RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDHD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037572

Ensembl transcript IDs: ENSMUST00000111790.2, ENSMUST00000111792.9, ENSMUST00000187531.8, ENSMUST00000227041.2

Found 318 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTTGTGTGTTGTTTTGCGGCAGTAAGGGAACCAGGGCCTGCGCATaGTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCTA +
Preference number: 1 (lower is better)
Translates to: CCVLFCGSKGTRACA*LGKPSTTELHTQPL
Trigger: TAGGGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCAAAACAACACACAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR GCA 90 bp CCACTTTGTTGTGTGTTGTTTTGCGGCAGTAAGGGAACCAGGGCCTaGGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAG +
Preference number: 1 (lower is better)
Translates to: PLCCVLFCGSKGTRA*ACLGKPSTTELHTQ
Trigger: CTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCAAAACAACACACAACAAAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR GCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTaGGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCC +
Preference number: 1 (lower is better)
Translates to: GVPDTGKSPLCCVLF*GSKGTRACACLGKP
Trigger: GGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR TCA 90 bp GTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTaGTGCCCTCTTCCGGAGTGTCTGAGGACAGCTACAGTGTACTTA +
Preference number: 1 (lower is better)
Translates to: VPATTWWLTTIRNEI*CPLPECLRTATVYL
Trigger: TAAGTACACTGTAGCTGTCCTCAGACACTCCGGAAGAGGGCATCAGATTTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR GCA 90 bp ATATTTTCGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCATCGACTaGTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGT +
Preference number: 1 (lower is better)
Translates to: IFSGWRDGSVVKSID*SSEGPEFKSQQPHG
Trigger: ACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCTTAACCACTGAGCCATCTCGCCAGCCCGAAAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR CCA 90 bp AGAAATATTAGAAAAATATATTTTCGGGCTGGCGAGATGGCTCAGTaGTTAAGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGT +
Preference number: 1 (lower is better)
Translates to: RNIRKIYFRAGEMAQ*LRASTALLKVLSSS
Trigger: ACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCTTAACCACTGAGCCATCTCGCCAGCCCGAAAATATATTTTTCTAATATTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR-3UTR GCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTACCCAGCCCCTACACTaGCTTATGAGAACCACGCTG +
Preference number: 2 (lower is better)
Translates to: CGSKGTRACACLGKPSTTTQPLH*LMRTTL
Trigger: CAGCGTGGTTCTCATAAGGCAGTGTAGGGGCTGGGT...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR-3UTR TCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTCAAGCCCTCCACCACTaGGCTGCACACCCAGCCCCT +
Preference number: 2 (lower is better)
Translates to: HFCSWTAEESPQTALTCGQALHH*AAHPAP
Trigger: AGGGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTG...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR-3UTR TCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGAATCCAAGAGAAGCTaGAGCCAGGTCTCACTACTT +
Preference number: 2 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSESKRS*SQVSLL
Trigger: AAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTGTTGTGTGTTGTTTTaGGGCAGTAAGGGAACCAGG +
Preference number: 2 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMCCVLF*GSKGTR
Trigger: CCTGGTTCCCTTACTGCCGCAAAACAACACACAACA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR-3UTR GCA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGGTTAAGAGCATCGACTaGTCTTCTGAAGGTCCTGAG +
Preference number: 2 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMVKSID*SSEGPE
Trigger: CTCAGGACCTTCAGAAGAGCAGTCGATGCTCTTAAC...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR-3UTR CCA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGGGAGAATTGGCTCAGTaGTTAGGAGCACTTGCTATT +
Preference number: 2 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMGELAQ*LGALAI
Trigger: AATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCC...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR TCA 72 bp CAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTaGGCTGCACACCCAGCCCCTACACTGCCTTATGAG +
Preference number: 3 (lower is better)
Translates to: QGLRMLRQALHH*AAHPAPTLPYE
Trigger: CTCATAAGGCAGTGTAGGGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR GCA 72 bp TGTGTGTTGTTTTGCGGCAGTAAGGGAACCAGGGCCTaGGCATGCTTAGGCAAGCCCTCCACCACTGAGCTG +
Preference number: 3 (lower is better)
Translates to: CVLFCGSKGTRA*ACLGKPSTTEL
Trigger: CAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCAAAACAACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR GCA 72 bp GGCTGGCGAGATGGCTCAGTGGTTAAGAGCATCGACTaGTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAA +
Preference number: 3 (lower is better)
Translates to: GWRDGSVVKSID*SSEGPEFKSQQ
Trigger: TTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCTTAACCACTGAGCCATCTCGCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR-3UTR CAA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACCACTTTGTTGTGTGTaGTTTTGCGGCAGTAAGGGA +
Preference number: 3 (lower is better)
Translates to: MTMALLLQNLNKGGKALGPLCCV*FCGSKG
Trigger: TCCCTTACTGCCGCAAAACAACACACAACAAAGTGG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR CCA 72 bp AGAAAAATATATTTTCGGGCTGGCGAGATGGCTCAGTaGTTAAGAGCATCGACTGCTCTTCTGAAGGTCCTG +
Preference number: 3 (lower is better)
Translates to: RKIYFRAGEMAQ*LRASTALLKVL
Trigger: CAGGACCTTCAGAAGAGCAGTCGATGCTCTTAACCACTGAGCCATCTCGCCAGCCCGAAAATATATTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
3UTR TCA 72 bp CTAAAGGTTAAAAGACGTCCAGAATCCAAGAGAAGCTaGAGCCAGGTCTCACTACTTCCTGACAGACAATCC +
Preference number: 3 (lower is better)
Translates to: LKVKRRPESKRS*SQVSLLPDRQS
Trigger: GGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTTTAACCTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR TCA 72 bp AACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTaGACAAGTCTTAAGACTGAGGCTTTTAGTGACTTT +
Preference number: 3 (lower is better)
Translates to: NKGGKALGGTVM*TSLKTEAFSDF
Trigger: AAAGTCACTAAAAGCCTCAGTCTTAAGACTTGTTCACATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
3UTR-3UTR CAA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGTCCTCTTCTGGACTCTaGGGTACATACATACACATG +
Preference number: 3 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMSSSGL*GTYIHM
Trigger: CATGTGTATGTATGTACCCAAGAGTCCAGAAGAGGA...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCATATCCGACTACAAGTaGGATGCCAGGCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPISDYK*DARPGH
Trigger: GTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATAT...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAAGGGCTTTTGTCGTaGGGTTGGCATGGGCCCATC +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTEGLLS*GWHGPI
Trigger: GATGGGCCCATGCCAACCCCACGACAAAAGCCCTTC...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCGGGATGCACCTTAGCTaGTGGGGATTCTCATGGATA +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPGMHLS*WGFSWI
Trigger: TATCCATGAGAATCCCCAGCAGCTAAGGTGCATCCC...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTCTCCGTGTCCTGCCATaGATACCACAGGTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTLRVLP*IPQVQE
Trigger: TTCCTGGACCTGTGGTATCCATGGCAGGACACGGAG...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCACCAGGTTACTATATTaGGTGTCTGGGAGATGGAAC +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPTRLLY*VSGRWN
Trigger: GTTCCATCTCCCAGACACTCAATATAGTAACCTGGT...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCGAAATGTTTGCTGCTaGCTGTTATCCATCACATCC +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPRNVCC*LLSITS
Trigger: GGATGTGATGGATAACAGCCAGCAGCAAACATTTCG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCGAGGAATTGGCACTTTaGAATAAGTTCTGCCCATGG +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPEELAL*NKFCPW
Trigger: CCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTC...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCAGAAGACTTCTTTCTaGACACCTCCAATAGTGAAC +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPQKTSF*TPPIVN
Trigger: GTTCACTATTGGAGGTGTTCAGAAAGAAGTCTTCTG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCTTTCTGGAAATAGGATaGTGCAGATGCCTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPFLEIG*CRCLLR
Trigger: TCTAAGCAGGCATCTGCAGCATCCTATTTCCAGAAA...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCTTCTCTTCTTCTGACTaGGTTTCTGCCAATTCAGCT +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPFSSSD*VSANSA
Trigger: AGCTGAATTGGCAGAAACCCAGTCAGAAGAAGAGAA...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTCTGGAACCCAGTCTTTaGCCTTTGGTTTTCCGAGTT +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTLEPSL*PLVFRV
Trigger: AACTCGGAAAACCAAAGGCCAAAGACTGGGTTCCAG...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCTCTATGATAAACAATaGAAAGCTGTTCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPLYDKQ*KAVLRV
Trigger: GACACGGAGAACAGCTTTGCATTGTTTATCATAGAG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTCGAAATGTTTGCTGCTaGCTGTTATCCATCACATCC +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTRNVCC*LLSITS
Trigger: GGATGTGATGGATAACAGCCAGCAGCAAACATTTCG...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGGGCCCATCATAAAATaGCCTTTGGGGTCTTATAAG +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTGPIIK*PLGSYK
Trigger: CTTATAAGACCCCAAAGGCCATTTTATGATGGGCCC...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTAATAGATGTGTTGCATaGTGGATAGAGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTNRCVA*WIEVSW
Trigger: CCATGACACCTCTATCCATCATGCAACACATCTATT...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTCAGAAGACTTCTTTCTaGACACCTCCAATAGTGAAC +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTQKTSF*TPPIVN
Trigger: GTTCACTATTGGAGGTGTTCAGAAAGAAGTCTTCTG...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTTTCTTTCTCTTCTTCTaGCTGGGTTTCTGCCAATTC +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTFFLFF*LGFCQF
Trigger: GAATTGGCAGAAACCCAGTCAGAAGAAGAGAAAGAA...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCATCAGCACTTTCACATaGCAACAAAATAGCTTCATG +
Preference number: 4 (lower is better)
Translates to: RACACLGKPSTTELHTQPISTFT*QQNSFM
