RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDFY1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073643

Ensembl transcript IDs: ENSMUST00000048820.14, ENSMUST00000113510.8, ENSMUST00000113511.8, ENSMUST00000113512.8, ENSMUST00000113513.8, ENSMUST00000113514.8, ENSMUST00000113515.8, ENSMUST00000125641.2, ENSMUST00000143368.8, ENSMUST00000187005.7

Found 313 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACTGCAATGCCACCATCTGCCGAGCAGGAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTGACTGCACTCTGTCATGGTGGCCTT +
Preference number: 1 (lower is better)
Translates to: TLQCHHLPSRRRAAS*AAGSTVTALCHGGL
Trigger: AAGGCCACCATGACAGAGTGCAGTCACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCAGTGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 90 bp CCCACGCCTGGCTCAGCACTATTCCACAGGGCAATGACTCCGCCATaGTCTGTTTCCCTTGCGTGGGCAGAACCACAGGCTGAGCTAAAC +
Preference number: 1 (lower is better)
Translates to: PTPGSALFHRAMTPP*SVSLAWAEPQAELN
Trigger: GTTTAGCTCAGCCTGTGGTTCTGCCCACGCAAGGGAAACAGACCATGGCGGAGTCATTGCCCTGTGGAATAGTGCTGAGCCAGGCGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp CTCTTCTCTGCTAACATCCATGTTCCACACTGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTGCCTCGTGAGCTGCAGGTAGCACAG +
Preference number: 1 (lower is better)
Translates to: LFSANIHVPHCNATI*RAGDELPRELQVAQ
Trigger: CTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCAGTGTGGAACATGGATGTTAGCAGAGAAGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 90 bp GTGTCCAGATCATACTGCAAACAGGAAGCCCACGACGAGAAGAAGTaGCGGCCAAGCATATTCCCGCTGCGCGTGCACATCCAGCTCACA +
Preference number: 1 (lower is better)
Translates to: VSRSYCKQEAHDEKK*RPSIFPLRVHIQLT
Trigger: TGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCTCGTCGTGGGCTTCCTGTTTGCAGTATGATCTGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 90 bp CACATGATGACGCTGTTGTCGGATGCTCCCGAGAAGAGTAACCGTTaGATAGGGTCCCACCAAAGGCAGGCGATGCTACCTTCATGTCCC +
Preference number: 1 (lower is better)
Translates to: HMMTLLSDAPEKSNR*IGSHQRQAMLPSCP
Trigger: GGGACATGAAGGTAGCATCGCCTGCCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTCGGGAGCATCCGACAACAGCGTCATCATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 90 bp CATGGAGGATGCTATGCATCACGTGTAGCAGACATCACCCAGCTCTaGGATCAGTGTGGAGAAAATCCAGTTGCCAGGCTGCAGCCCACC +
Preference number: 1 (lower is better)
Translates to: HGGCYASRVADITQL*DQCGENPVARLQPT
Trigger: GGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATAGCATCCTCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 90 bp GACTCCGCCATGGTCTGTTTCCCTTGCGTGGGCAGAACCACAGGCTaGGCTAAACCAAGCAGCGAGGAGAGCATTCTACATTGTGGTTTC +
Preference number: 1 (lower is better)
Translates to: DSAMVCFPCVGRTTG*AKPSSEESILHCGF
Trigger: GAAACCACAATGTAGAATGCTCTCCTCGCTGCTTGGTTTAGCTCAGCCTGTGGTTCTGCCCACGCAAGGGAAACAGACCATGGCGGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 90 bp CTATGCATCACGTGTAGCAGACATCACCCAGCTCTGGGATCAGTGTaGAGAAAATCCAGTTGCCAGGCTGCAGCCCACCACAGGAGTCAT +
Preference number: 1 (lower is better)
Translates to: LCITCSRHHPALGSV*RKSSCQAAAHHRSH
Trigger: ATGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 90 bp AAGGCAGGCGATGCTACCTTCATGTCCCTTGAGGGTCGTGATAACTaGACAAGTGTTCTGCTCCAGCTTCAGCAGGGTGATCTGTCCCGA +
Preference number: 1 (lower is better)
Translates to: KAGDATFMSLEGRDN*TSVLLQLQQGDLSR
Trigger: TCGGGACAGATCACCCTGCTGAAGCTGGAGCAGAACACTTGTTCAGTTATCACGACCCTCAAGGGACATGAAGGTAGCATCGCCTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 90 bp AGTCGTAACAGGAATCACAAACTCGAACCTGGAACTCAAAACCCATaGCGGGGTAACTGGACCGCTTGCTGCTGCACTTCCCACAGACGG +
Preference number: 1 (lower is better)
Translates to: SRNRNHKLEPGTQNP*RGNWTACCCTSHRR
