Pregenerated sensors for WDR49 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000104301Ensembl transcript IDs: ENSMUST00000193989.4, ENSMUST00000203169.3, ENSMUST00000204341.3
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAAGGCAGGAGCACTGGAAAGTCCAGTCACACAGACACTGCAGTCTaGAGAGGAGGAGATGATGAGCAGACGACCACAGGACTCACACAT | + |
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Preference number: 5 (lower is better) Translates to: QGRSTGKSSHTDTAV*RGGDDEQTTTGLTH Trigger: ATGTGTGAGTCCTGTGGTCGTCTGCTCATCATCTCCTCCTCTGCAGACTGCAGTGTCTGTGTGACTGGACTTTCCAGTGCTCCTGCCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 90 bp | CAATATTCCAGTGGCTTGCCTGACCAAAGATCAAGGCAGGAGCACTaGAAAGTCCAGTCACACAGACACTGCAGTCTGCAGAGGAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: QYSSGLPDQRSRQEH*KVQSHRHCSLQRRR Trigger: TCTCCTCCTCTGCAGACTGCAGTGTCTGTGTGACTGGACTTTCCAGTGCTCCTGCCTTGATCTTTGGTCAGGCAAGCCACTGGAATATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 90 bp | ATCTTTACATTTCGGGCAGCCTGGGTGGCCTGGTCTGCCACACCATaGCTTTCACAGCTTCTCCTGGAATTGAGCTTTTGGGCTTCTACA | + |
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Preference number: 5 (lower is better) Translates to: IFTFRAAWVAWSATP*LSQLLLELSFWAST Trigger: TGTAGAAGCCCAAAAGCTCAATTCCAGGAGAAGCTGTGAAAGTCATGGTGTGGCAGACCAGGCCACCCAGGCTGCCCGAAATGTAAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 90 bp | CTCACACATCTCCAAGGAACTTATCCGGTCCTCATGAGGTTGAGATaGTCTGAGCAAAGGTGGAGGCTGGGTGATTTTGCTCTCAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: LTHLQGTYPVLMRLR*SEQRWRLGDFALSG Trigger: TCCACTGAGAGCAAAATCACCCAGCCTCCACCTTTGCTCAGATCATCTCAACCTCATGAGGACCGGATAAGTTCCTTGGAGATGTGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 90 bp | TTCTGTGTCAATCTTTACATTTCGGGCAGCCTGGGTGGCCTGGTCTaGCACACCATGACTTTCACAGCTTCTCCTGGAATTGAGCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: FCVNLYISGSLGGLV*HTMTFTASPGIELL Trigger: CAAAAGCTCAATTCCAGGAGAAGCTGTGAAAGTCATGGTGTGGCAGACCAGGCCACCCAGGCTGCCCGAAATGTAAAGATTGACACAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 90 bp | CTTTACAGTTCCATCTGTACTGCCAGTCAAAAGCCGTGTCTTATTTaGATCCAAGGCCATGGTGCTGATCTCTGCATTGCCATGACAACC | + |
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Preference number: 5 (lower is better) Translates to: LYSSICTASQKPCLI*IQGHGADLCIAMTT Trigger: GGTTGTCATGGCAATGCAGAGATCAGCACCATGGCCTTGGATGCAAATAAGACACGGCTTTTGACTGGCAGTACAGATGGAACTGTAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 90 bp | CAGCTCTGCCCAGTCAATGGTCATGGTGGCTTCTTCATTATCACATaGATTAGCAGGACGCTCAAAAAGGGAAATCATGGCTGCTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: QLCPVNGHGGFFIIT*ISRTLKKGNHGCCE Trigger: TTCACAGCAGCCATGATTTCCCTTTTTGAGCGTCCTGCTAATGCATGTGATAATGAAGAAGCCACCATGACCATTGACTGGGCAGAGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS GCA 90 bp | CAAAAGCCGTGTCTTATTTGCATCCAAGGCCATGGTGCTGATCTCTaGATTGCCATGACAACCAGCAAACTGTTTGATTTTCTGCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: QKPCLICIQGHGADL*IAMTTSKLFDFLPS Trigger: ACTGGGCAGAAAATCAAACAGTTTGCTGGTTGTCATGGCAATGCAGAGATCAGCACCATGGCCTTGGATGCAAATAAGACACGGCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 90 bp | TGCCCCAACCCACAGTTTCTGCCATCTTCTGTACAAATTCTTCTCTaGGCATACAAATGGTTTGACTCGGATCTTGGGACTCAAAGACCT | + |
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Preference number: 5 (lower is better) Translates to: CPNPQFLPSSVQILL*AYKWFDSDLGTQRP Trigger: AGGTCTTTGAGTCCCAAGATCCGAGTCAAACCATTTGTATGCCCAGAGAAGAATTTGTACAGAAGATGGCAGAAACTGTGGGTTGGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203169.3 |
