RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDR20RT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035560

Ensembl transcript IDs: ENSMUST00000046331.5, ENSMUST00000221658.2, ENSMUST00000221980.2, ENSMUST00000222822.2

Found 214 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTTCAAGACCGTTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCTaGGTCAGAATGTGGGGGAGTCCTCATGTTGTGTGTCTTTCACAA +
Preference number: 1 (lower is better)
Translates to: ASRPFLVSDLGCRLF*VRMWGSPHVVCLSQ
Trigger: TTGTGAAAGACACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAATCACTCACGAGAAACGGTCTTGAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 90 bp CACAACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTTaGGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCA +
Preference number: 1 (lower is better)
Translates to: HNLSYYQRMSRSRKS*EEKPVHLETLLWRA
Trigger: TGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 90 bp TTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTTaGGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCA +
Preference number: 1 (lower is better)
Translates to: LYLSYYQRMSRSRKS*EEKPVHLETLLWRA
Trigger: TGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
3UTR TCA 90 bp AGTCAGAATGTGGGGGAGTCCTCATGTTGTGTGTCTTTCACAACCTaGGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTTGAGAAG +
Preference number: 1 (lower is better)
Translates to: SQNVGESSCCVSFTT*VIIKGCQGAESLEK
Trigger: CTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTTGTGAAAGACACACAACATGAGGACTCCCCCACATTCTGACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR GCA 90 bp AGGTATGCTAATCATAAAACAGATAGCAACATTCCTCTACTCACCTaGTTCCTGGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTTG +
Preference number: 1 (lower is better)
Translates to: RYANHKTDSNIPLLT*FLGSGSVHSKKVTL
Trigger: CAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCCAGGAAGCAGGTGAGTAGAGGAATGTTGCTATCTGTTTTATGATTAGCATACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp ATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATGCCTGCATGGTGTCAAGACCGTTTCTCGTaGGTGATTTGGGGTGTCGCC +
Preference number: 2 (lower is better)
Translates to: IPPVPATQGPWSSMPAWCQDRFS*VIWGVA
Trigger: GGCGACACCCCAAATCACTCACGAGAAACGGTCTTG...ACACCATGCAGGCATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp GAGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCCATGCAAAGGGTGTCGCCTCTTCTaGGTCAGAATGTGGGGGAGT +
Preference number: 2 (lower is better)
Translates to: ECSFKESHLDHSWNPPCKGCRLF*VRMWGS
Trigger: ACTCCCCCACATTCTGACTCAGAAGAGGCGACACCC...TTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp GTTGTGGTTTCTTCCTTTAAATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTAGGAGCAGAAAGTCTTaGGAAGAGAAGCCAGTGCAC +
Preference number: 2 (lower is better)
Translates to: VVVSSFKYPLSQLLRAHGRSRKS*EEKPVH
Trigger: GTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCT...ACCATGGGCCCTGAGTAGCTGGGACAGGGGGTATTTAAAGGAAGAAACCACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR CAA 90 bp ACCTGCTTCCTGGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTaGACCACTCCTGGAACCCGCCATGCAAATGTGCTATTGTTAGAG +
Preference number: 2 (lower is better)
Translates to: TCFLGSGSVHSKKVT*TTPGTRHANVLLLE
Trigger: CTCTAACAATAGCACATTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCCAGGAAGCAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGGAGCAGAAAGTCTTaGGAAGAGAAGCCAGTGCAC +
Preference number: 2 (lower is better)
Translates to: PFVHTREMLGSKNSILYLRSRKS*EEKPVH
Trigger: GTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCT...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
3UTR CAA 90 bp AAAGTCACCTTGACCACTCCTGGAACCCGCCATGCAAATGTGCTATaGTTAGAGACTCATAGAAACTGTCTTGACTCAGACTCCCTTGTG +
Preference number: 2 (lower is better)
Translates to: KVTLTTPGTRHANVL*LETHRNCLDSDSLV
Trigger: CACAAGGGAGTCTGAGTCAAGACAGTTTCTATGAGTCTCTAACAATAGCACATTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp AAAACTCCTTTATTCTACAGTTGGTACTGGCTGAGCAGGAAGACAAGAGGCACTAGGAGCAGAAAGTCTTaGGAAGAGAAGCCAGTGCAC +
Preference number: 2 (lower is better)
Translates to: KTPLFYSWYWLSRKTRGTRSRKS*EEKPVH
Trigger: GTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCT...AGTGCCTCTTGTCTTCCTGCTCAGCCAGTACCAACTGTAGAATAAAGGAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
3UTR CAA 90 bp CTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTaGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGC +
Preference number: 2 (lower is better)
Translates to: LVPELLSKDVKEQKV*RREASAPRNTSVES
Trigger: GCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
3UTR CAA 90 bp TCACAACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTaGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGC +
Preference number: 2 (lower is better)
Translates to: SQPELLSKDVKEQKV*RREASAPRNTSVES
Trigger: GCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR CCA 90 bp ACCCGCCATGCAAATGTGCTATTGTTAGAGACTCATAGAAACTGTCTTGACTCACTAGAAACACTTCTGTaGAGAGCAAAGTCCTCCTGT +
Preference number: 2 (lower is better)
Translates to: TRHANVLLLETHRNCLDSLETLL*RAKSSC
Trigger: ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAG...TGAGTCAAGACAGTTTCTATGAGTCTCTAACAATAGCACATTTGCATGGCGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR TCA 90 bp GAATGTGACCTTTGTGACTCAATTCCCCAAGGTATGCTAATCATAAAACAGATAGTGTCTTTCACAACCTaGGTTATTATCAAAGGATGT +
Preference number: 2 (lower is better)
Translates to: ECDLCDSIPQGMLIIKQIVSFTT*VIIKGC
Trigger: ACATCCTTTGATAATAACTCAGGTTGTGAAAGACAC...TATCTGTTTTATGATTAGCATACCTTGGGGAATTGAGTCACAAAGGTCACATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR GCA 72 bp CCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATaGCTGCATGGTGTACGACTGTGGGTCCCAGAGCAC +
Preference number: 3 (lower is better)
Translates to: PLSQLLRAHGPL*LHGVRLWVPEH
Trigger: GTGCTCTGGGACCCACAGTCGTACACCATGCAGGCATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 72 bp CCGTTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCTaGGTCAGAATGTGGGGGAGTCCTCATGTTGTGTGT +
Preference number: 3 (lower is better)
Translates to: PFLVSDLGCRLF*VRMWGSPHVVC
Trigger: ACACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAATCACTCACGAGAAACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR-3UTR CAA 90 bp AGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCCATGCAAATGCCCTCCCCACCCCCTaGAGTTGTGGTTTCTTCCTT +
Preference number: 3 (lower is better)
Translates to: SVHSKKVTLTTPGTRHANALPTP*SCGFFL
Trigger: AAGGAAGAAACCACAACTCAAGGGGGTGGGGAGGGC...ATTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 72 bp AAGTCCTCTTGCGGTTTGCTTCAAGACCGTTTCTCGTaGGTGATTTGGGGTGTCGCCTCTTCTGAGTCAGAA +
Preference number: 3 (lower is better)
Translates to: KSSCGLLQDRFS*VIWGVASSESE
Trigger: TTCTGACTCAGAAGAGGCGACACCCCAAATCACTCACGAGAAACGGTCTTGAAGCAAACCGCAAGAGGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 72 bp TGGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTTaGCCACTCCTGGAACCCGCCATGCAAATGTGCTAT +
Preference number: 3 (lower is better)
Translates to: WVLGVFIQRKSP*PLLEPAMQMCY
Trigger: ATAGCACATTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 72 bp GTGGGGGAGTCCTCATGTTGTGTGTCTTTCACAACCTaGGTTATTATCAAAGGATGTCAAGGAGCAGAAAGT +
Preference number: 3 (lower is better)
Translates to: VGESSCCVSFTT*VIIKGCQGAES
Trigger: ACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTTGTGAAAGACACACAACATGAGGACTCCCCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR TCA 72 bp AGACTCATAGAAACTGTCTTGACTCAGACTCCCTTGTaGCTCTTAACTGGTATTTTTGGTATTTTCCAACAA +
Preference number: 3 (lower is better)
Translates to: RLIETVLTQTPL*LLTGIFGIFQQ
Trigger: TTGTTGGAAAATACCAAAAATACCAGTTAAGAGTCACAAGGGAGTCTGAGTCAAGACAGTTTCTATGAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp GACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAGCAACCGTGCAGCTCCGCTaGGTCAAAGTTGAACACGCG +
Preference number: 4 (lower is better)
Translates to: DGHPGSQLISSSSRSGAATVQLR*VKVEHA
Trigger: CGCGTGTTCAACTTTGACTCAGCGGAGCTGCACGGT...TGCTGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGGCTCCCGGCCCACACTaGAGCACAGGCGGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: PFVHTREMLGSKNSILYLAPGPH*STGGCH