Trigger: CCGTCTGTGGGAAGTGCAGCAGCAAGCGGTCCAGTTACCCCGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGATTCCTGTTACGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR GCA 90 bp AGCAGACATCACCCAGCTCTGGGATCAGTGTGGAGAAAATCCAGTTaGCAGGCTGCAGCCCACCACAGGAGTCATATCCCATATCTTCAC +
Preference number: 1 (lower is better)
Translates to: SRHHPALGSVWRKSS*QAAAHHRSHIPYLH
Trigger: GTGAAGATATGGGATATGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 90 bp AAAGGTTCACCCAGGGGACACTGGCTGGGACAGAAACAACTAGAGTaGGCCAAACCCAAGAGCAGATTAGGACACCACCTGACAGAACAG +
Preference number: 1 (lower is better)
Translates to: KGSPRGHWLGQKQLE*AKPKSRLGHHLTEQ
Trigger: CTGTTCTGTCAGGTGGTGTCCTAATCTGCTCTTGGGTTTGGCTCACTCTAGTTGTTTCTGTCCCAGCCAGTGTCCCCTGGGTGAACCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp TCACCCAGCTCTGGGATCAGTGTGGAGAAAATCCAGTTGCCAGGCTaGAGCCCACCACAGGAGTCATATCCCATATCTTCACAACACGAT +
Preference number: 1 (lower is better)
Translates to: SPSSGISVEKIQLPG*SPPQESYPISSQHD
Trigger: ATCGTGTTGTGAAGATATGGGATATGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCACACTGATCCCAGAGCTGGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 90 bp AGTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTaGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAA +
Preference number: 1 (lower is better)
Translates to: SRPFLPASSRLPRFY*NSSCATFCLHKHTQ
Trigger: TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp ACTGGTGCGGGAGAACAAAGCATAGTCTACAGCAACAGTGTCTATTaGTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAA +
Preference number: 1 (lower is better)
Translates to: TGAGEQSIVYSNSVY*CPLGSKLKLGHSKQ
Trigger: TTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGACACTGTTGCTGTAGACTATGCTTTGTTCTCCCGCACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 90 bp CTTCTGAGGGGCATAACTTGCTACCATATAACAAGGGCTTGGTCTTaGGACTACAAACAAATGTATCAGTTAGCAAGACTGGGCTGTTCC +
Preference number: 1 (lower is better)
Translates to: LLRGITCYHITRAWS*DYKQMYQLARLGCS
Trigger: GGAACAGCCCAGTCTTGCTAACTGATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 90 bp CATAAAAGAAAGCTTTGTCCACAGGGCAGGTTTGGGAGAAGGAGATaGATGTGCTCTGTCTTGTTATATGACAGCTGTAAAGGTTCACCC +
Preference number: 1 (lower is better)
Translates to: HKRKLCPQGRFGRRR*MCSVLLYDSCKGSP
Trigger: GGGTGAACCTTTACAGCTGTCATATAACAAGACAGAGCACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGACAAAGCTTTCTTTTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp TCAAGTCAAGAGCTCTCTGTAAATACAGAGCCCATTATGCCTGGCTaGCTTTCCTTTCCTCATTGTTTGTGTTTTATCCATTGTGACCCC +
Preference number: 1 (lower is better)
Translates to: SSQELSVNTEPIMPG*LSFPHCLCFIHCDP
Trigger: GGGGTCACAATGGATAAAACACAAACAATGAGGAAAGGAAAGGCAGCCAGGCATAATGGGCTCTGTATTTACAGAGAGCTCTTGACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp GGTGCGGGAGAACAAAGCATAGTCTACAGCAACAGTGTCTATTGCTaGCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTA +
Preference number: 1 (lower is better)
Translates to: GAGEQSIVYSNSVYC*PLGSKLKLGHSKQL
Trigger: TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGACACTGTTGCTGTAGACTATGCTTTGTTCTCCCGCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 90 bp TATCTTCACAACACGATCTGTCCCACAGGTCACCATCAGTCCCCTTaGAATGTCCATGGACATATGGGAAATGTTATGTTTTCCTTCATG +
Preference number: 1 (lower is better)
Translates to: YLHNTICPTGHHQSP*NVHGHMGNVMFSFM
Trigger: CATGAAGGAAAACATAACATTTCCCATATGTCCATGGACATTGCAAGGGGACTGATGGTGACCTGTGGGACAGATCGTGTTGTGAAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR GCA 90 bp TGGCCAAAAATTGGACAACACATTTCATACAACAGCTTTTCTAAATaGTATGTAAGTGATTTGCAGGTTAGGGATTACTGTACAAGACCT +
Preference number: 1 (lower is better)
Translates to: WPKIGQHISYNSFSK*YVSDLQVRDYCTRP
Trigger: AGGTCTTGTACAGTAATCCCTAACCTGCAAATCACTTACATAGCATTTAGAAAAGCTGTTGTATGAAATGTGTTGTCCAATTTTTGGCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp GACGGCCTGCCCACACTTCCTGCCTCAAGCCCAGGGTCTTTGTGTCCCACATCTTGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTG +
Preference number: 2 (lower is better)
Translates to: DGLPTLPASSPGSLCPTSCNATI*RAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCA...AGATGTGGGACACAAAGACCCTGGGCTTGAGGCAGGAAGTGTGGGCAGGCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR GCA 90 bp GACGGCCTGCCCACACTTCCTGCCTCAAGCCCAGGGTCTTTGTGTCCCACATCTATCCATGTTCCACACTaGAATGCCACCATCTGCCGA +
Preference number: 2 (lower is better)
Translates to: DGLPTLPASSPGSLCPTSIHVPH*NATICR
Trigger: TCGGCAGATGGTGGCATTGCAGTGTGGAACATGGAT...AGATGTGGGACACAAAGACCCTGGGCTTGAGGCAGGAAGTGTGGGCAGGCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR TCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACCCTGGTTGTGTATCTaGGTACTCTCAGGGGCCTCA +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKPWLCI*VLSGAS
Trigger: TGAGGCCCCTGAGAGTACTCAGATACACAACCAGGG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GCTGCTCACACTTCTGACAGGAGTCGCTTTCTAACCACTGAGGAGCCTCTTCTCCTGCAGGTAGCACAGTaGCTGCACTCTGTCATGGTG +
Preference number: 2 (lower is better)
Translates to: AAHTSDRSRFLTTEEPLLLQVAQ*LHSVMV
Trigger: CACCATGACAGAGTGCAGTCACTGTGCTACCTGCAG...GAGAAGAGGCTCCTCAGTGGTTAGAAAGCGACTCCTGTCAGAAGTGTGAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR GCA 90 bp GAGAAGAGTAACCGTTGGATAGGGTCCCACCAAAGGCAGGCGATGCTACCTTCATATTCCCGCTGCGCGTaGACATCCAGCTCACACACT +
Preference number: 2 (lower is better)
Translates to: EKSNRWIGSHQRQAMLPSYSRCA*TSSSHT
Trigger: AGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATA...TGAAGGTAGCATCGCCTGCCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTCCCTCCTTACCCACTaGTTCAATGTTCATGAGGCA +
Preference number: 2 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHSLLTH*FNVHEA
Trigger: TGCCTCATGAACATTGAACCAGTGGGTAAGGAGGGA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATCTGGTTCAATGTTCATaGGGCAGTTTTGCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHLVQCS*GSFAEE
Trigger: TTCCTCAGCAAAACTGCCTCATGAACATTGAACCAG...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp TGCTATGCATCACGTGTAGCAGACATCACCCAGCTCTGGGATCAGTGTGGAGAACAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCA +
Preference number: 2 (lower is better)
Translates to: CYASRVADITQLWDQCGEQAYSR*ACTSSS
Trigger: TGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTG...TTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR GCA 90 bp GAACTCAAAACCCATGACGGGGTAACTGGACCGCTTGCTGCTGCACTTCCCACAGTGTCCAGATCATACTaGAAACAGGAAGCCCACGAC +
Preference number: 2 (lower is better)
Translates to: ELKTHDGVTGPLAAALPTVSRSY*KQEAHD
Trigger: GTCGTGGGCTTCCTGTTTGCAGTATGATCTGGACAC...TGTGGGAAGTGCAGCAGCAAGCGGTCCAGTTACCCCGTCATGGGTTTTGAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACGACTGGGCTGTTCCATaGAGTAGGCTGCTGGCACGC +
Preference number: 2 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNDWAVP*SRLLAR
Trigger: GCGTGCCAGCAGCCTACTCCATGGAACAGCCCAGTC...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTCCCTCCTTACCCACTaGTTCAATGTTCATGAGGCA +
Preference number: 2 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVSLLTH*FNVHEA
Trigger: TGCCTCATGAACATTGAACCAGTGGGTAAGGAGGGA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GATGGAGTCGTAACAGGAATCACAAACTCGAACCTGGAACTCAAAACCCATGACCCAGCTTCAGCAGGGTaGTCTGTCCCGAGTAATCGC +
Preference number: 2 (lower is better)
Translates to: DGVVTGITNSNLELKTHDPASAG*SVPSNR
Trigger: GCGATTACTCGGGACAGATCACCCTGCTGAAGCTGG...GTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGATTCCTGTTACGACTCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCCTTAGTCCTCTCTaGCAGAATGGCCTTGATCTT +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKSLSPL*QNGLDL