Trigger: CATGAAGCTATTTTGTTGGCATGTGAAAGTGCTGAT...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCGTCGTGGGGTTGGCATaGGCCCATCATAAAATGGCC +
Preference number: 4 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVVVGLA*AHHKMA
Trigger: GGCCATTTTATGATGGGCCCATGCCAACCCCACGAC...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGAAGGGCTTTTGTCGTaGGGTTGGCATGGGCCCATC +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMEGLLS*GWHGPI
Trigger: GATGGGCCCATGCCAACCCCACGACAAAAGCCCTTC...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp TCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCCTCCGTGTCCTGCCATaGATACCACAGGTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: SEGPEFKSQQPHGGSQPSLRVLP*IPQVQE
Trigger: TTCCTGGACCTGTGGTATCCATGGCAGGACACGGAG...GGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCTGTTGCCGGCCCCATTaGAGACCACATGGTTTGCAT +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLCCRPH*RPHGLH
Trigger: ATGCAAACCATGTGGTCTTCAATGGGGCCGGCAACA...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCTCGTCTCCCAAGTCATaGTCTGCAGCCAGCATGATG +
Preference number: 4 (lower is better)
Translates to: SEGPEFKSQQPHGGSQPSSSPKS*SAASMM
Trigger: CATCATGCTGGCTGCAGATCATGACTTGGGAGACGA...GGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCGGTAGGATTTCCGTGTaGGAGGAAGAGGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLGRISV*EEEGHH
Trigger: ATGGTGACCCTCTTCCTCTCACACGGAAATCCTACC...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTAAATGCACGGCATTTTaGGTCATTAGATCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTKCTAF*VIRSAS
Trigger: ACTTGCTGATCTAATGACTCAAAATGCCGTGCATTT...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCCGACTACAAGTGGGATaGCAGGCCAGGCCACAAATT +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLRLQVG*QARPQI
Trigger: AATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCG...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTCTGTTCTCCGTGTCCTaGCATGGATACCACAGGTCC +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVLFSVS*HGYHRS
Trigger: GGACCTGTGGTATCCATGGCAGGACACGGAGAACAG...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACTGTTCTCCGTGTCCTaGCATGGATACCACAGGTCC +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRLFSVS*HGYHRS
Trigger: GGACCTGTGGTATCCATGGCAGGACACGGAGAACAG...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTAGTGCTCTCTTATGTTaGATACAGGAGTCCATGTAT +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTSALLC*IQESMY
Trigger: ATACATGGACTCCTGTATGCAACATAAGAGAGCACT...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTATATCCGACTACAAGTaGGATGCCAGGCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVISDYK*DARPGH
Trigger: GTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATAT...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGAAGGGCTTTTGTCGTaGGGTTGGCATGGGCCCATC +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVEGLLS*GWHGPI
Trigger: GATGGGCCCATGCCAACCCCACGACAAAAGCCCTTC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTAATTGTTCCTCCATTTaGCCTTTCTCTGTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: CGSKGTRACACLGKPSTTNCSSI*PFSVEV
Trigger: GACTTCAACAGAGAAAGGCCAAATGGAGGAACAATT...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGGTAGGATTTCCGTGTaGGAGGAAGAGGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMGRISV*EEEGHH
Trigger: ATGGTGACCCTCTTCCTCTCACACGGAAATCCTACC...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACGGTAGGATTTCCGTGTaGGAGGAAGAGGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDGRISV*EEEGHH
Trigger: ATGGTGACCCTCTTCCTCTCACACGGAAATCCTACC...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACTCTCACAGATCTCGCTaGCCACACGCTTTCGCTTCT +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDSHRSR*PHAFAS
Trigger: AGAAGCGAAAGCGTGTGGTCAGCGAGATCTGTGAGA...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTCCTGCAGCCAAATACTaGCCACAGGGAGACCAGGTT +
Preference number: 4 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLPAAKY*PQGDQV
Trigger: AACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGG...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCCTGCAGCCAAATACTaGCCACAGGGAGACCAGGTT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVPAAKY*PQGDQV
Trigger: AACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGG...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGCGACTACAAGTGGGATaGCAGGCCAGGCCACAAATT +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMRLQVG*QARPQI
Trigger: AATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCG...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACGACTACAAGTGGGATaGCAGGCCAGGCCACAAATT +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRRLQVG*QARPQI
Trigger: AATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCG...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGTCGTGGGGTTGGCATaGGCCCATCATAAAATGGCC +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVVVGLA*AHHKMA
Trigger: GGCCATTTTATGATGGGCCCATGCCAACCCCACGAC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCGGGTTTACCCATCCTTaGCTGCTCGAGAAAACTGCA +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLGFTHP*LLEKTA
Trigger: TGCAGTTTTCTCGAGCAGCCAAGGATGGGTAAACCC...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTTCGTCTCCCAAGTCATaGTCTGCAGCCAGCATGATG +
Preference number: 4 (lower is better)
Translates to: HFCSWTAEESPQTALTCGSSPKS*SAASMM
Trigger: CATCATGCTGGCTGCAGATCATGACTTGGGAGACGA...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACCACACCATGAATCTGTaGGAGAGATGCAAGGGCGTT +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDHTMNL*ERCKGV
Trigger: AACGCCCTTGCATCTCTCTCACAGATTCATGGTGTG...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTCTCACAGATCTCGCTaGCCACACGCTTTCGCTTCT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVSHRSR*PHAFAS
Trigger: AGAAGCGAAAGCGTGTGGTCAGCGAGATCTGTGAGA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACCTGCAGCCAAATACTaGCCACAGGGAGACCAGGTT +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGPAAKY*PQGDQV
Trigger: AACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCTCCCAAGTCATGATCTaGAGCCAGCATGATGTCATC +
Preference number: 4 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVSQVMI*SQHDVI
Trigger: GATGACATCATGCTGGCTGCAGATCATGACTTGGGA...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGTCGTGGGGTTGGCATaGGCCCATCATAAAATGGCC +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGVVGLA*AHHKMA
Trigger: GGCCATTTTATGATGGGCCCATGCCAACCCCACGAC...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCCTTTTGTCGTGGGGTTaGCATGGGCCCATCATAAAA +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLLLSWG*HGPIIK
Trigger: TTTTATGATGGGCCCATGCCAACCCCACGACAAAAG...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCTGGATAGAGGTGTCATaGAACTCCACGTCTATGGCA +
Preference number: 4 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVWIEVS*NSTSMA
Trigger: TGCCATAGACGTGGAGTTCCATGACACCTCTATCCA...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACTCCGTGTCCTGCCATaGATACCACAGGTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLRVLP*IPQVQE
Trigger: TTCCTGGACCTGTGGTATCCATGGCAGGACACGGAG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCACCAGGTTACTATATTaGGTGTCTGGGAGATGGAAC +
Preference number: 4 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVTRLLY*VSGRWN
Trigger: GTTCCATCTCCCAGACACTCAATATAGTAACCTGGT...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCTCGTCTCCCAAGTCATaGTCTGCAGCCAGCATGATG +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSSSPKS*SAASMM
Trigger: CATCATGCTGGCTGCAGATCATGACTTGGGAGACGA...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCTCCCCTTCCTCTTTGTaGGAAAGATCAGCTTTTAGC +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLSPSSL*ERSAFS
Trigger: GCTAAAAGCTGATCTTTCTCACAAAGAGGAAGGGGA...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTCATCCACTCTTTGCTTaGGTCCCAAGAACTGAAGTG +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVHPLFA*VPRTEV
Trigger: CACTTCAGTTCTTGGGACTCAAGCAAAGAGTGGATG...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCTCAGCATCTTCAACTTaGCTTCTGACCCGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSSASST*LLTRGR
Trigger: TCGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGA...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGCTGTTCTCCGTGTCCTaGCATGGATACCACAGGTCC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMLFSVS*HGYHRS
Trigger: GGACCTGTGGTATCCATGGCAGGACACGGAGAACAG...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCGGAAGAGGGTCACCATaGAAAACCTGGTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVGRGSP*KTWFFF
Trigger: GAAGAAAAACCAGGTTTTGCATGGTGACCCTCTTCC...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGGGATGCACCTTAGCTaGTGGGGATTCTCATGGATA +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVGMHLS*WGFSWI
Trigger: TATCCATGAGAATCCCCAGCAGCTAAGGTGCATCCC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACATAGGATGCTGCAGATaGCTGCTTAGACCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDIGCCR*LLRPWL
Trigger: AAGCCAAGGTCTAAGCAGGCATCTGCAGCATCCTAT...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAATAGGATGCTGCAGATaGCTGCTTAGACCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRIGCCR*LLRPWL
Trigger: AAGCCAAGGTCTAAGCAGGCATCTGCAGCATCCTAT...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTATATCCGACTACAAGTaGGATGCCAGGCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSISDYK*DARPGH
Trigger: GTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATAT...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTCTTTTGTCGTGGGGTTaGCATGGGCCCATCATAAAA +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVLLSWG*HGPIIK
Trigger: TTTTATGATGGGCCCATGCCAACCCCACGACAAAAG...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACATGCACCTTAGCTGCTaGGGATTCTCATGGATACCA +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDMHLSC*GFSWIP
Trigger: TGGTATCCATGAGAATCCCCAGCAGCTAAGGTGCAT...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTGTTGCCGGCCCCATTaGAGACCACATGGTTTGCAT +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSCCRPH*RPHGLH
Trigger: ATGCAAACCATGTGGTCTTCAATGGGGCCGGCAACA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACTGACAGCACAGGTCTaGTCAGATATATTCCATACC +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRLTAQV*SDIFHT
Trigger: GGTATGGAATATATCTGATCAGACCTGTGCTGTCAG...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACACACACCATGAATCTGTaGGAGAGATGCAAGGGCGTT +