Trigger: ATGGCAACCGCCTGTGCTTCAGTGTGGGCCGGGAGC...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp CCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTACCGTGCAGCTCCGCTaGGTCAAAGTTGAACACGCG +
Preference number: 4 (lower is better)
Translates to: PVHLETLLWRAKSSCCDGTVQLR*VKVEHA
Trigger: CGCGTGTTCAACTTTGACTCAGCGGAGCTGCACGGT...ACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp TGTGACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCACCGCTGAGTCAAAGTTaGACACGCGCAGAAACCCGT +
Preference number: 4 (lower is better)
Translates to: CDGHPGSQLISSSSRSGAPLSQS*TRAETR
Trigger: ACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGG...TGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp GGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCCGCTGAGTCAAAGTTaGACACGCGCAGAAACCCGT +
Preference number: 4 (lower is better)
Translates to: GFWECSFKESHLDHSWNPPLSQS*TRAETR
Trigger: ACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGG...CGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp GGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCTGGATCCCTGTGAGTTaGAGGGCACCCGGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: GSKNSILYLSYYQRMSRSWIPVS*RAPGWA
Trigger: GGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCA...GCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp ACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATGCTCCCGGCCCACACTaGAGCACAGGCGGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: TEESICTYKGDVGLQEQHAPGPH*STGGCH
Trigger: ATGGCAACCGCCTGTGCTTCAGTGTGGGCCGGGAGC...ATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp ATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATGCCTGCATGGTGTTGTCACTGCTCTTGCTaGAAATGTGTCCCATACTAT +
Preference number: 4 (lower is better)
Translates to: IPPVPATQGPWSSMPAWCCHCSC*KCVPYY
Trigger: ATAGTATGGGACACATTTCCAGCAAGAGCAGTGACA...ACACCATGCAGGCATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGATGTGCCCTTGCTCTTaGGAGGGGCTGGTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: PFVHTREMLGSKNSILYLMCPCS*EGLVRE
Trigger: TTCCCTCACCAGCCCCTCTCAAGAGCAAGGGCACAT...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR GCA 90 bp CTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTTTGCTCTTGCAATTGTaGACGGCAAAGCTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: LETLLWRAKSSCCDGHPGLLLQL*TAKLSP
Trigger: GGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAA...ACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp GACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAGCACACACGCTAAGAACTTaGCATCTGGGGAGAAAGCAA +
Preference number: 4 (lower is better)
Translates to: DGHPGSQLISSSSRSGAAHTLRT*HLGRKQ
Trigger: TTGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTG...TGCTGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACCTGACCCAGGATTTGTaGCCACGGCCTCTAGCTATT +
Preference number: 4 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDLTQDL*PRPLAI
Trigger: AATAGCTAGAGGCCGTGGGCACAAATCCTGGGTCAG...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp ACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTTCACAGTCTCGGGTGGTGAAATaGGTCTTAATCTCGTTCGTC +
Preference number: 4 (lower is better)
Translates to: TLLWRAKSSCCDGHPGSQSRVVK*VLISFV
Trigger: GACGAACGAGATTAAGACCCATTTCACCACCCGAGA...CTGTGAACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR TCA 90 bp TCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGATGGATCCCTGTGAGTTaGAGGGCACCCGGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: SKNSILYLSYYQRMSRSRWIPVS*RAPGWA
Trigger: GGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCA...TCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACTGGCCGTTAGGTGGTTaGAATCATGACAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDWPLGG*NHDKWA
Trigger: AGCCCACTTGTCATGATTTCAACCACCTAACGGCCA...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp CACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTCGATCTCTGCCAAAATaGAGAAGGTCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: HLETLLWRAKSSCCDGHPRSLPK*RRSWKF
Trigger: GAACTTCCAGGACCTTCTTCATTTTGGCAGAGATCG...AGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp TGTGACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCACGATCTCTGCCAAAATaGAGAAGGTCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: CDGHPGSQLISSSSRSGARSLPK*RRSWKF
Trigger: GAACTTCCAGGACCTTCTTCATTTTGGCAGAGATCG...TGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp GGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCCGACTGTACTCCGAGTaGGGCAGCAGCCTGTACAGA +
Preference number: 4 (lower is better)
Translates to: GSKNSILYLSYYQRMSRSRLYSE*GSSLYR
Trigger: TCTGTACAGGCTGCTGCCGCACTCGGAGTACAGTCG...GCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGTCAGGTCGGCAGCCTTaGGGACCCCCTTGTAGATAT +
Preference number: 4 (lower is better)
Translates to: PFVHTREMLGSKNSILYLSGRQP*GPPCRY
Trigger: ATATCTACAAGGGGGTCCGCAAGGCTGCCGACCTGA...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp GTTGTGGTTTCTTCCTTTAAATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCACACGCTAAGAACTTaGCATCTGGGGAGAAAGCAA +
Preference number: 4 (lower is better)
Translates to: VVVSSFKYPLSQLLRAHGHTLRT*HLGRKQ
Trigger: TTGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTG...ACCATGGGCCCTGAGTAGCTGGGACAGGGGGTATTTAAAGGAAGAAACCACAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTCTTTTCATTGTACCGTaGAGCTCCGCTGAGTCAAAG +
Preference number: 4 (lower is better)
Translates to: LETLLWRAKSSCCDGHPGLFIVP*SSAESK
Trigger: CTTTGACTCAGCGGAGCTGCACGGTACAATGAAAAG...ACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CAGAAAGTCTTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCCTGACCCAGGATTTGTaGCCACGGCCTCTAGCTATT +
Preference number: 4 (lower is better)
Translates to: QKVLRREASAPRNTSVESLTQDL*PRPLAI
Trigger: AATAGCTAGAGGCCGTGGGCACAAATCCTGGGTCAG...GCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp ACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTTCACAGATGTTCCCACTTGAATaGGCTACTAGGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: TLLWRAKSSCCDGHPGSQMFPLE*ATRKRL
Trigger: CAGCCTTTTCCTAGTAGCCCATTCAAGTGGGAACAT...CTGTGAACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp TTTCTTCCTTTAAATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATTTACGGTCTTTCTCGTaGTGTCTCTCCTTCCGGTCA +
Preference number: 4 (lower is better)
Translates to: FLPLNTPCPSYSGPMVLYLRSFS*CLSFRS
Trigger: TGACCGGAAGGAGAGACACCACGAGAAAGACCGTAA...ATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTATTTAAAGGAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp CTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGACCGTGCAGCTCCGCTaGGTCAAAGTTGAACACGCG +
Preference number: 4 (lower is better)
Translates to: LQEQHLVPELLSKDVKEQTVQLR*VKVEHA
Trigger: CGCGTGTTCAACTTTGACTCAGCGGAGCTGCACGGT...CTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp CAGAAAGTCTTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCCAAATGCTACAACACTaGCCCAGGATTTGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: QKVLRREASAPRNTSVESQMLQH*PRICAH
Trigger: GTGGGCACAAATCCTGGGTCAGTGTTGTAGCATTTG...GCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp GAGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCCATGCAAACAAATGCTACAACACTaGCCCAGGATTTGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: ECSFKESHLDHSWNPPCKQMLQH*PRICAH
Trigger: GTGGGCACAAATCCTGGGTCAGTGTTGTAGCATTTG...TTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp ACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCGACTGTACTCCGAGTaGGGCAGCAGCCTGTACAGA +
Preference number: 4 (lower is better)
Translates to: TEESICTYKGDVGLQEQHRLYSE*GSSLYR
Trigger: TCTGTACAGGCTGCTGCCGCACTCGGAGTACAGTCG...ATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp ATTTGGGGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTTTGTGGATTTGCTCTTaGAATTGTGCACGGCAAAGC +
Preference number: 4 (lower is better)
Translates to: IWGVASSESECGGVLMLCLWICS*NCARQS
Trigger: GCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAA...ACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTCACAATGTACTTaGCATCTGGGCTCCAGCACA +