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| CDS GCA 90 bp | GTGCTGCAATACATGACAACATTTGTGACATCCAGAGACCAGCTCTaGCCAGTCAATGGTCATGGTGGCTTCTTCATTATCACATGCATT | + |
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Preference number: 5 (lower is better) Translates to: VLQYMTTFVTSRDQL*PVNGHGGFFIITCI Trigger: AATGCATGTGATAATGAAGAAGCCACCATGACCATTGACTGGGCAGAGCTGGTCTCTGGATGTCACAAATGTTGTCATGTATTGCAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CCA 90 bp | CTCATCAAATACAGCTTTCAAAGTTTCAGAGAGCAGAGGAAGCTCTaGAATTTGGGATACATCCTCTTCCGGCCCTTCCTTAAAGTATTT | + |
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Preference number: 5 (lower is better) Translates to: LIKYSFQSFREQRKL*NLGYILFRPFLKVF Trigger: AAATACTTTAAGGAAGGGCCGGAAGAGGATGTATCCCAAATTCCAGAGCTTCCTCTGCTCTCTGAAACTTTGAAAGCTGTATTTGATGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 90 bp | ATTATCACATGCATTAGCAGGACGCTCAAAAAGGGAAATCATGGCTaGTGTGAAAGCAACTGCTTGAACCTTTCCAGTTATATCTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: IITCISRTLKKGNHG*CESNCLNLSSYISK Trigger: TTTGGAGATATAACTGGAAAGGTTCAAGCAGTTGCTTTCACAGCAGCCATGATTTCCCTTTTTGAGCGTCCTGCTAATGCATGTGATAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS TCA 90 bp | TTCCAGATTTTCAACCATCCATCAGAATCTCCAGTGGCAAGGTATTaGTTCAGTTTATCAGTAGACATAATGATGGATCCAACACCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FQIFNHPSESPVARY*FSLSVDIMMDPTPA Trigger: TGCTGGTGTTGGATCCATCATTATGTCTACTGATAAACTGAATCAATACCTTGCCACTGGAGATTCTGATGGATGGTTGAAAATCTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 72 bp | TTTCGGGCAGCCTGGGTGGCCTGGTCTGCCACACCATaGCTTTCACAGCTTCTCCTGGAATTGAGCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: FRAAWVAWSATP*LSQLLLELSFW Trigger: CCAAAAGCTCAATTCCAGGAGAAGCTGTGAAAGTCATGGTGTGGCAGACCAGGCCACCCAGGCTGCCCGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 72 bp | AAACCTTCTGTTTTCTCAAGGCGTGTTGGCTCTGACTaGTGCCCCACAGTCAATCCAAGTGCAGCTTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: KPSVFSRRVGSD*CPTVNPSAASG Trigger: CCCTGAAGCTGCACTTGGATTGACTGTGGGGCACCAGTCAGAGCCAACACGCCTTGAGAAAACAGAAGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203169.3 |
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| CDS TCA 72 bp | TGTATCCCAAAACCTGACATAACCAGATGCTCCACATaGCACCAGGTTAGCCCCTCCTGTGGCTGCTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: CIPKPDITRCST*HQVSPSCGCFG Trigger: ACCAAAGCAGCCACAGGAGGGGCTAACCTGGTGTCATGTGGAGCATCTGGTTATGTCAGGTTTTGGGATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 72 bp | CTCCAAGGAACTTATCCGGTCCTCATGAGGTTGAGATaGTCTGAGCAAAGGTGGAGGCTGGGTGATTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: LQGTYPVLMRLR*SEQRWRLGDFA Trigger: AGCAAAATCACCCAGCCTCCACCTTTGCTCAGATCATCTCAACCTCATGAGGACCGGATAAGTTCCTTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 72 bp | TCCATCTGTACTGCCAGTCAAAAGCCGTGTCTTATTTaGATCCAAGGCCATGGTGCTGATCTCTGCATTGCC | + |
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Preference number: 6 (lower is better) Translates to: SICTASQKPCLI*IQGHGADLCIA Trigger: GGCAATGCAGAGATCAGCACCATGGCCTTGGATGCAAATAAGACACGGCTTTTGACTGGCAGTACAGATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 72 bp | TTGTGTTTTCCTGGGAGGAATTCAAGGTCCTTCCATTaGGGAACGACTGTTGCCTTTGCTCGTTCATCTCTC | + |