Preference number: 4 (lower is better)
Translates to: KDVQNPREAEARSHYFLTHTMNL*ERCKGV
Trigger: AACGCCCTTGCATCTCTCTCACAGATTCATGGTGTG...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGTTGAGTCCCAAGAACTaGAGTGCAAGCAATGAAGCT +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMLSPKN*SASNEA
Trigger: AGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAA...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCTATGTCTGTTTCATCTaGAATGTCAGGGTTGTCGGA +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLYVCFI*NVRVVG
Trigger: TCCGACAACCCTGACATTTCAGATGAAACAGACATA...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCGGTCAGATTTTCCTTTaGAGTGCTCTCTTATGTTGC +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLGQIFL*SALLCC
Trigger: GCAACATAAGAGAGCACTGCAAAGGAAAATCTGACC...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCTTCATTAAGAGTTCCTaGTGCTCTTTTACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLFIKSS*CSFTAW
Trigger: CCAGGCAGTAAAAGAGCAGCAGGAACTCTTAATGAA...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCTTCTCTTCTTCTGACTaGGTTTCTGCCAATTCAGCT +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLFSSSD*VSANSA
Trigger: AGCTGAATTGGCAGAAACCCAGTCAGAAGAAGAGAA...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGGTTTACCCATCCTTaGCTGCTCGAGAAAACTGCA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGGFTHP*LLEKTA
Trigger: TGCAGTTTTCTCGAGCAGCCAAGGATGGGTAAACCC...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTCGACACCTTTCCACTaGGGTCACAAACATTTTCCA +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVSTPFH*GHKHFP
Trigger: TGGAAAATGTTTGTGACCTCAGTGGAAAGGTGTCGA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCCATTGTAACATCAACTaGGTTTTCATCGTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: SEGPEFKSQQPHGGSQPSHCNIN*VFIVSQ
Trigger: TTGGGAGACGATGAAAACTCAGTTGATGTTACAATG...GGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp CTATTCTTACAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCACACCATGAATCTGTaGGAGAGATGCAAGGGCGTT +
Preference number: 4 (lower is better)
Translates to: LFLQDYSLVSRTHRGGSQHTMNL*ERCKGV
Trigger: AACGCCCTTGCATCTCTCTCACAGATTCATGGTGTG...CTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTGTAAGAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTGAGTCCCAAGAACTaGAGTGCAAGCAATGAAGCT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVLSPKN*SASNEA
Trigger: AGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGCAGAAGACTTCTTTCTaGACACCTCCAATAGTGAAC +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMQKTSF*TPPIVN
Trigger: GTTCACTATTGGAGGTGTTCAGAAAGAAGTCTTCTG...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTGGCCTTTCTCTGTTaGAGTCTGACAGTAAGGAAG +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVLAFLC*SLTVRK
Trigger: CTTCCTTACTGTCAGACTTCAACAGAGAAAGGCCAA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCCTGCCCATGGTTATGTaGCTCTGGTTTCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSLPMVM*LWFLFR
Trigger: TCTGAAGAGAAACCAGAGTCACATAACCATGGGCAG...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACTGCCCATGGTTATGTaGCTCTGGTTTCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLPMVM*LWFLFR
Trigger: TCTGAAGAGAAACCAGAGTCACATAACCATGGGCAG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGTCACATCACCATCACTaGCACAAGTCACAATATAGC +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMSHHHH*HKSQYS
Trigger: GCTATATTGTGACTTGTGGCAGTGATGGTGATGTGA...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGATCACATCACCATCACTaGCACAAGTCACAATATAGC +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRSHHHH*HKSQYS
Trigger: GCTATATTGTGACTTGTGGCAGTGATGGTGATGTGA...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGAAGACCACATGGTTTaGATTTGTAGTGAAGCGTGT +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMEDHMV*ICSEAC
Trigger: ACACGCTTCACTACAAATGCAAACCATGTGGTCTTC...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAGAAGACCACATGGTTTaGATTTGTAGTGAAGCGTGT +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHREDHMV*ICSEAC
Trigger: ACACGCTTCACTACAAATGCAAACCATGTGGTCTTC...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTCCTCGAAATGTTTGCTaGTGGCTGTTATCCATCACA +
Preference number: 4 (lower is better)
Translates to: HFCSWTAEESPQTALTCGPRNVC*WLLSIT
Trigger: TGTGATGGATAACAGCCAGCAGCAAACATTTCGAGG...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTTGTCCTCGAAATGTTTaGTGCTGGCTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: HFCSWTAEESPQTALTCGCPRNV*CWLLSI
Trigger: GATGGATAACAGCCAGCAGCAAACATTTCGAGGACA...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACATCCCAAGTCATGATCTaGAGCCAGCATGATGTCATC +
Preference number: 4 (lower is better)
Translates to: KDVQNPREAEARSHYFLTSQVMI*SQHDVI
Trigger: GATGACATCATGCTGGCTGCAGATCATGACTTGGGA...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCCTCTATGATAAACAATaGAAAGCTGTTCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLLYDKQ*KAVLRV
Trigger: GACACGGAGAACAGCTTTGCATTGTTTATCATAGAG...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACGGTCAGATTTTCCTTTaGAGTGCTCTCTTATGTTGC +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDGQIFL*SALLCC
Trigger: GCAACATAAGAGAGCACTGCAAAGGAAAATCTGACC...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCTGCCAATTCAGCTaGCTTTTCTGCAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVFCQFS*LFCSKF
Trigger: GAACTTGCTGCAGAAAAGGCAGCTGAATTGGCAGAA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACACTGGAAATAGGATGCTaGAGATGCCTGCTTAGACCT +
Preference number: 4 (lower is better)
Translates to: KDVQNPREAEARSHYFLTLEIGC*RCLLRP
Trigger: AGGTCTAAGCAGGCATCTGCAGCATCCTATTTCCAG...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACTGGAAATAGGATGCTaGAGATGCCTGCTTAGACCT +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLEIGC*RCLLRP
Trigger: AGGTCTAAGCAGGCATCTGCAGCATCCTATTTCCAG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTCGAAATGTTTGCTGCTaGCTGTTATCCATCACATCC +
Preference number: 4 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLRNVCC*LLSITS
Trigger: GGATGTGATGGATAACAGCCAGCAGCAAACATTTCG...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTGGGCCCATCATAAAATaGCCTTTGGGGTCTTATAAG +
Preference number: 4 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLGPIIK*PLGSYK
Trigger: CTTATAAGACCCCAAAGGCCATTTTATGATGGGCCC...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCTGGATAGAGGTGTCATaGAACTCCACGTCTATGGCA +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSWIEVS*NSTSMA
Trigger: TGCCATAGACGTGGAGTTCCATGACACCTCTATCCA...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACTGGAACCCAGTCTTTaGCCTTTGGTTTTCCGAGTT +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLEPSL*PLVFRV
Trigger: AACTCGGAAAACCAAAGGCCAAAGACTGGGTTCCAG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACGGAGATGGAACTATCTaGAAGATCGAATGGATTACT +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDGDGTI*KIEWIT
Trigger: AGTAATCCATTCGATCTTTCAGATAGTTCCATCTCC...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAACCAGGTTACTATATTaGGTGTCTGGGAGATGGAAC +
Preference number: 4 (lower is better)
Translates to: KDVQNPREAEARSHYFLTTRLLY*VSGRWN
Trigger: GTTCCATCTCCCAGACACTCAATATAGTAACCTGGT...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGATCCCCTTCCTCTTTGTaGGAAAGATCAGCTTTTAGC +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGSPSSL*ERSAFS
Trigger: GCTAAAAGCTGATCTTTCTCACAAAGAGGAAGGGGA...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTCATCCACTCTTTGCTTaGGTCCCAAGAACTGAAGTG +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSHPLFA*VPRTEV
Trigger: CACTTCAGTTCTTGGGACTCAAGCAAAGAGTGGATG...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGATTGGCCTTTCTCTGTTaGAGTCTGACAGTAAGGAAG +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLAFLC*SLTVRK
Trigger: CTTCCTTACTGTCAGACTTCAACAGAGAAAGGCCAA...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAAAATGCACGGCATTTTaGGTCATTAGATCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRKCTAF*VIRSAS
Trigger: ACTTGCTGATCTAATGACTCAAAATGCCGTGCATTT...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGGCCAGGCCACAAATTaGATAACCTTTCTCATGTTT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVGQATN*ITFLMF
Trigger: AAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTCCCAAGTCATGATCTaGAGCCAGCATGATGTCATC +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSSQVMI*SQHDVI
Trigger: GATGACATCATGCTGGCTGCAGATCATGACTTGGGA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTCTCTATGATAAACAATaGAAAGCTGTTCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVLYDKQ*KAVLRV
Trigger: GACACGGAGAACAGCTTTGCATTGTTTATCATAGAG...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCTGCTGCTCTTTTACTaGCTGGTTTTTAATGCTCTC +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVLLLFY*LVFNAL
Trigger: GAGAGCATTAAAAACCAGGCAGTAAAAGAGCAGCAG...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCATTAAGAGTTCCTaGTGCTCTTTTACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVFIKSS*CSFTAW
Trigger: CCAGGCAGTAAAAGAGCAGCAGGAACTCTTAATGAA...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCTTCTGCCAATTCAGCTaGCTTTTCTGCAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSFCQFS*LFCSKF
Trigger: GAACTTGCTGCAGAAAAGGCAGCTGAATTGGCAGAA...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCGGGCCCATCATAAAATaGCCTTTGGGGTCTTATAAG +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSGPIIK*PLGSYK
Trigger: CTTATAAGACCCCAAAGGCCATTTTATGATGGGCCC...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTCTTTTGTCGTGGGGTTaGCATGGGCCCATCATAAAA +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSLLSWG*HGPIIK
Trigger: TTTTATGATGGGCCCATGCCAACCCCACGACAAAAG...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTGGATAGAGGTGTCATaGAACTCCACGTCTATGGCA +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSWIEVS*NSTSMA
Trigger: TGCCATAGACGTGGAGTTCCATGACACCTCTATCCA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTATGCACCTTAGCTGCTaGGGATTCTCATGGATACCA +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSMHLSC*GFSWIP
Trigger: TGGTATCCATGAGAATCCCCAGCAGCTAAGGTGCAT...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACCAGAAAATCACTTaGCCCAGCAGCAATTTTGTT +
Preference number: 4 (lower is better)
Translates to: KDVQNPREAEARSHYFLTDQKIT*PSSNFV