Preference number: 4 (lower is better)
Translates to: LRREASAPRNTSVESKVLLSQCT*HLGSST
Trigger: TGTGCTGGAGCCCAGATGGCAAGTACATTGTGACAG...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTTGTTCGCTCGATCTCTaGCAAAATGAAGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PVHLETLLWRAKSSCCDGCSLDL*QNEEGP
Trigger: AGGACCTTCTTCATTTTGGCAGAGATCGAGCGAACA...ACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTTGTTCGCTCGATCTCTaGCAAAATGAAGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: HLETLLWRAKSSCCDGHPCSLDL*QNEEGP
Trigger: AGGACCTTCTTCATTTTGGCAGAGATCGAGCGAACA...AGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp GGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTGTCTTTGGTTCAGTTTGTCACTaGTCTTGCTGGAAATGTGTC +
Preference number: 4 (lower is better)
Translates to: GVASSESECGGVLMLCVFGSVCH*SCWKCV
Trigger: GACACATTTCCAGCAAGAGCAGTGACAAACTGAACC...AAAGACACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp GACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAGCAAACTTTACCAGGCCTTaGCCATGTGCAAATAAATCC +
Preference number: 4 (lower is better)
Translates to: DGHPGSQLISSSSRSGAANFTRP*PCANKS
Trigger: GGATTTATTTGCACATGGGCAAGGCCTGGTAAAGTT...TGCTGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp TGTGACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAATGTTCCCACTTGAATaGGCTACTAGGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: CDGHPGSQLISSSSRSGAMFPLE*ATRKRL
Trigger: CAGCCTTTTCCTAGTAGCCCATTCAAGTGGGAACAT...TGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACAATGTACTTGCCATCTaGGCTCCAGCACAGACAAAG +
Preference number: 4 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDNVLAI*APAQTK
Trigger: CTTTGTCTGTGCTGGAGCCCAGATGGCAAGTACATT...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp AGCAGGAAGACAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTAGGATTGGATCCCTGTaGGTTGAAGGGCACCCGGTT +
Preference number: 4 (lower is better)
Translates to: SRKTRGTEESICTYKGDVRIGSL*VEGHPV
Trigger: AACCGGGTGCCCTTCAACTCACAGGGATCCAATCCT...AACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTGTCTTCCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp CATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATAGGATTGGATCCCTGTaGGTTGAAGGGCACCCGGTT +
Preference number: 4 (lower is better)
Translates to: HTREMLGSKNSILYLSYYRIGSL*VEGHPV
Trigger: AACCGGGTGCCCTTCAACTCACAGGGATCCAATCCT...ATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp AAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGTCAGGTCGGCAGCCTTaGGGACCCCCTTGTAGATAT +
Preference number: 4 (lower is better)
Translates to: KGDVGLQEQHLVPELLSKSGRQP*GPPCRY
Trigger: ATATCTACAAGGGGGTCCGCAAGGCTGCCGACCTGA...CTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp GAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTTGTGGATTTGCTCTTaGAATTGTGCACGGCAAAGC +
Preference number: 4 (lower is better)
Translates to: EEKPVHLETLLWRAKSSCLWICS*NCARQS
Trigger: GCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAA...ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp TTCTACAGTTGGTACTGGCTGAGCAGGAAGACAAGAGGCACTGAAGAATCCATTCTGTCACAATGTACTTaGCATCTGGGCTCCAGCACA +
Preference number: 4 (lower is better)
Translates to: FYSWYWLSRKTRGTEESILSQCT*HLGSST
Trigger: TGTGCTGGAGCCCAGATGGCAAGTACATTGTGACAG...AATGGATTCTTCAGTGCCTCTTGTCTTCCTGCTCAGCCAGTACCAACTGTAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp GTTGTGGTTTCTTCCTTTAAATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTAGTATAGGGATCAAATaGTACAACACTGACCCAGGA +
Preference number: 4 (lower is better)
Translates to: VVVSSFKYPLSQLLRAHGSIGIK*YNTDPG
Trigger: TCCTGGGTCAGTGTTGTAGCATTTGATCCCTATACT...ACCATGGGCCCTGAGTAGCTGGGACAGGGGGTATTTAAAGGAAGAAACCACAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTAACTTTACCAGGCCTTaGCCATGTGCAAATAAATCC +
Preference number: 4 (lower is better)
Translates to: HLETLLWRAKSSCCDGHPNFTRP*PCANKS
Trigger: GGATTTATTTGCACATGGGCAAGGCCTGGTAAAGTT...AGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp AAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCAGTCTGGTCGTTaGGGTTTACGAAGGAGACGC +
Preference number: 4 (lower is better)
Translates to: KNPFVHTREMLGSKNSILYQSGR*GLRRRR
Trigger: GCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTA...CAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp TCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTTGGCCGTTAGGTGGTTaGAATCATGACAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: SICTYKGDVGLQEQHLVPWPLGG*NHDKWA
Trigger: AGCCCACTTGTCATGATTTCAACCACCTAACGGCCA...AGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp ATTTGGGGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTATGTGTCCCATACTATaGTTTCGTTTACGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: IWGVASSESECGGVLMLCMCPIL*FRLRSF
Trigger: GAAAGACCGTAAACGAAATCATAGTATGGGACACAT...ACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCCTGTCACAATGTACTTaGCATCTGGGCTCCAGCACA +
Preference number: 4 (lower is better)
Translates to: LKNPFVHTREMLGSKNSILSQCT*HLGSST
Trigger: TGTGCTGGAGCCCAGATGGCAAGTACATTGTGACAG...GATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp CAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAATGTACTTGCCATCTaGGCTCCAGCACAGACAAAG +
Preference number: 4 (lower is better)
Translates to: QEALKNPFVHTREMLGSKNVLAI*APAQTK
Trigger: CTTTGTCTGTGCTGGAGCCCAGATGGCAAGTACATT...CTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp CTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTTGAGAAGACCGCTGAGTCAAAGTTaGACACGCGCAGAAACCCGT +
Preference number: 4 (lower is better)
Translates to: LVPELLSKDVKEQKVLRRPLSQS*TRAETR
Trigger: ACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGG...TCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp AGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTCAAATGCTACAACACTaGCCCAGGATTTGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: RIHLYIQGRCWAPRTASCQMLQH*PRICAH
Trigger: GTGGGCACAAATCCTGGGTCAGTGTTGTAGCATTTG...ACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR TCA 90 bp GAATGTGACCTTTGTGACTCAATTCCCCAAGGTATGCTAATCATAAAACAGATAATGTGCCCTTGCTCTTaGGAGGGGCTGGTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: ECDLCDSIPQGMLIIKQIMCPCS*EGLVRE
Trigger: TTCCCTCACCAGCCCCTCTCAAGAGCAAGGGCACAT...TATCTGTTTTATGATTAGCATACCTTGGGGAATTGAGTCACAAAGGTCACATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp GAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTATGTGTCCCATACTATaGTTTCGTTTACGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: EEKPVHLETLLWRAKSSCMCPIL*FRLRSF
Trigger: GAAAGACCGTAAACGAAATCATAGTATGGGACACAT...ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR GCA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGTTGTGGATTTGCTCTTaGAATTGTGCACGGCAAAGC +
Preference number: 4 (lower is better)
Translates to: PFVHTREMLGSKNSILYLLWICS*NCARQS
Trigger: GCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAA...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp ATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCCACACGCTAAGAACTTaGCATCTGGGGAGAAAGCAA +
Preference number: 4 (lower is better)
Translates to: IHLYIQGRCWAPRTASCTHTLRT*HLGRKQ
Trigger: TTGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTG...GGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp ATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCCTTTTCATTGTACCGTaGAGCTCCGCTGAGTCAAAG +
Preference number: 4 (lower is better)
Translates to: IHLYIQGRCWAPRTASCTLFIVP*SSAESK
Trigger: CTTTGACTCAGCGGAGCTGCACGGTACAATGAAAAG...GGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCAGTATAGGGATCAAATaGTACAACACTGACCCAGGA +
Preference number: 4 (lower is better)
Translates to: LRREASAPRNTSVESKVLSIGIK*YNTDPG
Trigger: TCCTGGGTCAGTGTTGTAGCATTTGATCCCTATACT...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CCA 90 bp CTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTCTCGGGTGGTGAAATaGGTCTTAATCTCGTTCGTC +
Preference number: 4 (lower is better)
Translates to: LKNPFVHTREMLGSKNSISRVVK*VLISFV
Trigger: GACGAACGAGATTAAGACCCATTTCACCACCCGAGA...GATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp CAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGTTGCCATTACCAGTCTaGTCGTTGAGGTTTACGAAG +
