RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDR26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038733

Ensembl transcript IDs: ENSMUST00000036329.12, ENSMUST00000159290.2, ENSMUST00000159673.8, ENSMUST00000162819.9, ENSMUST00000162963.8, ENSMUST00000237749.2

Found 381 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGTCTGAAGCTTGTCCAGCAGTTTGGACCGGGACGCTGTGCCCTTaGCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCGGCATGGCTGC +
Preference number: 1 (lower is better)
Translates to: RSEACPAVWTGTLCP*LPIQLLPVGLRHGC
Trigger: GCAGCCATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCTTCAGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 90 bp ACGGCGTCAGTTCGCAGCGTAGAACTTGAAGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCAGGTACTTCTGCTGCAGCAGCAGAA +
Preference number: 1 (lower is better)
Translates to: TASVRSVELEVPPGP*RPPGIPGTSAAAAE
Trigger: TTCTGCTGCTGCAGCAGAAGTACCTGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGAACTGACGCCGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR TCA 90 bp CGCTCGGTGTTGTATTTCAACGGCGTCAGTTCGCAGCGTAGAACTTaGAGTGCCTCCAGGACCTTGCCGTCCTCCAGGTATTCCAGGTAC +
Preference number: 1 (lower is better)
Translates to: RSVLYFNGVSSQRRT*SASRTLPSSRYSRY
Trigger: GTACCTGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGAACTGACGCCGTTGAAATACAACACCGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 90 bp AATCTGCTGACTCCGATCTGTCACCTCCTTACGATGGGTGGACTTTaGGAGAATGACCACTGCCTTCCTGGCTTTTCCCTCCCTGCGACC +
Preference number: 1 (lower is better)
Translates to: NLLTPICHLLTMGGL*ENDHCLPGFSLPAT
Trigger: GGTCGCAGGGAGGGAAAAGCCAGGAAGGCAGTGGTCATTCTCCCAAAGTCCACCCATCGTAAGGAGGTGACAGATCGGAGTCAGCAGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 90 bp GTAAATAGGTCTGAAGCTTGTCCAGCAGTTTGGACCGGGACGCTGTaGCCTTGCCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCGGCAT +
Preference number: 1 (lower is better)
Translates to: VNRSEACPAVWTGTL*PCLPIQLLPVGLRH
Trigger: ATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCTTCAGACCTATTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 90 bp GCATCACTGATGGTGGTAAATAGGTCTGAAGCTTGTCCAGCAGTTTaGACCGGGACGCTGTGCCCTTGCCTTCCCATTCAGCTTTTGCCC +
Preference number: 1 (lower is better)
Translates to: ASLMVVNRSEACPAV*TGTLCPCLPIQLLP
Trigger: GGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCTTCAGACCTATTTACCACCATCAGTGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 90 bp GCCCTGATGGGTACAGCCCTCAGGGAGCATCATGCACATGCCACGTaGTACACTGTAACCACATCTGTAAACAGCTGTGGAGTTCTGTGC +
Preference number: 1 (lower is better)
Translates to: ALMGTALREHHAHAT*YTVTTSVNSCGVLC
Trigger: GCACAGAACTCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATGCTCCCTGAGGGCTGTACCCATCAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 90 bp GATGGAATCTGTGGGTTCCAGCTAACACAATTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATTGGCAGTTCACTACGTTTGTGCCAG +
Preference number: 1 (lower is better)
Translates to: DGICGFQLTQFTVRV*PVSSAIGSSLRLCQ
Trigger: CTGGCACAAACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGCTGGAACCCACAGATTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 90 bp CAAAACTGCCCTGATGGGTACAGCCCTCAGGGAGCATCATGCACATaGCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGAGT +
Preference number: 1 (lower is better)
Translates to: QNCPDGYSPQGASCT*HVVHCNHICKQLWS
Trigger: ACTCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATGCTCCCTGAGGGCTGTACCCATCAGGGCAGTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp GTAGAACTGACCACGCTGACCTCCCGTCACAAAGCGTTTCCCATCTaGATTCCAGGCCACACTGGTCAAACTGTCTTCATGAGATTGGCT +
Preference number: 1 (lower is better)
Translates to: VELTTLTSRHKAFPI*IPGHTGQTVFMRLA
Trigger: AGCCAATCTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATCCAGATGGGAAACGCTTTGTGACGGGAGGTCAGCGTGGTCAGTTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 90 bp TGGATACAAAACTGCCCTGATGGGTACAGCCCTCAGGGAGCATCATaGACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTG +
Preference number: 1 (lower is better)
Translates to: WIQNCPDGYSPQGAS*TCHVVHCNHICKQL
Trigger: CAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATGCTCCCTGAGGGCTGTACCCATCAGGGCAGTTTTGTATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp TATCTCTCTGGCTTTCCTGTGCCGTGTCCTTCTGAACACTGTTTCTaGCCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTA +
Preference number: 1 (lower is better)
Translates to: YLSGFPVPCPSEHCF*PCHVSRGTPEEHQL
Trigger: TAACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGTTCAGAAGGACACGGCACAGGAAAGCCAGAGAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp AAAAAGGGGAAAGTATCTCTCTGGCTTTCCTGTGCCGTGTCCTTCTaGACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGA +
Preference number: 1 (lower is better)
Translates to: KKGKVSLWLSCAVSF*TLFLTMPCLTWHSR
Trigger: TCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGTTCAGAAGGACACGGCACAGGAAAGCCAGAGAGATACTTTCCCCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 90 bp CTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATaGTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATTT +
Preference number: 1 (lower is better)
Translates to: LSLLSGSRGAYDHGE*YGLGLASRASCTRF
Trigger: AAATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 90 bp TGCTGTAAAGTAAACGACATAGGCATTGCCCCCGTTCAAGAGATGTaGAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTG +
Preference number: 1 (lower is better)
Translates to: CCKVNDIGIAPVQEM*KTCTQGRQRVSSCL
Trigger: CAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTGCACATCTCTTGAACGGGGGCAATGCCTATGTCGTTTACTTTACAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp GCACGCTCTTACCTCCCAGTGTTTTTAAATGTACTTCAGAAGCAGTaGACAGGCGGGTCTAGGTGCAGCTGGATACAAAACTGCCCTGAT +
Preference number: 1 (lower is better)
Translates to: ARSYLPVFLNVLQKQ*TGGSRCSWIQNCPD
Trigger: ATCAGGGCAGTTTTGTATCCAGCTGCACCTAGACCCGCCTGTTCACTGCTTCTGAAGTACATTTAAAAACACTGGGAGGTAAGAGCGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp GCTAACACAATTTACTGTGCGCGTGTGCCCTGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTGCCAGATGTAAACCTTGTGATCTTC +
Preference number: 1 (lower is better)
Translates to: ANTIYCARVPCELRN*QFTTFVPDVNLVIF
Trigger: GAAGATCACAAGGTTTACATCTGGCACAAACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 90 bp ACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGAGTTCTGTaGCCACATGGTGTTAGGGATTGTTACTGTAGACTGAGGTGTATG +
Preference number: 1 (lower is better)
Translates to: TWYTVTTSVNSCGVL*PHGVRDCYCRLRCM
Trigger: CATACACCTCAGTCTACAGTAACAATCCCTAACACCATGTGGGCACAGAACTCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp GACCTCCCGTCACAAAGCGTTTCCCATCTGGATTCCAGGCCACACTaGTCAAACTGTCTTCATGAGATTGGCTCATTTTTGTTCTTAATT +
Preference number: 1 (lower is better)
Translates to: DLPSQSVSHLDSRPH*SNCLHEIGSFLFLI
Trigger: AATTAAGAACAAAAATGAGCCAATCTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATCCAGATGGGAAACGCTTTGTGACGGGAGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 90 bp AGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACCGATaGGGAATAATTCAACATGGTGTCCAACAACGTTCTAGACGCGCT +
Preference number: 1 (lower is better)
Translates to: SSMGKPECSTVLHNR*GIIQHGVQQRSRRA
Trigger: AGCGCGTCTAGAACGTTGTTGGACACCATGTTGAATTATTCCCCATCGGTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp AACCTCCAGAGCAACACCCAGCGTCTTTACATGATCTCTACAGCTTaGTTTATAAGCACATACATGCTTTCGGGATCTCCCTCAGGAAAA +
Preference number: 1 (lower is better)
Translates to: NLQSNTQRLYMISTA*FISTYMLSGSPSGK
Trigger: TTTTCCTGAGGGAGATCCCGAAAGCATGTATGTGCTTATAAACCAAGCTGTAGAGATCATGTAAAGACGCTGGGTGTTGCTCTGGAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp CGTTTCCCATCTGGATTCCAGGCCACACTGGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTTCTTAATTCTCCCGTCTGTACATTC +
Preference number: 1 (lower is better)
Translates to: RFPSGFQATLVKLSS*DWLIFVLNSPVCTF
Trigger: GAATGTACAGACGGGAGAATTAAGAACAAAAATGAGCCAATCTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATCCAGATGGGAAACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR TCA 90 bp GTGGAGTTCTGTGCCCACATGGTGTTAGGGATTGTTACTGTAGACTaGGGTGTATGGATTAATGGCTTCAGGGTATATCAATCAAAAGAT +
Preference number: 1 (lower is better)
Translates to: VEFCAHMVLGIVTVD*GVWINGFRVYQSKD
Trigger: ATCTTTTGATTGATATACCCTGAAGCCATTAATCCATACACCTCAGTCTACAGTAACAATCCCTAACACCATGTGGGCACAGAACTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp TGTAATATTGAGAGTGCTTTTGACATAGTTCACTGGTTTATCATCTaGTCAGCATATACTGCGCAACGGGCAAGGCTAGAATCCATGAAC +
Preference number: 1 (lower is better)
Translates to: CNIESAFDIVHWFII*SAYTAQRARLESMN
Trigger: GTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATATGCTGATCAGATGATAAACCAGTGAACTATGTCAAAAGCACTCTCAATATTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp ACTGTCCACAGCACCAGTTTGAATGAGGTTCATTATGGCAACATCTaGGAAGCTGAGAAGGAATCTTCTTTAAATGAGTGTCCCTATATG +
Preference number: 1 (lower is better)
Translates to: TVHSTSLNEVHYGNI*EAEKESSLNECPYM
Trigger: CATATAGGGACACTCATTTAAAGAAGATTCCTTCTCAGCTTCTCAGATGTTGCCATAATGAACCTCATTCAAACTGGTGCTGTGGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp ACCATAAACCCTAGCTTTCTTCACCTTTCTACCACACTCACTTCATaGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCA +
Preference number: 1 (lower is better)
Translates to: TINPSFLHLSTTLTS*QIYETDAYSKLAQS
Trigger: TGACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGTGTGGTAGAAAGGTGAAGAAAGCTAGGGTTTATGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp TGGTACTTTTCAGTTTATACATTGGTTAGCATCTTGTGGCAGGCTTaGCAGAATTCTCTTAAGCCTTTATCGAGTTTATCACAATGTCAG +
Preference number: 1 (lower is better)
Translates to: WYFSVYTLVSILWQA*QNSLKPLSSLSQCQ
Trigger: CTGACATTGTGATAAACTCGATAAAGGCTTAAGAGAATTCTGTCAAGCCTGCCACAAGATGCTAACCAATGTATAAACTGAAAAGTACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 90 bp TCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACAAGCTTTCTTaGAAACCTAGACTGATGCTGATCTTCTGTACTGGTTTATTTATA +
Preference number: 1 (lower is better)
Translates to: SKRFPQVQRTWNKLS*KPRLMLIFCTGLFI
Trigger: TATAAATAAACCAGTACAGAAGATCAGCATCAGTCTAGGTTTTCAAGAAAGCTTGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 90 bp AATACGACTAATTTTAAGTTAAACAGAAGTCGTCTGCTCCAAATTTaGCATCAACTATCCATGCTACTGCATTCCTCTTCAATATTCTGG +
Preference number: 1 (lower is better)
Translates to: NTTNFKLNRSRLLQI*HQLSMLLHSSSIFW
Trigger: CCAGAATATTGAAGAGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAACTTAAAATTAGTCGTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 90 bp CAGTTACACTGCATATCTCAGTCACAGAGGACACTGTTTTTAAGCTaGTTTAGATTCCAAATGTATACAAATGAAGTCACTTTAATCCTA +
Preference number: 1 (lower is better)
Translates to: QLHCISQSQRTLFLS*FRFQMYTNEVTLIL
Trigger: TAGGATTAAAGTGACTTCATTTGTATACATTTGGAATCTAAACCAGCTTAAAAACAGTGTCCTCTGTGACTGAGATATGCAGTGTAACTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 90 bp TTTGATCTATGTGCAAAAAGTATTGGTACTTTTCAGTTTATACATTaGTTAGCATCTTGTGGCAGGCTTGACAGAATTCTCTTAAGCCTT +
Preference number: 1 (lower is better)
Translates to: FDLCAKSIGTFQFIH*LASCGRLDRILLSL
Trigger: AAGGCTTAAGAGAATTCTGTCAAGCCTGCCACAAGATGCTAACCAATGTATAAACTGAAAAGTACCAATACTTTTTGCACATAGATCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp GGTGCTGGTCCCCATATTCTAACAGTGCCATCGTCTGAGGCACTGGCCATCATGGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCA +
Preference number: 2 (lower is better)
Translates to: GAGPHILTVPSSEALAIMVPPGP*RPPGIP
Trigger: TGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCAC...CATGATGGCCAGTGCCTCAGACGATGGCACTGTTAGAATATGGGGACCAGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR TCA 90 bp ATTTCCGTCCAGGTCACACTGGTAGAACTGACCACGCTGACCTCCCGTCACAAATCGCAGCGTAGAACTTaGAGTGCCTCCAGGACCTTG +
Preference number: 2 (lower is better)
Translates to: ISVQVTLVELTTLTSRHKSQRRT*SASRTL
Trigger: CAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGA...TTTGTGACGGGAGGTCAGCGTGGTCAGTTCTACCAGTGTGACCTGGACGGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR GCA 90 bp CGGACTCTCTGGTGCGTGTCGGAAGCCAGCACAGTCTTCCCGTCACTCAAGCACAGCAGTTTTAACAGGTaGGTATCCGGATCAACTTGC +
Preference number: 2 (lower is better)
Translates to: RTLWCVSEASTVFPSLKHSSFNR*VSGSTC
Trigger: GCAAGTTGATCCGGATACGCACCTGTTAAAACTGCT...GTGCTTGAGTGACGGGAAGACTGTGCTGGCTTCCGACACGCACCAGAGAGTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACGGGAAAGTATCTCTCTaGCTTTCCTGTGCCGTGTCC +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNGKVSL*LSCAVS
Trigger: GGACACGGCACAGGAAAGCCAGAGAGATACTTTCCC...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTGGACCGGGACGCTGTaGCCTTGCCTTCCCATTCAG +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRWTGTL*PCLPIQ
Trigger: CTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR GCA 90 bp GGTGCGTGTCGGAAGCCAGCACAGTCTTCCCGTCACTCAAGCACCACAGGCACTGTATCCGGATCAACTTaGCATATGATAACTGTGGTA +