Trigger: AACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTC...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGCTGACAGCACAGGTCTaGTCAGATATATTCCATACC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMLTAQV*SDIFHT
Trigger: GGTATGGAATATATCTGATCAGACCTGTGCTGTCAG...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CTATTCTTACAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGTCGACACCTTTCCACTaGGGTCACAAACATTTTCCA +
Preference number: 4 (lower is better)
Translates to: LFLQDYSLVSRTHRGGSQSTPFH*GHKHFP
Trigger: TGGAAAATGTTTGTGACCTCAGTGGAAAGGTGTCGA...CTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTGTAAGAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTCATTGTAACATCAACTaGGTTTTCATCGTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: HFCSWTAEESPQTALTCGHCNIN*VFIVSQ
Trigger: TTGGGAGACGATGAAAACTCAGTTGATGTTACAATG...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTTGAGTCCCAAGAACTaGAGTGCAAGCAATGAAGCT +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMLSPKN*SASNEA
Trigger: AGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGATATGTCTGTTTCATCTaGAATGTCAGGGTTGTCGGA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGYVCFI*NVRVVG
Trigger: TCCGACAACCCTGACATTTCAGATGAAACAGACATA...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTGTCCTCGAAATGTTTaGTGCTGGCTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMCPRNV*CWLLSI
Trigger: GATGGATAACAGCCAGCAGCAAACATTTCGAGGACA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAATCAGCACTTTCACATaGCAACAAAATAGCTTCATG +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRISTFT*QQNSFM
Trigger: CATGAAGCTATTTTGTTGGCATGTGAAAGTGCTGAT...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGGAAGAGGGTCACCATaGAAAACCTGGTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSGRGSP*KTWFFF
Trigger: GAAGAAAAACCAGGTTTTGCATGGTGACCCTCTTCC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGGGAAGAGGGTCACCATaGAAAACCTGGTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMGRGSP*KTWFFF
Trigger: GAAGAAAAACCAGGTTTTGCATGGTGACCCTCTTCC...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGATTAAGAGTTCCTGCTaGTCTTTTACTGCCTGGTTT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVIKSSC*SFTAWF
Trigger: AAACCAGGCAGTAAAAGAGCAGCAGGAACTCTTAAT...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGATTTCTGGAAATAGGATaGTGCAGATGCCTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGFLEIG*CRCLLR
Trigger: TCTAAGCAGGCATCTGCAGCATCCTATTTCCAGAAA...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGACTATATTGAGTGTCTaGGAGATGGAACTATCTGAA +
Preference number: 4 (lower is better)
Translates to: RASTALLKVLSSSPSNHMTILSV*EMELSE
Trigger: TTCAGATAGTTCCATCTCCCAGACACTCAATATAGT...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACACTATATTGAGTGTCTaGGAGATGGAACTATCTGAA +
Preference number: 4 (lower is better)
Translates to: SWTAEESPQTALTCGVPDTILSV*EMELSE
Trigger: TTCAGATAGTTCCATCTCCCAGACACTCAATATAGT...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCCACCTGTTTTTCCATGCAGTCTTTaGTTTCCACATTCCAAACTA +
Preference number: 4 (lower is better)
Translates to: QDYSLVSRTHRGGSQPPVFPCSL*FPHSKL
Trigger: TAGTTTGGAATGTGGAAACCAAAGACTGCATGGAAA...AACAGGTGGCTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGATTTCCATGCAGTCTTTaGTTTCCACATTCCAAACTA +
Preference number: 4 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRFPCSL*FPHSKL
Trigger: TAGTTTGGAATGTGGAAACCAAAGACTGCATGGAAA...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGAGGAATTGGCACTTTaGAATAAGTTCTGCCCATGG +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSEELAL*NKFCPW
Trigger: CCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATTCAGACTGGCCACATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCCTGACAGCACAGGTCTaGTCAGATATATTCCATACC +
Preference number: 4 (lower is better)
Translates to: IQTGHISSVQEPATHKLSLTAQV*SDIFHT
Trigger: GGTATGGAATATATCTGATCAGACCTGTGCTGTCAG...GCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAATGTGGCCAGTCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCGGAGATGGAACTATCTaGAAGATCGAATGGATTACT +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSGDGTI*KIEWIT
Trigger: AGTAATCCATTCGATCTTTCAGATAGTTCCATCTCC...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACATCCCCTTCCTCTTTGTaGGAAAGATCAGCTTTTAGC +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTSPSSL*ERSAFS
Trigger: GCTAAAAGCTGATCTTTCTCACAAAGAGGAAGGGGA...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTAATAGATGTGTTGCATaGTGGATAGAGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSNRCVA*WIEVSW
Trigger: CCATGACACCTCTATCCATCATGCAACACATCTATT...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTTCTTTCTCTTCTTCTaGCTGGGTTTCTGCCAATTC +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSFFLFF*LGFCQF
Trigger: GAATTGGCAGAAACCCAGTCAGAAGAAGAGAAAGAA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTCACATCACCATCACTaGCACAAGTCACAATATAGC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMSHHHH*HKSQYS
Trigger: GCTATATTGTGACTTGTGGCAGTGATGGTGATGTGA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACACCTCGAAATGTTTGCTaGTGGCTGTTATCCATCACA +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTPRNVC*WLLSIT
Trigger: TGTGATGGATAACAGCCAGCAGCAAACATTTCGAGG...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATTCAGACTGGCCACATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCTGTCCTCGAAATGTTTaGTGCTGGCTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: IQTGHISSVQEPATHKLSCPRNV*CWLLSI
Trigger: GATGGATAACAGCCAGCAGCAAACATTTCGAGGACA...GCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAATGTGGCCAGTCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGTTTTACCCTTTCCATaGAGTCTTTGGTTTCCACAT +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGVLPFP*SLWFPH
Trigger: ATGTGGAAACCAAAGACTGCATGGAAAGGGTAAAAC...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGGCCAGGCCACAAATTaGATAACCTTTCTCATGTTT +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSGQATN*ITFLMF
Trigger: AAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAATTAAGAGTTCCTGCTaGTCTTTTACTGCCTGGTTT +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGIKSSC*SFTAWF
Trigger: AAACCAGGCAGTAAAAGAGCAGCAGGAACTCTTAAT...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTAACAAAATAGCTTCATaGGAAAGAGTTCCCATTGTG +
Preference number: 4 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLNKIAS*ERVPIV
Trigger: CACAATGGGAACTCTTTCCCATGAAGCTATTTTGTT...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGAACAAAATAGCTTCATaGGAAAGAGTTCCCATTGTG +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVNKIAS*ERVPIV
Trigger: CACAATGGGAACTCTTTCCCATGAAGCTATTTTGTT...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGTGTATCAGAGGAATTaGCACTTTGGAATAAGTTCT +
Preference number: 4 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVVYQRN*HFGISS
Trigger: AGAACTTATTCCAAAGTGCCAATTCCTCTGATACAC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTAGTCTTATCAGCCTGTaGAGTTCTTTTCTGGAAATA +
Preference number: 4 (lower is better)
Translates to: HFCSWTAEESPQTALTCGSLISL*SSFLEI
Trigger: TATTTCCAGAAAAGAACTCCACAGGCTGATAAGACT...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGTGTTGCCGGCCCCATTaGAGACCACATGGTTTGCAT +
Preference number: 4 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMCCRPH*RPHGLH
Trigger: ATGCAAACCATGTGGTCTTCAATGGGGCCGGCAACA...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACAGACCAGAAAATCACTTaGCCCAGCAGCAATTTTGTT +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTDQKIT*PSSNFV
Trigger: AACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTC...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGGTTTTACCCTTTCCATaGAGTCTTTGGTTTCCACAT +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMVLPFP*SLWFPH
Trigger: ATGTGGAAACCAAAGACTGCATGGAAAGGGTAAAAC...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGAATTGTTCCTCCATTTaGCCTTTCTCTGTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMNCSSI*PFSVEV
Trigger: GACTTCAACAGAGAAAGGCCAAATGGAGGAACAATT...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCGTGTATCAGAGGAATTaGCACTTTGGAATAAGTTCT +
Preference number: 4 (lower is better)
Translates to: NPREAEARSHYFLTDNPSVYQRN*HFGISS
Trigger: AGAACTTATTCCAAAGTGCCAATTCCTCTGATACAC...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAAGTCTTATCAGCCTGTaGAGTTCTTTTCTGGAAATA +
Preference number: 4 (lower is better)
Translates to: MTMALLLQNLNKGGKALGSLISL*SSFLEI
Trigger: TATTTCCAGAAAAGAACTCCACAGGCTGATAAGACT...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR TCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACAGGAGATGGAACTATCTaGAAGATCGAATGGATTACT +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTGDGTI*KIEWIT
Trigger: AGTAATCCATTCGATCTTTCAGATAGTTCCATCTCC...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACAGTTTTACCCTTTCCATaGAGTCTTTGGTTTCCACAT +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTVLPFP*SLWFPH
Trigger: ATGTGGAAACCAAAGACTGCATGGAAAGGGTAAAAC...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CCA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTTTCCATGCAGTCTTTaGTTTCCACATTCCAAACTA +
Preference number: 4 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSFPCSL*FPHSKL
Trigger: TAGTTTGGAATGTGGAAACCAAAGACTGCATGGAAA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGAACAAAATAGCTTCATaGGAAAGAGTTCCCATTGTG +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMNKIAS*ERVPIV
Trigger: CACAATGGGAACTCTTTCCCATGAAGCTATTTTGTT...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CCA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGAACGCTGACAATTTCTaGTTAGCAGGAAGATTTAAC +
Preference number: 4 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMNADNF*LAGRFN
Trigger: GTTAAATCTTCCTGCTAACCAGAAATTGTCAGCGTT...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR GCA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACAATCAGCACTTTCACATaGCAACAAAATAGCTTCATG +
Preference number: 4 (lower is better)
Translates to: FSRAGELAQWLGALAILTISTFT*QQNSFM
Trigger: CATGAAGCTATTTTGTTGGCATGTGAAAGTGCTGAT...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR TCA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGAATAGATGTGTTGCATaGTGGATAGAGGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMNRCVA*WIEVSW