Preference number: 4 (lower is better)
Translates to: QEALKNPFVHTREMLGSKLPLPV*SLRFTK
Trigger: CTTCGTAAACCTCAACGACCAGACTGGTAATGGCAA...CTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp AGCAGGAAGACAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTTTACGGTCTTTCTCGTaGTGTCTCTCCTTCCGGTCA +
Preference number: 4 (lower is better)
Translates to: SRKTRGTEESICTYKGDVLRSFS*CLSFRS
Trigger: TGACCGGAAGGAGAGACACCACGAGAAAGACCGTAA...AACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTGTCTTCCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
3UTR CAA 72 bp GCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTaGTGTGTCTTTCACAACCTGAGTTATTATCAAAGG +
Preference number: 4 (lower is better)
Translates to: ASSESECGGVLM*CVFHNLSYYQR
Trigger: CCTTTGATAATAACTCAGGTTGTGAAAGACACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
3UTR CAA 72 bp TTGACCACTCCTGGAACCCGCCATGCAAATGTGCTATaGTTAGAGACTCATAGAAACTGTCTTGACTCAGAC +
Preference number: 4 (lower is better)
Translates to: LTTPGTRHANVL*LETHRNCLDSD
Trigger: GTCTGAGTCAAGACAGTTTCTATGAGTCTCTAACAATAGCACATTTGCATGGCGGGTTCCAGGAGTGGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR TCA 90 bp AAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGCGATCTCTGCCAAAATaGAGAAGGTCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: KGDVGLQEQHLVPELLSKRSLPK*RRSWKF
Trigger: GAACTTCCAGGACCTTCTTCATTTTGGCAGAGATCG...CTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp TCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGACTTTTCATTGTACCGTaGAGCTCCGCTGAGTCAAAG +
Preference number: 4 (lower is better)
Translates to: SKNSILYLSYYQRMSRSRLFIVP*SSAESK
Trigger: CTTTGACTCAGCGGAGCTGCACGGTACAATGAAAAG...TCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp CATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATTGTTCGCTCGATCTCTaGCAAAATGAAGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: HTREMLGSKNSILYLSYYCSLDL*QNEEGP
Trigger: AGGACCTTCTTCATTTTGGCAGAGATCGAGCGAACA...ATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR GCA 90 bp AGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTGGTTCAGTTTGTCACTaGTCTTGCTGGAAATGTGTC +
Preference number: 4 (lower is better)
Translates to: RIHLYIQGRCWAPRTASCGSVCH*SCWKCV
Trigger: GACACATTTCCAGCAAGAGCAGTGACAAACTGAACC...ACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CCA 90 bp CATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATTTGCCATTACCAGTCTaGTCGTTGAGGTTTACGAAG +
Preference number: 4 (lower is better)
Translates to: HTREMLGSKNSILYLSYYLPLPV*SLRFTK
Trigger: CTTCGTAAACCTCAACGACCAGACTGGTAATGGCAA...ATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp GAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACTATCCTTTTATCTATTaGTTTACTCAGGTCGGCAGC +
Preference number: 4 (lower is better)
Translates to: EALKNPFVHTREMLGSKNYPFIY*FTQVGS
Trigger: GCTGCCGACCTGAGTAAACCAATAGATAAAAGGATA...GTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp CTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGATGTTCCCACTTGAATaGGCTACTAGGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: LQEQHLVPELLSKDVKEQMFPLE*ATRKRL
Trigger: CAGCCTTTTCCTAGTAGCCCATTCAAGTGGGAACAT...CTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp CTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTGTCACTGCTCTTGCTaGAAATGTGTCCCATACTAT +
Preference number: 4 (lower is better)
Translates to: LKNPFVHTREMLGSKNSICHCSC*KCVPYY
Trigger: ATAGTATGGGACACATTTCCAGCAAGAGCAGTGACA...GATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR GCA 90 bp AAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGAGTATAGGGATCAAATaGTACAACACTGACCCAGGA +
Preference number: 4 (lower is better)
Translates to: KGDVGLQEQHLVPELLSKSIGIK*YNTDPG
Trigger: TCCTGGGTCAGTGTTGTAGCATTTGATCCCTATACT...CTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CCA 90 bp CTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAAGTCTTGAGAAGAAATGTACTTGCCATCTaGGCTCCAGCACAGACAAAG +
Preference number: 4 (lower is better)
Translates to: LVPELLSKDVKEQKVLRRNVLAI*APAQTK
Trigger: CTTTGTCTGTGCTGGAGCCCAGATGGCAAGTACATT...TCTTCTCAAGACTTTCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS GCA 90 bp CCCTGTGAGTTGAAGGGCACCCGGTTGGGCCGACTGTACTCCGAGTaGGGCAGCAGCCTGTACAGACCTTCTCGGGTGGTGAAATGGGTC +
Preference number: 5 (lower is better)
Translates to: PCELKGTRLGRLYSE*GSSLYRPSRVVKWV
Trigger: GACCCATTTCACCACCCGAGAAGGTCTGTACAGGCTGCTGCCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 90 bp GTCGTTGAGGTTTACGAAGGAGACGCGGACAGGATTGGATCCCTGTaGGTTGAAGGGCACCCGGTTGGGCCGACTGTACTCCGAGTGCGG +
Preference number: 5 (lower is better)
Translates to: VVEVYEGDADRIGSL*VEGHPVGPTVLRVR
Trigger: CCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 90 bp GGCCCCGTCCATGACGCTGCCTTTGCTAGCAGCATTGGAGACTGCTaGATGTGGAAGGCTATTGGACCGTGGCAATGGAGGGGGCACAGA +
Preference number: 5 (lower is better)
Translates to: GPVHDAAFASSIGDC*MWKAIGPWQWRGHR
Trigger: TCTGTGCCCCCTCCATTGCCACGGTCCAATAGCCTTCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGGCAGCGTCATGGACGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CCA 90 bp AGCTCCCGGCCCACACTGAAGCACAGGCGGTTGCCATTACCAGTCTaGTCGTTGAGGTTTACGAAGGAGACGCGGACAGGATTGGATCCC +
Preference number: 5 (lower is better)
Translates to: SSRPTLKHRRLPLPV*SLRFTKETRTGLDP
Trigger: GGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAATGGCAACCGCCTGTGCTTCAGTGTGGGCCGGGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CCA 90 bp TCCGAGTGCGGCAGCAGCCTGTACAGACCTTCTCGGGTGGTGAAATaGGTCTTAATCTCGTTCGTCTCCTTTCCTCTTCCCTCCGTCGCC +
Preference number: 5 (lower is better)
Translates to: SECGSSLYRPSRVVK*VLISFVSFPLPSVA
Trigger: GGCGACGGAGGGAAGAGGAAAGGAGACGAACGAGATTAAGACCCATTTCACCACCCGAGAAGGTCTGTACAGGCTGCTGCCGCACTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATGCCTGCATGGTGTGTCTATAAGCTGGACTaGGCCTGCGGAAAAGCCCAC +
Preference number: 5 (lower is better)
Translates to: IPPVPATQGPWSSMPAWCVYKLD*ACGKAH
Trigger: GTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGAC...ACACCATGCAGGCATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp ATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATGCCTGCATGGTGTCCTGTCACAATGTACTaGCCATCTGGGCTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: IPPVPATQGPWSSMPAWCPVTMY*PSGLQH
Trigger: GTGCTGGAGCCCAGATGGCAAGTACATTGTGACAGG...ACACCATGCAGGCATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAGCACATGTGCCCTTGCTCTaGAGAGGGGCTGGTGAGGGA +
Preference number: 5 (lower is better)
Translates to: DGHPGSQLISSSSRSGAAHVPLL*RGAGEG
Trigger: TCCCTCACCAGCCCCTCTCAAGAGCAAGGGCACATG...TGCTGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACTTGAAGGGCACCCGGTaGGGCCGACTGTACTCCGAG +
Preference number: 5 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDLKGTR*GRLYSE
Trigger: CTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAA...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGAGAAAGCAAACTCGTaGAGGGCCCCCTCGCCCACC +
Preference number: 5 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDEKANS*RAPSPT
Trigger: GGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTC...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CCA 90 bp TGCAGCTCCGCTGAGTCAAAGTTGAACACGCGCAGAAACCCGTCCTaGCTCACACACGCTAAGAACTTGCCATCTGGGGAGAAAGCAAAC +
Preference number: 5 (lower is better)
Translates to: CSSAESKLNTRRNPS*LTHAKNLPSGEKAN
Trigger: GTTTGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTGTGAGCCAGGACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGGAGCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp CTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTACACTGACCCAGGATTaGTGCCCACGGCCTCTAGCT +
Preference number: 5 (lower is better)
Translates to: LETLLWRAKSSCCDGHPGTLTQD*CPRPLA
Trigger: AGCTAGAGGCCGTGGGCACAAATCCTGGGTCAGTGT...ACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACGAGAAAGCAAACTCGTaGAGGGCCCCCTCGCCCACC +
Preference number: 5 (lower is better)
Translates to: EALKNPFVHTREMLGSKNEKANS*RAPSPT
Trigger: GGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTC...GTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCATGTGCCCTTGCTCTaGAGAGGGGCTGGTGAGGGA +