Preference number: 2 (lower is better)
Translates to: GACRKPAQSSRHSSTTGTVSGST*HMITVV
Trigger: TACCACAGTTATCATATGGCAAGTTGATCCGGATAC...AGTGCCTGTGGTGCTTGAGTGACGGGAAGACTGTGCTGGCTTCCGACACGCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp GGTGCTGGTCCCCATATTCTAACAGTGCCATCGTCTGAGGCACTGGCCATCATGTGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 2 (lower is better)
Translates to: GAGPHILTVPSSEALAIMCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...CATGATGGCCAGTGCCTCAGACGATGGCACTGTTAGAATATGGGGACCAGCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACACGATGGGTGGACTTTaGGAGAATGACCACTGCCTT +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNTMGGL*ENDHCL
Trigger: AAGGCAGTGGTCATTCTCCCAAAGTCCACCCATCGT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp CGGACTCTCTGGTGCGTGTCGGAAGCCAGCACAGTCTTCCCGTCACTCAAGCACCTCCTACTACAAACATaGTCTATAAGTAGAGACACA +
Preference number: 2 (lower is better)
Translates to: RTLWCVSEASTVFPSLKHLLLQT*SISRDT
Trigger: TGTGTCTCTACTTATAGATCATGTTTGTAGTAGGAG...GTGCTTGAGTGACGGGAAGACTGTGCTGGCTTCCGACACGCACCAGAGAGTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp ATCTGTGGGTTCCAGCTAACACAATTTACTGTGCGCGTGTGCCCTGTGAGCTCCGATTCCAGGCCACACTaGTCAAACTGTCTTCATGAG +
Preference number: 2 (lower is better)
Translates to: ICGFQLTQFTVRVCPVSSDSRPH*SNCLHE
Trigger: CTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATC...GGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGCTGGAACCCACAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATGATTTCAAGGGAGACTaGTTAGACCCAGCAATTATG +
Preference number: 2 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHDFKGD*LDPAIM
Trigger: CATAATTGCTGGGTCTAACCAGTCTCCCTTGAAATC...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACATCTGTAAACAGCTGTaGAGTTCTGTGCCCACATGG +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNICKQL*SSVPTW
Trigger: CCATGTGGGCACAGAACTCCACAGCTGTTTACAGAT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACCAAGGTGTAAATGTTTaGCCCCAATCGGGCTTCAAA +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNQGVNV*PQSGFK
Trigger: TTTGAAGCCCGATTGGGGCCAAACATTTACACCTTG...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAGGGAAAGTATCTCTCTaGCTTTCCTGTGCCGTGTCC +
Preference number: 2 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQGKVSL*LSCAVS
Trigger: GGACACGGCACAGGAAAGCCAGAGAGATACTTTCCC...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATTCTCTGGCTTTCCTGTaGCGTGTCCTTCTGAACACT +
Preference number: 2 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDSLAFL*RVLLNT
Trigger: AGTGTTCAGAAGGACACGGCACAGGAAAGCCAGAGA...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCTCCTTCCAAGAGCTGTaGTCACCCTGGTTATCTCCT +
Preference number: 2 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGSFQEL*SPWLSP
Trigger: AGGAGATAACCAGGGTGACCACAGCTCTTGGAAGGA...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACATGCTTACAGCAAATTaGCACAGTCAAGTACCAGTC +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNMLTAN*HSQVPV
Trigger: GACTGGTACTTGACTGTGCCAATTTGCTGTAAGCAT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACAAGAAAATTTCAAGATaGGGAGGGGTGGGAAAGGAT +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNKKISR*GGVGKD
Trigger: ATCCTTTCCCACCCCTCCCCATCTTGAAATTTTCTT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp GGATCCCGAGGGGCATATGATCATGGTGAATGCTATGGACTTGGCTaGGCCTCAAGGGCAAGTTGTACCAGATTTTTGTTGTTGTTGTTC +
Preference number: 2 (lower is better)
Translates to: GSRGAYDHGECYGLG*ASRASCTRFLLLLF
Trigger: GAACAACAACAACAAAAATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGATCATATGCCCCTCGGGATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ACAGGCACTGTACTCGCACTCCTTCCCAGGAGTCCAGAAGATTTCCGTCCAGGTGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTT +
Preference number: 2 (lower is better)
Translates to: TGTVLALLPRSPEDFRPGVKLSS*DWLIFV
Trigger: AACAAAAATGAGCCAATCTCATGAAGACAGTTTGAC...ACCTGGACGGAAATCTTCTGGACTCCTGGGAAGGAGTGCGAGTACAGTGCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR TCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCTCTGAACACTGTTTCTaGCCATGCCATGTCTCACGT +
Preference number: 2 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGSEHCF*PCHVSR
Trigger: ACGTGAGACATGGCATGGTCAGAAACAGTGTTCAGA...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACATCCATGAACCAAGCTaGAAAGATCTCACGCTAAAT +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNIHEPS*KDLTLN
Trigger: ATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGAT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATGAGCATCAGTTACACTaGATATCTCAGTCACAGAGG +
Preference number: 2 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNEHQLH*ISQSQR
Trigger: CCTCTGTGACTGAGATATGCAGTGTAACTGATGCTC...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTTCTCTGGCTTTCCTGTaGCGTGTCCTTCTGAACACT +
Preference number: 2 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSSLAFL*RVLLNT
Trigger: AGTGTTCAGAAGGACACGGCACAGGAAAGCCAGAGA...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATCAAGGTGTAAATGTTTaGCCCCAATCGGGCTTCAAA +
Preference number: 2 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNQGVNV*PQSGFK
Trigger: TTTGAAGCCCGATTGGGGCCAAACATTTACACCTTG...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGATGCCATGTCTCACGTaGCACTCCAGAAGAGCATCA +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRMPCLT*HSRRAS
Trigger: TGATGCTCTTCTGGAGTGCCACGTGAGACATGGCAT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTCCTTCCAAGAGCTGTaGTCACCCTGGTTATCTCCT +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRSFQEL*SPWLSP
Trigger: AGGAGATAACCAGGGTGACCACAGCTCTTGGAAGGA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTACGATGGGTGGACTTTaGGAGAATGACCACTGCCTT +
Preference number: 2 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSTMGGL*ENDHCL
Trigger: AAGGCAGTGGTCATTCTCCCAAAGTCCACCCATCGT...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATCAGCACCAGTTTGAATaGGGTTCATTATGGCAACAT +
Preference number: 2 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNQHQFE*GSLWQH
Trigger: ATGTTGCCATAATGAACCTCATTCAAACTGGTGCTG...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATTCCACAGCACCAGTTTaGATGAGGTTCATTATGGCA +
Preference number: 2 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDSTAPV*MRFIMA
Trigger: TGCCATAATGAACCTCATTCAAACTGGTGCTGTGGA...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 2 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp ATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAACGTAGGTCTTCGGCATaGCTGCACATCAGATACCCA +
Preference number: 2 (lower is better)
Translates to: MTSMSVQLSIMFVCTKSQRRSSA*LHIRYP
Trigger: TGGGTATCTGATGTGCAGCCATGCCGAAGACCTACG...TTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCGTTATGTTCTGGTCATaGCCCTCACCTTCGGGGCAC +
Preference number: 2 (lower is better)
Translates to: THFMANIRNRCLQQIGTVVMFWS*PSPSGH
Trigger: GTGCCCCGAAGGTGAGGGCCATGACCAGAACATAAC...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACACCACACTCACTTCATaGCAAATATACGAAACAGAT +
Preference number: 2 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNTTLTS*QIYETD
Trigger: ATCTGTTTCGTATATTTGCCATGAAGTGAGTGTGGT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp TCCACTTTTCCTTCCAAGAGCTGTGGTCACCCTGGTTATCTCCTATaGGAAAACATGGATTTCAAGGGAGACTGGTTAGACCCAGCAATT +
Preference number: 2 (lower is better)
Translates to: STFPSKSCGHPGYLL*ENMDFKGDWLDPAI
Trigger: AATTGCTGGGTCTAACCAGTCTCCCTTGAAATCCATGTTTTCCAATAGGAGATAACCAGGGTGACCACAGCTCTTGGAAGGAAAAGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp ACACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATaGGCACAGTCAAGTACCAGTCTAGAGAGGGAGCGGCCAGTTAAG +
Preference number: 2 (lower is better)
Translates to: TLTSWQIYETDAYSK*AQSSTSLERERPVK
Trigger: CTTAACTGGCCGCTCCCTCTCTAGACTGGTACTTGACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp AGAGATGTGCAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTaGTTTGCAGGAACCAACATCCTAGAAAAGAAAATTTCAAGATGG +
Preference number: 2 (lower is better)
Translates to: RDVQDVYPREAEGQF*FAGTNILEKKISRW
Trigger: CCATCTTGAAATTTTCTTTTCTAGGATGTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTGCACATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp AAACCTCCAGAGCAACACCCAGCGTCTTTACATGATCTCTACAGCTaGGTTTATAAGCACATACATGCTTTCGGGATCTCCCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: KPPEQHPASLHDLYS*VYKHIHAFGISLRK
Trigger: TTTCCTGAGGGAGATCCCGAAAGCATGTATGTGCTTATAAACCAAGCTGTAGAGATCATGTAAAGACGCTGGGTGTTGCTCTGGAGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCATTATGGCAACATCTaGGAAGCTGAGAAGGAATCT +
Preference number: 2 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDHYGNI*EAEKES
Trigger: AGATTCCTTCTCAGCTTCTCAGATGTTGCCATAATG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACTGATCAGCATATACTaGGCAACGGGCAAGGCTAGA +
Preference number: 2 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATLISIY*ATGKAR
Trigger: TCTAGCCTTGCCCGTTGCGCAGTATATGCTGATCAG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTATGATCATGGTGAATaGTATGGACTTGGCTTGGCC +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRYDHGE*YGLGLA
Trigger: GGCCAAGCCAAGTCCATAGCATTCACCATGATCATA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACAAGCTGTGGAGTTCTGTaGCCACATGGTGTTAGGGAT +
Preference number: 2 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATSCGVL*PHGVRD
Trigger: ATCCCTAACACCATGTGGGCACAGAACTCCACAGCT...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAAACGCGCTTCATCAACTaGTTACTAGGAAGCAAGGTG +
Preference number: 2 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQTRFIN*LLGSKV
Trigger: CACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGT...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATCAAGTATCAAGGTGGTaGGGAAAACTTTCCAGACCT +
Preference number: 2 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHQVSRW*GKLSRP
Trigger: AGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTG...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
3UTR-3UTR CCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCATGCCATGTCTCACGTaGCACTCCAGAAGAGCATCA +
Preference number: 2 (lower is better)
Translates to: THFMANIRNRCLQQIGTVMPCLT*HSRRAS
Trigger: TGATGCTCTTCTGGAGTGCCACGTGAGACATGGCAT...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCAGTGTCCCTATATGTTaGACATTAAGGGCAATTAGG +
Preference number: 2 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGSVPIC*TLRAIR
Trigger: CCTAATTGCCCTTAATGTCCAACATATAGGGACACT...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAAATCTGTAAACAGCTGTaGAGTTCTGTGCCCACATGG +
Preference number: 2 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQICKQL*SSVPTW
Trigger: CCATGTGGGCACAGAACTCCACAGCTGTTTACAGAT...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTCCACAGCACCAGTTTaGATGAGGTTCATTATGGCA +
Preference number: 2 (lower is better)
Translates to: SFCLLNRQKGDTKDWASASTAPV*MRFIMA
Trigger: TGCCATAATGAACCTCATTCAAACTGGTGCTGTGGA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCAGCAATTATGGAGTTaGAAACACCATGAACATCAA +
Preference number: 2 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDQQLWS*KHHEHQ
Trigger: TTGATGTTCATGGTGTTTTCAACTCCATAATTGCTG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCCCAGCGTCTTTACATaGTCTCTACAGCTTGGTTTA +
Preference number: 2 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAPSVFT*SLQLGL
Trigger: TAAACCAAGCTGTAGAGATCATGTAAAGACGCTGGG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAATATTCCAGGTACTTCTaGTGCAGCAGCAGAAACTTC +
Preference number: 2 (lower is better)
Translates to: MTSMSVQLSIMFVCTKSQYSRYF*CSSRNF
Trigger: GAAGTTTCTGCTGCTGCAGCAGAAGTACCTGGAATA...TTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTATGATCATGGTGAATaGTATGGACTTGGCTTGGCC +
Preference number: 2 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAYDHGE*YGLGLA
Trigger: GGCCAAGCCAAGTCCATAGCATTCACCATGATCATA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTCCTCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRSSSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGAGGA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACAGTTAAGACAGACTTaGAAACCGAACTCACCTAGC +
Preference number: 2 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATQLRQT*KPNSPS
Trigger: GCTAGGTGAGTTCGGTTTCCAAGTCTGTCTTAACTG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGCAACATCTGAGAAGCTaGGAAGGAATCTTCTTTAAA +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRQHLRS*EGIFFK
Trigger: TTTAAAGAAGATTCCTTCTCAGCTTCTCAGATGTTG...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTTTACAGCTTGTTTTTaGAACTCTAGGGCAGCGACT +
Preference number: 2 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAFTACF*NSRAAT