Trigger: CCATGACACCTCTATCCATCATGCAACACATCTATT...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR GCA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGGGCCAGGCCACAAATTaGATAACCTTTCTCATGTTT +
Preference number: 4 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMGQATN*ITFLMF
Trigger: AAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCC...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCTCAGCATCTTCAACTaGACTTCTGACCCGTGGCCG +
Preference number: 5 (lower is better)
Translates to: RACACLGKPSTTELHTQPLSIFN*TSDPWP
Trigger: CGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGAG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCACGCTTTCGCTTCTTaGCTTCAGCTCCATCGCTGG +
Preference number: 5 (lower is better)
Translates to: RACACLGKPSTTELHTQPHAFAS*LQLHRW
Trigger: CCAGCGATGGAGCTGAAGCAAAGAAGCGAAAGCGTG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCGCGTTCACCACGTCATaGCTCTTTTGCAGTACTGGC +
Preference number: 5 (lower is better)
Translates to: RACACLGKPSTTELHTQPAFTTS*LFCSTG
Trigger: GCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGC...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCCTGGCAGTTTCTCCCTaGGCTTTGTTAGTCCATGCC +
Preference number: 5 (lower is better)
Translates to: RACACLGKPSTTELHTQPLAVSP*ALLVHA
Trigger: GGCATGGACTAACAAAGCCAAGGGAGAAACTGCCAG...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGCTTTTGTCGTGGGGTaGGCATGGGCCCATCATAAA +
Preference number: 5 (lower is better)
Translates to: CGSKGTRACACLGKPSTTAFVVG*AWAHHK
Trigger: TTTATGATGGGCCCATGCCAACCCCACGACAAAAGC...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 90 bp CTGCTAGTAACTTCCCGGCCTTGGGCTGCCACGCGAGTCTGCAGATaGACTTGGCGTTCACCACGTCATTGCTCTTTTGCAGTACTGGCC +
Preference number: 5 (lower is better)
Translates to: LLVTSRPWAATRVCR*TWRSPRHCSFAVLA
Trigger: GGCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGGGAAGTTACTAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTGAGCTGCACACCCAGCCCTTTGGCCTTTCTCTGTaGAAGTCTGACAGTAAGGAA +
Preference number: 5 (lower is better)
Translates to: RACACLGKPSTTELHTQPFGLSL*KSDSKE
Trigger: TTCCTTACTGTCAGACTTCAACAGAGAAAGGCCAAA...GGGCTGGGTGTGCAGCTCAGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 90 bp GCGGCCCAGCCTAGACCGAGGCATATGGCTTCGATGTCCTCATTCTaGGGCATATCTACCATCCACTCTTTGCTTGAGTCCCAAGAACTG +
Preference number: 5 (lower is better)
Translates to: AAQPRPRHMASMSSF*GISTIHSLLESQEL
Trigger: CAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGATATGCCCCAGAATGAGGACATCGAAGCCATATGCCTCGGTCTAGGCTGGGCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TGCGGCAGTAAGGGAACCAGGGCCTGCGCATGCTTAGGCAAGCCCTCCACCACTCTTTCCATGCAGTCTTaGGTTTCCACATTCCAAACT +
Preference number: 5 (lower is better)
Translates to: CGSKGTRACACLGKPSTTLSMQS*VSTFQT
Trigger: AGTTTGGAATGTGGAAACCAAAGACTGCATGGAAAG...AGTGGTGGAGGGCTTGCCTAAGCATGCGCAGGCCCTGGTTCCCTTACTGCCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CACAGAGGTGGCTCACAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCTTGTTGCCGGCCCCATaGAAGACCACATGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: HRGGSQPPVNYNPRGSNVLLPAP*KTTWFA
Trigger: TGCAAACCATGTGGTCTTCAATGGGGCCGGCAACAA...GACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTGTGAGCCACCTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACCAGCAGCAATTTTGTaGCCGGCCCCATTGAAGACC +
Preference number: 5 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRPAAIL*PAPLKT
Trigger: GGTCTTCAATGGGGCCGGCAACAAAATTGCTGCTGG...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACCTCAGCATCTTCAACTaGACTTCTGACCCGTGGCCG +
Preference number: 5 (lower is better)
Translates to: SWTAEESPQTALTCGVPDLSIFN*TSDPWP
Trigger: CGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGAG...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGATTGTTGCCGGCCCCATaGAAGACCACATGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRLLPAP*KTTWFA
Trigger: TGCAAACCATGTGGTCTTCAATGGGGCCGGCAACAA...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCCACGTCATTGCTCTTTaGCAGTACTGGCCAACTGAC +
Preference number: 5 (lower is better)
Translates to: SEGPEFKSQQPHGGSQPSHVIAL*QYWPTD
Trigger: GTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGTG...GGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCACGCTTTCGCTTCTTaGCTTCAGCTCCATCGCTGG +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVHAFAS*LQLHRW
Trigger: CCAGCGATGGAGCTGAAGCAAAGAAGCGAAAGCGTG...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp GTTCTCTGTCTCACAGATCTCGCTGACCACACGCTTTCGCTTCTTTaGTTCAGCTCCATCGCTGGCAGTTTCTCCCTTGGCTTTGTTAGT +
Preference number: 5 (lower is better)
Translates to: VLCLTDLADHTLSLL*FSSIAGSFSLGFVS
Trigger: ACTAACAAAGCCAAGGGAGAAACTGCCAGCGATGGAGCTGAAGCAAAGAAGCGAAAGCGTGTGGTCAGCGAGATCTGTGAGACAGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACACGTCATTGCTCTTTaGCAGTACTGGCCAACTGAC +
Preference number: 5 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRHVIAL*QYWPTD
Trigger: GTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGTG...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTGCTTTTGTCGTGGGGTaGGCATGGGCCCATCATAAA +
Preference number: 5 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLAFVVG*AWAHHK
Trigger: TTTATGATGGGCCCATGCCAACCCCACGACAAAAGC...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CAGCCACCTGTTAACTACAACCCTAGGGGATCCAATGTCCTCTTCTGGACTCTTGCAAGGGCGTTGAACTaGACTGGAAGGGCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: QPPVNYNPRGSNVLFWTLARALN*TGRAFV
Trigger: GACAAAAGCCCTTCCAGTCAAGTTCAACGCCCTTGC...AAGAGTCCAGAAGAGGACATTGGATCCCCTAGGGTTGTAGTTAACAGGTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCAAGGGCGTTGAACTaGACTGGAAGGGCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: HFCSWTAEESPQTALTCGARALN*TGRAFV
Trigger: GACAAAAGCCCTTCCAGTCAAGTTCAACGCCCTTGC...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGAGCATCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTCTATGGCACTGTCTaGATCGTCGTTATAGCAGCG +
Preference number: 5 (lower is better)
Translates to: RASTALLKVLSSSPSNHMVYGTV*IVVIAA
Trigger: CGCTGCTATAACGACGATCAAGACAGTGCCATAGAC...CATGTGGTTGCTGGGACTTGAACTCAGGACCTTCAGAAGAGCAGTCGATGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCGTTTCTCCCTTGGCTTaGTTAGTCCATGCCTTCCTT +
Preference number: 5 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLVSPLA*LVHAFL
Trigger: AAGGAAGGCATGGACTAACAAAGCCAAGGGAGAAAC...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGATTGTTGCCGGCCCCATaGAAGACCACATGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: MTMALLLQNLNKGGKALGLLPAP*KTTWFA
Trigger: TGCAAACCATGTGGTCTTCAATGGGGCCGGCAACAA...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCGCGTTCACCACGTCATaGCTCTTTTGCAGTACTGGC +
Preference number: 5 (lower is better)
Translates to: NPREAEARSHYFLTDNPSAFTTS*LFCSTG
Trigger: GCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGC...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCGACCAGGTTACTATATaGAGTGTCTGGGAGATGGAA +
Preference number: 5 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLDQVTI*SVWEME
Trigger: TTCCATCTCCCAGACACTCAATATAGTAACCTGGTC...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGCTTTTGTCGTGGGGTaGGCATGGGCCCATCATAAA +
Preference number: 5 (lower is better)
Translates to: KDVQNPREAEARSHYFLTAFVVG*AWAHHK
Trigger: TTTATGATGGGCCCATGCCAACCCCACGACAAAAGC...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCGCAAGGGCGTTGAACTaGACTGGAAGGGCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: NPREAEARSHYFLTDNPSARALN*TGRAFV
Trigger: GACAAAAGCCCTTCCAGTCAAGTTCAACGCCCTTGC...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGTCTATGGCACTGTCTaGATCGTCGTTATAGCAGCG +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVVYGTV*IVVIAA
Trigger: CGCTGCTATAACGACGATCAAGACAGTGCCATAGAC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp CCCTGTACCTCTATGATAAACAATGCAAAGCTGTTCTCCGTGTCCTaGCATGGATACCACAGGTCCAGGAAGGCAGAAGACTTCTTTCTG +
Preference number: 5 (lower is better)
Translates to: PCTSMINNAKLFSVS*HGYHRSRKAEDFFL
Trigger: CAGAAAGAAGTCTTCTGCCTTCCTGGACCTGTGGTATCCATGGCAGGACACGGAGAACAGCTTTGCATTGTTTATCATAGAGGTACAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp TTCCTCAGTCTTATCAGCCTGTGGAGTTCTTTTCTGGAAATAGGATaGTGCAGATGCCTGCTTAGACCTTGGCTTGGGAGTGAGAGGCTT +
Preference number: 5 (lower is better)
Translates to: FLSLISLWSSFLEIG*CRCLLRPWLGSERL
Trigger: AAGCCTCTCACTCCCAAGCCAAGGTCTAAGCAGGCATCTGCAGCATCCTATTTCCAGAAAAGAACTCCACAGGCTGATAAGACTGAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACATGTCCTCGAAATGTTaGCTGCTGGCTGTTATCCAT +
Preference number: 5 (lower is better)
Translates to: SWTAEESPQTALTCGVPDMSSKC*LLAVIH
Trigger: ATGGATAACAGCCAGCAGCAAACATTTCGAGGACAT...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACACGTCATTGCTCTTTaGCAGTACTGGCCAACTGAC +
Preference number: 5 (lower is better)
Translates to: MTMALLLQNLNKGGKALGHVIAL*QYWPTD
Trigger: GTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGTG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGTTCCTGACGACCAGGTTACTATATaGAGTGTCTGGGAGATGGAA +
Preference number: 5 (lower is better)
Translates to: SWTAEESPQTALTCGVPDDQVTI*SVWEME
Trigger: TTCCATCTCCCAGACACTCAATATAGTAACCTGGTC...GTCAGGAACACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAAGGCCAGGCCACAAATaGCATAACCTTTCTCATGTT +
Preference number: 5 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRRPGHK*HNLSHV
Trigger: AACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCT...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CACGGAGACAGAATGGTGTCCCTGGTAGTCACTGCCATCATGGCATTTCTGCTCAACCGAATGCCAAAATaGTTCCTCCATTTGGCCTTT +
Preference number: 5 (lower is better)
Translates to: HGDRMVSLVVTAIMAFLLNRMPK*FLHLAF
Trigger: AAAGGCCAAATGGAGGAACAATTTTGGCATTCGGTT...GAGCAGAAATGCCATGATGGCAGTGACTACCAGGGACACCATTCTGTCTCCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGAACTGACTACTACCTaGAAGGGGTTTACCCATCCT +
Preference number: 5 (lower is better)
Translates to: HFCSWTAEESPQTALTCGELTTT*KGFTHP
Trigger: AGGATGGGTAAACCCCTTCAAGGTAGTAGTCAGTTC...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCCCAGTCTTTGGCCTTaGGTTTTCCGAGTTTTGAAG +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVPSLWP*VFRVLK
Trigger: CTTCAAAACTCGGAAAACCAAAGGCCAAAGACTGGG...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGCTGGCAGTTTCTCCCTaGGCTTTGTTAGTCCATGCC +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMLAVSP*ALLVHA