Preference number: 5 (lower is better)
Translates to: LRREASAPRNTSVESKVLHVPLL*RGAGEG
Trigger: TCCCTCACCAGCCCCTCTCAAGAGCAAGGGCACATG...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTTTGAAGGGCACCCGGTaGGGCCGACTGTACTCCGAG +
Preference number: 5 (lower is better)
Translates to: SICTYKGDVGLQEQHLVPLKGTR*GRLYSE
Trigger: CTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAA...AGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTTCACAGTTACCAGTCTGGTCGTaGAGGTTTACGAAGGAGACG +
Preference number: 5 (lower is better)
Translates to: TLLWRAKSSCCDGHPGSQLPVWS*RFTKET
Trigger: CGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAA...CTGTGAACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CAA 90 bp GAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTCCGCTGAGTCAAAGTaGAACACGCGCAGAAACCCG +
Preference number: 5 (lower is better)
Translates to: EEKPVHLETLLWRAKSSCSAESK*NTRRNP
Trigger: CGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGGA...ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TTTCTTCCTTTAAATACCCCCTGTCCCAGCTACTCAGGGCCCATGGTCCTCTATGAATGTGGAAGGCTATaGGACCGTGGCAATGGAGGG +
Preference number: 5 (lower is better)
Translates to: FLPLNTPCPSYSGPMVLYECGRL*DRGNGG
Trigger: CCCTCCATTGCCACGGTCCAATAGCCTTCCACATTC...ATAGAGGACCATGGGCCCTGAGTAGCTGGGACAGGGGGTATTTAAAGGAAGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TGTGACGGTCACCCTGGTTCACAGCTGATCTCGTCAAGTTCTAGATCTGGTGCAAGGTCCCTTGTGGATTaGCTCTTGCAATTGTGCACG +
Preference number: 5 (lower is better)
Translates to: CDGHPGSQLISSSSRSGARSLVD*LLQLCT
Trigger: CGTGCACAATTGCAAGAGCAAATCCACAAGGGACCT...TGCACCAGATCTAGAACTTGACGAGATCAGCTGTGAACCAGGGTGACCGTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp ATTTGGGGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTACACACGCTAAGAACTaGCCATCTGGGGAGAAAGCA +
Preference number: 5 (lower is better)
Translates to: IWGVASSESECGGVLMLCTHAKN*PSGEKA
Trigger: TGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTGT...ACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCAAAGTAGCTTTTCATaGTACCGTGCAGCTCCGCTG +
Preference number: 5 (lower is better)
Translates to: GFWECSFKESHLDHSWNPQSSFS*YRAAPL
Trigger: CAGCGGAGCTGCACGGTACAATGAAAAGCTACTTTG...CGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCCTGTCACAATGTACTaGCCATCTGGGCTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: LRREASAPRNTSVESKVLPVTMY*PSGLQH
Trigger: GTGCTGGAGCCCAGATGGCAAGTACATTGTGACAGG...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp CCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCCTTTGCTAGCAGCATaGGAGACTGCTGAATGTGGA +
Preference number: 5 (lower is better)
Translates to: PVHLETLLWRAKSSCCDGPLLAA*ETAECG
Trigger: TCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGG...ACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS TCA 90 bp AGCCCACTAGGAGAGAGACGCTCTCCGCTGTGGCCGTTAGGTGGTTaGAATCATGACAAGTGGGCTGCGTTCCTTTGTATATCCTTTTAT +
Preference number: 5 (lower is better)
Translates to: SPLGERRSPLWPLGG*NHDKWAAFLCISFY
Trigger: ATAAAAGGATATACAAAGGAACGCAGCCCACTTGTCATGATTTCAACCACCTAACGGCCACAGCGGAGAGCGTCTCTCTCCTAGTGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGTTGGATCCCTGTGAGTaGAAGGGCACCCGGTTGGGC +
Preference number: 5 (lower is better)
Translates to: LQEQHLVPELLSKDVKEQLDPCE*KGTRLG
Trigger: GCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAA...CTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATTTGGATCCCTGTGAGTaGAAGGGCACCCGGTTGGGC +
Preference number: 5 (lower is better)
Translates to: HTREMLGSKNSILYLSYYLDPCE*KGTRLG
Trigger: GCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAA...ATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp GGGTTCTGGGAGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCAGGTTACGCGTGACTaGTCTATTAGTCTTTCCTCG +
Preference number: 5 (lower is better)
Translates to: GFWECSFKESHLDHSWNPQVTRD*SISLSS
Trigger: CGAGGAAAGACTAATAGACAAGTCACGCGTAACCTG...CGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACTCCCAGAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp CTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTCACCCTGGTGATTTGCTCTTGCAATaGTGCACGGCAAAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: LETLLWRAKSSCCDGHPGDLLLQ*CTAKLS
Trigger: AGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATC...ACCAGGGTGACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp ATTTGGGGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTCTTGTGGATTTGCTCTaGCAATTGTGCACGGCAAAG +
Preference number: 5 (lower is better)
Translates to: IWGVASSESECGGVLMLCLVDLL*QLCTAK
Trigger: CTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAG...ACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACCCCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTACACTGACCCAGGATTaGTGCCCACGGCCTCTAGCT +
Preference number: 5 (lower is better)
Translates to: SICTYKGDVGLQEQHLVPTLTQD*CPRPLA
Trigger: AGCTAGAGGCCGTGGGCACAAATCCTGGGTCAGTGT...AGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACGGTAGGTCCTGGAAGTTCTaGTCACTGTCACTAAACTCC +
Preference number: 5 (lower is better)
Translates to: PVHLETLLWRAKSSCCDGRSWKF*SLSLNS
Trigger: GGAGTTTAGTGACAGTGACAAGAACTTCCAGGACCT...ACCGTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGTCTATAAGCTGGACTaGGCCTGCGGAAAAGCCCAC +
Preference number: 5 (lower is better)
Translates to: SICTYKGDVGLQEQHLVPVYKLD*ACGKAH
Trigger: GTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGAC...AGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp GAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTCAGGTTACGCGTGACTaGTCTATTAGTCTTTCCTCG +
Preference number: 5 (lower is better)
Translates to: EEKPVHLETLLWRAKSSCQVTRD*SISLSS
Trigger: CGAGGAAAGACTAATAGACAAGTCACGCGTAACCTG...ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GACCTTTGTGACTCAATTCCCCAAGGTATGCTAATCATAAAACAGATAGCAACAGAGAAAGCAAACTCGTaGAGGGCCCCCTCGCCCACC +
Preference number: 5 (lower is better)
Translates to: DLCDSIPQGMLIIKQIATEKANS*RAPSPT
Trigger: GGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTC...TGTTGCTATCTGTTTTATGATTAGCATACCTTGGGGAATTGAGTCACAAAGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCAAAGTAGCTTTTCATaGTACCGTGCAGCTCCGCTG +
Preference number: 5 (lower is better)
Translates to: LRREASAPRNTSVESKVLQSSFS*YRAAPL
Trigger: CAGCGGAGCTGCACGGTACAATGAAAAGCTACTTTG...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp CAGAAAGTCTTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCCAAAGTAGCTTTTCATaGTACCGTGCAGCTCCGCTG +
Preference number: 5 (lower is better)
Translates to: QKVLRREASAPRNTSVESQSSFS*YRAAPL
Trigger: CAGCGGAGCTGCACGGTACAATGAAAAGCTACTTTG...GCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAAGACTTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp CTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCCCTGTCACAATGTACTaGCCATCTGGGCTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: LKNPFVHTREMLGSKNSIPVTMY*PSGLQH
Trigger: GTGCTGGAGCCCAGATGGCAAGTACATTGTGACAGG...GATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATACACTGACCCAGGATTaGTGCCCACGGCCTCTAGCT +
Preference number: 5 (lower is better)
Translates to: HTREMLGSKNSILYLSYYTLTQD*CPRPLA
Trigger: AGCTAGAGGCCGTGGGCACAAATCCTGGGTCAGTGT...ATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCGAATGTGGAAGGCTATaGGACCGTGGCAATGGAGGG +
Preference number: 5 (lower is better)
Translates to: IHLYIQGRCWAPRTASCTECGRL*DRGNGG
Trigger: CCCTCCATTGCCACGGTCCAATAGCCTTCCACATTC...GGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CAA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCGACAGAAGTGCAAACTaGCTGACCCCAGAGGTAATG +
Preference number: 5 (lower is better)
Translates to: LRREASAPRNTSVESKVLDRSAN*LTPEVM
Trigger: CATTACCTCTGGGGTCAGCAAGTTTGCACTTCTGTC...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTAGAGACGCGGACAGGATaGGATCCCTGTGAGTTGAAG +
Preference number: 5 (lower is better)
Translates to: ESICTYKGDVGLQEQHLVETRTG*DPCELK
Trigger: CTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTC...TACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTGTCTATAAGCTGGACTaGGCCTGCGGAAAAGCCCAC +