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Preference number: 6 (lower is better) Translates to: LCFPGRNSRSFH*GTTVAFARSSL Trigger: GAGAGATGAACGAGCAAAGGCAACAGTCGTTCCCCAATGGAAGGACCTTGAATTCCTCCCAGGAAAACACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | CTTGTGTTTTCCTGGGAGGAATTCAAGGTCCTTCCATaGGGGAACGACTGTTGCCTTTGCTCGTTCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: LVFSWEEFKVLP*GNDCCLCSFIS Trigger: AGAGATGAACGAGCAAAGGCAACAGTCGTTCCCCAATGGAAGGACCTTGAATTCCTCCCAGGAAAACACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 90 bp | AATGGTGTCCTTGTGTTTTCCTGGGAGGAATTCAAGGTCCTTCCATaGGGGAACGACTGTTGCCTTTGCTCGTTCATCTCTCTCATAAAG | + |
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Preference number: 6 (lower is better) Translates to: NGVLVFSWEEFKVLP*GNDCCLCSFISLIK Trigger: CTTTATGAGAGAGATGAACGAGCAAAGGCAACAGTCGTTCCCCAATGGAAGGACCTTGAATTCCTCCCAGGAAAACACAAGGACACCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS TCA 72 bp | AAAGCCGTGTCTTATTTGCATCCAAGGCCATGGTGCTaGTCTCTGCATTGCCATGACAACCAGCAAACTGTT | + |
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Preference number: 6 (lower is better) Translates to: KAVSYLHPRPWC*SLHCHDNQQTV Trigger: AACAGTTTGCTGGTTGTCATGGCAATGCAGAGATCAGCACCATGGCCTTGGATGCAAATAAGACACGGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 72 bp | TACAGCTTTCAAAGTTTCAGAGAGCAGAGGAAGCTCTaGAATTTGGGATACATCCTCTTCCGGCCCTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: YSFQSFREQRKL*NLGYILFRPFL Trigger: AAGGAAGGGCCGGAAGAGGATGTATCCCAAATTCCAGAGCTTCCTCTGCTCTCTGAAACTTTGAAAGCTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 72 bp | CTGCCACACCATGACTTTCACAGCTTCTCCTGGAATTaGGCTTTTGGGCTTCTACATCTACCATGGATGTTA | + |
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Preference number: 6 (lower is better) Translates to: LPHHDFHSFSWN*AFGLLHLPWML Trigger: TAACATCCATGGTAGATGTAGAAGCCCAAAAGCTCAATTCCAGGAGAAGCTGTGAAAGTCATGGTGTGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS TCA 72 bp | AGAGAAAAGTGGTTTTCAATATTCCAGTGGCTTGCCTaGCCAAAGATCAAGGCAGGAGCACTGGAAAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: REKWFSIFQWLA*PKIKAGALESP Trigger: TGGACTTTCCAGTGCTCCTGCCTTGATCTTTGGTCAGGCAAGCCACTGGAATATTGAAAACCACTTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 72 bp | AGGAAGAGAAAAGTGGTTTTCAATATTCCAGTGGCTTaGCTGACCAAAGATCAAGGCAGGAGCACTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: RKRKVVFNIPVA*LTKDQGRSTGK Trigger: CTTTCCAGTGCTCCTGCCTTGATCTTTGGTCAGGCAAGCCACTGGAATATTGAAAACCACTTTTCTCTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 72 bp | CCAGTCAATGGTCATGGTGGCTTCTTCATTATCACATaGATTAGCAGGACGCTCAAAAAGGGAAATCATGGC | + |
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Preference number: 6 (lower is better) Translates to: PVNGHGGFFIIT*ISRTLKKGNHG Trigger: GCCATGATTTCCCTTTTTGAGCGTCCTGCTAATGCATGTGATAATGAAGAAGCCACCATGACCATTGACTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | CAGGAAGAGAAAAGTGGTTTTCAATATTCCAGTGGCTaGCCTGACCAAAGATCAAGGCAGGAGCACTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: QEEKSGFQYSSG*PDQRSRQEHWK Trigger: TTTCCAGTGCTCCTGCCTTGATCTTTGGTCAGGCAAGCCACTGGAATATTGAAAACCACTTTTCTCTTCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CAA 72 bp | GGAGGAATTCAAGGTCCTTCCATTGGGGAACGACTGTaGCCTTTGCTCGTTCATCTCTCTCATAAAGCAATA | + |
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Preference number: 6 (lower is better) Translates to: GGIQGPSIGERL*PLLVHLSHKAI Trigger: TATTGCTTTATGAGAGAGATGAACGAGCAAAGGCAACAGTCGTTCCCCAATGGAAGGACCTTGAATTCCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | AGGGAAACCAAACTTGTCACCCACAGGTGTTTGAGTTaGATGGCATCTGAAGTGATAGGAAGTGATTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: RETKLVTHRCLS*MASEVIGSDSC Trigger: GCAAGAATCACTTCCTATCACTTCAGATGCCATCAAACTCAAACACCTGTGGGTGACAAGTTTGGTTTCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 90 bp | GGGCATACAAATGGTTTGACTCGGATCTTGGGACTCAAAGACCTGTaGTATCTTCACAAAATCCTCCACACTGAGCTTGTTTTCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: GHTNGLTRILGLKDL*YLHKILHTELVFKE Trigger: CTCTTTGAAAACAAGCTCAGTGTGGAGGATTTTGTGAAGATACAACAGGTCTTTGAGTCCCAAGATCCGAGTCAAACCATTTGTATGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203169.3 |