Trigger: AAGATCAAGGCCATTCTGCCAGAGAGGACTAAGGCT...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACTGAGGGGCATAACTTaGTACCATATAACAAGGGCT +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKLRGIT*YHITRA
Trigger: AGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp ACAGGTCACCATCAGTCCCCTTGCAATGTCCATGGACATATGGGAAATGTTATGGGTAACTGGACCGCTTaGTGCTGCACTTCCCACAGA +
Preference number: 2 (lower is better)
Translates to: TGHHQSPCNVHGHMGNVMGNWTA*CCTSHR
Trigger: TCTGTGGGAAGTGCAGCAGCAAGCGGTCCAGTTACC...CATAACATTTCCCATATGTCCATGGACATTGCAAGGGGACTGATGGTGACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTCACCCAGGGGACACTaGCTGGGACAGAAACAACTA +
Preference number: 2 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNSPRGH*LGQKQL
Trigger: TAGTTGTTTCTGTCCCAGCCAGTGTCCCCTGGGTGA...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACTCCCACGGTTCTACTaGAATAGTTCATGTGCTACT +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKLPRFY*NSSCAT
Trigger: AGTAGCACATGAACTATTCCAGTAGAACCGTGGGAG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTCCACAGGGCAGGTTTaGGAGAAGGAGATGAATGTG +
Preference number: 2 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNSTGQV*EKEMNV
Trigger: CACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGA...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTACAAGGGCTTGGTCTTaGGACTACAAACAAATGTAT +
Preference number: 2 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVTRAWS*DYKQMY
Trigger: ATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGT...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCAGAAACAACTAGAGTaGGCCAAACCCAAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNQKQLE*AKPKSR
Trigger: TCTGCTCTTGGGTTTGGCTCACTCTAGTTGTTTCTG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACATATAACAAGGGCTTaGTCTTGGGACTACAAACAA +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKHITRA*SWDYKQ
Trigger: TTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACCCTGGTTGTGTATCTaGGTACTCTCAGGGGCCTCA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLPWLCI*VLSGAS
Trigger: TGAGGCCCCTGAGAGTACTCAGATACACAACCAGGG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTCTGGCCACCTCCCCTaGAGAAAGACAGAAAGCTCT +
Preference number: 2 (lower is better)
Translates to: GITVQDLTDNFSNGPPISSGHLP*RKTESS
Trigger: AGAGCTTTCTGTCTTTCTTCAGGGGAGGTGGCCAGA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATGTAACCCAACACAGTaGTACAGTGAGATTTTAAAT +
Preference number: 2 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKCNPTQ*YSEILN
Trigger: ATTTAAAATCTCACTGTAGCACTGTGTTGGGTTACA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 90 bp ACTTCTGAGGGGCATAACTTGCTACCATATAACAAGGGCTTGGTCTaGGGACTACAAACAAATGTATCAGTTAGCAAGACTGGGCTGTTC +
Preference number: 2 (lower is better)
Translates to: TSEGHNLLPYNKGLV*GLQTNVSVSKTGLF
Trigger: GAACAGCCCAGTCTTGCTAACTGATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATATTCCACAGGGCAATaGCTCCGCCATGGTCTGTTT +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLYSTGQ*LRHGLF
Trigger: AAACAGACCATGGCGGAGTCATTGCCCTGTGGAATA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCAAAACTGCCTGCCTCTaGCTCCCGAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSKTACL*LPSAGI
Trigger: AATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTCCACAGGGCAGGTTTaGGAGAAGGAGATGAATGTG +
Preference number: 2 (lower is better)
Translates to: GITVQDLTDNFSNGPPISSTGQV*EKEMNV
Trigger: CACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATCCACAGGGCAGGTTTaGGAGAAGGAGATGAATGTG +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNISTGQV*EKEMNV
Trigger: CACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAAGAGCCCATTATGCCTaGCTGCCTTTCCTTTCCTCA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLRAHYA*LPFLSS
