTTGGCTCCCAATCAGTCCCTTTCCTACCCTCA | + |
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Preference number: 3 (lower is better) Translates to: GLSGGQLLPPSS*LGSQSVPFLPS Trigger: TGAGGGTAGGAAAGGGACTGATTGGGAGCCAAGCCATGAACTAGGAGGTAGCAGTTGTCCCCCAGAAAGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 72 bp | GGTGTCTTTGTGAAGGCTGGCTCCCCATGCACTGAATaGTCTGGCATGGCAGTAGGCAGAGGCATTTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: GVFVKAGSPCTE*SGMAVGRGILK Trigger: CTTCAAAATGCCTCTGCCTACTGCCATGCCAGACCATTCAGTGCATGGGGAGCCAGCCTTCACAAAGACACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CAA 90 bp | AAGAATGAGGCTCTGTCCAGGGGTGAGCACAGGAGATTCCTAGCAGGCCTCAAGGATTTTGTGTCTAACTaGGCTTTCCTCATCGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: KNEALSRGEHRRFLAGLKDFVSN*AFLIAC Trigger: GCAGGCGATGAGGAAAGCCAAGTTAGACACAAAATC...CTTGAGGCCTGCTAGGAATCTCCTGTGCTCACCCCTGGACAGAGCCTCATTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR GCA 72 bp | CTCTCAGTTAACAGCTGTAACTTTAAAGGTACCACGTaGCACTGTCTGGGAACTTACGGAGACGCACATATG | + |
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Preference number: 3 (lower is better) Translates to: LSVNSCNFKGTT*HCLGTYGDAHM Trigger: CATATGTGCGTCTCCGTAAGTTCCCAGACAGTGGCACGTGGTACCTTTAAAGTTACAGCTGTTAACTGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CCA 72 bp | AGGCAGAGGCATTTTGAAGAGCCTTTGAGAATGCCCTaGCATGAGAGTAGTCTGGCCATGAGTTTTGAGTTA | + |
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Preference number: 3 (lower is better) Translates to: RQRHFEEPLRMP*HESSLAMSFEL Trigger: TAACTCAAAACTCATGGCCAGACTACTCTCATGCCAGGGCATTCTCAAAGGCTCTTCAAAATGCCTCTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CAA 90 bp | CTGGCCATGAGTTTTGAGTTATTCATCCTGGACTTTCTGGGGGACAACTGCTACCAGAGAGACCATCCTTaGGATTTTGTGTCTAACTTG | + |
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Preference number: 3 (lower is better) Translates to: LAMSFELFILDFLGDNCYQRDHP*DFVSNL Trigger: CAAGTTAGACACAAAATCCAAAGGATGGTCTCTCTG...GTAGCAGTTGTCCCCCAGAAAGTCCAGGATGAATAACTCAAAACTCATGGCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CAA 90 bp | CTGGCCATGAGTTTTGAGTTATTCATCCTGGACTTTCTGGGGGACAACTGCTACAAAGCACTGTGTGTGTaGTATGTGTTGGATAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: LAMSFELFILDFLGDNCYKALCV*YVLDSL Trigger: TAAACTATCCAACACATACAACACACACAGTGCTTT...GTAGCAGTTGTCCCCCAGAAAGTCCAGGATGAATAACTCAAAACTCATGGCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CAA 90 bp | CTGGCCATGAGTTTTGAGTTATTCATCCTGGACTTTCTGGGGGACAACTGCTACTCAGGGTATTACATTTaGTACTTAGGAAAACGCCAT | + |
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Preference number: 3 (lower is better) Translates to: LAMSFELFILDFLGDNCYSGYYI*YLGKRH Trigger: ATGGCGTTTTCCTAAGTACAAAATGTAATACCCTGA...GTAGCAGTTGTCCCCCAGAAAGTCCAGGATGAATAACTCAAAACTCATGGCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR-3UTR CAA 90 bp | TATTACATTTTGTACTTAGGAAAACGCCATGCCTGTACTTCTAAGTGTTGGAAATACAAGGGTCTCACTTaGCAAAGTAAGATGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: YYILYLGKRHACTSKCWKYKGLT*QSKMIQ Trigger: CTGAATCATCTTACTTTGCAAAGTGAGACCCTTGTA...TTTCCAACACTTAGAAGTACAGGCATGGCGTTTTCCTAAGTACAAAATGTAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR GCA 90 bp | ACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTGGGTCATCCTGTTGTGTAAGACACTGGAGGGTTaGCTTCATCAGCAAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TSQTRGYTSLLPWVILLCKTLEG*LHQQVS Trigger: GGACACTTGCTGATGAAGGCAACCCTCCAGTGTCTT...ACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR GCA 90 bp | ACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTGGGTCATCCTGTTGTGTATGTCTTCAGGCATCTaGCCCTGCTGTAATCCCACA | + |