Trigger: AGTCGCTGCCCTAGAGTTGCAAAAACAAGCTGTAAA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGCATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 2 (lower is better)
Translates to: WRNERKFFPVQCILFRLMHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACAGATTTCAAGGGAGACTaGTTAGACCCAGCAATTATG +
Preference number: 2 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATDFKGD*LDPAIM
Trigger: CATAATTGCTGGGTCTAACCAGTCTCCCTTGAAATC...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 90 bp AATTCACCCTTTAAGTTAGCAGTTTATGTGAAATCAGGTATGGTTTaGGAAATGGTGGGAATGCTTTGGCCAGCAACACAAAGGGAGAGT +
Preference number: 2 (lower is better)
Translates to: NSPFKLAVYVKSGMV*EMVGMLWPATQRES
Trigger: ACTCTCCCTTTGTGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATAAACTGCTAACTTAAAGGGTGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCCACTGGTTTATCATCTaGTCAGCATATACTGCGCAA +
Preference number: 2 (lower is better)
Translates to: THFMANIRNRCLQQIGTVHWFII*SAYTAQ
Trigger: TTGCGCAGTATATGCTGATCAGATGATAAACCAGTG...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAAATTGTTACTGTAGACTaGGGTGTATGGATTAATGGC +
Preference number: 2 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQIVTVD*GVWING
Trigger: GCCATTAATCCATACACCTCAGTCTACAGTAACAAT...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGAACTATCCATGCTACTaGATTCCTCTTCAATATTCT +
Preference number: 2 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRNYPCY*IPLQYS
Trigger: AGAATATTGAAGAGGAATGCAGTAGCATGGATAGTT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR GCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATGCCATCAACTATCCATaGTACTGCATTCCTATAAAA +
Preference number: 2 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHAINYP*YCIPIK
Trigger: TTTTATAGGAATGCAGTAGCATGGATAGTTGATGGC...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
3UTR-3UTR GCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACTCCTCCCATTCTTCTaGTGTAAAGTAAACGACATA +
Preference number: 2 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATLLPFF*CKVNDI
Trigger: TATGTCGTTTACTTTACAGCAGAAGAATGGGAGGAG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACTACCCACTAAGGACATaGATGCGCTCGGTGTTGTAT +
Preference number: 2 (lower is better)
Translates to: IYILSSMGKPECSTVLHNYPLRT*MRSVLY
Trigger: ATACAACACCGAGCGCATCCATGTCCTTAGTGGGTA...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR TCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCAACATCTGAGAAGCTaGGAAGGAATCTTCTTTAAA +
Preference number: 2 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAQHLRS*EGIFFK
Trigger: TTTAAAGAAGATTCCTTCTCAGCTTCTCAGATGTTG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAACTGGTTATCTCCTATTaGAAAACATGGATTTCAAGG +
Preference number: 2 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQLVISY*KTWISR
Trigger: CCTTGAAATCCATGTTTTCCAATAGGAGATAACCAG...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR TCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGCAGCACCAGTTTGAATaGGGTTCATTATGGCAACAT +
Preference number: 2 (lower is better)
Translates to: WRNERKFFPVQCILFRLMQHQFE*GSLWQH
Trigger: ATGTTGCCATAATGAACCTCATTCAAACTGGTGCTG...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR GCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCTCAATCATGTTTGTTTaGACCAAATCCCAAGCCATT +
Preference number: 2 (lower is better)
Translates to: THFMANIRNRCLQQIGTVSIMFV*TKSQAI
Trigger: AATGGCTTGGGATTTGGTGCAAACAAACATGATTGA...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGCTGGTTATCTCCTATTaGAAAACATGGATTTCAAGG +
Preference number: 2 (lower is better)
Translates to: WRNERKFFPVQCILFRLMLVISY*KTWISR
Trigger: CCTTGAAATCCATGTTTTCCAATAGGAGATAACCAG...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp GCTTGTCCAGCAGTTTGGACCGGGACGCTGTGCCCTTaGCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCGG +
Preference number: 3 (lower is better)
Translates to: ACPAVWTGTLCP*LPIQLLPVGLR
Trigger: CCGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 72 bp TCTGAAGCTTGTCCAGCAGTTTGGACCGGGACGCTGTaGCCTTGCCTTCCCATTCAGCTTTTGCCCGTAGGT +
Preference number: 3 (lower is better)
Translates to: SEACPAVWTGTL*PCLPIQLLPVG
Trigger: ACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCTTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATTGCTATGGACTTGGCTaGGCCTCAAGGGCAAGTTGT +
Preference number: 3 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHCYGLG*ASRASC
Trigger: ACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCA...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp GTTCGCAGCGTAGAACTTGAAGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCAGGTACTTCTGCTGCA +
Preference number: 3 (lower is better)
Translates to: VRSVELEVPPGP*RPPGIPGTSAA
Trigger: TGCAGCAGAAGTACCTGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGAAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATGCAAGGTGTAAATGTTaGGCCCCAATCGGGCTTCAA +
Preference number: 3 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHARCKC*APIGLQ
Trigger: TTGAAGCCCGATTGGGGCCAAACATTTACACCTTGC...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp GTAAACGACATAGGCATTGCCCCCGTTCAAGAGATGTaGAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGT +
Preference number: 3 (lower is better)
Translates to: VNDIGIAPVQEM*KTCTQGRQRVS
Trigger: ACTGACCCTCTGCCTCCCTTGGGTACACGTCTTGCACATCTCTTGAACGGGGGCAATGCCTATGTCGTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 72 bp ATGGTGGTAAATAGGTCTGAAGCTTGTCCAGCAGTTTaGACCGGGACGCTGTGCCCTTGCCTTCCCATTCAG +
Preference number: 3 (lower is better)
Translates to: MVVNRSEACPAV*TGTLCPCLPIQ
Trigger: CTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCTTCAGACCTATTTACCACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 72 bp ACCACGCTGACCTCCCGTCACAAAGCGTTTCCCATCTaGATTCCAGGCCACACTGGTCAAACTGTCTTCATG +
Preference number: 3 (lower is better)
Translates to: TTLTSRHKAFPI*IPGHTGQTVFM
Trigger: CATGAAGACAGTTTGACCAGTGTGGCCTGGAATCCAGATGGGAAACGCTTTGTGACGGGAGGTCAGCGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 72 bp ACTCCGATCTGTCACCTCCTTACGATGGGTGGACTTTaGGAGAATGACCACTGCCTTCCTGGCTTTTCCCTC +
Preference number: 3 (lower is better)
Translates to: TPICHLLTMGGL*ENDHCLPGFSL
Trigger: GAGGGAAAAGCCAGGAAGGCAGTGGTCATTCTCCCAAAGTCCACCCATCGTAAGGAGGTGACAGATCGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATGTCCACAGCACCAGTTaGAATGAGGTTCATTATGGC +
Preference number: 3 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHVHSTS*NEVHYG
Trigger: GCCATAATGAACCTCATTCAAACTGGTGCTGTGGAC...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TTGTATTTCAACGGCGTCAGTTCGCAGCGTAGAACTTaGAGTGCCTCCAGGACCTTGCCGTCCTCCAGGTAT +
Preference number: 3 (lower is better)
Translates to: LYFNGVSSQRRT*SASRTLPSSRY
Trigger: ATACCTGGAGGACGGCAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGAACTGACGCCGTTGAAATACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR TCA 72 bp AGGTGCTGGTCCCCATATTCTAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGATGGAATCTGTGGGTT +
Preference number: 3 (lower is better)
Translates to: RCWSPYSNSAIV*GTGHHGWNLWV
Trigger: AACCCACAGATTCCATCCATGATGGCCAGTGCCTCAGACGATGGCACTGTTAGAATATGGGGACCAGCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 72 bp TGTGGGTTCCAGCTAACACAATTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATTGGCAGTTCACTACGT +
Preference number: 3 (lower is better)
Translates to: CGFQLTQFTVRV*PVSSAIGSSLR
Trigger: ACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGCTGGAACCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 72 bp CTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATaGTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGT +
Preference number: 3 (lower is better)
Translates to: LSGSRGAYDHGE*YGLGLASRASC
Trigger: ACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGATCATATGCCCCTCGGGATCCTGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp CCTGATGGGTACAGCCCTCAGGGAGCATCATGCACATaGCACGTGGTACACTGTAACCACATCTGTAAACAG +
Preference number: 3 (lower is better)
Translates to: PDGYSPQGASCT*HVVHCNHICKQ
Trigger: CTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATGCTCCCTGAGGGCTGTACCCATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 72 bp TCGGCATGGCTGCACATCAGATACCCACTAAGGACATaGATGCGCTCGGTGTTGTATTTCAACGGCGTCAGT +
Preference number: 3 (lower is better)
Translates to: SAWLHIRYPLRT*MRSVLYFNGVS
Trigger: ACTGACGCCGTTGAAATACAACACCGAGCGCATCCATGTCCTTAGTGGGTATCTGATGTGCAGCCATGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 72 bp CCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCGGCATaGCTGCACATCAGATACCCACTAAGGACATGGATG +
Preference number: 3 (lower is better)
Translates to: PSHSAFARRSSA*LHIRYPLRTWM
Trigger: CATCCATGTCCTTAGTGGGTATCTGATGTGCAGCCATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 72 bp GGTACAGCCCTCAGGGAGCATCATGCACATGCCACGTaGTACACTGTAACCACATCTGTAAACAGCTGTGGA +
Preference number: 3 (lower is better)
Translates to: GTALREHHAHAT*YTVTTSVNSCG
Trigger: TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATGCTCCCTGAGGGCTGTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCCGGGACGCTGTGCCCTaGCCTTCCCATTCAGCTTTT +
Preference number: 3 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGRDAVP*PSHSAF
Trigger: AAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCG...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp ACAGGCACTGTACTCGCACTCCTTCCCAGGAGTCCAGAAGATTTCCGTCCAGGTCGTATCCGGATCAACTaGCCATATGATAACTGTGGT +
Preference number: 3 (lower is better)
Translates to: TGTVLALLPRSPEDFRPGRIRIN*PYDNCG
Trigger: ACCACAGTTATCATATGGCAAGTTGATCCGGATACG...ACCTGGACGGAAATCTTCTGGACTCCTGGGAAGGAGTGCGAGTACAGTGCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACCCCATGCTAATTCTTTaGATCACCACCCACAAACCA +
Preference number: 3 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNPMLIL*ITTHKP
Trigger: TGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGG...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp AAAGTATCTCTCTGGCTTTCCTGTGCCGTGTCCTTCTaGACACTGTTTCTGACCATGCCATGTCTCACGTGG +
Preference number: 3 (lower is better)
Translates to: KVSLWLSCAVSF*TLFLTMPCLTW
Trigger: CCACGTGAGACATGGCATGGTCAGAAACAGTGTTCAGAAGGACACGGCACAGGAAAGCCAGAGAGATACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp GGGAGGGAGAGGGAAAGACTGTCCACAGCACCAGTTTaGATGAGGTTCATTATGGCAACATCTGAGAAGCTG +
Preference number: 3 (lower is better)
Translates to: GRERERLSTAPV*MRFIMATSEKL
Trigger: CAGCTTCTCAGATGTTGCCATAATGAACCTCATTCAAACTGGTGCTGTGGACAGTCTTTCCCTCTCCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 72 bp ATTTACTGTGCGCGTGTGCCCTGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTGCCAGATGTAAACCTT +
Preference number: 3 (lower is better)
Translates to: IYCARVPCELRN*QFTTFVPDVNL
Trigger: AAGGTTTACATCTGGCACAAACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACGCGCACAGTAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTGCTATGGACTTGGCTaGGCCTCAAGGGCAAGTTGT +
Preference number: 3 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRCYGLG*ASRASC
Trigger: ACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp ATCTGTGGGTTCCAGCTAACACAATTTACTGTGCGCGTGTGCCCTGTGAGCTCCGAGATTGGCTCATTTTaGTTCTTAATTCTCCCGTCT +
Preference number: 3 (lower is better)
Translates to: ICGFQLTQFTVRVCPVSSEIGSF*FLILPS
Trigger: AGACGGGAGAATTAAGAACAAAAATGAGCCAATCTC...GGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGCTGGAACCCACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTGCAAGGTGTAAATGTTaGGCCCCAATCGGGCTTCAA +
Preference number: 3 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSARCKC*APIGLQ
Trigger: TTGAAGCCCGATTGGGGCCAAACATTTACACCTTGC...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACAGTGCCTCCAGGACCTaGCCGTCCTCCAGGTATTCC +
Preference number: 3 (lower is better)
Translates to: IYILSSMGKPECSTVLHNSASRT*PSSRYS
Trigger: GGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACT...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 72 bp TGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTaGAAAGATCTCACGCTAAATAAGGCGGAAAGATTT +
Preference number: 3 (lower is better)
Translates to: CATGKARIHEPS*KDLTLNKAERF
Trigger: AAATCTTTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp TACCAAGAGCTCTGTGTTAGCTACATCACACCACAATaGCCTATCCCTTTCCATAGCTCAGAAACCTCCAGA +
Preference number: 3 (lower is better)
Translates to: YQELCVSYITPQ*PIPFHSSETSR
Trigger: TCTGGAGGTTTCTGAGCTATGGAAAGGGATAGGGCATTGTGGTGTGATGTAGCTAACACAGAGCTCTTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACAGCAAGGTGTAAATGTTaGGCCCCAATCGGGCTTCAA +
Preference number: 3 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATARCKC*APIGLQ