Preference number: 5 (lower is better)
Translates to: RIHLYIQGRCWAPRTASCVYKLD*ACGKAH
Trigger: GTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGAC...ACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGTCCGCTGAGTCAAAGTaGAACACGCGCAGAAACCCG +
Preference number: 5 (lower is better)
Translates to: LQEQHLVPELLSKDVKEQSAESK*NTRRNP
Trigger: CGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGGA...CTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp TTGAGAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCAGGTCCTGGAAGTTCTaGTCACTGTCACTAAACTCC +
Preference number: 5 (lower is better)
Translates to: LRREASAPRNTSVESKVLRSWKF*SLSLNS
Trigger: GGAGTTTAGTGACAGTGACAAGAACTTCCAGGACCT...GAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACCCTTTGCTAGCAGCATaGGAGACTGCTGAATGTGGA +
Preference number: 5 (lower is better)
Translates to: EALKNPFVHTREMLGSKNPLLAA*ETAECG
Trigger: TCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGG...GTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CAA 90 bp AAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTTGTGACAGTTTGTCACTGCTCTaGCTGGAAATGTGTCCCATA +
Preference number: 5 (lower is better)
Translates to: KPVHLETLLWRAKSSCCDSLSLL*LEMCPI
Trigger: TATGGGACACATTTCCAGCAAGAGCAGTGACAAACT...GTCACAACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GAAGAGAAGCCAGTGCACCTAGAAACACTTCTGTGGAGAGCAAAGTCCTCCTGTAGTTTGTCACTGCTCTaGCTGGAAATGTGTCCCATA +
Preference number: 5 (lower is better)
Translates to: EEKPVHLETLLWRAKSSCSLSLL*LEMCPI
Trigger: TATGGGACACATTTCCAGCAAGAGCAGTGACAAACT...ACAGGAGGACTTTGCTCTCCACAGAAGTGTTTCTAGGTGCACTGGCTTCTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp GGTGTCGCCTCTTCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGTGTCTTTTTAACTAGGTTCAGTTaGTCACTGCTCTTGCTGGAA +
Preference number: 5 (lower is better)
Translates to: GVASSESECGGVLMLCVFLTRFS*SLLLLE
Trigger: TTCCAGCAAGAGCAGTGACAAACTGAACCTAGTTAA...AAAGACACACAACATGAGGACTCCCCCACATTCTGACTCAGAAGAGGCGACACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS TCA 90 bp AGGTTCAGTTTGTCACTGCTCTTGCTGGAAATGTGTCCCATACTATaGTTTCGTTTACGGTCTTTCTCGTGGTGTCTCTCCTTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: RFSLSLLLLEMCPIL*FRLRSFSWCLSFRS
Trigger: TGACCGGAAGGAGAGACACCACGAGAAAGACCGTAAACGAAATCATAGTATGGGACACATTTCCAGCAAGAGCAGTGACAAACTGAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS GCA 90 bp CTCCATAGGGTCACTTTCTTCTACACTAGTAGTATAGGGATCAAATaGTACAACACTGACCCAGGATTTGTGCCCACGGCCTCTAGCTAT +
Preference number: 5 (lower is better)
Translates to: LHRVTFFYTSSIGIK*YNTDPGFVPTASSY
Trigger: ATAGCTAGAGGCCGTGGGCACAAATCCTGGGTCAGTGTTGTAGCATTTGATCCCTATACTACTAGTGTAGAAGAAAGTGACCCTATGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp ATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTTACCAGTCTGGTCGTaGAGGTTTACGAAGGAGACG +
Preference number: 5 (lower is better)
Translates to: IHLYIQGRCWAPRTASCTLPVWS*RFTKET
Trigger: CGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAA...GGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp CCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGCAGGTTACGCGTGACTaGTCTATTAGTCTTTCCTCG +
Preference number: 5 (lower is better)
Translates to: PFVHTREMLGSKNSILYLQVTRD*SISLSS
Trigger: CGAGGAAAGACTAATAGACAAGTCACGCGTAACCTG...CAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp TCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGATCCGCTGAGTCAAAGTaGAACACGCGCAGAAACCCG +
Preference number: 5 (lower is better)
Translates to: SKNSILYLSYYQRMSRSRSAESK*NTRRNP
Trigger: CGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGGA...TCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp GGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCGACAGAAGTGCAAACTaGCTGACCCCAGAGGTAATG +
Preference number: 5 (lower is better)
Translates to: GSKNSILYLSYYQRMSRSDRSAN*LTPEVM
Trigger: CATTACCTCTGGGGTCAGCAAGTTTGCACTTCTGTC...GCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CAA 90 bp ATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGGATTTGCTCTTGCAATaGTGCACGGCAAAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: ICTYKGDVGLQEQHLVPEDLLLQ*CTAKLS
Trigger: AGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATC...CTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp GGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCCTTGTGGATTTGCTCTaGCAATTGTGCACGGCAAAG +
Preference number: 5 (lower is better)
Translates to: GSKNSILYLSYYQRMSRSLVDLL*QLCTAK
Trigger: CTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAG...GCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AGCAGGAAGACAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTAGGTCCCTTGTGGATTaGCTCTTGCAATTGTGCACG +
Preference number: 5 (lower is better)
Translates to: SRKTRGTEESICTYKGDVRSLVD*LLQLCT
Trigger: CGTGCACAATTGCAAGAGCAAATCCACAAGGGACCT...AACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTGTCTTCCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AGCAGGAAGACAAGAGGCACTGAAGAATCCATTTGTACATACAAGGGAGATGTTACACACGCTAAGAACTaGCCATCTGGGGAGAAAGCA +
Preference number: 5 (lower is better)
Translates to: SRKTRGTEESICTYKGDVTHAKN*PSGEKA
Trigger: TGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTGT...AACATCTCCCTTGTATGTACAAATGGATTCTTCAGTGCCTCTTGTCTTCCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAGATTTGCTCTTGCAATaGTGCACGGCAAAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: TREMLGSKNSILYLSYYQDLLLQ*CTAKLS
Trigger: AGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATC...TTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTCTTGTGGATTTGCTCTaGCAATTGTGCACGGCAAAG +
Preference number: 5 (lower is better)
Translates to: RIHLYIQGRCWAPRTASCLVDLL*QLCTAK
Trigger: CTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAG...ACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp TCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAAGGTCCCTTGTGGATTaGCTCTTGCAATTGTGCACG +
Preference number: 5 (lower is better)
Translates to: SKNSILYLSYYQRMSRSRRSLVD*LLQLCT
Trigger: CGTGCACAATTGCAAGAGCAAATCCACAAGGGACCT...TCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp TCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATGTCAAGGAGCAGAACACACGCTAAGAACTaGCCATCTGGGGAGAAAGCA +
Preference number: 5 (lower is better)
Translates to: SKNSILYLSYYQRMSRSRTHAKN*PSGEKA
Trigger: TGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTGT...TCTGCTCCTTGACATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGTCCTGGAAGTTCTaGTCACTGTCACTAAACTCC +
Preference number: 5 (lower is better)
Translates to: TREMLGSKNSILYLSYYQRSWKF*SLSLNS
Trigger: GGAGTTTAGTGACAGTGACAAGAACTTCCAGGACCT...TTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 90 bp TTGGATAGTCTAGACTGTGTACTGTTCGCTCGATCTCTGCCAAAATaGAGAAGGTCCTGGAAGTTCTTGTCACTGTCACTAAACTCCATA +
Preference number: 5 (lower is better)
Translates to: LDSLDCVLFARSLPK*RRSWKFLSLSLNSI
Trigger: TATGGAGTTTAGTGACAGTGACAAGAACTTCCAGGACCTTCTTCATTTTGGCAGAGATCGAGCGAACAGTACACAGTCTAGACTATCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp TTCTACAGTTGGTACTGGCTGAGCAGGAAGACAAGAGGCACTGAAGAATCCATTTCCTCGTTAAAGAGCTaGCTGGTTTCTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: FYSWYWLSRKTRGTEESISSLKS*LVSFLI
Trigger: AATCAAGAAAGAAACCAGCAAGCTCTTTAACGAGGA...AATGGATTCTTCAGTGCCTCTTGTCTTCCTGCTCAGCCAGTACCAACTGTAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp AGTGTTCATTCAAAGAAAGTCACCTTGACCACTCCTGGAACCCGCCATGCAAATTCCTCGTTAAAGAGCTaGCTGGTTTCTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: SVHSKKVTLTTPGTRHANSSLKS*LVSFLI
Trigger: AATCAAGAAAGAAACCAGCAAGCTCTTTAACGAGGA...ATTTGCATGGCGGGTTCCAGGAGTGGTCAAGGTGACTTTCTTTGAATGAACACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222822.2
CDS TCA 90 bp TTACTAACTTTACCAGGCCTTGCCCATGTGCAAATAAATCCCTCCTaGCAAGCAGTGACTATACAGTCTTCAAGAAAAACCAATACCGTC +
Preference number: 5 (lower is better)
Translates to: LLTLPGLAHVQINPS*QAVTIQSSRKTNTV
Trigger: GACGGTATTGGTTTTTCTTGAAGACTGTATAGTCACTGCTTGTCAGGAGGGATTTATTTGCACATGGGCAAGGCCTGGTAAAGTTAGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS-3UTR CAA 90 bp AAAACTCCTTTATTCTACAGTTGGTACTGGCTGAGCAGGAAGACAAGAGGCACTATATCCTTTTATCTATaGGTTTACTCAGGTCGGCAG +