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Preference number: 4 (lower is better) Translates to: TSQTRGYTSLLPWVILLCMSSGI*PCCNPT Trigger: TGTGGGATTACAGCAGGGGCAGATGCCTGAAGACAT...ACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR GCA 90 bp | ACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTGGGTCATCCTGTTGTGTAATGGGGTCCGAATGTaGAGACAAAGTCTTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: TSQTRGYTSLLPWVILLCNGVRM*RQSLEA Trigger: TGCCTCAAGACTTTGTCTGCACATTCGGACCCCATT...ACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR GCA 90 bp | ACCTCCCAAACCAGAGGCTACACGTCCCTCCTCCCCTGGGTCATCCTGTTGTGTAAGACGAAATCGCTGTaGCCCTTCAGTGTTTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: TSQTRGYTSLLPWVILLCKTKSL*PFSVFR Trigger: TCTGAAAACACTGAAGGGGCACAGCGATTTCGTCTT...ACACAACAGGATGACCCAGGGGAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR TCA 90 bp | TCTGGTATGCGGGTAGTTTCTGCTGTTAACACTTCACTGACTCTCACACGCCTCGTGCAGACAAAGTCTTaGGGCATTTTCCTGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SGMRVVSAVNTSLTLTRLVQTKS*GIFLFL Trigger: TAAAAACAGGAAAATGCCTCAAGACTTTGTCTGCAC...GAGGCGTGTGAGAGTCAGTGAAGTGTTAACAGCAGAAACTACCCGCATACCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR TCA 90 bp | TCTGGTATGCGGGTAGTTTCTGCTGTTAACACTTCACTGACTCTCACACGCCTCTGTCCAAAGTTGCAGTaGGAATGTATTTACCATTTG | + |
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Preference number: 4 (lower is better) Translates to: SGMRVVSAVNTSLTLTRLCPKLQ*ECIYHL Trigger: CAAATGGTAAATACATTCTCACTGCAACTTTGGACA...GAGGCGTGTGAGAGTCAGTGAAGTGTTAACAGCAGAAACTACCCGCATACCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CCA 90 bp | TCCTCCCCTGGGTCATCCTGTTGTGTCACCTTTCCAGATATTCCAAAAACCTTATTTTACAAAAGACACTaGAGGGTTGCCTTCATCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSPGSSCCVTFPDIPKTLFYKRH*RVAFIS Trigger: GCTGATGAAGGCAACCCTCCAGTGTCTTTTGTAAAA...TAAGGTTTTTGGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGGGAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CAA 72 bp | AGTTTAAGCTTTGCCAGAATCCAGAGAGACCATCCTTaGGATTTTGTGTCTAACTTGGCTTTCCTCATCGCC | + |
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Preference number: 4 (lower is better) Translates to: SLSFARIQRDHP*DFVSNLAFLIA Trigger: GGCGATGAGGAAAGCCAAGTTAGACACAAAATCCAAAGGATGGTCTCTCTGGATTCTGGCAAAGCTTAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| 3UTR CAA 72 bp | CAATCAGTCCCTTTCCTACCCTCAGGGTATTACATTTaGTACTTAGGAAAACGCCATGCCTGTACTTCTAAG | + |
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Preference number: 4 (lower is better) Translates to: QSVPFLPSGYYI*YLGKRHACTSK Trigger: CTTAGAAGTACAGGCATGGCGTTTTCCTAAGTACAAAATGTAATACCCTGAGGGTAGGAAAGGGACTGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CCA 90 bp | TATTACATTTTGTACTTAGGAAAACGCCATGCCTGTACTTCTAAGTGTTGGAAAAGTGTCCTTAAACACTaGCCTGACGCAGCATCCCAA | + |
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Preference number: 4 (lower is better) Translates to: YYILYLGKRHACTSKCWKSVLKH*PDAASQ Trigger: TTGGGATGCTGCGTCAGGCCAGTGTTTAAGGACACT...TTTCCAACACTTAGAAGTACAGGCATGGCGTTTTCCTAAGTACAAAATGTAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR TCA 90 bp | TATTACATTTTGTACTTAGGAAAACGCCATGCCTGTACTTCTAAGTGTTGGAAAATCACCACATCTGTGTaGCCTTGCAACCTCTGTACA | + |
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Preference number: 4 (lower is better) Translates to: YYILYLGKRHACTSKCWKITTSV*PCNLCT Trigger: TGTACAGAGGTTGCAAGGTCACACAGATGTGGTGAT...TTTCCAACACTTAGAAGTACAGGCATGGCGTTTTCCTAAGTACAAAATGTAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR GCA 90 bp | TATTACATTTTGTACTTAGGAAAACGCCATGCCTGTACTTCTAAGTGTTGGAAAAGTATTGTCCAAAGTTaGAGTGAGAATGTATTTACC | + |
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Preference number: 4 (lower is better) Translates to: YYILYLGKRHACTSKCWKSIVQS*SENVFT Trigger: GGTAAATACATTCTCACTGCAACTTTGGACAATACT...TTTCCAACACTTAGAAGTACAGGCATGGCGTTTTCCTAAGTACAAAATGTAATA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CAA 90 bp | AAGAATGAGGCTCTGTCCAGGGGTGAGCACAGGAGATTCCTAGCAGGCCTCAAGAGGTTGGATGGTGGGTaGAAGTCACAACAGAAGACG | + |