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| CDS TCA 72 bp | TTACCTGTTTCAGGAGGGAATTGTAAAGAACACAACTaGCTGCTTTTAGATGGCTCTTCACCCTTTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPVSGGNCKEHN*LLLDGSSPFCW Trigger: CCAGCAAAAGGGTGAAGAGCCATCTAAAAGCAGTCAGTTGTGTTCTTTACAATTCCCTCCTGAAACAGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS GCA 72 bp | TGTCTTATTTGCATCCAAGGCCATGGTGCTGATCTCTaGATTGCCATGACAACCAGCAAACTGTTTGATTTT | + |
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Preference number: 6 (lower is better) Translates to: CLICIQGHGADL*IAMTTSKLFDF Trigger: AAAATCAAACAGTTTGCTGGTTGTCATGGCAATGCAGAGATCAGCACCATGGCCTTGGATGCAAATAAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CCA 72 bp | CCATCTTCTGTACAAATTCTTCTCTGGGCATACAAATaGTTTGACTCGGATCTTGGGACTCAAAGACCTGTT | + |
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Preference number: 6 (lower is better) Translates to: PSSVQILLWAYK*FDSDLGTQRPV Trigger: AACAGGTCTTTGAGTCCCAAGATCCGAGTCAAACCATTTGTATGCCCAGAGAAGAATTTGTACAGAAGATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203169.3 |
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| CDS CAA 72 bp | ATTCAAGGTCCTTCCATTGGGGAACGACTGTTGCCTTaGCTCGTTCATCTCTCTCATAAAGCAATAACAGTA | + |
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Preference number: 6 (lower is better) Translates to: IQGPSIGERLLP*LVHLSHKAITV Trigger: TACTGTTATTGCTTTATGAGAGAGATGAACGAGCAAAGGCAACAGTCGTTCCCCAATGGAAGGACCTTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | TTTTCCAGGGAAACCAAACTTGTCACCCACAGGTGTTaGAGTTTGATGGCATCTGAAGTGATAGGAAGTGAT | + |
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Preference number: 6 (lower is better) Translates to: FSRETKLVTHRC*SLMASEVIGSD Trigger: ATCACTTCCTATCACTTCAGATGCCATCAAACTCAAACACCTGTGGGTGACAAGTTTGGTTTCCCTGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | CCAATAATCCATGCAGATGGGAGCTCCTTGCAGACCTaGGAGTTTGTATTGACAAGGAAATTCTTCTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PIIHADGSSLQT*EFVLTRKFFFG Trigger: TCCAAAGAAGAATTTCCTTGTCAATACAAACTCCAAGGTCTGCAAGGAGCTCCCATCTGCATGGATTATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | AGGATCATACCAATAATCCATGCAGATGGGAGCTCCTaGCAGACCTTGGAGTTTGTATTGACAAGGAAATTC | + |
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Preference number: 6 (lower is better) Translates to: RIIPIIHADGSS*QTLEFVLTRKF Trigger: GAATTTCCTTGTCAATACAAACTCCAAGGTCTGCAAGGAGCTCCCATCTGCATGGATTATTGGTATGATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS TCA 72 bp | AAAGTTGTTTTCTCTCAGCAAAGAATTGAACTGCTATaGCACTGGCTGAATGACCCCATAGAACACCAACTG | + |
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Preference number: 6 (lower is better) Translates to: KVVFSQQRIELL*HWLNDPIEHQL Trigger: CAGTTGGTGTTCTATGGGGTCATTCAGCCAGTGTCATAGCAGTTCAATTCTTTGCTGAGAGAAAACAACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000193989.4 ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS GCA 72 bp | AAACTGATTAAAGTTCTGAGGTCGAAATACAATAAGTaGTCTCTCCCAGCCTACAACCAGGATGGTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: KLIKVLRSKYNK*SLPAYNQDGLL Trigger: AAGAAGACCATCCTGGTTGTAGGCTGGGAGAGAGCACTTATTGTATTTCGACCTCAGAACTTTAATCAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CAA 90 bp | GTTCCAGATTTTCAACCATCCATCAGAATCTCCAGTGGCAAGGTATaGATTCAGTTTATCAGTAGACATAATGATGGATCCAACACCAGC | + |