Trigger: GGCATGGACTAACAAAGCCAAGGGAGAAACTGCCAG...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp CTCGAAATGTTTGCTGCTGGCTGTTATCCATCACATCCACAACTTTaGCCAGAAAATCACTTGACCCAGCAGCAATTTTGTTGCCGGCCC +
Preference number: 5 (lower is better)
Translates to: LEMFAAGCYPSHPQL*PENHLTQQQFCCRP
Trigger: GGGCCGGCAACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAACATTTCGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGATGTCCTCGAAATGTTaGCTGCTGGCTGTTATCCAT +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVMSSKC*LLAVIH
Trigger: ATGGATAACAGCCAGCAGCAAACATTTCGAGGACAT...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTCAGACTGGCCACATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCGCGTTCACCACGTCATaGCTCTTTTGCAGTACTGGC +
Preference number: 5 (lower is better)
Translates to: IQTGHISSVQEPATHKLSAFTTS*LFCSTG
Trigger: GCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGC...GCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAATGTGGCCAGTCTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGTCTATGGCACTGTCTaGATCGTCGTTATAGCAGCG +
Preference number: 5 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSVYGTV*IVVIAA
Trigger: CGCTGCTATAACGACGATCAAGACAGTGCCATAGAC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGACAATCCTTCCTCTACCATCCACTCTTaGCTTGAGTCCCAAGAACTG +
Preference number: 5 (lower is better)
Translates to: NPREAEARSHYFLTDNPSSTIHS*LESQEL
Trigger: CAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGA...GGAAGGATTGTCTGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGCAGTGCTCTCTTATGTaGCATACAGGAGTCCATGTA +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVQCSLM*HTGVHV
Trigger: TACATGGACTCCTGTATGCAACATAAGAGAGCACTG...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AGTCACTGCCATCATGGCATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGAGGTGTATCAGAGGAATaGGCACTTTGGAATAAGTTC +
Preference number: 5 (lower is better)
Translates to: SHCHHGISAHGQQRNPHRGVSEE*ALWNKF
Trigger: GAACTTATTCCAAAGTGCCAATTCCTCTGATACACC...TCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATGCCATGATGGCAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGAACTGACTACTACCTaGAAGGGGTTTACCCATCCT +
Preference number: 5 (lower is better)
Translates to: KDVQNPREAEARSHYFLTELTTT*KGFTHP
Trigger: AGGATGGGTAAACCCCTTCAAGGTAGTAGTCAGTTC...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATGACCATGGCACTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGACCCAGTCTTTGGCCTTaGGTTTTCCGAGTTTTGAAG +
Preference number: 5 (lower is better)
Translates to: MTMALLLQNLNKGGKALGPSLWP*VFRVLK
Trigger: CTTCAAAACTCGGAAAACCAAAGGCCAAAGACTGGG...TCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAGTGCCATGGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp AAAGACGTCCAGAATCCAAGAGAAGCTGAAGCCAGGTCTCACTACTTCCTGACAGTTTCTCCCTTGGCTTaGTTAGTCCATGCCTTCCTT +
Preference number: 5 (lower is better)
Translates to: KDVQNPREAEARSHYFLTVSPLA*LVHAFL
Trigger: AAGGAAGGCATGGACTAACAAAGCCAAGGGAGAAAC...TGTCAGGAAGTAGTGAGACCTGGCTTCAGCTTCTCTTGGATTCTGGACGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp ACGTCATTGCTCTTTTGCAGTACTGGCCAACTGACAGCACAGGTCTaGTCAGATATATTCCATACCCTGACAGTTCCATCACAACTAGCC +
Preference number: 5 (lower is better)
Translates to: TSLLFCSTGQLTAQV*SDIFHTLTVPSQLA
Trigger: GGCTAGTTGTGATGGAACTGTCAGGGTATGGAATATATCTGATCAGACCTGTGCTGTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp CACCTGCAGCCAAATACTGCCCACAGGGAGACCAGGTTACTATATTaGGTGTCTGGGAGATGGAACTATCTGAAAGATCGAATGGATTAC +
Preference number: 5 (lower is better)
Translates to: HLQPNTAHRETRLLY*VSGRWNYLKDRMDY
Trigger: GTAATCCATTCGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp CCACCCAGTAGTGGTCAGATTTTCCTTTGCAGTGCTCTCTTATGTTaGATACAGGAGTCCATGTATTCCCGAGTCCTCTGTTTAGCATTC +
Preference number: 5 (lower is better)
Translates to: PPSSGQIFLCSALLC*IQESMYSRVLCLAF
Trigger: GAATGCTAAACAGAGGACTCGGGAATACATGGACTCCTGTATGCAACATAAGAGAGCACTGCAAAGGAAAATCTGACCACTACTGGGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
ENSMUST00000227041.2
CDS CCA 90 bp TACCTCTATGATAAACAATGCAAAGCTGTTCTCCGTGTCCTGCCATaGATACCACAGGTCCAGGAAGGCAGAAGACTTCTTTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: YLYDKQCKAVLRVLP*IPQVQEGRRLLSEH
Trigger: GTGTTCAGAAAGAAGTCTTCTGCCTTCCTGGACCTGTGGTATCCATGGCAGGACACGGAGAACAGCTTTGCATTGTTTATCATAGAGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTCTTTCCATGCAGTCTTaGGTTTCCACATTCCAAACT +
Preference number: 5 (lower is better)
Translates to: HFCSWTAEESPQTALTCGLSMQS*VSTFQT
Trigger: AGTTTGGAATGTGGAAACCAAAGACTGCATGGAAAG...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CTATTCTTACAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGGGGATCTCAACCGCATaGTCGTTTAGAAAATCGCCA +
Preference number: 5 (lower is better)
Translates to: LFLQDYSLVSRTHRGGSQGISTA*SFRKSP
Trigger: TGGCGATTTTCTAAACGACAATGCGGTTGAGATCCC...CTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTGTAAGAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTGGGATCTCAACCGCATaGTCGTTTAGAAAATCGCCA +
Preference number: 5 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSGISTA*SFRKSP
Trigger: TGGCGATTTTCTAAACGACAATGCGGTTGAGATCCC...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTCTACCATCCACTCTTaGCTTGAGTCCCAAGAACTG +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMSTIHS*LESQEL
Trigger: CAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTTGGTCAGATTTTCCTTaGCAGTGCTCTCTTATGTTG +
Preference number: 5 (lower is better)
Translates to: HFCSWTAEESPQTALTCGWSDFP*QCSLML
Trigger: CAACATAAGAGAGCACTGCAAAGGAAAATCTGACCA...ACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGGGTGTATCAGAGGAATaGGCACTTTGGAATAAGTTC +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVGVSEE*ALWNKF
Trigger: GAACTTATTCCAAAGTGCCAATTCCTCTGATACACC...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp GATTCTCATGGATACCAACCACCCAGTAGTGGTCAGATTTTCCTTTaGAGTGCTCTCTTATGTTGCATACAGGAGTCCATGTATTCCCGA +
Preference number: 5 (lower is better)
Translates to: DSHGYQPPSSGQIFL*SALLCCIQESMYSR
Trigger: TCGGGAATACATGGACTCCTGTATGCAACATAAGAGAGCACTGCAAAGGAAAATCTGACCACTACTGGGTGGTTGGTATCCATGAGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
ENSMUST00000227041.2
CDS CCA 90 bp GCCAAATACTGCCCACAGGGAGACCAGGTTACTATATTGAGTGTCTaGGAGATGGAACTATCTGAAAGATCGAATGGATTACTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: AKYCPQGDQVTILSV*EMELSERSNGLLQV
Trigger: AACCTGGAGTAATCCATTCGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 90 bp CTCCAAGGTTTCCTTCCACATCAGTATAACATATCCGACTACAAGTaGGATGCCAGGCCAGGCCACAAATTGCATAACCTTTCTCATGTT +
Preference number: 5 (lower is better)
Translates to: LQGFLPHQYNISDYK*DARPGHKLHNLSHV
Trigger: AACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATATGTTATACTGATGTGGAAGGAAACCTTGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp TTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTGATGACCAGGTTACTATATaGAGTGTCTGGGAGATGGAA +
Preference number: 5 (lower is better)
Translates to: FKSQQPHGGSQPSVMKSDDQVTI*SVWEME
Trigger: TTCCATCTCCCAGACACTCAATATAGTAACCTGGTC...ATCAGATTTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp TTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTGATAGGCCAGGCCACAAATaGCATAACCTTTCTCATGTT +
Preference number: 5 (lower is better)
Translates to: FKSQQPHGGSQPSVMKSDRPGHK*HNLSHV
Trigger: AACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCT...ATCAGATTTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGAGGCCAGGCCACAAATaGCATAACCTTTCTCATGTT +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMRPGHK*HNLSHV
Trigger: AACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCT...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTCTACTAGATACCTTATaGCTCGACACCTTTCCACTG +
Preference number: 5 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSLLDTL*LDTFPL
Trigger: CAGTGGAAAGGTGTCGAGCAATAAGGTATCTAGTAG...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCTGCTCATGGACAGCAGAGGAATCCCCACAGACAGCTCTTACATGTGGTGAATCGCCAGCACTACTaGTATCATCTCCATCAAAAA +
Preference number: 5 (lower is better)
Translates to: ISAHGQQRNPHRQLLHVVNRQHY*YHLHQK
Trigger: TTTTTGATGGAGATGATACAAGTAGTGCTGGCGATT...CACCACATGTAAGAGCTGTCTGTGGGGATTCCTCTGCTGTCCATGAGCAGAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTCAGACTGGCCACATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCTCTACCATCCACTCTTaGCTTGAGTCCCAAGAACTG +
Preference number: 5 (lower is better)
Translates to: IQTGHISSVQEPATHKLSSTIHS*LESQEL
Trigger: CAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGA...GCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAATGTGGCCAGTCTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGCAGTGCTCTCTTATGTaGCATACAGGAGTCCATGTA +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMQCSLM*HTGVHV
Trigger: TACATGGACTCCTGTATGCAACATAAGAGAGCACTG...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp TCTGGGGCATATCTACCATCCACTCTTTGCTTGAGTCCCAAGAACTaGAGTGCAAGCAATGAAGCTTGCTTGCTAATTCATCAGCACTTT +
Preference number: 5 (lower is better)
Translates to: SGAYLPSTLCLSPKN*SASNEACLLIHQHF
Trigger: AAAGTGCTGATGAATTAGCAAGCAAGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGATATGCCCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp TTCCAAACTACAATTAAGCCATTAATAGCACCTGCAGCCAAATACTaGCCACAGGGAGACCAGGTTACTATATTGAGTGTCTGGGAGATG +
Preference number: 5 (lower is better)
Translates to: FQTTIKPLIAPAAKY*PQGDQVTILSVWEM
Trigger: CATCTCCCAGACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGGTGCTATTAATGGCTTAATTGTAGTTTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp ATAACATATCCGACTACAAGTGGGATGCCAGGCCAGGCCACAAATTaGATAACCTTTCTCATGTTTTACCCTTTCCATGCAGTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: ITYPTTSGMPGQATN*ITFLMFYPFHAVFG
Trigger: ACCAAAGACTGCATGGAAAGGGTAAAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATATGTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGCCAGCAGCAATTTTGTaGCCGGCCCCATTGAAGACC +
Preference number: 5 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMPAAIL*PAPLKT
Trigger: GGTCTTCAATGGGGCCGGCAACAAAATTGCTGCTGG...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CTATTCTTACAGGACTACAGTTTAGTTTCCAGAACCCACAGAGGTGGCTCACAGCTTTCCATGCAGTCTTaGGTTTCCACATTCCAAACT +
Preference number: 5 (lower is better)
Translates to: LFLQDYSLVSRTHRGGSQLSMQS*VSTFQT