Preference number: 5 (lower is better)
Translates to: KTPLFYSWYWLSRKTRGTISFYL*VYSGRQ
Trigger: CTGCCGACCTGAGTAAACCAATAGATAAAAGGATAT...AGTGCCTCTTGTCTTCCTGCTCAGCCAGTACCAACTGTAGAATAAAGGAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGGTGGGCTGCGTTCCTTaGTATATCCTTTTATCTATT +
Preference number: 5 (lower is better)
Translates to: ICTYKGDVGLQEQHLVPEVGCVP*YILLSI
Trigger: AATAGATAAAAGGATATACAAAGGAACGCAGCCCAC...CTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ACTGAAGAATCCATTTGTACATACAAGGGAGATGTTGGGCTCCAAGAACAGCATTTAACTAGGTTCAGTTaGTCACTGCTCTTGCTGGAA +
Preference number: 5 (lower is better)
Translates to: TEESICTYKGDVGLQEQHLTRFS*SLLLLE
Trigger: TTCCAGCAAGAGCAGTGACAAACTGAACCTAGTTAA...ATGCTGTTCTTGGAGCCCAACATCTCCCTTGTATGTACAAATGGATTCTTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046331.5
CDS-3UTR CAA 90 bp AAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGATATCCTTTTATCTATaGGTTTACTCAGGTCGGCAG +
Preference number: 5 (lower is better)
Translates to: KGDVGLQEQHLVPELLSKISFYL*VYSGRQ
Trigger: CTGCCGACCTGAGTAAACCAATAGATAAAAGGATAT...CTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp ACAAGGGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAGTGGGCTGCGTTCCTTaGTATATCCTTTTATCTATT +
Preference number: 5 (lower is better)
Translates to: TREMLGSKNSILYLSYYQVGCVP*YILLSI
Trigger: AATAGATAAAAGGATATACAAAGGAACGCAGCCCAC...TTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCCCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS-3UTR CAA 90 bp GGAGATGTTGGGCTCCAAGAACAGCATCTTGTACCTGAGTTATTATCAAAGGATTCCTCGTTAAAGAGCTaGCTGGTTTCTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: GDVGLQEQHLVPELLSKDSSLKS*LVSFLI
Trigger: AATCAAGAAAGAAACCAGCAAGCTCTTTAACGAGGA...ATCCTTTGATAATAACTCAGGTACAAGATGCTGTTCTTGGAGCCCAACATCTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 90 bp GTGACTATACAGTCTTCAAGAAAAACCAATACCGTCAGTCTTTCATaGGCTATCTTTTTACAGATCAGTGGCTCTAACAAGGGAACATCT +
Preference number: 5 (lower is better)
Translates to: VTIQSSRKTNTVSLS*AIFLQISGSNKGTS
Trigger: AGATGTTCCCTTGTTAGAGCCACTGATCTGTAAAAAGATAGCTCATGAAAGACTGACGGTATTGGTTTTTCTTGAAGACTGTATAGTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS GCA 72 bp TTGAAGGGCACCCGGTTGGGCCGACTGTACTCCGAGTaGGGCAGCAGCCTGTACAGACCTTCTCGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: LKGTRLGRLYSE*GSSLYRPSRVV
Trigger: CACCACCCGAGAAGGTCTGTACAGGCTGCTGCCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 90 bp GAGACGCGGACAGGATTGGATCCCTGTGAGTTGAAGGGCACCCGGTaGGGCCGACTGTACTCCGAGTGCGGCAGCAGCCTGTACAGACCT +
Preference number: 6 (lower is better)
Translates to: ETRTGLDPCELKGTR*GRLYSECGSSLYRP
Trigger: AGGTCTGTACAGGCTGCTGCCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp ACAGGATTGGATCCCTGTGAGTTGAAGGGCACCCGGTaGGGCCGACTGTACTCCGAGTGCGGCAGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: TGLDPCELKGTR*GRLYSECGSSL
Trigger: CAGGCTGCTGCCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 72 bp CGAAGGAGACGCGGACAGGATTGGATCCCTGTGAGTTaGAGGGCACCCGGTTGGGCCGACTGTACTCCGAGT +
Preference number: 6 (lower is better)
Translates to: RRRRGQDWIPVS*RAPGWADCTPS
Trigger: ACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp ACGAAGGAGACGCGGACAGGATTGGATCCCTGTGAGTaGAAGGGCACCCGGTTGGGCCGACTGTACTCCGAG +
Preference number: 6 (lower is better)
Translates to: TKETRTGLDPCE*KGTRLGRLYSE
Trigger: CTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 90 bp TTGAGGTTTACGAAGGAGACGCGGACAGGATTGGATCCCTGTGAGTaGAAGGGCACCCGGTTGGGCCGACTGTACTCCGAGTGCGGCAGC +
Preference number: 6 (lower is better)
Translates to: LRFTKETRTGLDPCE*KGTRLGRLYSECGS
Trigger: GCTGCCGCACTCGGAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 90 bp CGGCCCACACTGAAGCACAGGCGGTTGCCATTACCAGTCTGGTCGTaGAGGTTTACGAAGGAGACGCGGACAGGATTGGATCCCTGTGAG +
Preference number: 6 (lower is better)
Translates to: RPTLKHRRLPLPVWS*RFTKETRTGLDPCE
Trigger: CTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAATGGCAACCGCCTGTGCTTCAGTGTGGGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 90 bp TTGAGGGCCCCCTCGCCCACCGTCCACTTAAGGTCCCTTGTGGATTaGCTCTTGCAATTGTGCACGGCAAAGCTCTCTCCCTGCTTCAGG +
Preference number: 6 (lower is better)
Translates to: LRAPSPTVHLRSLVD*LLQLCTAKLSPCFR
Trigger: CCTGAAGCAGGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAGGGACCTTAAGTGGACGGTGGGCGAGGGGGCCCTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS TCA 72 bp GTTTACGAAGGAGACGCGGACAGGATTGGATCCCTGTaGGTTGAAGGGCACCCGGTTGGGCCGACTGTACTC +
Preference number: 6 (lower is better)
Translates to: VYEGDADRIGSL*VEGHPVGPTVL
Trigger: GAGTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp TGGTCGTTGAGGTTTACGAAGGAGACGCGGACAGGATaGGATCCCTGTGAGTTGAAGGGCACCCGGTTGGGC +
Preference number: 6 (lower is better)
Translates to: WSLRFTKETRTG*DPCELKGTRLG
Trigger: GCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp GGCACAGAGTTCCCAGGTGTAGTGACAGCGCTCCCATaGCTTCCGGCAGGCAGACCTGTGGCATTCATAACG +
Preference number: 6 (lower is better)
Translates to: GTEFPGVVTALP*LPAGRPVAFIT
Trigger: CGTTATGAATGCCACAGGTCTGCCTGCCGGAAGCAATGGGAGCGCTGTCACTACACCTGGGAACTCTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp TTACCAGTCTGGTCGTTGAGGTTTACGAAGGAGACGCGGACAGGATaGGATCCCTGTGAGTTGAAGGGCACCCGGTTGGGCCGACTGTAC +
Preference number: 6 (lower is better)
Translates to: LPVWSLRFTKETRTG*DPCELKGTRLGRLY
Trigger: GTACAGTCGGCCCAACCGGGTGCCCTTCAACTCACAGGGATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 90 bp CTCACACACGCTAAGAACTTGCCATCTGGGGAGAAAGCAAACTCGTaGAGGGCCCCCTCGCCCACCGTCCACTTAAGGTCCCTTGTGGAT +
Preference number: 6 (lower is better)
Translates to: LTHAKNLPSGEKANS*RAPSPTVHLRSLVD
Trigger: ATCCACAAGGGACCTTAAGTGGACGGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTCCCCAGATGGCAAGTTCTTAGCGTGTGTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp TCGTGGTGTCTCTCCTTCCGGTCATGTAGCGACAGAAGTGCAAACTaGCTGACCCCAGAGGTAATGGCCCCGTCCATGACGCTGCCTTTG +
Preference number: 6 (lower is better)
Translates to: SWCLSFRSCSDRSAN*LTPEVMAPSMTLPL
Trigger: CAAAGGCAGCGTCATGGACGGGGCCATTACCTCTGGGGTCAGCAAGTTTGCACTTCTGTCGCTACATGACCGGAAGGAGAGACACCACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CCA 72 bp CCCACACTGAAGCACAGGCGGTTGCCATTACCAGTCTaGTCGTTGAGGTTTACGAAGGAGACGCGGACAGGA +
Preference number: 6 (lower is better)
Translates to: PTLKHRRLPLPV*SLRFTKETRTG
Trigger: TCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAATGGCAACCGCCTGTGCTTCAGTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp CCCTCGCCCACCGTCCACTTAAGGTCCCTTGTGGATTaGCTCTTGCAATTGTGCACGGCAAAGCTCTCTCCC +
Preference number: 6 (lower is better)
Translates to: PSPTVHLRSLVD*LLQLCTAKLSP
Trigger: GGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAGGGACCTTAAGTGGACGGTGGGCGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 72 bp ACCCCAGAGGTAATGGCCCCGTCCATGACGCTGCCTTaGCTAGCAGCATTGGAGACTGCTGAATGTGGAAGG +
Preference number: 6 (lower is better)
Translates to: TPEVMAPSMTLP*LAALETAECGR
Trigger: CCTTCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGGCAGCGTCATGGACGGGGCCATTACCTCTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 72 bp CTCTCCTTCCGGTCATGTAGCGACAGAAGTGCAAACTaGCTGACCCCAGAGGTAATGGCCCCGTCCATGACG +
Preference number: 6 (lower is better)
Translates to: LSFRSCSDRSAN*LTPEVMAPSMT
Trigger: CGTCATGGACGGGGCCATTACCTCTGGGGTCAGCAAGTTTGCACTTCTGTCGCTACATGACCGGAAGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp AATGGAGGGGGCACAGAGTTCCCAGGTGTAGTGACAGCGCTCCCATaGCTTCCGGCAGGCAGACCTGTGGCATTCATAACGTTTGCATGT +
Preference number: 6 (lower is better)
Translates to: NGGGTEFPGVVTALP*LPAGRPVAFITFAC
Trigger: ACATGCAAACGTTATGAATGCCACAGGTCTGCCTGCCGGAAGCAATGGGAGCGCTGTCACTACACCTGGGAACTCTGTGCCCCCTCCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp CCAGAGGTAATGGCCCCGTCCATGACGCTGCCTTTGCTAGCAGCATaGGAGACTGCTGAATGTGGAAGGCTATTGGACCGTGGCAATGGA +
Preference number: 6 (lower is better)
Translates to: PEVMAPSMTLPLLAA*ETAECGRLLDRGNG
Trigger: TCCATTGCCACGGTCCAATAGCCTTCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGGCAGCGTCATGGACGGGGCCATTACCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CCA 72 bp GCTGAGTCAAAGTTGAACACGCGCAGAAACCCGTCCTaGCTCACACACGCTAAGAACTTGCCATCTGGGGAG +
