Pregenerated sensors for WDR53 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022787

Ensembl transcript IDs: ENSMUST00000023474.4, ENSMUST00000135289.2, ENSMUST00000141820.8, ENSMUST00000178573.8

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCCCCTCATCCTCGGCTCCTGGGGCTCTGGAGTTTCCACCCTGCGTaGGGCACGCTGCCCTCTTTGCTTTCTTCCTGTGGATGTGCCTCG	+
Preference number: 5 (lower is better) Translates to: APHPRLLGLWSFHPA*GTLPSLLSSCGCAS Trigger: CGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCAGGGTGGAAACTCCAGAGCCCCAGGAGCCGAGGATGAGGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS GCA 90 bp	TGGGGCTCTGGAGTTTCCACCCTGCGTGGGGCACGCTGCCCTCTTTaGTTTCTTCCTGTGGATGTGCCTCGCAGGGCTCTTCTGCAGCTT	+
Preference number: 5 (lower is better) Translates to: WGSGVSTLRGARCPL*FLPVDVPRRALLQL Trigger: AAGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCAGGGTGGAAACTCCAGAGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS GCA 90 bp	CCCTGCGTGGGGCACGCTGCCCTCTTTGCTTTCTTCCTGTGGATGTaGCTCGCAGGGCTCTTCTGCAGCTTCTCCATCTTACCGCTCACA	+
Preference number: 5 (lower is better) Translates to: PCVGHAALFAFFLWM*LAGLFCSFSILPLT Trigger: TGTGAGCGGTAAGATGGAGAAGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CCA 90 bp	TTTCCACCCTGCGTGGGGCACGCTGCCCTCTTTGCTTTCTTCCTGTaGATGTGCCTCGCAGGGCTCTTCTGCAGCTTCTCCATCTTACCG	+
Preference number: 5 (lower is better) Translates to: FPPCVGHAALFAFFL*MCLAGLFCSFSILP Trigger: CGGTAAGATGGAGAAGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCAGGGTGGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CCA 90 bp	GAGACAGAGTGGGCTAGCGCAGGGTTTAGGAGCCGACCAGGGGTCTaGGGGCCTTCCGTTTCCTCTGTTTCATCCTCCTGTAAATTTGTA	+
Preference number: 5 (lower is better) Translates to: ETEWASAGFRSRPGV*GPSVSSVSSSCKFV Trigger: TACAAATTTACAGGAGGATGAAACAGAGGAAACGGAAGGCCCCCAGACCCCTGGTCGGCTCCTAAACCCTGCGCTAGCCCACTCTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS GCA 90 bp	ACATTTGACTCCCATCACCCTGAAGATGCGCACCTTACCATCCTCTaGACCACAGCTAAAAATATTGCCGCACGACGCTACAGAGACAGA	+
Preference number: 5 (lower is better) Translates to: TFDSHHPEDAHLTIL*TTAKNIAARRYRDR Trigger: TCTGTCTCTGTAGCGTCGTGCGGCAATATTTTTAGCTGTGGTGCAGAGGATGGTAAGGTGCGCATCTTCAGGGTGATGGGAGTCAAATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS CCA 72 bp	TGGCAGAATCTTTGCATGCCCCTCATCCTCGGCTCCTaGGGCTCTGGAGTTTCCACCCTGCGTGGGGCACGC	+
Preference number: 6 (lower is better) Translates to: WQNLCMPLILGS*GSGVSTLRGAR Trigger: GCGTGCCCCACGCAGGGTGGAAACTCCAGAGCCCCAGGAGCCGAGGATGAGGGGCATGCAAAGATTCTGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CAA 90 bp	CTGGGGCTCTGGAGTTTCCACCCTGCGTGGGGCACGCTGCCCTCTTaGCTTTCTTCCTGTGGATGTGCCTCGCAGGGCTCTTCTGCAGCT	+
Preference number: 6 (lower is better) Translates to: LGLWSFHPAWGTLPS*LSSCGCASQGSSAA Trigger: AGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCAGGGTGGAAACTCCAGAGCCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CCA 72 bp	TGCGTGGGGCACGCTGCCCTCTTTGCTTTCTTCCTGTaGATGTGCCTCGCAGGGCTCTTCTGCAGCTTCTCC	+