Trigger: AGTTTGGAATGTGGAAACCAAAGACTGCATGGAAAG...CTGTGAGCCACCTCTGTGGGTTCTGGAAACTAAACTGTAGTCCTGTAAGAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp TTTTCTAGGGCTGGAGAATTGGCTCAGTGGTTAGGAGCACTTGCTATTCTTACACTACTAGATACCTTATaGCTCGACACCTTTCCACTG +
Preference number: 5 (lower is better)
Translates to: FSRAGELAQWLGALAILTLLDTL*LDTFPL
Trigger: CAGTGGAAAGGTGTCGAGCAATAAGGTATCTAGTAG...TGTAAGAATAGCAAGTGCTCCTAACCACTGAGCCAATTCTCCAGCCCTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp ATTCAGACTGGCCACATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCAGAAAGAAAATGATCTaGCCTTCAGCAGAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: IQTGHISSVQEPATHKLSRKKMI*PSAEKP
Trigger: GGGCTTCTCTGCTGAAGGCAAGATCATTTTCTTTCT...GCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAATGTGGCCAGTCTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTTTATAATGCCCTTATaGCTCGACACCTTTCCACTG +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMFIMPL*LDTFPL
Trigger: CAGTGGAAAGGTGTCGAGCAATAAGGGCATTATAAA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111792.9
CDS-3UTR CAA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTTGGTCAGATTTTCCTTaGCAGTGCTCTCTTATGTTG +
Preference number: 5 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSWSDFP*QCSLML
Trigger: CAACATAAGAGAGCACTGCAAAGGAAAATCTGACCA...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp CTTCTACTGCAAAACCTAAACAAAGGCGGGAAAGCCCTAGGAGGTACTGTAATGTTTGGCCTTTCTCTGTaGAAGTCTGACAGTAAGGAA +
Preference number: 5 (lower is better)
Translates to: LLLQNLNKGGKALGGTVMFGLSL*KSDSKE
Trigger: TTCCTTACTGTCAGACTTCAACAGAGAAAGGCCAAA...CATTACAGTACCTCCTAGGGCTTTCCCGCCTTTGTTTAGGTTTTGCAGTAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp GGTGTTCCTGACACAGGAAAATCACCACTTTGTTGTGTGTTGTTTTGCGGCAGTAACCGAATGCCAAAATaGTTCCTCCATTTGGCCTTT +
Preference number: 5 (lower is better)
Translates to: GVPDTGKSPLCCVLFCGSNRMPK*FLHLAF
Trigger: AAAGGCCAAATGGAGGAACAATTTTGGCATTCGGTT...ACTGCCGCAAAACAACACACAACAAAGTGGTGATTTTCCTGTGTCAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp GGGAGACCAGGTTACTATATTGAGTGTCTGGGAGATGGAACTATCTaGAAGATCGAATGGATTACTCCAGGTTTCTCTTCTGTACAGCTT +
Preference number: 5 (lower is better)
Translates to: GRPGYYIECLGDGTI*KIEWITPGFSSVQL
Trigger: AAGCTGTACAGAAGAGAAACCTGGAGTAATCCATTCGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACCTGGTCTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 90 bp TTAAGAGCTGGTGTATCAGAGGAATTGGCACTTTGGAATAAGTTCTaGCCATGGTTATGTGACTCTGGTTTCTCTTCAGAAACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: LRAGVSEELALWNKF*PWLCDSGFSSETVS
Trigger: GGACACTGTTTCTGAAGAGAAACCAGAGTCACATAACCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTCTGATACACCAGCTCTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 90 bp TCTGCCAATTCAGCTGCCTTTTCTGCAGCAAGTTCACTAAGTTTCTaGGCCAATATTAATTTCCGAGAGCGAGAAGCATATTTAATGGCT +
Preference number: 5 (lower is better)
Translates to: SANSAAFSAASSLSF*ANINFREREAYLMA
Trigger: AGCCATTAAATATGCTTCTCGCTCTCGGAAATTAATATTGGCTCAGAAACTTAGTGAACTTGCTGCAGAAAAGGCAGCTGAATTGGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS-3UTR CAA 90 bp ATTTCAAGTGTTCAAGAGCCTGCCACACATAAATTGAGCACAACTTTAGAAATGATGTCCTCGAAATGTTaGCTGCTGGCTGTTATCCAT +
Preference number: 5 (lower is better)
Translates to: ISSVQEPATHKLSTTLEMMSSKC*LLAVIH
Trigger: ATGGATAACAGCCAGCAGCAAACATTTCGAGGACAT...CATTTCTAAAGTTGTGCTCAATTTATGTGTGGCAGGCTCTTGAACACTTGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS-3UTR CAA 90 bp AATAGAAATATTAGAAAAATATATTTTCGGGCTGGCGAGATGGCTCAGTGGTTAAATCGCCAGCACTACTaGTATCATCTCCATCAAAAA +
Preference number: 5 (lower is better)
Translates to: NRNIRKIYFRAGEMAQWLNRQHY*YHLHQK
Trigger: TTTTTGATGGAGATGATACAAGTAGTGCTGGCGATT...TAACCACTGAGCCATCTCGCCAGCCCGAAAATATATTTTTCTAATATTTCTATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111790.2
CDS CCA 72 bp CGGCCTTGGGCTGCCACGCGAGTCTGCAGATGGACTTaGCGTTCACCACGTCATTGCTCTTTTGCAGTACTG +
Preference number: 6 (lower is better)
Translates to: RPWAATRVCRWT*RSPRHCSFAVL
Trigger: CAGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp ACTTCCCGGCCTTGGGCTGCCACGCGAGTCTGCAGATaGACTTGGCGTTCACCACGTCATTGCTCTTTTGCA +
Preference number: 6 (lower is better)
Translates to: TSRPWAATRVCR*TWRSPRHCSFA
Trigger: TGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp CCGGCCTTGGGCTGCCACGCGAGTCTGCAGATGGACTaGGCGTTCACCACGTCATTGCTCTTTTGCAGTACT +
Preference number: 6 (lower is better)
Translates to: PALGCHASLQMD*AFTTSLLFCST
Trigger: AGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp AGTAACTTCCCGGCCTTGGGCTGCCACGCGAGTCTGCAGATGGACTaGGCGTTCACCACGTCATTGCTCTTTTGCAGTACTGGCCAACTG +
Preference number: 6 (lower is better)
Translates to: SNFPALGCHASLQMD*AFTTSLLFCSTGQL
Trigger: CAGTTGGCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGGGAAGTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp GATTTTTCCACAGGAACTGCTAGTAACTTCCCGGCCTaGGGCTGCCACGCGAGTCTGCAGATGGACTTGGCG +
Preference number: 6 (lower is better)
Translates to: DFSTGTASNFPA*GCHASLQMDLA
Trigger: CGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGGGAAGTTACTAGCAGTTCCTGTGGAAAAATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp CTCACAGATCTCGCTGACCACACGCTTTCGCTTCTTTaGTTCAGCTCCATCGCTGGCAGTTTCTCCCTTGGC +
Preference number: 6 (lower is better)
Translates to: LTDLADHTLSLL*FSSIAGSFSLG
Trigger: GCCAAGGGAGAAACTGCCAGCGATGGAGCTGAAGCAAAGAAGCGAAAGCGTGTGGTCAGCGAGATCTGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp ATTTTTCCACAGGAACTGCTAGTAACTTCCCGGCCTTaGGCTGCCACGCGAGTCTGCAGATGGACTTGGCGT +
Preference number: 6 (lower is better)
Translates to: IFPQELLVTSRP*AATRVCRWTWR
Trigger: ACGCCAAGTCCATCTGCAGACTCGCGTGGCAGCCCAAGGCCGGGAAGTTACTAGCAGTTCCTGTGGAAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp GCGAGTCTGCAGATGGACTTGGCGTTCACCACGTCATaGCTCTTTTGCAGTACTGGCCAACTGACAGCACAG +
Preference number: 6 (lower is better)
Translates to: ASLQMDLAFTTS*LFCSTGQLTAQ
Trigger: CTGTGCTGTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp CTGGAACCCAGTCTTTGGCCTTTGGTTTTCCGAGTTTaGAAGGCACACGGCTGGAGCATCAGAGGACGAGCT +
Preference number: 6 (lower is better)
Translates to: LEPSLWPLVFRV*KAHGWSIRGRA
Trigger: AGCTCGTCCTCTGATGCTCCAGCCGTGTGCCTTCAAAACTCGGAAAACCAAAGGCCAAAGACTGGGTTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp TGGAACCCAGTCTTTGGCCTTTGGTTTTCCGAGTTTTaGAGGCACACGGCTGGAGCATCAGAGGACGAGCTT +
Preference number: 6 (lower is better)
Translates to: WNPVFGLWFSEF*RHTAGASEDEL
Trigger: AAGCTCGTCCTCTGATGCTCCAGCCGTGTGCCTTCAAAACTCGGAAAACCAAAGGCCAAAGACTGGGTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp GAAACAGTGTCCTCTCTGTCCTCAGCATCTTCAACTTaGCTTCTGACCCGTGGCCGACTCCATTCTGTAGTG +
Preference number: 6 (lower is better)
Translates to: ETVSSLSSASST*LLTRGRLHSVV
Trigger: CACTACAGAATGGAGTCGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGAGGACAGAGAGGACACTGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp CCTAGACCGAGGCATATGGCTTCGATGTCCTCATTCTaGGGCATATCTACCATCCACTCTTTGCTTGAGTCC +
Preference number: 6 (lower is better)
Translates to: PRPRHMASMSSF*GISTIHSLLES
Trigger: GGACTCAAGCAAAGAGTGGATGGTAGATATGCCCCAGAATGAGGACATCGAAGCCATATGCCTCGGTCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp GCTTCAGCTCCATCGCTGGCAGTTTCTCCCTTGGCTTaGTTAGTCCATGCCTTCCTTTCTTCAGCGGACAAT +
Preference number: 6 (lower is better)
Translates to: ASAPSLAVSPLA*LVHAFLSSADN
Trigger: ATTGTCCGCTGAAGAAAGGAAGGCATGGACTAACAAAGCCAAGGGAGAAACTGCCAGCGATGGAGCTGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp CGCGAGTCTGCAGATGGACTTGGCGTTCACCACGTCATTGCTCTTTaGCAGTACTGGCCAACTGACAGCACAGGTCTGATCAGATATATT +
Preference number: 6 (lower is better)
Translates to: RESADGLGVHHVIAL*QYWPTDSTGLIRYI
Trigger: AATATATCTGATCAGACCTGTGCTGTCAGTTGGCCAGTACTGCAAAAGAGCAATGACGTGGTGAACGCCAAGTCCATCTGCAGACTCGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp CGCTTTCGCTTCTTTGCTTCAGCTCCATCGCTGGCAGTTTCTCCCTaGGCTTTGTTAGTCCATGCCTTCCTTTCTTCAGCGGACAATACT +
Preference number: 6 (lower is better)
Translates to: RFRFFASAPSLAVSP*ALLVHAFLSSADNT
Trigger: AGTATTGTCCGCTGAAGAAAGGAAGGCATGGACTAACAAAGCCAAGGGAGAAACTGCCAGCGATGGAGCTGAAGCAAAGAAGCGAAAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp CTGTTTCTTCCTGGTTCTCTGTCTCACAGATCTCGCTaGCCACACGCTTTCGCTTCTTTGCTTCAGCTCCAT +
Preference number: 6 (lower is better)
Translates to: LFLPGSLSHRSR*PHAFASLLQLH
Trigger: ATGGAGCTGAAGCAAAGAAGCGAAAGCGTGTGGTCAGCGAGATCTGTGAGACAGAGAACCAGGAAGAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp ATCAGCCTGTGGAGTTCTTTTCTGGAAATAGGATGCTaGAGATGCCTGCTTAGACCTTGGCTTGGGAGTGAG +
Preference number: 6 (lower is better)
Translates to: ISLWSSFLEIGC*RCLLRPWLGSE
Trigger: CTCACTCCCAAGCCAAGGTCTAAGCAGGCATCTGCAGCATCCTATTTCCAGAAAAGAACTCCACAGGCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp AGAAACAGTGTCCTCTCTGTCCTCAGCATCTTCAACTaGACTTCTGACCCGTGGCCGACTCCATTCTGTAGT +
Preference number: 6 (lower is better)
Translates to: RNSVLSVLSIFN*TSDPWPTPFCS
Trigger: ACTACAGAATGGAGTCGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGAGGACAGAGAGGACACTGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp TTTCTCTTCAGAAACAGTGTCCTCTCTGTCCTCAGCATCTTCAACTaGACTTCTGACCCGTGGCCGACTCCATTCTGTAGTGGTGTGACT +
Preference number: 6 (lower is better)
Translates to: FLFRNSVLSVLSIFN*TSDPWPTPFCSGVT
Trigger: AGTCACACCACTACAGAATGGAGTCGGCCACGGGTCAGAAGTCAAGTTGAAGATGCTGAGGACAGAGAGGACACTGTTTCTGAAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp TCTATGATAAACAATGCAAAGCTGTTCTCCGTGTCCTaGCATGGATACCACAGGTCCAGGAAGGCAGAAGAC +
Preference number: 6 (lower is better)
Translates to: SMINNAKLFSVS*HGYHRSRKAED
Trigger: GTCTTCTGCCTTCCTGGACCTGTGGTATCCATGGCAGGACACGGAGAACAGCTTTGCATTGTTTATCATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp CTTATCAGCCTGTGGAGTTCTTTTCTGGAAATAGGATaGTGCAGATGCCTGCTTAGACCTTGGCTTGGGAGT +
Preference number: 6 (lower is better)
Translates to: LISLWSSFLEIG*CRCLLRPWLGS
Trigger: ACTCCCAAGCCAAGGTCTAAGCAGGCATCTGCAGCATCCTATTTCCAGAAAAGAACTCCACAGGCTGATAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp GATAAACAATGCAAAGCTGTTCTCCGTGTCCTGCCATaGATACCACAGGTCCAGGAAGGCAGAAGACTTCTT +
Preference number: 6 (lower is better)
Translates to: DKQCKAVLRVLP*IPQVQEGRRLL
Trigger: AAGAAGTCTTCTGCCTTCCTGGACCTGTGGTATCCATGGCAGGACACGGAGAACAGCTTTGCATTGTTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp TCACTTGACCCAGCAGCAATTTTGTTGCCGGCCCCATaGAAGACCACATGGTTTGCATTTGTAGTGAAGCGT +