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Preference number: 5 (lower is better) Translates to: KNEALSRGEHRRFLAGLKRLDGG*KSQQKT Trigger: CGTCTTCTGTTGTGACTTCAACCCACCATCCAACCT...CTTGAGGCCTGCTAGGAATCTCCTGTGCTCACCCCTGGACAGAGCCTCATTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CAA 90 bp | AAGAATGAGGCTCTGTCCAGGGGTGAGCACAGGAGATTCCTAGCAGGCCTCAAGCACATCTGTGTGACCTaGCAACCTCTGTACAATCTC | + |
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Preference number: 5 (lower is better) Translates to: KNEALSRGEHRRFLAGLKHICVT*QPLYNL Trigger: GAGATTGTACAGAGGTTGCAAGGTCACACAGATGTG...CTTGAGGCCTGCTAGGAATCTCCTGTGCTCACCCCTGGACAGAGCCTCATTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CCA 90 bp | TTTCACACTCTCATCAAAAGAGCCCGAAACGATGAGGTTGGATGGTaGGTTGAAGTCACAACAGAAGACGAAATCGCTGTGCCCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: FHTLIKRARNDEVGW*VEVTTEDEIAVPLQ Trigger: CTGAAGGGGCACAGCGATTTCGTCTTCTGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGTGTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CAA 90 bp | TCCTCCCCTGGGTCATCCTGTTGTGTCACCTTTCCAGATATTCCAAAAACCTTACCCGAAACGATGAGGTaGGATGGTGGGTTGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: SSPGSSCCVTFPDIPKTLPETMR*DGGLKS Trigger: TGACTTCAACCCACCATCCAACCTCATCGTTTCGGG...TAAGGTTTTTGGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGGGAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CAA 90 bp | CTGGCCATGAGTTTTGAGTTATTCATCCTGGACTTTCTGGGGGACAACTGCTACAAAGACACTGGAGGGTaGCCTTCATCAGCAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: LAMSFELFILDFLGDNCYKDTGG*PSSASV Trigger: GACACTTGCTGATGAAGGCAACCCTCCAGTGTCTTT...GTAGCAGTTGTCCCCCAGAAAGTCCAGGATGAATAACTCAAAACTCATGGCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS-3UTR CAA 90 bp | TCTGGTATGCGGGTAGTTTCTGCTGTTAACACTTCACTGACTCTCACACGCCTCCACAGTTTAAGAGTATaGTCCAAAGTTGCAGTGAGA | + |
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Preference number: 5 (lower is better) Translates to: SGMRVVSAVNTSLTLTRLHSLRV*SKVAVR Trigger: TCTCACTGCAACTTTGGACAATACTCTTAAACTGTG...GAGGCGTGTGAGAGTCAGTGAAGTGTTAACAGCAGAAACTACCCGCATACCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CCA 72 bp | GGAGGGTTGCCTTCATCAGCAAGTGTCCTTAAACACTaGCCTGACGCAGCATCCCAAATTCTACAAAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: GGLPSSASVLKH*PDAASQILQSP Trigger: TGGGCTTTGTAGAATTTGGGATGCTGCGTCAGGCCAGTGTTTAAGGACACTTGCTGATGAAGGCAACCCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CAA 90 bp | ACACTCTCATCAAAAGAGCCCGAAACGATGAGGTTGGATGGTGGGTaGAAGTCACAACAGAAGACGAAATCGCTGTGCCCCTTCAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: TLSSKEPETMRLDGG*KSQQKTKSLCPFSV Trigger: AACACTGAAGGGGCACAGCGATTTCGTCTTCTGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CAA 90 bp | TCCCATATTTTCACACTCTCATCAAAAGAGCCCGAAACGATGAGGTaGGATGGTGGGTTGAAGTCACAACAGAAGACGAAATCGCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SHIFTLSSKEPETMR*DGGLKSQQKTKSLC Trigger: GCACAGCGATTTCGTCTTCTGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGTGTGAAAATATGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CCA 72 bp | ACTCTCATCAAAAGAGCCCGAAACGATGAGGTTGGATaGTGGGTTGAAGTCACAACAGAAGACGAAATCGCT | + |
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Preference number: 6 (lower is better) Translates to: TLIKRARNDEVG*WVEVTTEDEIA Trigger: AGCGATTTCGTCTTCTGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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| CDS CAA 72 bp | TTCACACTCTCATCAAAAGAGCCCGAAACGATGAGGTaGGATGGTGGGTTGAAGTCACAACAGAAGACGAAA | + |
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Preference number: 6 (lower is better) Translates to: FTLSSKEPETMR*DGGLKSQQKTK Trigger: TTTCGTCTTCTGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGTGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042203.10 |
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