Trigger: TGAGGAAAGGAAAGGCAGCCAGGCATAATGGGCTCT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGCAATGACTCCGCCATaGTCTGTTTCCCTTGCGTGG +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSAMTPP*SVSLAW
Trigger: CCACGCAAGGGAAACAGACCATGGCGGAGTCATTGC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 90 bp TTGTACATCAGCACCATAAAAGAAAGCTTTGTCCACAGGGCAGGTTaGGGAGAAGGAGATGAATGTGCTCTGTCTTGTTATATGACAGCT +
Preference number: 2 (lower is better)
Translates to: LYISTIKESFVHRAG*GEGDECALSCYMTA
Trigger: AGCTGTCATATAACAAGACAGAGCACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGACAAAGCTTTCTTTTATGGTGCTGATGTACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 90 bp ATATCTTCACAACACGATCTGTCCCACAGGTCACCATCAGTCCCCTaGCAATGTCCATGGACATATGGGAAATGTTATGTTTTCCTTCAT +
Preference number: 2 (lower is better)
Translates to: ISSQHDLSHRSPSVP*QCPWTYGKCYVFLH
Trigger: ATGAAGGAAAACATAACATTTCCCATATGTCCATGGACATTGCAAGGGGACTGATGGTGACCTGTGGGACAGATCGTGTTGTGAAGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTCTGGCCACCTCCCCTaGAGAAAGACAGAAAGCTCT +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSSGHLP*RKTESS
Trigger: AGAGCTTTCTGTCTTTCTTCAGGGGAGGTGGCCAGA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACAGAAACAACTAGAGTaGGCCAAACCCAAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLQKQLE*AKPKSR
Trigger: TCTGCTCTTGGGTTTGGCTCACTCTAGTTGTTTCTG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAATACAGAGCCCATTATaGCTGGCTGCCTTTCCTTTC +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIIQSPL*LAAFPF
Trigger: GAAAGGAAAGGCAGCCAGGCATAATGGGCTCTGTAT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAAAATATGGCCCCCTTTaGTACCTGACACATAGGGGA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLKYGPL*YLTHRG
Trigger: TCCCCTATGTGTCAGGTAGCAAAGGGGGCCATATTT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATCCCTCCTTACCCACTaGTTCAATGTTCATGAGGCA +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNISLLTH*FNVHEA
Trigger: TGCCTCATGAACATTGAACCAGTGGGTAAGGAGGGA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTCCCTCCTTACCCACTaGTTCAATGTTCATGAGGCA +
Preference number: 2 (lower is better)
Translates to: GITVQDLTDNFSNGPPISSLLTH*FNVHEA
Trigger: TGCCTCATGAACATTGAACCAGTGGGTAAGGAGGGA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAAGCCTTAGTCCTCTCTaGCAGAATGGCCTTGATCTT +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLSLSPL*QNGLDL
Trigger: AAGATCAAGGCCATTCTGCCAGAGAGGACTAAGGCT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 90 bp TACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTaGCTACCATATAACAAGGGCTTGGTCTTGGGACTACAAACAAAT +
Preference number: 2 (lower is better)
Translates to: YNIIQKRQSTSEGHN*LPYNKGLVLGLQTN
Trigger: ATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTCTGGTTCAATGTTCATaGGGCAGTTTTGCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: GITVQDLTDNFSNGPPISLVQCS*GSFAEE
Trigger: TTCCTCAGCAAAACTGCCTCATGAACATTGAACCAG...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTATTCCACAGGGCAATaGCTCCGCCATGGTCTGTTT +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSYSTGQ*LRHGLF
Trigger: AAACAGACCATGGCGGAGTCATTGCCCTGTGGAATA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACTGAGGGGCATAACTTaGTACCATATAACAAGGGCT +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLLRGIT*YHITRA
Trigger: AGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACTCCCACGGTTCTACTaGAATAGTTCATGTGCTACT +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLLPRFY*NSSCAT
Trigger: AGTAGCACATGAACTATTCCAGTAGAACCGTGGGAG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACTGGTTCAATGTTCATaGGGCAGTTTTGCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQLVQCS*GSFAEE