Preference number: 6 (lower is better)
Translates to: SLDPAAILLPAP*KTTWFAFVVKR
Trigger: ACGCTTCACTACAAATGCAAACCATGTGGTCTTCAATGGGGCCGGCAACAAAATTGCTGCTGGGTCAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp TCCGACTACAAGTGGGATGCCAGGCCAGGCCACAAATaGCATAACCTTTCTCATGTTTTACCCTTTCCATGC +
Preference number: 6 (lower is better)
Translates to: SDYKWDARPGHK*HNLSHVLPFPC
Trigger: GCATGGAAAGGGTAAAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp CCTCGAAATGTTTGCTGCTGGCTGTTATCCATCACATCCACAACTTaGACCAGAAAATCACTTGACCCAGCAGCAATTTTGTTGCCGGCC +
Preference number: 6 (lower is better)
Translates to: PRNVCCWLLSITSTT*TRKSLDPAAILLPA
Trigger: GGCCGGCAACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAACATTTCGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp GCACCTGCAGCCAAATACTGCCCACAGGGAGACCAGGTTACTATATaGAGTGTCTGGGAGATGGAACTATCTGAAAGATCGAATGGATTA +
Preference number: 6 (lower is better)
Translates to: APAAKYCPQGDQVTI*SVWEMELSERSNGL
Trigger: TAATCCATTCGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp ATGATGGATAGAGGTGTCATGGAACTCCACGTCTATGGCACTGTCTaGATCGTCGTTATAGCAGCGAATAATCCCAACAGAGTTCCACAC +
Preference number: 6 (lower is better)
Translates to: MMDRGVMELHVYGTV*IVVIAANNPNRVPH
Trigger: GTGTGGAACTCTGTTGGGATTATTCGCTGCTATAACGACGATCAAGACAGTGCCATAGACGTGGAGTTCCATGACACCTCTATCCATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp GTTTACCCATCCTTGGCTGCTCGAGAAAACTGCACCTaGTTTAAGAGCTGGTGTATCAGAGGAATTGGCACT +
Preference number: 6 (lower is better)
Translates to: VYPSLAARENCT*FKSWCIRGIGT
Trigger: AGTGCCAATTCCTCTGATACACCAGCTCTTAAATCAGGTGCAGTTTTCTCGAGCAGCCAAGGATGGGTAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp GAACTGACTACTACCTTGAAGGGGTTTACCCATCCTTaGCTGCTCGAGAAAACTGCACCTGATTTAAGAGCT +
Preference number: 6 (lower is better)
Translates to: ELTTTLKGFTHP*LLEKTAPDLRA
Trigger: AGCTCTTAAATCAGGTGCAGTTTTCTCGAGCAGCCAAGGATGGGTAAACCCCTTCAAGGTAGTAGTCAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp ACTTTGACCAGAAAATCACTTGACCCAGCAGCAATTTaGTTGCCGGCCCCATTGAAGACCACATGGTTTGCA +
Preference number: 6 (lower is better)
Translates to: TLTRKSLDPAAI*LPAPLKTTWFA
Trigger: TGCAAACCATGTGGTCTTCAATGGGGCCGGCAACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp GCCAAATACTGCCCACAGGGAGACCAGGTTACTATATaGAGTGTCTGGGAGATGGAACTATCTGAAAGATCG +
Preference number: 6 (lower is better)
Translates to: AKYCPQGDQVTI*SVWEMELSERS
Trigger: CGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp AGAGGTGTCATGGAACTCCACGTCTATGGCACTGTCTaGATCGTCGTTATAGCAGCGAATAATCCCAACAGA +
Preference number: 6 (lower is better)
Translates to: RGVMELHVYGTV*IVVIAANNPNR
Trigger: TCTGTTGGGATTATTCGCTGCTATAACGACGATCAAGACAGTGCCATAGACGTGGAGTTCCATGACACCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp CTCATTCTGGGGCATATCTACCATCCACTCTTTGCTTaGGTCCCAAGAACTGAAGTGCAAGCAATGAAGCTT +
Preference number: 6 (lower is better)
Translates to: LILGHIYHPLFA*VPRTEVQAMKL
Trigger: AAGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGATATGCCCCAGAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp CTTAAAACAGGGGCATCATGTCCTCGAAATGTTTGCTaGTGGCTGTTATCCATCACATCCACAACTTTGACC +
Preference number: 6 (lower is better)
Translates to: LKTGASCPRNVC*WLLSITSTTLT
Trigger: GGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAACATTTCGAGGACATGATGCCCCTGTTTTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp GATCTCCATCAAACCCTGTACCTCTATGATAAACAATaGAAAGCTGTTCTCCGTGTCCTGCCATGGATACCA +
Preference number: 6 (lower is better)
Translates to: DLHQTLYLYDKQ*KAVLRVLPWIP
Trigger: TGGTATCCATGGCAGGACACGGAGAACAGCTTTGCATTGTTTATCATAGAGGTACAGGGTTTGATGGAGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp AGTGGTCAGATTTTCCTTTGCAGTGCTCTCTTATGTTaGATACAGGAGTCCATGTATTCCCGAGTCCTCTGT +
Preference number: 6 (lower is better)
Translates to: SGQIFLCSALLC*IQESMYSRVLC
Trigger: ACAGAGGACTCGGGAATACATGGACTCCTGTATGCAACATAAGAGAGCACTGCAAAGGAAAATCTGACCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
ENSMUST00000227041.2
CDS CCA 72 bp AAAACAGGGGCATCATGTCCTCGAAATGTTTGCTGCTaGCTGTTATCCATCACATCCACAACTTTGACCAGA +
Preference number: 6 (lower is better)
Translates to: KTGASCPRNVCC*LLSITSTTLTR
Trigger: TCTGGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAACATTTCGAGGACATGATGCCCCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp TTCCTTCCACATCAGTATAACATATCCGACTACAAGTaGGATGCCAGGCCAGGCCACAAATTGCATAACCTT +
Preference number: 6 (lower is better)
Translates to: FLPHQYNISDYK*DARPGHKLHNL
Trigger: AAGGTTATGCAATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATATGTTATACTGATGTGGAAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp TATAACATATCCGACTACAAGTGGGATGCCAGGCCAGGCCACAAATaGCATAACCTTTCTCATGTTTTACCCTTTCCATGCAGTCTTTGG +
Preference number: 6 (lower is better)
Translates to: YNISDYKWDARPGHK*HNLSHVLPFPCSLW
Trigger: CCAAAGACTGCATGGAAAGGGTAAAACATGAGAAAGGTTATGCAATTTGTGGCCTGGCCTGGCATCCCACTTGTAGTCGGATATGTTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp AGACTTAAAACAGGGGCATCATGTCCTCGAAATGTTTaGTGCTGGCTGTTATCCATCACATCCACAACTTTG +
Preference number: 6 (lower is better)
Translates to: RLKTGASCPRNV*CWLLSITSTTL
Trigger: CAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAACATTTCGAGGACATGATGCCCCTGTTTTAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp ACAATTAAGCCATTAATAGCACCTGCAGCCAAATACTaGCCACAGGGAGACCAGGTTACTATATTGAGTGTC +
Preference number: 6 (lower is better)
Translates to: TIKPLIAPAAKY*PQGDQVTILSV
Trigger: GACACTCAATATAGTAACCTGGTCTCCCTGTGGGCAGTATTTGGCTGCAGGTGCTATTAATGGCTTAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp GTTTGCTGCTGGCTGTTATCCATCACATCCACAACTTaGACCAGAAAATCACTTGACCCAGCAGCAATTTTG +
Preference number: 6 (lower is better)
Translates to: VCCWLLSITSTT*TRKSLDPAAIL
Trigger: CAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp TTTGCTGCTGGCTGTTATCCATCACATCCACAACTTTaGCCAGAAAATCACTTGACCCAGCAGCAATTTTGT +
Preference number: 6 (lower is better)
Translates to: FAAGCYPSHPQL*PENHLTQQQFC
Trigger: ACAAAATTGCTGCTGGGTCAAGTGATTTTCTGGTCAAAGTTGTGGATGTGATGGATAACAGCCAGCAGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp GTAACATCAACTGAGTTTTCATCGTCTCCCAAGTCATaGTCTGCAGCCAGCATGATGTCATCATTATCGTCA +
Preference number: 6 (lower is better)
Translates to: VTSTEFSSSPKS*SAASMMSSLSS
Trigger: TGACGATAATGATGACATCATGCTGGCTGCAGATCATGACTTGGGAGACGATGAAAACTCAGTTGATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS GCA 72 bp GGTGTATCAGAGGAATTGGCACTTTGGAATAAGTTCTaGCCATGGTTATGTGACTCTGGTTTCTCTTCAGAA +
Preference number: 6 (lower is better)
Translates to: GVSEELALWNKF*PWLCDSGFSSE
Trigger: TTCTGAAGAGAAACCAGAGTCACATAACCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTCTGATACACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp TCAGAGGAATTGGCACTTTGGAATAAGTTCTGCCCATaGTTATGTGACTCTGGTTTCTCTTCAGAAACAGTG +
Preference number: 6 (lower is better)
Translates to: SEELALWNKFCP*LCDSGFSSETV
Trigger: CACTGTTTCTGAAGAGAAACCAGAGTCACATAACCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CCA 72 bp GATTTAAGAGCTGGTGTATCAGAGGAATTGGCACTTTaGAATAAGTTCTGCCCATGGTTATGTGACTCTGGT +
Preference number: 6 (lower is better)
Translates to: DLRAGVSEELAL*NKFCPWLCDSG
Trigger: ACCAGAGTCACATAACCATGGGCAGAACTTATTCCAAAGTGCCAATTCCTCTGATACACCAGCTCTTAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp TCTTTGCTTGAGTCCCAAGAACTGAAGTGCAAGCAATaGAGCTTGCTTGCTAATTCATCAGCACTTTCACAT +
Preference number: 6 (lower is better)
Translates to: SLLESQELKCKQ*SLLANSSALSH
Trigger: ATGTGAAAGTGCTGATGAATTAGCAAGCAAGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAAGCAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS TCA 72 bp TATCTACCATCCACTCTTTGCTTGAGTCCCAAGAACTaGAGTGCAAGCAATGAAGCTTGCTTGCTAATTCAT +
Preference number: 6 (lower is better)
Translates to: YLPSTLCLSPKN*SASNEACLLIH
Trigger: ATGAATTAGCAAGCAAGCTTCATTGCTTGCACTTCAGTTCTTGGGACTCAAGCAAAGAGTGGATGGTAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp GACCTTGGCTTGGGAGTGAGAGGCTTTATAACTGGAGATTTTTCATaGTTTTCCATTCGATTAAGAGAAGTGGACTTCCTGGATGATTTG +
Preference number: 6 (lower is better)
Translates to: DLGLGVRGFITGDFS*FSIRLREVDFLDDL
Trigger: CAAATCATCCAGGAAGTCCACTTCTCTTAATCGAATGGAAAACAATGAAAAATCTCCAGTTATAAAGCCTCTCACTCCCAAGCCAAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 90 bp TCCTCATTTATAATGCCCTTTGAAAAAGAAGGGATCTCAACCGCATaGTCGTTTAGAAAATCGCCAGCACTACTTGTATCATCTCCATCA +
Preference number: 6 (lower is better)
Translates to: SSFIMPFEKEGISTA*SFRKSPALLVSSPS
Trigger: TGATGGAGATGATACAAGTAGTGCTGGCGATTTTCTAAACGACAATGCGGTTGAGATCCCTTCTTTTTCAAAGGGCATTATAAATGAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111790.2
ENSMUST00000187531.8
CDS TCA 72 bp GGTTACTATATTGAGTGTCTGGGAGATGGAACTATCTaGAAGATCGAATGGATTACTCCAGGTTTCTCTTCT +
Preference number: 6 (lower is better)
Translates to: GYYIECLGDGTI*KIEWITPGFSS
Trigger: AGAAGAGAAACCTGGAGTAATCCATTCGATCTTTCAGATAGTTCCATCTCCCAGACACTCAATATAGTAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp TATGCCATCAGGAACTCCTTCAGGGAATGTATAGACTaGGACGGTATTATTAGAAACTGCAGTGACCAATTT +
Preference number: 6 (lower is better)
Translates to: YAIRNSFRECID*DGIIRNCSDQF
Trigger: AAATTGGTCACTGCAGTTTCTAATAATACCGTCCAAGTCTATACATTCCCTGAAGGAGTTCCTGATGGCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111790.2
ENSMUST00000111792.9
ENSMUST00000187531.8
CDS CAA 72 bp CAACCGCATTGTCGTTTAGAAAATCGCCAGCACTACTaGTATCATCTCCATCAAAAAGATCATTGTAGTCCT +
Preference number: 6 (lower is better)
Translates to: QPHCRLENRQHY*YHLHQKDHCSP
Trigger: AGGACTACAATGATCTTTTTGATGGAGATGATACAAGTAGTGCTGGCGATTTTCTAAACGACAATGCGGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111790.2
ENSMUST00000187531.8
CDS CAA 72 bp ATAATGCCCTTTGAAAAAGAAGGGATCTCAACCGCATaGTCGTTTAGAAAATCGCCAGCACTACTTGTATCA +
Preference number: 6 (lower is better)
Translates to: IMPFEKEGISTA*SFRKSPALLVS
Trigger: TGATACAAGTAGTGCTGGCGATTTTCTAAACGACAATGCGGTTGAGATCCCTTCTTTTTCAAAGGGCATTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111790.2
ENSMUST00000187531.8
CDS CAA 72 bp TCCATTCGATTAAGAGAAGTGGACTTCCTGGATGATTaGTTCATGCTGTCTAAAATGTTAGCTGAGCGTGTT +
Preference number: 6 (lower is better)
Translates to: SIRLREVDFLDD*FMLSKMLAERV
Trigger: AACACGCTCAGCTAACATTTTAGACAGCATGAACAAATCATCCAGGAAGTCCACTTCTCTTAATCGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111792.9
ENSMUST00000187531.8