Preference number: 6 (lower is better) Translates to: CVGHAALFAFFL*MCLAGLFCSFS Trigger: GGAGAAGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCCCACGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS GCA 72 bp	GGGCACGCTGCCCTCTTTGCTTTCTTCCTGTGGATGTaGCTCGCAGGGCTCTTCTGCAGCTTCTCCATCTTA	+
Preference number: 6 (lower is better) Translates to: GHAALFAFFLWM*LAGLFCSFSIL Trigger: TAAGATGGAGAAGCTGCAGAAGAGCCCTGCGAGGCACATCCACAGGAAGAAAGCAAAGAGGGCAGCGTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CCA 72 bp	CTAAAAATATTGCCGCACGACGCTACAGAGACAGAGTaGGCTAGCGCAGGGTTTAGGAGCCGACCAGGGGTC	+
Preference number: 6 (lower is better) Translates to: LKILPHDATETE*ASAGFRSRPGV Trigger: GACCCCTGGTCGGCTCCTAAACCCTGCGCTAGCCCACTCTGTCTCTGTAGCGTCGTGCGGCAATATTTTTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS GCA 72 bp	CCGTGTTCAATATCGAGCTTTGGCAGAATCTTTGCATaGCCCTCATCCTCGGCTCCTGGGGCTCTGGAGTTT	+
Preference number: 6 (lower is better) Translates to: PCSISSFGRIFA*PSSSAPGALEF Trigger: AAACTCCAGAGCCCCAGGAGCCGAGGATGAGGGGCATGCAAAGATTCTGCCAAAGCTCGATATTGAACACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS GCA 72 bp	TTCTCCGTGTTCAATATCGAGCTTTGGCAGAATCTTTaGATGCCCCTCATCCTCGGCTCCTGGGGCTCTGGA	+
Preference number: 6 (lower is better) Translates to: FSVFNIELWQNL*MPLILGSWGSG Trigger: TCCAGAGCCCCAGGAGCCGAGGATGAGGGGCATGCAAAGATTCTGCCAAAGCTCGATATTGAACACGGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CAA 72 bp	TTTCTCCGTGTTCAATATCGAGCTTTGGCAGAATCTTaGCATGCCCCTCATCCTCGGCTCCTGGGGCTCTGG	+
Preference number: 6 (lower is better) Translates to: FLRVQYRALAES*HAPHPRLLGLW Trigger: CCAGAGCCCCAGGAGCCGAGGATGAGGGGCATGCAAAGATTCTGCCAAAGCTCGATATTGAACACGGAGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023474.4 ENSMUST00000178573.8
CDS CAA 90 bp	CTGAAGATGCGCACCTTACCATCCTCTGCACCACAGCTAAAAATATaGCCGCACGACGCTACAGAGACAGAGTGGGCTAGCGCAGGGTTT	+
Preference number: 6 (lower is better) Translates to: LKMRTLPSSAPQLKI*PHDATETEWASAGF Trigger: AAACCCTGCGCTAGCCCACTCTGTCTCTGTAGCGTCGTGCGGCAATATTTTTAGCTGTGGTGCAGAGGATGGTAAGGTGCGCATCTTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS GCA 72 bp	TCCCATCACCCTGAAGATGCGCACCTTACCATCCTCTaGACCACAGCTAAAAATATTGCCGCACGACGCTAC	+
Preference number: 6 (lower is better) Translates to: SHHPEDAHLTIL*TTAKNIAARRY Trigger: GTAGCGTCGTGCGGCAATATTTTTAGCTGTGGTGCAGAGGATGGTAAGGTGCGCATCTTCAGGGTGATGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS TCA 72 bp	CACCAGCCCGTCTTTATTTGCATTCAGGCAAAGGATTaGAGAAGAATGTCCACCAGTCCACTTGACTGCCAT	+
Preference number: 6 (lower is better) Translates to: HQPVFICIQAKD*RRMSTSPLDCH Trigger: ATGGCAGTCAAGTGGACTGGTGGACATTCTTCTTCAATCCTTTGCCTGAATGCAAATAAAGACGGGCTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023474.4 ENSMUST00000135289.2 ENSMUST00000141820.8 ENSMUST00000178573.8
CDS TCA 72 bp	TCCTGTAAATTTGTAATCCAAACAGGACGGGCTTTTTaGAGACTCCACAGCATTACCTGCATATCCAGGCCA	+
Preference number: 6 (lower is better) Translates to: SCKFVIQTGRAF*RLHSITCISRP Trigger: TGGCCTGGATATGCAGGTAATGCTGTGGAGTCTTCAAAAAGCCCGTCCTGTTTGGATTACAAATTTACAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023474.4 ENSMUST00000141820.8 ENSMUST00000178573.8

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