Trigger: TTGAAGCCCGATTGGGGCCAAACATTTACACCTTGC...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TACCTCCCAGTGTTTTTAAATGTACTTCAGAAGCAGTaGACAGGCGGGTCTAGGTGCAGCTGGATACAAAAC +
Preference number: 3 (lower is better)
Translates to: YLPVFLNVLQKQ*TGGSRCSWIQN
Trigger: GTTTTGTATCCAGCTGCACCTAGACCCGCCTGTTCACTGCTTCTGAAGTACATTTAAAAACACTGGGAGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp CATAGTTCACTGGTTTATCATCTGATCAGCATATACTaGGCAACGGGCAAGGCTAGAATCCATGAACCAAGC +
Preference number: 3 (lower is better)
Translates to: HSSLVYHLISIY*ATGKARIHEPS
Trigger: GCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATATGCTGATCAGATGATAAACCAGTGAACTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp ACTGTAACCACATCTGTAAACAGCTGTGGAGTTCTGTaGCCACATGGTGTTAGGGATTGTTACTGTAGACTG +
Preference number: 3 (lower is better)
Translates to: TVTTSVNSCGVL*PHGVRDCYCRL
Trigger: CAGTCTACAGTAACAATCCCTAACACCATGTGGGCACAGAACTCCACAGCTGTTTACAGATGTGGTTACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp CGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTaGAGGAACCAACATCCTAGAAAAGAAAATTTCAAG +
Preference number: 3 (lower is better)
Translates to: RVPKGGRGSVLV*RNQHPRKENFK
Trigger: CTTGAAATTTTCTTTTCTAGGATGTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CCA 72 bp AGCAACACCCAGCGTCTTTACATGATCTCTACAGCTTaGTTTATAAGCACATACATGCTTTCGGGATCTCCC +
Preference number: 3 (lower is better)
Translates to: SNTQRLYMISTA*FISTYMLSGSP
Trigger: GGGAGATCCCGAAAGCATGTATGTGCTTATAAACCAAGCTGTAGAGATCATGTAAAGACGCTGGGTGTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAATCAATCATGTTTGTTaGCACCAAATCCCAAGCCAT +
Preference number: 3 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQINHVC*HQIPSH
Trigger: ATGGCTTGGGATTTGGTGCAAACAAACATGATTGAT...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTGTCCACAGCACCAGTTaGAATGAGGTTCATTATGGC +
Preference number: 3 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAVHSTS*NEVHYG
Trigger: GCCATAATGAACCTCATTCAAACTGGTGCTGTGGAC...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCCTGGTTATCTCCTATaGGAAAACATGGATTTCAAG +
Preference number: 3 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDPGYLL*ENMDFK
Trigger: CTTGAAATCCATGTTTTCCAATAGGAGATAACCAGG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TCTGGATTCCAGGCCACACTGGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTTCTTAATTCTCCCGTC +
Preference number: 3 (lower is better)
Translates to: SGFQATLVKLSS*DWLIFVLNSPV
Trigger: GACGGGAGAATTAAGAACAAAAATGAGCCAATCTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CCA 72 bp GGTAAGCCTGAATGTAGCACAGTTCTTCACAACCGATaGGGAATAATTCAACATGGTGTCCAACAACGTTCT +
Preference number: 3 (lower is better)
Translates to: GKPECSTVLHNR*GIIQHGVQQRS
Trigger: AGAACGTTGTTGGACACCATGTTGAATTATTCCCCATCGGTTGTGAAGAACTGTGCTACATTCAGGCTTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCAATGAACTCCCTGAGTaGCTACATTTAACAAAGCTA +
Preference number: 3 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGNELPE*LHLTKL
Trigger: TAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGATCAATCATGTTTGTTaGCACCAAATCCCAAGCCAT +
Preference number: 3 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRINHVC*HQIPSH
Trigger: ATGGCTTGGGATTTGGTGCAAACAAACATGATTGAT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGAGCTATCAATCATGTTaGTTTGCACCAAATCCCAAG +
Preference number: 3 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRSYQSC*FAPNPK
Trigger: CTTGGGATTTGGTGCAAACAAACATGATTGATAGCT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCGTTCATCAGGATACATaGGAGTTAATTCCACTTTTC +
Preference number: 3 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGVHQDT*ELIPLF
Trigger: GAAAAGTGGAATTAACTCCAATGTATCCTGATGAAC...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAGTTCATCAGGATACATaGGAGTTAATTCCACTTTTC +
Preference number: 3 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQVHQDT*ELIPLF
Trigger: GAAAAGTGGAATTAACTCCAATGTATCCTGATGAAC...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAACCCATGCTAATTCTTTaGATCACCACCCACAAACCA +
Preference number: 3 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQPMLIL*ITTHKP
Trigger: TGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGG...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TGTGCCCACATGGTGTTAGGGATTGTTACTGTAGACTaGGGTGTATGGATTAATGGCTTCAGGGTATATCAA +
Preference number: 3 (lower is better)
Translates to: CAHMVLGIVTVD*GVWINGFRVYQ
Trigger: TTGATATACCCTGAAGCCATTAATCCATACACCTCAGTCTACAGTAACAATCCCTAACACCATGTGGGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TTCCCTCAAGTTCAGAGAACTTGGAACAAGCTTTCTTaGAAACCTAGACTGATGCTGATCTTCTGTACTGGT +
Preference number: 3 (lower is better)
Translates to: FPQVQRTWNKLS*KPRLMLIFCTG
Trigger: ACCAGTACAGAAGATCAGCATCAGTCTAGGTTTTCAAGAAAGCTTGTTCCAAGTTCTCTGAACTTGAGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAATCAAGTTCAGAGAACTaGGAACAAGCTTTCTTGAAA +
Preference number: 3 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQSSSEN*EQAFLK
Trigger: TTTCAAGAAAGCTTGTTCCAAGTTCTCTGAACTTGA...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTTTTCAGTTTATACATaGGTTAGCATCTTGTGGCAG +
Preference number: 3 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAFSVYT*VSILWQ
Trigger: CTGCCACAAGATGCTAACCAATGTATAAACTGAAAA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR-3UTR CAA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGCTCTGTAAGTATCTGTaGAGTGTAACAGGGAAACTG +
Preference number: 3 (lower is better)
Translates to: WRNERKFFPVQCILFRLMLCKYL*SVTGKL
Trigger: CAGTTTCCCTGTTACACTCAACAGATACTTACAGAG...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR-3UTR CAA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCATAAGGCGGAAAGATTaGGAGAAACGAAAGGAAATT +
Preference number: 3 (lower is better)
Translates to: THFMANIRNRCLQQIGTVIRRKD*EKRKEI
Trigger: AATTTCCTTTCGTTTCTCCAAATCTTTCCGCCTTAT...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TGGTTAGACCCAGCAATTATGGAGTTGAAAACACCATaGACATCAATCAGGCTTATGTTAGATATAGGGTCT +
Preference number: 3 (lower is better)
Translates to: WLDPAIMELKTP*TSIRLMLDIGS
Trigger: AGACCCTATATCTAACATAAGCCTGATTGATGTTCATGGTGTTTTCAACTCCATAATTGCTGGGTCTAACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp ACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTaGACCAAATCCCAAGCCATTAAAATACGACTAATT +
Preference number: 3 (lower is better)
Translates to: TSMSVQLSIMFV*TKSQAIKIRLI
Trigger: AATTAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036329.12
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR TCA 72 bp TCAGTTTATACATTGGTTAGCATCTTGTGGCAGGCTTaGCAGAATTCTCTTAAGCCTTTATCGAGTTTATCA +
Preference number: 3 (lower is better)
Translates to: SVYTLVSILWQA*QNSLKPLSSLS
Trigger: TGATAAACTCGATAAAGGCTTAAGAGAATTCTGTCAAGCCTGCCACAAGATGCTAACCAATGTATAAACTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR GCA 72 bp AATTTTAAGTTAAACAGAAGTCGTCTGCTCCAAATTTaGCATCAACTATCCATGCTACTGCATTCCTCTTCA +
Preference number: 3 (lower is better)
Translates to: NFKLNRSRLLQI*HQLSMLLHSSS
Trigger: TGAAGAGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAACTTAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR GCA 72 bp GAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATaGTACTGCATTCCTATAAAATTTATTACTTCTCTC +
Preference number: 3 (lower is better)
Translates to: EVVCSKFAINYP*YCIPIKFITSL
Trigger: GAGAGAAGTAATAAATTTTATAGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
3UTR GCA 72 bp AATTTTAAGTTAAACAGAAGTCGTCTGCTCCAAATTTaGCATCAACTATCCATGCTACTGCATTCCTATAAA +
Preference number: 3 (lower is better)
Translates to: NFKLNRSRLLQI*HQLSMLLHSYK
Trigger: TTTATAGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAACTTAAAATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp GTCCAGGTCACACTGGTAGAACTGACCACGCTGACCTCCCGTCACAAAGCGTTTCAGGCAGGAGCCCGTTaGCGTGGGCCAGGTCCCCCG +
Preference number: 4 (lower is better)
Translates to: VQVTLVELTTLTSRHKAFQAGAR*RGPGPP
Trigger: CGGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTG...AAACGCTTTGTGACGGGAGGTCAGCGTGGTCAGTTCTACCAGTGTGACCTGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CCA 90 bp TTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTACACTGAGGAGCCCGTTGGCGTaGGCCAGGTCCCCCGCGGAC +
Preference number: 4 (lower is better)
Translates to: FLTMPCLTWHSRRASVTLRSPLA*ARSPAD
Trigger: GTCCGCGGGGGACCTGGCCCACGCCAACGGGCTCCT...CAGTGTAACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCAGGAGCCCGTTGGCGTaGGCCAGGTCCCCCGCGGAC +
Preference number: 4 (lower is better)
Translates to: IYCATGKARIHEPSCKDLRSPLA*ARSPAD
Trigger: GTCCGCGGGGGACCTGGCCCACGCCAACGGGCTCCT...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp ACCGGGACGCTGTGCCCTTGCCTTCCCATTCAGCTTTaGCCCGTAGGTCTTCGGCATGGCTGCACATCAGAT +
Preference number: 4 (lower is better)
Translates to: TGTLCPCLPIQL*PVGLRHGCTSD
Trigger: ATCTGATGTGCAGCCATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CAA 72 bp AGCTTGTCCAGCAGTTTGGACCGGGACGCTGTGCCCTaGCCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCG +
Preference number: 4 (lower is better)
Translates to: SLSSSLDRDAVP*PSHSAFARRSS
Trigger: CGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCAAACTGCTGGACAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR TCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGA +
Preference number: 4 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHNSAIV*GTGHHG
Trigger: TCCATGATGGCCAGTGCCTCAGACGATGGCACTGTT...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATGCATGGTGCCGCCGCTaGCCAGGCTGTGGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHAWCRR*PGCGRC
Trigger: GCAGCGGCCACAGCCTGGTCAGCGGCGGCACCATGC...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCGACGACTCCCCGTTCTaGGCCGACAGGCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: IYCATGKARIHEPSCKDLDDSPF*ADRQAS
Trigger: GCTCGCCTGCCTGTCGGCGCAGAACGGGGAGTCGTC...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHTSSSD*ESRFFF
Trigger: GAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGT...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GGTGCTGGTCCCCATATTCTAACAGTGCCATCGTCTGAGGCACTGGCCATCATGCGGGAACCCCGTTATTaGCACTCAGGCTGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: GAGPHILTVPSSEALAIMREPRY*HSGCCY
Trigger: ATAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCG...CATGATGGCCAGTGCCTCAGACGATGGCACTGTTAGAATATGGGGACCAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR TCA 90 bp TTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTACACTGTGCGCGTGTGCCCTGTaGGCTCCGCAATTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: FLTMPCLTWHSRRASVTLCACAL*APQLAV
Trigger: AACTGCCAATTGCGGAGCTCACAGGGCACACGCGCA...CAGTGTAACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGA +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNNSAIV*GTGHHG
Trigger: TCCATGATGGCCAGTGCCTCAGACGATGGCACTGTT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp GAAGATTTCCGTCCAGGTCACACTGGTAGAACTGACCACGCTGACCTCCCGTCAACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: EDFRPGHTGRTDHADLPSTSSSD*ESRFFF
Trigger: GAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGT...TGACGGGAGGTCAGCGTGGTCAGTTCTACCAGTGTGACCTGGACGGAAATCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATAGGAGATCAACAGTCTaGTTGAGCCCTAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHRRSTV*LSPRPL
Trigger: CAATGGCCTAGGGCTCAACCAGACTGTTGATCTCCT...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACACTCCTCCCGCCCCGTTaGCCTGCATGGTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTLLPPR*PAWCRR
Trigger: GCGGCGGCACCATGCAGGCCAACGGGGCGGGAGGAG...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGACGACTCCCCGTTCTaGGCCGACAGGCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: MTSMSVQLSIMFVCTKSQDDSPF*ADRQAS
Trigger: GCTCGCCTGCCTGTCGGCGCAGAACGGGGAGTCGTC...TTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATCGACATCCTGACTCTTaGATGAGGAGATCAACAGTC +
Preference number: 4 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHRHPDS*MRRSTV
Trigger: GACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCG...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACTGTAGTTCCACCGCCTaGCGCAGGAGAGTCTGTAAA +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNCSSTA*RRRVCK
Trigger: TTTACAGACTCTCCTGCGGCAGGCGGTGGAACTACA...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAAAGGAGCCCGTTGGCGTaGGCCAGGTCCCCCGCGGAC +
Preference number: 4 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKRSPLA*ARSPAD
Trigger: GTCCGCGGGGGACCTGGCCCACGCCAACGGGCTCCT...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATTCGCAGCGTAGAACTTaGAGTGCCTCCAGGACCTTG +
Preference number: 4 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNSQRRT*SASRTL
Trigger: CAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGA...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCA +
Preference number: 4 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGVPPGP*RPPGIP
Trigger: TGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCAC...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTACAGGCAGGAGCCCGTTaGCGTGGGCCAGGTCCCCCG +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLQAGAR*RGPGPP
Trigger: CGGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTG...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGTGCGCGTGTGCCCTGTaGGCTCCGCAATTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPCACAL*APQLAV
Trigger: AACTGCCAATTGCGGAGCTCACAGGGCACACGCGCA...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR TCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAATGCGCGTGTGCCCTGTaGGCTCCGCAATTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAECACAL*APQLAV
Trigger: AACTGCCAATTGCGGAGCTCACAGGGCACACGCGCA...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGAAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGA +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGNSAIV*GTGHHG
Trigger: TCCATGATGGCCAGTGCCTCAGACGATGGCACTGTT...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCA +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRVPPGP*RPPGIP
Trigger: TGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCAC...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCATGGACCGGGACGCTGTaGCCTTGCCTTCCCATTCAG +
Preference number: 4 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPWTGTL*PCLPIQ
Trigger: CTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCA...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTAGGCACTGGCCATCATaGATGGAATCTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVRHWPS*MESVGS
Trigger: GGAACCCACAGATTCCATCCATGATGGCCAGTGCCT...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGACGGGAACCCCGTTATTaGCACTCAGGCTGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGREPRY*HSGCCY
Trigger: ATAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCG...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAATGCGCGTGTGCCCTGTaGGCTCCGCAATTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQCACAL*APQLAV
Trigger: AACTGCCAATTGCGGAGCTCACAGGGCACACGCGCA...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp AATGAACTCCCTGAGTTGCTACATTTAACAAAGCTAATCGGCCATTTTTGGAAAGACGACTCCCCGTTCTaGGCCGACAGGCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: NELPELLHLTKLIGHFWKDDSPF*ADRQAS
Trigger: GCTCGCCTGCCTGTCGGCGCAGAACGGGGAGTCGTC...TTTCCAAAAATGGCCGATTAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR GCA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACGACGACTCCCCGTTCTaGGCCGACAGGCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: IYILSSMGKPECSTVLHNDDSPF*ADRQAS
Trigger: GCTCGCCTGCCTGTCGGCGCAGAACGGGGAGTCGTC...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAAGGCTGTTGCTATTGTTaGCAGCGGCGGAGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKGCCYC*QRRRGR
Trigger: CCGCCCCCTCCGCCGCTGGCAACAATAGCAACAGCC...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TGCCTTCCCATTCAGCTTTTGCCCGTAGGTCTTCGGCATGGCTGCACATCAGATTTGGTAGCAGAAGGATaGTCTAAACGACATCCTGAC +
Preference number: 4 (lower is better)
Translates to: CLPIQLLPVGLRHGCTSDLVAEG*SKRHPD
Trigger: GTCAGGATGTCGTTTAGAGCATCCTTCTGCTACCAA...ATCTGATGTGCAGCCATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR GCA 90 bp CGTGTGCCCTGTGAGCTCCGCAATTGGCAGTTCACTACGTTTGTGCCAGATGTAATTCAGGTCATTCTCTaGCTTATCCCAGTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: RVPCELRNWQFTTFVPDVIQVIL*LIPVSF
Trigger: GAAGGAGACTGGGATAAGGCAGAGAATGACCTGAAT...TACATCTGGCACAAACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR GCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACTATTCCAGGTACTTCTaGTGCAGCAGCAGAAACTTC +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNYSRYF*CSSRNF
Trigger: GAAGTTTCTGCTGCTGCAGCAGAAGTACCTGGAATA...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAAGTGCCTCCAGGACCTTaGCGTCCTCCAGGTATTCCA +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAEVPPGP*RPPGIP
Trigger: TGGAATACCTGGAGGACGGCAAGGTCCTGGAGGCAC...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTGGACCGGGACGCTGTaGCCTTGCCTTCCCATTCAG +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAWTGTL*PCLPIQ
Trigger: CTGAATGGGAAGGCAAGGGCACAGCGTCCCGGTCCA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGATGTAGTTCCACCGCCTaGCGCAGGAGAGTCTGTAAA +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGCSSTA*RRRVCK
Trigger: TTTACAGACTCTCCTGCGGCAGGCGGTGGAACTACA...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACAGCAGTTTTAACAGGTaGGTATCCGGATCAACTTGC +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNSSFNR*VSGSTC
Trigger: GCAAGTTGATCCGGATACGCACCTGTTAAAACTGCT...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCAGGCACTGGCCATCATaGATGGAATCTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGRHWPS*MESVGS
Trigger: GGAACCCACAGATTCCATCCATGATGGCCAGTGCCT...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGACGTAGGTCTTCGGCATaGCTGCACATCAGATACCCA +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGRRSSA*LHIRYP
Trigger: TGGGTATCTGATGTGCAGCCATGCCGAAGACCTACG...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp ATCAGATACCCACTAAGGACATGGATGCGCTCGGTGTaGTATTTCAACGGCGTCAGTTCGCAGCGTAGAACT +
Preference number: 4 (lower is better)
Translates to: IRYPLRTWMRSV*YFNGVSSQRRT
Trigger: AGTTCTACGCTGCGAACTGACGCCGTTGAAATACAACACCGAGCGCATCCATGTCCTTAGTGGGTATCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
3UTR CAA 72 bp CCCGAGGGGCATATGATCATGGTGAATGCTATGGACTaGGCTTGGCCTCAAGGGCAAGTTGTACCAGATTTT +
Preference number: 4 (lower is better)
Translates to: PEGHMIMVNAMD*AWPQGQVVPDF
Trigger: AAAATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGATCATATGCCCCTCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGCGGGAACCCCGTTATTaGCACTCAGGCTGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRREPRY*HSGCCY
Trigger: ATAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCG...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACTCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCA +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNSPSMT*FRNLVA
Trigger: TGCTACCAAATTCCGAAATCATGTCATGGAAGGAGA...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGA +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPNSAIV*GTGHHG
Trigger: TCCATGATGGCCAGTGCCTCAGACGATGGCACTGTT...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR TCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATAACAGTGCCATCGTCTaGGGCACTGGCCATCATGGA +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHNSAIV*GTGHHG
Trigger: TCCATGATGGCCAGTGCCTCAGACGATGGCACTGTT...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTACACTGCTTACCACAATAGCGTaGGGAGAATGCACTAAAGGC +
Preference number: 4 (lower is better)
Translates to: FLTMPCLTWHSRRASVTLLTTIA*GECTKG
Trigger: GCCTTTAGTGCATTCTCCTCACGCTATTGTGGTAAG...CAGTGTAACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATAGGAGATCAACAGTCTaGTTGAGCCCTAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDRRSTV*LSPRPL
Trigger: CAATGGCCTAGGGCTCAACCAGACTGTTGATCTCCT...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATTGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 4 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCATCCTGACTCTTGCATaGGGAGATCAACAGTCTGGT +
Preference number: 4 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGILTLA*GDQQSG
Trigger: ACCAGACTGTTGATCTCCTCATGCAAGAGTCAGGAT...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCATCCTCACAATAGCGTaGGGAGAATGCACTAAAGGC +
Preference number: 4 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGILTIA*GECTKG
Trigger: GCCTTTAGTGCATTCTCCTCACGCTATTGTGAGGAT...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162963.8
CDS-3UTR GCA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAACGACATCCTGACTCTTaGATGAGGAGATCAACAGTC +
Preference number: 4 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQRHPDS*MRRSTV
Trigger: GACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCG...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTATTCAGGTCATTCTCTaGCTTATCCCAGTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVIQVIL*LIPVSF
Trigger: GAAGGAGACTGGGATAAGGCAGAGAATGACCTGAAT...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACAGAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATGCTACTGCATTCCTTTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATT +
Preference number: 4 (lower is better)
Translates to: TEVVCSKFAINYPCYCIPFTVRV*PVSSAI
Trigger: AATTGCGGAGCTCACAGGGCACACGCGCACAGTAAA...AGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR GCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATT +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHFTVRV*PVSSAI
Trigger: AATTGCGGAGCTCACAGGGCACACGCGCACAGTAAA...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTACACTGGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: FLTMPCLTWHSRRASVTLVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...CAGTGTAACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATAACTATCCATGCTACTaGATTCCTCTTCAATATTCT +
Preference number: 4 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHNYPCY*IPLQYS
Trigger: AGAATATTGAAGAGGAATGCAGTAGCATGGATAGTT...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CTTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCAGGCACTGGCCATCATaGATGGAATCTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LHLQVSRWWGKLSRPRFARHWPS*MESVGS
Trigger: GGAACCCACAGATTCCATCCATGATGGCCAGTGCCT...GGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATAGGCACTGGCCATCATaGATGGAATCTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHRHWPS*MESVGS
Trigger: GGAACCCACAGATTCCATCCATGATGGCCAGTGCCT...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGATACCCACTAAGGACATaGATGCGCTCGGTGTTGTAT +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGYPLRT*MRSVLY
Trigger: ATACAACACCGAGCGCATCCATGTCCTTAGTGGGTA...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCGGGCGATTCCAGGCCACACTaGTCAAACTGTCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: LHQLVTRKQGVNVWPQSGDSRPH*SNCLHE
Trigger: CTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATC...GCCCGATTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACCCTTGGGTAACACCTTaGTATTTCCTTACTAAAACT +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNPWVTP*YFLTKT
Trigger: AGTTTTAGTAAGGAAATATCAAGGTGTTACCCAAGG...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TTGTCCTCATCTGTTAGCTTTATGACTTTCTTCATCTTCAAGTATCAAGGTGGTTGCGCGTGTGCCCTGTaGGCTCCGCAATTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: LSSSVSFMTFFIFKYQGGCACAL*APQLAV
Trigger: AACTGCCAATTGCGGAGCTCACAGGGCACACGCGCA...ACCACCTTGATACTTGAAGATGAAGAAAGTCATAAAGCTAACAGATGAGGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR TCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTTCAAGTTTGGTATTGTaGTATAGGCACCGATCCCTT +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVSSLVL*YRHRSL
Trigger: AAGGGATCGGTGCCTATATCACAATACCAAACTTGA...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTTGTTTGCAGGAACCAACGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTT +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQFLFAGTNVKLSS*DWLIFV
Trigger: AACAAAAATGAGCCAATCTCATGAAGACAGTTTGAC...GTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASATSSSD*ESRFFF
Trigger: GAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGT...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGCGACATCCTGACTCTTaGATGAGGAGATCAACAGTC +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRRHPDS*MRRSTV
Trigger: GACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCG...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTCGACATCCTGACTCTTaGATGAGGAGATCAACAGTC +
Preference number: 4 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSRHPDS*MRRSTV
Trigger: GACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCG...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCTTGGTAGCAGAAGGATaGTCTAAACGACATCCTGAC +
Preference number: 4 (lower is better)
Translates to: IYCATGKARIHEPSCKDLLVAEG*SKRHPD
Trigger: GTCAGGATGTCGTTTAGAGCATCCTTCTGCTACCAA...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTTTGAGAGATTTCAAGTaGGCCTCTTACCACAATAGC +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVLRDFK*ASYHNS
Trigger: GCTATTGTGGTAAGAGGCGCACTTGAAATCTCTCAA...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAAGCAGTTTTAACAGGTaGGTATCCGGATCAACTTGC +
Preference number: 4 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQSSFNR*VSGSTC
Trigger: GCAAGTTGATCCGGATACGCACCTGTTAAAACTGCT...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATCATGGATGGAATCTGTaGGTTCCAGCTAACACAATT +