Trigger: TTCCTCAGCAAAACTGCCTCATGAACATTGAACCAG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACTGAGGGGCATAACTTaGTACCATATAACAAGGGCT +
Preference number: 2 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQLRGIT*YHITRA
Trigger: AGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCAAATATGGCCCCCTTTaGTACCTGACACATAGGGGA +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSKYGPL*YLTHRG
Trigger: TCCCCTATGTGTCAGGTAGCAAAGGGGGCCATATTT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCATAAGGCAAAAAGCCTaGGCCTTATTGTCCCTTCAG +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSIRQKA*ALLSLQ
Trigger: CTGAAGGGACAATAAGGCTCAGGCTTTTTGCCTTAT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAACAAGGGCTTGGTCTTaGGACTACAAACAAATGTAT +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNITRAWS*DYKQMY
Trigger: ATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACATATAACAAGGGCTTaGTCTTGGGACTACAAACAA +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIHITRA*SWDYKQ
Trigger: TTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACATCTCTTGGTAATCTaGCCAAAAATTGGACAACAC +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLHLLVI*PKIGQH
Trigger: GTGTTGTCCAATTTTTGGCCAGATTACCAAGAGATG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACATCTCTTGGTAATCTaGCCAAAAATTGGACAACAC +
Preference number: 2 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIHLLVI*PKIGQH
Trigger: GTGTTGTCCAATTTTTGGCCAGATTACCAAGAGATG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAAGGGAATATTCAGTTTaGTCTACCACAGATATCCAA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLREYSV*STTDIQ
Trigger: TTGGATATCTGTGGTAGATCAAACTGAATATTCCCT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAGACATAGTTGTTACTTaGGGAACTCTCTTAAGTGAT +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLDIVVT*GTLLSD
Trigger: ATCACTTAAGAGAGTTCCTCAAGTAACAACTATGTC...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAACAAGGGCTTGGTCTTaGGACTACAAACAAATGTAT +
Preference number: 2 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQTRAWS*DYKQMY
Trigger: ATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGT...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACATATAACAAGGGCTTaGTCTTGGGACTACAAACAA +
Preference number: 2 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQHITRA*SWDYKQ
Trigger: TTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACATCTCTTGGTAATCTaGCCAAAAATTGGACAACAC +
Preference number: 2 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQHLLVI*PKIGQH
Trigger: GTGTTGTCCAATTTTTGGCCAGATTACCAAGAGATG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAGGGCAAAACATCCTTTaGTCTTATTTCTCAAGTCAA +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLGQNIL*SYFSSQ
Trigger: TTGACTTGAGAAATAAGACCAAAGGATGTTTTGCCC...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATTGAGAATTCTGGGATaGAAAGGACATAGTTGTTAC +
Preference number: 2 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLLRILG*KGHSCY
Trigger: GTAACAACTATGTCCTTTCCATCCCAGAATTCTCAA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCAACACAGTGCTACAGTaGGATTTTAAATCCATACCC +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSNTVLQ*DFKSIP
Trigger: GGGTATGGATTTAAAATCTCACTGTAGCACTGTGTT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCACACCCTCTACTTCTTaGTCCTTGTCTGTACAAATT +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSTPSTS*SLSVQI
Trigger: AATTTGTACAGACAAGGATCAAGAAGTAGAGGGTGT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 90 bp CAATTAAGCAACAGACACTTGCAGAAGTCAGCATATATTACTTATTaGTTAAGCCTCCCATGTAGAATGAGCAGATCACTGTCATTAACA +
Preference number: 2 (lower is better)
Translates to: QLSNRHLQKSAYITY*LSLPCRMSRSLSLT