Preference number: 6 (lower is better)
Translates to: AESKLNTRRNPS*LTHAKNLPSGE
Trigger: CTCCCCAGATGGCAAGTTCTTAGCGTGTGTGAGCCAGGACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp AACTTGCTGACCCCAGAGGTAATGGCCCCGTCCATGACGCTGCCTTaGCTAGCAGCATTGGAGACTGCTGAATGTGGAAGGCTATTGGAC +
Preference number: 6 (lower is better)
Translates to: NLLTPEVMAPSMTLP*LAALETAECGRLLD
Trigger: GTCCAATAGCCTTCCACATTCAGCAGTCTCCAATGCTGCTAGCAAAGGCAGCGTCATGGACGGGGCCATTACCTCTGGGGTCAGCAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CCA 72 bp GGCAGCAGCCTGTACAGACCTTCTCGGGTGGTGAAATaGGTCTTAATCTCGTTCGTCTCCTTTCCTCTTCCC +
Preference number: 6 (lower is better)
Translates to: GSSLYRPSRVVK*VLISFVSFPLP
Trigger: GGGAAGAGGAAAGGAGACGAACGAGATTAAGACCCATTTCACCACCCGAGAAGGTCTGTACAGGCTGCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp CTGAAGCACAGGCGGTTGCCATTACCAGTCTGGTCGTaGAGGTTTACGAAGGAGACGCGGACAGGATTGGAT +
Preference number: 6 (lower is better)
Translates to: LKHRRLPLPVWS*RFTKETRTGLD
Trigger: ATCCAATCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGACTGGTAATGGCAACCGCCTGTGCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp CCCACCGTCCACTTAAGGTCCCTTGTGGATTTGCTCTaGCAATTGTGCACGGCAAAGCTCTCTCCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: PTVHLRSLVDLL*QLCTAKLSPCF
Trigger: GAAGCAGGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAGGGACCTTAAGTGGACGGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS TCA 72 bp GGAGAGAGACGCTCTCCGCTGTGGCCGTTAGGTGGTTaGAATCATGACAAGTGGGCTGCGTTCCTTTGTATA +
Preference number: 6 (lower is better)
Translates to: GERRSPLWPLGG*NHDKWAAFLCI
Trigger: TATACAAAGGAACGCAGCCCACTTGTCATGATTTCAACCACCTAACGGCCACAGCGGAGAGCGTCTCTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS TCA 72 bp CCCAAAGTAGCTTTTCATTGTACCGTGCAGCTCCGCTaGGTCAAAGTTGAACACGCGCAGAAACCCGTCCTG +
Preference number: 6 (lower is better)
Translates to: PKVAFHCTVQLR*VKVEHAQKPVL
Trigger: CAGGACGGGTTTCTGCGCGTGTTCAACTTTGACTCAGCGGAGCTGCACGGTACAATGAAAAGCTACTTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS GCA 72 bp CACTTAAGGTCCCTTGTGGATTTGCTCTTGCAATTGTaGACGGCAAAGCTCTCTCCCTGCTTCAGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: HLRSLVDLLLQL*TAKLSPCFRSW
Trigger: CCAGCTCCTGAAGCAGGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAGGGACCTTAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 72 bp GTCCACTTAAGGTCCCTTGTGGATTTGCTCTTGCAATaGTGCACGGCAAAGCTCTCTCCCTGCTTCAGGAGC +
Preference number: 6 (lower is better)
Translates to: VHLRSLVDLLLQ*CTAKLSPCFRS
Trigger: GCTCCTGAAGCAGGGAGAGAGCTTTGCCGTGCACAATTGCAAGAGCAAATCCACAAGGGACCTTAAGTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CCA 72 bp CTGGTTTCTTTCTTGATTGGGTCTATAAGCTGGACTTaGCCTGCGGAAAAGCCCACTAGGAGAGAGACGCTC +
Preference number: 6 (lower is better)
Translates to: LVSFLIGSISWT*PAEKPTRRETL
Trigger: GAGCGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGACCCAATCAAGAAAGAAACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CCA 72 bp TGCTCCACATTGTACGAGTACATGTTCCCACTTGAATaGGCTACTAGGAAAAGGCTGTCCGAACCAGGGACC +
Preference number: 6 (lower is better)
Translates to: CSTLYEYMFPLE*ATRKRLSEPGT
Trigger: GGTCCCTGGTTCGGACAGCCTTTTCCTAGTAGCCCATTCAAGTGGGAACATGTACTCGTACAATGTGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CAA 90 bp TGGTGCCGTAAGTATGCTCCACATTGTACGAGTACATGTTCCCACTaGAATGGGCTACTAGGAAAAGGCTGTCCGAACCAGGGACCCATT +
Preference number: 6 (lower is better)
Translates to: WCRKYAPHCTSTCSH*NGLLGKGCPNQGPI
Trigger: AATGGGTCCCTGGTTCGGACAGCCTTTTCCTAGTAGCCCATTCAAGTGGGAACATGTACTCGTACAATGTGGAGCATACTTACGGCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CAA 72 bp AAGTGGGCTGCGTTCCTTTGTATATCCTTTTATCTATaGGTTTACTCAGGTCGGCAGCCTTGCGGACCCCCT +
Preference number: 6 (lower is better)
Translates to: KWAAFLCISFYL*VYSGRQPCGPP
Trigger: AGGGGGTCCGCAAGGCTGCCGACCTGAGTAAACCAATAGATAAAAGGATATACAAAGGAACGCAGCCCACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
CDS CAA 72 bp TCACAGCTGATAGGGCGGCTGTCTGTCGAGTTCTGTTaGGATAGTCTAGACTGTGTACTGTTCGCTCGATCT +
Preference number: 6 (lower is better)
Translates to: SQLIGRLSVEFC*DSLDCVLFARS
Trigger: AGATCGAGCGAACAGTACACAGTCTAGACTATCCAAACAGAACTCGACAGACAGCCGCCCTATCAGCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221658.2
CDS CAA 72 bp GCTACTAGGAAAAGGCTGTCCGAACCAGGGACCCATTaGACACAGGTTACGCGTGACTTGTCTATTAGTCTT +
Preference number: 6 (lower is better)
Translates to: ATRKRLSEPGTH*TQVTRDLSISL
Trigger: AAGACTAATAGACAAGTCACGCGTAACCTGTGTCAAATGGGTCCCTGGTTCGGACAGCCTTTTCCTAGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CAA 72 bp GTAACACTTACAGGGCGGCTGTCTGTCGAGTTCTGTTaGGATAGTCTAGACTGTGTACTGTTCGCTCGATCT +
Preference number: 6 (lower is better)
Translates to: VTLTGRLSVEFC*DSLDCVLFARS
Trigger: AGATCGAGCGAACAGTACACAGTCTAGACTATCCAAACAGAACTCGACAGACAGCCGCCCTGTAAGTGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 90 bp CTTGAATGGGCTACTAGGAAAAGGCTGTCCGAACCAGGGACCCATTaGACACAGGTTACGCGTGACTTGTCTATTAGTCTTTCCTCGTTA +
Preference number: 6 (lower is better)
Translates to: LEWATRKRLSEPGTH*TQVTRDLSISLSSL
Trigger: TAACGAGGAAAGACTAATAGACAAGTCACGCGTAACCTGTGTCAAATGGGTCCCTGGTTCGGACAGCCTTTTCCTAGTAGCCCATTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS CAA 90 bp AACCGATACGTAACACTTACAGGGCGGCTGTCTGTCGAGTTCTGTTaGGATAGTCTAGACTGTGTACTGTTCGCTCGATCTCTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: NRYVTLTGRLSVEFC*DSLDCVLFARSLPK
Trigger: TTTTGGCAGAGATCGAGCGAACAGTACACAGTCTAGACTATCCAAACAGAACTCGACAGACAGCCGCCCTGTAAGTGTTACGTATCGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS TCA 72 bp CTACTAGGAAAAGGCTGTCCGAACCAGGGACCCATTTaGCACAGGTTACGCGTGACTTGTCTATTAGTCTTT +
Preference number: 6 (lower is better)
Translates to: LLGKGCPNQGPI*HRLRVTCLLVF
Trigger: AAAGACTAATAGACAAGTCACGCGTAACCTGTGTCAAATGGGTCCCTGGTTCGGACAGCCTTTTCCTAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS GCA 72 bp GTCACTTTCTTCTACACTAGTAGTATAGGGATCAAATaGTACAACACTGACCCAGGATTTGTGCCCACGGCC +
Preference number: 6 (lower is better)
Translates to: VTFFYTSSIGIK*YNTDPGFVPTA
Trigger: GGCCGTGGGCACAAATCCTGGGTCAGTGTTGTAGCATTTGATCCCTATACTACTAGTGTAGAAGAAAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS TCA 72 bp CTAGACTGTGTACTGTTCGCTCGATCTCTGCCAAAATaGAGAAGGTCCTGGAAGTTCTTGTCACTGTCACTA +
Preference number: 6 (lower is better)
Translates to: LDCVLFARSLPK*RRSWKFLSLSL
Trigger: TAGTGACAGTGACAAGAACTTCCAGGACCTTCTTCATTTTGGCAGAGATCGAGCGAACAGTACACAGTCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS TCA 72 bp TTGTCACTGCTCTTGCTGGAAATGTGTCCCATACTATaGTTTCGTTTACGGTCTTTCTCGTGGTGTCTCTCC +
Preference number: 6 (lower is better)
Translates to: LSLLLLEMCPIL*FRLRSFSWCLS
Trigger: GGAGAGACACCACGAGAAAGACCGTAAACGAAATCATAGTATGGGACACATTTCCAGCAAGAGCAGTGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 72 bp AGTCTTTCCTCGTTAAAGAGCTTGCTGGTTTCTTTCTaGATTGGGTCTATAAGCTGGACTTGGCCTGCGGAA +
Preference number: 6 (lower is better)
Translates to: SLSSLKSLLVSF*IGSISWTWPAE
Trigger: TTCCGCAGGCCAAGTCCAGCTTATAGACCCAATCAAGAAAGAAACCAGCAAGCTCTTTAACGAGGAAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2
CDS TCA 72 bp TTACCAGGCCTTGCCCATGTGCAAATAAATCCCTCCTaGCAAGCAGTGACTATACAGTCTTCAAGAAAAACC +
Preference number: 6 (lower is better)
Translates to: LPGLAHVQINPS*QAVTIQSSRKT
Trigger: GGTTTTTCTTGAAGACTGTATAGTCACTGCTTGTCAGGAGGGATTTATTTGCACATGGGCAAGGCCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046331.5
ENSMUST00000222822.2
CDS CAA 72 bp GCTGGGTCCGTTTTGGCTTTATTAACTAGGTTCAGTTaGTCACTGCTCTTGCTGGAAATGTGTCCCATACTA +
Preference number: 6 (lower is better)
Translates to: AGSVLALLTRFS*SLLLLEMCPIL
Trigger: TAGTATGGGACACATTTCCAGCAAGAGCAGTGACAAACTGAACCTAGTTAATAAAGCCAAAACGGACCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221980.2
ENSMUST00000222822.2
CDS CAA 72 bp CGTGACTTGTCTATTAGTCTTTCCTCGTTAAAGAGCTaGCTGGTTTCTTTCTTGATTGGGTCTATAAGCTGG +
Preference number: 6 (lower is better)
Translates to: RDLSISLSSLKS*LVSFLIGSISW
Trigger: CCAGCTTATAGACCCAATCAAGAAAGAAACCAGCAAGCTCTTTAACGAGGAAAGACTAATAGACAAGTCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046331.5
ENSMUST00000221658.2
ENSMUST00000222822.2