Preference number: 4 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNHGWNL*VPANTI
Trigger: AATTGTGTTAGCTGGAACCCACAGATTCCATCCATG...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTAGGCACTGGCCATCATaGATGGAATCTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASARHWPS*MESVGS
Trigger: GGAACCCACAGATTCCATCCATGATGGCCAGTGCCT...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGCATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAACATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAEHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp CCTTCCAAGAGCTGTGGTCACCCTGGTTATCTCCTATaGGAAAACATGGATTTCAAGGGAGACTGGTTAGAC +
Preference number: 4 (lower is better)
Translates to: PSKSCGHPGYLL*ENMDFKGDWLD
Trigger: GTCTAACCAGTCTCCCTTGAAATCCATGTTTTCCAATAGGAGATAACCAGGGTGACCACAGCTCTTGGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp GGGGCATATGATCATGGTGAATGCTATGGACTTGGCTaGGCCTCAAGGGCAAGTTGTACCAGATTTTTGTTG +
Preference number: 4 (lower is better)
Translates to: GAYDHGECYGLG*ASRASCTRFLL
Trigger: CAACAAAAATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGATCATATGCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCCGGGAACCCCGTTATTaGCACTCAGGCTGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: THFMANIRNRCLQQIGTVREPRY*HSGCCY
Trigger: ATAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCG...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAATCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCA +
Preference number: 4 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQSPSMT*FRNLVA
Trigger: TGCTACCAAATTCCGAAATCATGTCATGGAAGGAGA...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GTTAAACAGAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATGCTACTGCATGTGCCACAATAGCGTaGGGAGAATGCACTAAAGGC +
Preference number: 4 (lower is better)
Translates to: VKQKSSAPNLPSTIHATACATIA*GECTKG
Trigger: GCCTTTAGTGCATTCTCCTCACGCTATTGTGGCACA...TGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR GCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: THFMANIRNRCLQQIGTVTSSSD*ESRFFF
Trigger: GAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGT...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGATTCAGGTCATTCTCTaGCTTATCCCAGTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRIQVIL*LIPVSF
Trigger: GAAGGAGACTGGGATAAGGCAGAGAATGACCTGAAT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACATTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATT +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTFTVRV*PVSSAI
Trigger: AATTGCGGAGCTCACAGGGCACACGCGCACAGTAAA...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGAGCAGTTTTAACAGGTaGGTATCCGGATCAACTTGC +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRSSFNR*VSGSTC
Trigger: GCAAGTTGATCCGGATACGCACCTGTTAAAACTGCT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTGTCATCTGGACTCCATaGTATATAAGAGACACCATA +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVVIWTP*YIRDTI
Trigger: TATGGTGTCTCTTATATAGCATGGAGTCCAGATGAC...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACAAGGAGATCAACAGTCTaGTTGAGCCCTAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATRRSTV*LSPRPL
Trigger: CAATGGCCTAGGGCTCAACCAGACTGTTGATCTCCT...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAATGAAGTCTTCATTATaGCCTCCAAAACACGAGTGG +
Preference number: 4 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQMKSSL*PPKHEW
Trigger: CCACTCGTGTTTTGGAGGCCATAATGAAGACTTCAT...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGTGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCATGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 4 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCATGGATGGAATCTGTaGGTTCCAGCTAACACAATT +
Preference number: 4 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDHGWNL*VPANTI
Trigger: AATTGTGTTAGCTGGAACCCACAGATTCCATCCATG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACACGTAGGTCTTCGGCATaGCTGCACATCAGATACCCA +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTRRSSA*LHIRYP
Trigger: TGGGTATCTGATGTGCAGCCATGCCGAAGACCTACG...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp TCATGGCAAATATACGAAACAGATGCTTACAGCAAATaGGCACAGTCAAGTACCAGTCTAGAGAGGGAGCGG +
Preference number: 4 (lower is better)
Translates to: SWQIYETDAYSK*AQSSTSLERER
Trigger: CCGCTCCCTCTCTAGACTGGTACTTGACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp CAAGACGTGTACCCAAGGGAGGCAGAGGGTCAGTTCTaGTTTGCAGGAACCAACATCCTAGAAAAGAAAATT +
Preference number: 4 (lower is better)
Translates to: QDVYPREAEGQF*FAGTNILEKKI
Trigger: AATTTTCTTTTCTAGGATGTTGGTTCCTGCAAACAAGAACTGACCCTCTGCCTCCCTTGGGTACACGTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp GAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTaGGCCAGCAACACAAAGGGAGAGTTGGTGATGTCT +
Preference number: 4 (lower is better)
Translates to: EIRYGFGNGGNA*ASNTKGELVMS
Trigger: AGACATCACCAACTCTCCCTTTGTGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
3UTR CAA 72 bp GAGCAACACCCAGCGTCTTTACATGATCTCTACAGCTaGGTTTATAAGCACATACATGCTTTCGGGATCTCC +
Preference number: 4 (lower is better)
Translates to: EQHPASLHDLYS*VYKHIHAFGIS
Trigger: GGAGATCCCGAAAGCATGTATGTGCTTATAAACCAAGCTGTAGAGATCATGTAAAGACGCTGGGTGTTGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAACTTACCACAATAGCGTaGGGAGAATGCACTAAAGGC +
Preference number: 4 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQLTTIA*GECTKG
Trigger: GCCTTTAGTGCATTCTCCTCACGCTATTGTGGTAAG...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAAATTCCCAACAACGTTTaGGAGATTTCAAGTGCGCCT +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAEIPNNV*EISSAP
Trigger: AGGCGCACTTGAAATCTCTCAAACGTTGTTGGGAAT...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTATCGCAGCGTAGAACTTaGAGTGCCTCCAGGACCTTG +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLSQRRT*SASRTL
Trigger: CAAGGTCCTGGAGGCACTTCAAGTTCTACGCTGCGA...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTT +
Preference number: 4 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVVKLSS*DWLIFV
Trigger: AACAAAAATGAGCCAATCTCATGAAGACAGTTTGAC...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATT +
Preference number: 4 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKFTVRV*PVSSAI
Trigger: AATTGCGGAGCTCACAGGGCACACGCGCACAGTAAA...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR GCA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATGTATCCGGATCAACTTaGCATATGATAACTGTGGTA +
Preference number: 4 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDVSGST*HMITVV
Trigger: TACCACAGTTATCATATGGCAAGTTGATCCGGATAC...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACATGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCCATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 4 (lower is better)
Translates to: THFMANIRNRCLQQIGTVHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACATACCCACTAAGGACATaGATGCGCTCGGTGTTGTAT +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATYPLRT*MRSVLY
Trigger: ATACAACACCGAGCGCATCCATGTCCTTAGTGGGTA...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTTACCCACTAAGGACATaGATGCGCTCGGTGTTGTAT +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAYPLRT*MRSVLY
Trigger: ATACAACACCGAGCGCATCCATGTCCTTAGTGGGTA...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATAAGATAGCTGTCATCTaGACTCCATGCTATATAAGA +
Preference number: 4 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNKIAVI*TPCYIR
Trigger: TCTTATATAGCATGGAGTCCAGATGACAGCTATCTT...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGATCCTCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGSSSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGAGGA...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAATCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCA +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAESPSMT*FRNLVA
Trigger: TGCTACCAAATTCCGAAATCATGTCATGGAAGGAGA...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCATCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCA +
Preference number: 4 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPSPSMT*FRNLVA
Trigger: TGCTACCAAATTCCGAAATCATGTCATGGAAGGAGA...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCCCTTGGGTAACACCTTaGTATTTCCTTACTAAAACT +
Preference number: 4 (lower is better)
Translates to: IYCATGKARIHEPSCKDLPWVTP*YFLTKT
Trigger: AGTTTTAGTAAGGAAATATCAAGGTGTTACCCAAGG...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTCAAGTTTGGTATTGTaGTATAGGCACCGATCCCTT +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHSSLVL*YRHRSL
Trigger: AAGGGATCGGTGCCTATATCACAATACCAAACTTGA...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTATTCAGGTCATTCTCTaGCTTATCCCAGTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAIQVIL*LIPVSF
Trigger: GAAGGAGACTGGGATAAGGCAGAGAATGACCTGAAT...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTGTCCTCATCTGTTAGCTTTATGACTTTCTTCATCTTCAAGTATCAAGGTGGTTTTACTGTGCGCGTGTaGCCTGTGAGCTCCGCAATT +
Preference number: 4 (lower is better)
Translates to: LSSSVSFMTFFIFKYQGGFTVRV*PVSSAI
Trigger: AATTGCGGAGCTCACAGGGCACACGCGCACAGTAAA...ACCACCTTGATACTTGAAGATGAAGAAAGTCATAAAGCTAACAGATGAGGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR GCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAAGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGGTCATCTGGACTCCATaGTATATAAGAGACACCATA +
Preference number: 4 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRVIWTP*YIRDTI
Trigger: TATGGTGTCTCTTATATAGCATGGAGTCCAGATGAC...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACAGAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATGCTACTGCATTCCTATGAAGTCTTCATTATaGCCTCCAAAACACGAGTGG +
Preference number: 4 (lower is better)
Translates to: TEVVCSKFAINYPCYCIPMKSSL*PPKHEW
Trigger: CCACTCGTGTTTTGGAGGCCATAATGAAGACTTCAT...AGGAATGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAATGAAGTCTTCATTATaGCCTCCAAAACACGAGTGG +
Preference number: 4 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPMKSSL*PPKHEW
Trigger: CCACTCGTGTTTTGGAGGCCATAATGAAGACTTCAT...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACATGTGAGCTCCGCAATTaGCAGTTCACTACGTTTGTG +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTCELRN*QFTTFV
Trigger: CACAAACGTAGTGAACTGCCAATTGCGGAGCTCACA...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAACATCGTCTGAGGCACTaGCCATCATGGATGGAATCT +
Preference number: 4 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKHRLRH*PSWMES
Trigger: AGATTCCATCCATGATGGCCAGTGCCTCAGACGATG...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTACGTAGGTCTTCGGCATaGCTGCACATCAGATACCCA +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLRRSSA*LHIRYP
Trigger: TGGGTATCTGATGTGCAGCCATGCCGAAGACCTACG...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCTCAGAGCAGTCATCTaGACCACAAGCAACAAGATA +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASALRAVI*TTSNKI
Trigger: TATCTTGTTGCTTGTGGTCCAGATGACTGCTCTGAG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACAGATTCCAGGCCACACTaGTCAAACTGTCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTDSRPH*SNCLHE
Trigger: CTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATC...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCTTGGTAGCAGAAGGATaGTCTAAACGACATCCTGAC +
Preference number: 4 (lower is better)
Translates to: THFMANIRNRCLQQIGTVLVAEG*SKRHPD
Trigger: GTCAGGATGTCGTTTAGAGCATCCTTCTGCTACCAA...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACATATTCCAGGTACTTCTaGTGCAGCAGCAGAAACTTC +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTYSRYF*CSSRNF
Trigger: GAAGTTTCTGCTGCTGCAGCAGAAGTACCTGGAATA...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAAGTATCCGGATCAACTTaGCATATGATAACTGTGGTA +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAEVSGST*HMITVV
Trigger: TACCACAGTTATCATATGGCAAGTTGATCCGGATAC...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATGTCATCTGGACTCCATaGTATATAAGAGACACCATA +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHVIWTP*YIRDTI
Trigger: TATGGTGTCTCTTATATAGCATGGAGTCCAGATGAC...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACAGGAGATCAACAGTCTaGTTGAGCCCTAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: IYILSSMGKPECSTVLHNRRSTV*LSPRPL
Trigger: CAATGGCCTAGGGCTCAACCAGACTGTTGATCTCCT...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACATGGATGGAATCTGTaGGTTCCAGCTAACACAATT +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATHGWNL*VPANTI
Trigger: AATTGTGTTAGCTGGAACCCACAGATTCCATCCATG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CTTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCTTCCCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: LHLQVSRWWGKLSRPRFAFPSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGGGAA...GGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTAAGATAGCTGTCATCTaGACTCCATGCTATATAAGA +