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Preference number: 6 (lower is better) Translates to: VPDFQPSIRISSGKV*IQFISRHNDGSNTS Trigger: GCTGGTGTTGGATCCATCATTATGTCTACTGATAAACTGAATCAATACCTTGCCACTGGAGATTCTGATGGATGGTTGAAAATCTGGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CAA 90 bp | ACATTTTCCAGGGAAACCAAACTTGTCACCCACAGGTGTTTGAGTTaGATGGCATCTGAAGTGATAGGAAGTGATTCTTGCAACTTTAAG | + |
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Preference number: 6 (lower is better) Translates to: TFSRETKLVTHRCLS*MASEVIGSDSCNFK Trigger: CTTAAAGTTGCAAGAATCACTTCCTATCACTTCAGATGCCATCAAACTCAAACACCTGTGGGTGACAAGTTTGGTTTCCCTGGAAAATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 90 bp | TTGTTAACATTTTCCAGGGAAACCAAACTTGTCACCCACAGGTGTTaGAGTTTGATGGCATCTGAAGTGATAGGAAGTGATTCTTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LLTFSRETKLVTHRC*SLMASEVIGSDSCN Trigger: GTTGCAAGAATCACTTCCTATCACTTCAGATGCCATCAAACTCAAACACCTGTGGGTGACAAGTTTGGTTTCCCTGGAAAATGTTAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS TCA 72 bp | CAAAGACCTGTTGTATCTTCACAAAATCCTCCACACTaGGCTTGTTTTCAAAGAGGTCTGTACCATAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: QRPVVSSQNPPH*ACFQRGLYHSL Trigger: AAGACTATGGTACAGACCTCTTTGAAAACAAGCTCAGTGTGGAGGATTTTGTGAAGATACAACAGGTCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203169.3 |
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| CDS TCA 72 bp | TTCAACCATCCATCAGAATCTCCAGTGGCAAGGTATTaGTTCAGTTTATCAGTAGACATAATGATGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: FNHPSESPVARY*FSLSVDIMMDP Trigger: TGGATCCATCATTATGTCTACTGATAAACTGAATCAATACCTTGCCACTGGAGATTCTGATGGATGGTTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CAA 72 bp | TTTGGGGAAAGAACAGGTTATCCTTTGAATGGACAGTaGATGCTGAATATCCCAGAGTCTCAAAACTTTATC | + |
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Preference number: 6 (lower is better) Translates to: FGERTGYPLNGQ*MLNIPESQNFI Trigger: GATAAAGTTTTGAGACTCTGGGATATTCAGCATCAACTGTCCATTCAAAGGATAACCTGTTCTTTCCCCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000193989.4 ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS GCA 72 bp | AGTTTGATGGCATCTGAAGTGATAGGAAGTGATTCTTaGAACTTTAAGTTTTCTCCCCAGATTCCTAGTAAT | + |
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Preference number: 6 (lower is better) Translates to: SLMASEVIGSDS*NFKFSPQIPSN Trigger: ATTACTAGGAATCTGGGGAGAAAACTTAAAGTTGCAAGAATCACTTCCTATCACTTCAGATGCCATCAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000203169.3 ENSMUST00000204341.3 |
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| CDS CAA 72 bp | CTGAAATTCATTTCTTCTGTTGATAGGTGTGTCGAGTaGTCTTCATCTTCCTCAGTAAGTAGAGAATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: LKFISSVDRCVE*SSSSSVSRECS Trigger: AGAACATTCTCTACTTACTGAGGAAGATGAAGACAACTCGACACACCTATCAACAGAAGAAATGAATTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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| CDS CAA 90 bp | TATTTCAGACTGAAATTCATTTCTTCTGTTGATAGGTGTGTCGAGTaGTCTTCATCTTCCTCAGTAAGTAGAGAATGTTCTGTTGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: YFRLKFISSVDRCVE*SSSSSVSRECSVES Trigger: AGACTCAACAGAACATTCTCTACTTACTGAGGAAGATGAAGACAACTCGACACACCTATCAACAGAAGAAATGAATTTCAGTCTGAAATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193989.4 |
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