Preference number: 4 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSKIAVI*TPCYIR
Trigger: TCTTATATAGCATGGAGTCCAGATGACAGCTATCTT...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACACTCAGAGCAGTCATCTaGACCACAAGCAACAAGATA +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTLRAVI*TTSNKI
Trigger: TATCTTGTTGCTTGTGGTCCAGATGACTGCTCTGAG...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTCTTCAATATTCTGGTaGTCTATGAAAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHSSIFW*SMKGAG
Trigger: ACCAGCACCTTTCATAGACCACCAGAATATTGAAGA...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAATCTTCAATATTCTGGTaGTCTATGAAAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAESSIFW*SMKGAG
Trigger: ACCAGCACCTTTCATAGACCACCAGAATATTGAAGA...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAATCCTCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: KARIHEPSCKDLTLNKAESSSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGAGGA...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGCCTTGGGTAACACCTTaGTATTTCCTTACTAAAACT +
Preference number: 4 (lower is better)
Translates to: FIFKYQGGGENFPDLDLPPWVTP*YFLTKT
Trigger: AGTTTTAGTAAGGAAATATCAAGGTGTTACCCAAGG...CGGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR TCA 90 bp GAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATCCTTGGGTAACACCTTaGTATTTCCTTACTAAAACT +
Preference number: 4 (lower is better)
Translates to: EHVCPAINHVCLHQIPSHPWVTP*YFLTKT
Trigger: AGTTTTAGTAAGGAAATATCAAGGTGTTACCCAAGG...ATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACATCAAGTTTGGTATTGTaGTATAGGCACCGATCCCTT +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTSSLVL*YRHRSL
Trigger: AAGGGATCGGTGCCTATATCACAATACCAAACTTGA...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACAGTATCCGGATCAACTTaGCATATGATAACTGTGGTA +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATVSGST*HMITVV
Trigger: TACCACAGTTATCATATGGCAAGTTGATCCGGATAC...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp ATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAATTCCCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: MTSMSVQLSIMFVCTKSQFPSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGGGAA...TTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGGATTCCAGGCCACACTaGTCAAACTGTCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMDSRPH*SNCLHE
Trigger: CTCATGAAGACAGTTTGACCAGTGTGGCCTGGAATC...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACATTCCCAACAACGTTTaGGAGATTTCAAGTGCGCCT +
Preference number: 4 (lower is better)
Translates to: IYILSSMGKPECSTVLHNIPNNV*EISSAP
Trigger: AGGCGCACTTGAAATCTCTCAAACGTTGTTGGGAAT...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACTCCTACTACAAACATaGTCTATAAGTAGAGACACA +
Preference number: 4 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATLLLQT*SISRDT
Trigger: TGTGTCTCTACTTATAGATCATGTTTGTAGTAGGAG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAACTCCTACTACAAACATaGTCTATAAGTAGAGACACA +
Preference number: 4 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQLLLQT*SISRDT
Trigger: TGTGTCTCTACTTATAGATCATGTTTGTAGTAGGAG...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp ATATATATACTGAGTTCAATGGGTAAGCCTGAATGTAGCACAGTTCTTCACAACTTGGTAGCAGAAGGATaGTCTAAACGACATCCTGAC +
Preference number: 4 (lower is better)
Translates to: IYILSSMGKPECSTVLHNLVAEG*SKRHPD
Trigger: GTCAGGATGTCGTTTAGAGCATCCTTCTGCTACCAA...GTTGTGAAGAACTGTGCTACATTCAGGCTTACCCATTGAACTCAGTATATATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TTTAAGTTAAACAGAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATGCTAGTGGTCTATGAAAGGTaGTGGTCCCCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: FKLNRSRLLQICHQLSMLVVYER*WSPYSN
Trigger: GTTAGAATATGGGGACCAGCACCTTTCATAGACCAC...TAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAACTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAACATGGATGGAATCTGTaGGTTCCAGCTAACACAATT +
Preference number: 4 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKHGWNL*VPANTI
Trigger: AATTGTGTTAGCTGGAACCCACAGATTCCATCCATG...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTACTCAGAGCAGTCATCTaGACCACAAGCAACAAGATA +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLLRAVI*TTSNKI
Trigger: TATCTTGTTGCTTGTGGTCCAGATGACTGCTCTGAG...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACACTCCTACTACAAACATaGTCTATAAGTAGAGACACA +
Preference number: 4 (lower is better)
Translates to: TSARSHQNDSLKFRELGTLLLQT*SISRDT
Trigger: TGTGTCTCTACTTATAGATCATGTTTGTAGTAGGAG...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGTTGAGAGATTTCAAGTaGGCCTCTTACCACAATAGC +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMLRDFK*ASYHNS
Trigger: GCTATTGTGGTAAGAGGCGCACTTGAAATCTCTCAA...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR GCA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTAACTATCCATGCTACTaGATTCCTCTTCAATATTCT +
Preference number: 4 (lower is better)
Translates to: SFCLLNRQKGDTKDWASANYPCY*IPLQYS
Trigger: AGAATATTGAAGAGGAATGCAGTAGCATGGATAGTT...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTGTCCTCATCTGTTAGCTTTATGACTTTCTTCATCTTCAAGTATCAAGGTGGTATGAAGTCTTCATTATaGCCTCCAAAACACGAGTGG +
Preference number: 4 (lower is better)
Translates to: LSSSVSFMTFFIFKYQGGMKSSL*PPKHEW
Trigger: CCACTCGTGTTTTGGAGGCCATAATGAAGACTTCAT...ACCACCTTGATACTTGAAGATGAAGAAAGTCATAAAGCTAACAGATGAGGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGATGAAGTCTTCATTATaGCCTCCAAAACACGAGTGG +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMMKSSL*PPKHEW
Trigger: CCACTCGTGTTTTGGAGGCCATAATGAAGACTTCAT...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTGTCCTCATCTGTTAGCTTTATGACTTTCTTCATCTTCAAGTATCAAGGTGGTCATGGATGGAATCTGTaGGTTCCAGCTAACACAATT +
Preference number: 4 (lower is better)
Translates to: LSSSVSFMTFFIFKYQGGHGWNL*VPANTI
Trigger: AATTGTGTTAGCTGGAACCCACAGATTCCATCCATG...ACCACCTTGATACTTGAAGATGAAGAAAGTCATAAAGCTAACAGATGAGGACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGTCTTCAATATTCTGGTaGTCTATGAAAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMSSIFW*SMKGAG
Trigger: ACCAGCACCTTTCATAGACCACCAGAATATTGAAGA...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTATCCTCTTCAATATTCTaGTGGTCTATGAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLSSSIF*WSMKGA
Trigger: AGCACCTTTCATAGACCACCAGAATATTGAAGAGGA...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGCCTTGGGTAACACCTTaGTATTTCCTTACTAAAACT +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMPWVTP*YFLTKT
Trigger: AGTTTTAGTAAGGAAATATCAAGGTGTTACCCAAGG...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR TCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTAGTCAAACTGTCTTCATaGGATTGGCTCATTTTTGTT +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLVKLSS*DWLIFV
Trigger: AACAAAAATGAGCCAATCTCATGAAGACAGTTTGAC...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CCA 90 bp TTGTCCTCATCTGTTAGCTTTATGACTTTCTTCATCTTCAAGTATCAAGGTGGTAGCTCTGCCATATTTTaGTTCCTTCCCTTCAATATT +
Preference number: 4 (lower is better)
Translates to: LSSSVSFMTFFIFKYQGGSSAIF*FLPFNI
Trigger: AATATTGAAGGGAAGGAACCAAAATATGGCAGAGCT...ACCACCTTGATACTTGAAGATGAAGAAAGTCATAAAGCTAACAGATGAGGACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTAAGCTCTGCCATATTTTaGTTCCTTCCCTTCAATATT +
Preference number: 4 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLSSAIF*FLPFNI
Trigger: AATATTGAAGGGAAGGAACCAAAATATGGCAGAGCT...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS-3UTR CCA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGAAGATAGCTGTCATCTaGACTCCATGCTATATAAGA +
Preference number: 4 (lower is better)
Translates to: WRNERKFFPVQCILFRLMKIAVI*TPCYIR
Trigger: TCTTATATAGCATGGAGTCCAGATGACAGCTATCTT...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATGCAGGCAGGAGCCCGTaGGCGTGGGCCAGGTCCCCC +
Preference number: 5 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHAGRSP*AWARSP
Trigger: GGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTGC...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TGGGAAGACCCCTCAGTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATCTCAGGCTGTTGCTATaGTTGCCAGCGGCGGAGGGG +
Preference number: 5 (lower is better)
Translates to: WEDPSVQASLFSQDPEGHLRLLL*LPAAEG
Trigger: CCCCTCCGCCGCTGGCAACAATAGCAACAGCCTGAG...ATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTACTGAGGGGTCTTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CGTGTGCCCTGTGAGCTCCGCAATTGGCAGTTCACTACGTTTGTGCCAGATGTAAGGCTGTTGCTATTGTaGCCAGCGGCGGAGGGGGCG +
Preference number: 5 (lower is better)
Translates to: RVPCELRNWQFTTFVPDVRLLLL*PAAEGA
Trigger: CGCCCCCTCCGCCGCTGGCAACAATAGCAACAGCCT...TACATCTGGCACAAACGTAGTGAACTGCCAATTGCGGAGCTCACAGGGCACACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CAA 90 bp GTCACACTGGTAGAACTGACCACGCTGACCTCCCGTCACAAAGCGTTTCCCATCCTCAGGCTGTTGCTATaGTTGCCAGCGGCGGAGGGG +
Preference number: 5 (lower is better)
Translates to: VTLVELTTLTSRHKAFPILRLLL*LPAAEG
Trigger: CCCCTCCGCCGCTGGCAACAATAGCAACAGCCTGAG...GATGGGAAACGCTTTGTGACGGGAGGTCAGCGTGGTCAGTTCTACCAGTGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS GCA 90 bp CCATTGAGGTGCTGTCCTATGAGCCTAATGACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTCTTGAGGCTGCTGCCCAGCTCGGGG +
Preference number: 5 (lower is better)
Translates to: PLRCCPMSLMTSSSD*ESRFFFLRLLPSSG
Trigger: CCCCGAGCTGGGCAGCAGCCTCAAGAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGTCATTAGGCTCATAGGACAGCACCTCAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCACCTCCTCCCGCCCCGTaGGCCTGCATGGTGCCGCCG +
Preference number: 5 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPPPPAP*ACMVPP
Trigger: CGGCGGCACCATGCAGGCCAACGGGGCGGGAGGAGG...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GTTAAACAGAAGTCGTCTGCTCCAAATTTGCCATCAACTATCCATGCTACTGCAGCAGGCAGGAGCCCGTaGGCGTGGGCCAGGTCCCCC +
Preference number: 5 (lower is better)
Translates to: VKQKSSAPNLPSTIHATAAGRSP*AWARSP
Trigger: GGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTGC...TGCAGTAGCATGGATAGTTGATGGCAAATTTGGAGCAGACGACTTCTGTTTAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CAA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACAGCAGGCAGGAGCCCGTaGGCGTGGGCCAGGTCCCCC +
Preference number: 5 (lower is better)
Translates to: TSARSHQNDSLKFRELGTAGRSP*AWARSP
Trigger: GGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTGC...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATCTGTGGGTTCCAGCTAACACAATTTACTGTGCGCGTGTGCCCTGTGAGCTCCTTGACACTCAGGCTGTaGCTATTGTTGCCAGCGGCG +
Preference number: 5 (lower is better)
Translates to: ICGFQLTQFTVRVCPVSSLTLRL*LLLPAA
Trigger: CGCCGCTGGCAACAATAGCAACAGCCTGAGTGTCAA...GGAGCTCACAGGGCACACGCGCACAGTAAATTGTGTTAGCTGGAACCCACAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CAA 90 bp CAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAGCCATTAAAATACGACTAGCAGGCAGGAGCCCGTaGGCGTGGGCCAGGTCCCCC +
Preference number: 5 (lower is better)
Translates to: QLSIMFVCTKSQAIKIRLAGRSP*AWARSP
Trigger: GGGGGACCTGGCCCACGCCAACGGGCTCCTGCCTGC...TAGTCGTATTTTAATGGCTTGGGATTTGGTGCAAACAAACATGATTGATAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGAAGTGCCTCCAGGACCTaGCCGTCCTCCAGGTATTCC +
Preference number: 5 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGSASRT*PSSRYS
Trigger: GGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACT...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAAAGTGCCTCCAGGACCTaGCCGTCCTCCAGGTATTCC +
Preference number: 5 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQSASRT*PSSRYS
Trigger: GGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACT...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGAGTGCCTCCAGGACCTaGCCGTCCTCCAGGTATTCC +
Preference number: 5 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRSASRT*PSSRYS
Trigger: GGAATACCTGGAGGACGGCAAGGTCCTGGAGGCACT...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAACGGGACGCTGTGCCCTaGCCTTCCCATTCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQRDAVP*PSHSAF
Trigger: AAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCG...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACTCAGGCTGTTGCTATaGTTGCCAGCGGCGGAGGGG +
Preference number: 5 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATLRLLL*LPAAEG
Trigger: CCCCTCCGCCGCTGGCAACAATAGCAACAGCCTGAG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCTTGACACTCAGGCTGTaGCTATTGTTGCCAGCGGCG +
Preference number: 5 (lower is better)
Translates to: IYCATGKARIHEPSCKDLLTLRL*LLLPAA
Trigger: CGCCGCTGGCAACAATAGCAACAGCCTGAGTGTCAA...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCCGGGAACCCCGTTATaGACACTCAGGCTGTTGCTA +
Preference number: 5 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDPGTPL*TLRLLL
Trigger: TAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCGG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTCGGGACGCTGTGCCCTaGCCTTCCCATTCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSRDAVP*PSHSAF
Trigger: AAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCG...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS GCA 90 bp CGGAATTTGGTAGCAGAAGGATGCTCTAAACGACATCCTGACTCTTaGATGAGGAGATCAACAGTCTGGTTGAGCCCTAGGCCATTGAGG +
Preference number: 5 (lower is better)
Translates to: RNLVAEGCSKRHPDS*MRRSTVWLSPRPLR
Trigger: CCTCAATGGCCTAGGGCTCAACCAGACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCGTTTAGAGCATCCTTCTGCTACCAAATTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACTTCTGCTAGATCACATCAAAACGATTCCCTCAAGTTCAGAGAACTTGGAACACTCAGGCTGTTGCTATaGTTGCCAGCGGCGGAGGGG +
Preference number: 5 (lower is better)
Translates to: TSARSHQNDSLKFRELGTLRLLL*LPAAEG
Trigger: CCCCTCCGCCGCTGGCAACAATAGCAACAGCCTGAG...TGTTCCAAGTTCTCTGAACTTGAGGGAATCGTTTTGATGTGATCTAGCAGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACTTCATTACACAGAAGAGCAACAAGAATGGTGTCCCACCAGACAAAAGGCAGGTTGAGCCCTAGGCCATaGAGGTGCTGTCCTATGAGC +
Preference number: 5 (lower is better)
Translates to: TSLHRRATRMVSHQTKGRLSPRP*RCCPMS
Trigger: GCTCATAGGACAGCACCTCAATGGCCTAGGGCTCAA...CCTGCCTTTTGTCTGGTGGGACACCATTCTTGTTGCTCTTCTGTGTAATGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCTTCCCATTCAGCTTTaGCCCGTAGGTCTTCGGCAT +
Preference number: 5 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDLPIQL*PVGLRH
Trigger: ATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCATTGACACTCAGGCTGTaGCTATTGTTGCCAGCGGCG +
Preference number: 5 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPLTLRL*LLLPAA
Trigger: CGCCGCTGGCAACAATAGCAACAGCCTGAGTGTCAA...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCATTGAGCCCTAGGCCATaGAGGTGCTGTCCTATGAGC +
Preference number: 5 (lower is better)
Translates to: HDEHVCPAINHVCLHQIPLSPRP*RCCPMS
Trigger: GCTCATAGGACAGCACCTCAATGGCCTAGGGCTCAA...TGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCGGGACGCTGTGCCCTaGCCTTCCCATTCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: SFCLLNRQKGDTKDWASARDAVP*PSHSAF
Trigger: AAAAGCTGAATGGGAAGGCAAGGGCACAGCGTCCCG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCCGGGAACCCCGTTATaGACACTCAGGCTGTTGCTA +
Preference number: 5 (lower is better)
Translates to: SFCLLNRQKGDTKDWASAPGTPL*TLRLLL
Trigger: TAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCGG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATCGTATCCGGATCAACTaGCCATATGATAACTGTGGT +
Preference number: 5 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNRIRIN*PYDNCG
Trigger: ACCACAGTTATCATATGGCAAGTTGATCCGGATACG...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCTTGACACTCAGGCTGTaGCTATTGTTGCCAGCGGCG +
Preference number: 5 (lower is better)
Translates to: THFMANIRNRCLQQIGTVLTLRL*LLLPAA
Trigger: CGCCGCTGGCAACAATAGCAACAGCCTGAGTGTCAA...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCCTTACTAAAACTCTGTCTTGCAAGTCCCATAAATGAACTCCCTGAGTTGCTATTGAGCCCTAGGCCATaGAGGTGCTGTCCTATGAGC +
Preference number: 5 (lower is better)
Translates to: SLLKLCLASPINELPELLLSPRP*RCCPMS
Trigger: GCTCATAGGACAGCACCTCAATGGCCTAGGGCTCAA...TAGCAACTCAGGGAGTTCATTTATGGGACTTGCAAGACAGAGTTTTAGTAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036329.12
CDS-3UTR CAA 90 bp CATCATGCACATGCCACGTGGTACACTGTAACCACATCTGTAAACAGCTGTGGATATTCCCAACAACGTTaGAGAGATTTCAAGTGCGCC +
Preference number: 5 (lower is better)
Translates to: HHAHATWYTVTTSVNSCGYSQQR*RDFKCA
Trigger: GGCGCACTTGAAATCTCTCAAACGTTGTTGGGAATA...TCCACAGCTGTTTACAGATGTGGTTACAGTGTACCACGTGGCATGTGCATGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATCATGGTGAATGCTATGGACTTGGCTTGGCCTCAAGGGCAAGTTGTACCAGATCGTATCCGGATCAACTaGCCATATGATAACTGTGGT +
Preference number: 5 (lower is better)
Translates to: IMVNAMDLAWPQGQVVPDRIRIN*PYDNCG
Trigger: ACCACAGTTATCATATGGCAAGTTGATCCGGATACG...ATCTGGTACAACTTGCCCTTGAGGCCAAGCCAAGTCCATAGCATTCACCATGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAACCGGGAACCCCGTTATaGACACTCAGGCTGTTGCTA +
Preference number: 5 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKPGTPL*TLRLLL
Trigger: TAGCAACAGCCTGAGTGTCAATAACGGGGTTCCCGG...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACTCACTTCATGGCAAATATACGAAACAGATGCTTACAGCAAATTGGCACAGTCCTTCCCATTCAGCTTTaGCCCGTAGGTCTTCGGCAT +
Preference number: 5 (lower is better)
Translates to: THFMANIRNRCLQQIGTVLPIQL*PVGLRH
Trigger: ATGCCGAAGACCTACGGGCAAAAGCTGAATGGGAAG...GACTGTGCCAATTTGCTGTAAGCATCTGTTTCGTATATTTGCCATGAAGTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GACGCGCTTCATCAACTGGTTACTAGGAAGCAAGGTGTAAATGTTTGGCCCCAACTCTGTAAGTATCTGTaGAGTGTAACAGGGAAACTG +
Preference number: 5 (lower is better)
Translates to: DALHQLVTRKQGVNVWPQLCKYL*SVTGKL
Trigger: CAGTTTCCCTGTTACACTCAACAGATACTTACAGAG...TTGGGGCCAAACATTTACACCTTGCTTCCTAGTAACCAGTTGATGAAGCGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS TCA 90 bp TCATTCAGGTCATTCTCTGCCTTATCCCAGTCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCAGAAGGATGCTCTAAACGACATCCT +
Preference number: 5 (lower is better)
Translates to: SFRSFSALSQSPSMT*FRNLVAEGCSKRHP
Trigger: AGGATGTCGTTTAGAGCATCCTTCTGCTACCAAATTCCGAAATCATGTCATGGAAGGAGACTGGGATAAGGCAGAGAATGACCTGAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TGGAGAAACGAAAGGAAATTCTTTCCTGTCCAATGTATACTCTTCAGACTAATGTTGAGCCCTAGGCCATaGAGGTGCTGTCCTATGAGC +
Preference number: 5 (lower is better)
Translates to: WRNERKFFPVQCILFRLMLSPRP*RCCPMS
Trigger: GCTCATAGGACAGCACCTCAATGGCCTAGGGCTCAA...CATTAGTCTGAAGAGTATACATTGGACAGGAAAGAATTTCCTTTCGTTTCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ACACTGTTTCTGACCATGCCATGTCTCACGTGGCACTCCAGAAGAGCATCAGTTAATGAACTCCCTGAGTaGCTACATTTAACAAAGCTA +
Preference number: 5 (lower is better)
Translates to: TLFLTMPCLTWHSRRASVNELPE*LHLTKL
Trigger: TAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT...AACTGATGCTCTTCTGGAGTGCCACGTGAGACATGGCATGGTCAGAAACAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp GTACAAGCCTCTCTCTTCTCTCAGGATCCCGAGGGGCATATGATCATGGTGAATAATGAACTCCCTGAGTaGCTACATTTAACAAAGCTA +
Preference number: 5 (lower is better)
Translates to: VQASLFSQDPEGHMIMVNNELPE*LHLTKL
Trigger: TAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT...ATTCACCATGATCATATGCCCCTCGGGATCCTGAGAGAAGAGAGAGGCTTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATATACTGCGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCGAGATTGGCTCATTTTaGTTCTTAATTCTCCCGTCT +
Preference number: 5 (lower is better)
Translates to: IYCATGKARIHEPSCKDLEIGSF*FLILPS
Trigger: AGACGGGAGAATTAAGAACAAAAATGAGCCAATCTC...GAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTTGCCCGTTGCGCAGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp CTTCATCTTCAAGTATCAAGGTGGTGGGGAAAACTTTCCAGACCTAGATTTGCCGAGCTCTGCCATATTTaGGTTCCTTCCCTTCAATAT +
Preference number: 5 (lower is better)
Translates to: LHLQVSRWWGKLSRPRFAELCHI*VPSLQY
Trigger: ATATTGAAGGGAAGGAACCAAAATATGGCAGAGCTC...GGCAAATCTAGGTCTGGAAAGTTTTCCCCACCACCTTGATACTTGAAGATGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159290.2
ENSMUST00000159673.8
CDS-3UTR CAA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACATATTCCCAACAACGTTaGAGAGATTTCAAGTGCGCC +
Preference number: 5 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATYSQQR*RDFKCA
Trigger: GGCGCACTTGAAATCTCTCAAACGTTGTTGGGAATA...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp AAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCACGCTAAATAAGGCGGAACTCTGTAAGTATCTGTaGAGTGTAACAGGGAAACTG +
Preference number: 5 (lower is better)
Translates to: KARIHEPSCKDLTLNKAELCKYL*SVTGKL
Trigger: CAGTTTCCCTGTTACACTCAACAGATACTTACAGAG...TTCCGCCTTATTTAGCGTGAGATCTTTGCAGCTTGGTTCATGGATTCTAGCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCATTCTGTTTATTGAATCGACAGAAAGGGGATACAAAGGACTGGGCAAGTGCTCGTATCCGGATCAACTaGCCATATGATAACTGTGGT +
Preference number: 5 (lower is better)
Translates to: SFCLLNRQKGDTKDWASARIRIN*PYDNCG
Trigger: ACCACAGTTATCATATGGCAAGTTGATCCGGATACG...AGCACTTGCCCAGTCCTTTGTATCCCCTTTCTGTCGATTCAATAAACAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TCCCCTAACTCCCATGCTAATTCTTTTGATCACCACCCACAAACCAACCTCAGTGAGATTGGCTCATTTTaGTTCTTAATTCTCCCGTCT +
Preference number: 5 (lower is better)
Translates to: SPNSHANSFDHHPQTNLSEIGSF*FLILPS
Trigger: AGACGGGAGAATTAAGAACAAAAATGAGCCAATCTC...ACTGAGGTTGGTTTGTGGGTGGTGATCAAAAGAATTAGCATGGGAGTTAGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TATGTGAAATCAGGTATGGTTTTGGAAATGGTGGGAATGCTTTGGCCAGCAACACTCTGTAAGTATCTGTaGAGTGTAACAGGGAAACTG +
Preference number: 5 (lower is better)
Translates to: YVKSGMVLEMVGMLWPATLCKYL*SVTGKL
Trigger: CAGTTTCCCTGTTACACTCAACAGATACTTACAGAG...TGTTGCTGGCCAAAGCATTCCCACCATTTCCAAAACCATACCTGATTTCACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp ATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAAAATGAACTCCCTGAGTaGCTACATTTAACAAAGCTA +
Preference number: 5 (lower is better)
Translates to: MTSMSVQLSIMFVCTKSQNELPE*LHLTKL
Trigger: TAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT...TTGGGATTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159673.8
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TGTTTTTACTACTTACCTGGGTTACCAGGACATTTAACTGGCCAGGAAGAGCAAAATGAACTCCCTGAGTaGCTACATTTAACAAAGCTA +
Preference number: 5 (lower is better)
Translates to: CFYYLPGLPGHLTGQEEQNELPE*LHLTKL
Trigger: TAGCTTTGTTAAATGTAGCAACTCAGGGAGTTCATT...TTGCTCTTCCTGGCCAGTTAAATGTCCTGGTAACCCAGGTAAGTAGTAAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS-3UTR CAA 90 bp TTTTTCATGACGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAAGAGCTCTGCCATATTTaGGTTCCTTCCCTTCAATAT +
Preference number: 5 (lower is better)
Translates to: FFMTSMSVQLSIMFVCTKELCHI*VPSLQY
Trigger: ATATTGAAGGGAAGGAACCAAAATATGGCAGAGCTC...TTTGGTGCAAACAAACATGATTGATAGCTGGACAGACATGCTCGTCATGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159673.8
CDS TCA 72 bp CTCCTCCCGCCCCGTTGGCCTGCATGGTGCCGCCGCTaGCCAGGCTGTGGCCGCTGCTCCGCTGCGGGGCGG +
Preference number: 6 (lower is better)
Translates to: LLPPRWPAWCRR*PGCGRCSAAGR
Trigger: CCGCCCCGCAGCGGAGCAGCGGCCACAGCCTGGTCAGCGGCGGCACCATGCAGGCCAACGGGGCGGGAGGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237749.2
CDS GCA 72 bp TGCTGTCCTATGAGCCTAATGACATCCTCATCGGACTaGGAGAGCCGCTTCTTCTTCTTGAGGCTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: CCPMSLMTSSSD*ESRFFFLRLLP
Trigger: GGGCAGCAGCCTCAAGAAGAAGAAGCGGCTCTCGCAGTCCGATGAGGATGTCATTAGGCTCATAGGACAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS GCA 72 bp AGATCAACAGTCTGGTTGAGCCCTAGGCCATTGAGGTaGTGTCCTATGAGCCTAATGACATCCTCATCGGAC +
Preference number: 6 (lower is better)
Translates to: RSTVWLSPRPLR*CPMSLMTSSSD
Trigger: GTCCGATGAGGATGTCATTAGGCTCATAGGACAGCACCTCAATGGCCTAGGGCTCAACCAGACTGTTGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS GCA 72 bp GTAGCAGAAGGATGCTCTAAACGACATCCTGACTCTTaGATGAGGAGATCAACAGTCTGGTTGAGCCCTAGG +
Preference number: 6 (lower is better)
Translates to: VAEGCSKRHPDS*MRRSTVWLSPR
Trigger: CCTAGGGCTCAACCAGACTGTTGATCTCCTCATGCAAGAGTCAGGATGTCGTTTAGAGCATCCTTCTGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS CAA 90 bp CTGCAGCAGCAGAAACTTCATCCTCACAATTATTCCCAACAACGTTaGAGAGATTTCAAGTGCGCCTCTTACCACAATAGCGTGAGGAGA +
Preference number: 6 (lower is better)
Translates to: LQQQKLHPHNYSQQR*RDFKCASYHNSVRR
Trigger: TCTCCTCACGCTATTGTGGTAAGAGGCGCACTTGAAATCTCTCAAACGTTGTTGGGAATAATTGTGAGGATGAAGTTTCTGCTGCTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS TCA 72 bp TCATTCTCTGCCTTATCCCAGTCTCCTTCCATGACATaGTTTCGGAATTTGGTAGCAGAAGGATGCTCTAAA +
Preference number: 6 (lower is better)
Translates to: SFSALSQSPSMT*FRNLVAEGCSK
Trigger: TTTAGAGCATCCTTCTGCTACCAAATTCCGAAATCATGTCATGGAAGGAGACTGGGATAAGGCAGAGAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036329.12
ENSMUST00000162819.9
ENSMUST00000162963.8
ENSMUST00000237749.2
CDS TCA 72 bp AGAAACTTCATCCTCACAATTATTCCCAACAACGTTTaGGAGATTTCAAGTGCGCCTCTTACCACAATAGCG +
Preference number: 6 (lower is better)
Translates to: RNFILTIIPNNV*EISSAPLTTIA
Trigger: CGCTATTGTGGTAAGAGGCGCACTTGAAATCTCTCAAACGTTGTTGGGAATAATTGTGAGGATGAAGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2
CDS CAA 72 bp CAGAAACTTCATCCTCACAATTATTCCCAACAACGTTaGAGAGATTTCAAGTGCGCCTCTTACCACAATAGC +
Preference number: 6 (lower is better)
Translates to: QKLHPHNYSQQR*RDFKCASYHNS
Trigger: GCTATTGTGGTAAGAGGCGCACTTGAAATCTCTCAAACGTTGTTGGGAATAATTGTGAGGATGAAGTTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162819.9
ENSMUST00000237749.2