Trigger: TGTTAATGACAGTGATCTGCTCATTCTACATGGGAGGCTTAACAAATAAGTAATATATGCTGACTTCTGCAAGTGTCTGTTGCTTAATTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGACATAGTTGTTACTTaGGGAACTCTCTTAAGTGAT +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSDIVVT*GTLLSD
Trigger: ATCACTTAAGAGAGTTCCTCAAGTAACAACTATGTC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGGGCAAAACATCCTTTaGTCTTATTTCTCAAGTCAA +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSGQNIL*SYFSSQ
Trigger: TTGACTTGAGAAATAAGACCAAAGGATGTTTTGCCC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTTGAGAATTCTGGGATaGAAAGGACATAGTTGTTAC +
Preference number: 2 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSLRILG*KGHSCY
Trigger: GTAACAACTATGTCCTTTCCATCCCAGAATTCTCAA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 72 bp CCAGGCTGGCCTCGAACTCATAAAACTGCCTGCCTCTaGCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCAC +
Preference number: 3 (lower is better)
Translates to: PGWPRTHKTACL*LPSAGIKGVRH
Trigger: GTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCAGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp AACCCACGCCTGGCTCAGCACTATTCCACAGGGCAATaGCTCCGCCATGGTCTGTTTCCCTTGCGTGGGCAG +
Preference number: 3 (lower is better)
Translates to: NPRLAQHYSTGQ*LRHGLFPLRGQ
Trigger: CTGCCCACGCAAGGGAAACAGACCATGGCGGAGTCATTGCCCTGTGGAATAGTGCTGAGCCAGGCGTGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp TGCCACCATCTGCCGAGCAGGAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTGACTGCACTCTGTCAT +
Preference number: 3 (lower is better)
Translates to: CHHLPSRRRAAS*AAGSTVTALCH
Trigger: ATGACAGAGTGCAGTCACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCTCCTGCTCGGCAGATGGTGGCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR GCA 72 bp AGAAGAAGTGGCGGCCAAGCATATTCCCGCTGCGCGTaGACATCCAGCTCACACACTTGTCGTGGCCAGTGC +
Preference number: 3 (lower is better)
Translates to: RRSGGQAYSRCA*TSSSHTCRGQC
Trigger: GCACTGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR GCA 72 bp ACGACGAGAAGAAGTGGCGGCCAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCACACACTTGTCGTGGC +
Preference number: 3 (lower is better)
Translates to: TTRRSGGQAYSR*ACTSSSHTCRG
Trigger: GCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCTCGTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR GCA 72 bp GCTAACATCCATGTTCCACACTGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTGCCTCGTGAGCTGCAG +
Preference number: 3 (lower is better)
Translates to: ANIHVPHCNATI*RAGDELPRELQ
Trigger: CTGCAGCTCACGAGGCAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCAGTGTGGAACATGGATGTTAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 72 bp GGCTCAGCACTATTCCACAGGGCAATGACTCCGCCATaGTCTGTTTCCCTTGCGTGGGCAGAACCACAGGCT +
Preference number: 3 (lower is better)
Translates to: GSALFHRAMTPP*SVSLAWAEPQA
Trigger: AGCCTGTGGTTCTGCCCACGCAAGGGAAACAGACCATGGCGGAGTCATTGCCCTGTGGAATAGTGCTGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp TCATACTGCAAACAGGAAGCCCACGACGAGAAGAAGTaGCGGCCAAGCATATTCCCGCTGCGCGTGCACATC +
Preference number: 3 (lower is better)
Translates to: SYCKQEAHDEKK*RPSIFPLRVHI
Trigger: GATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCTCGTCGTGGGCTTCCTGTTTGCAGTATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 72 bp ACGCTGTTGTCGGATGCTCCCGAGAAGAGTAACCGTTaGATAGGGTCCCACCAAAGGCAGGCGATGCTACCT +
Preference number: 3 (lower is better)
Translates to: TLLSDAPEKSNR*IGSHQRQAMLP
Trigger: AGGTAGCATCGCCTGCCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTCGGGAGCATCCGACAACAGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 72 bp CCCAGGGGACACTGGCTGGGACAGAAACAACTAGAGTaGGCCAAACCCAAGAGCAGATTAGGACACCACCTG +
Preference number: 3 (lower is better)
Translates to: PRGHWLGQKQLE*AKPKSRLGHHL
Trigger: CAGGTGGTGTCCTAATCTGCTCTTGGGTTTGGCTCACTCTAGTTGTTTCTGTCCCAGCCAGTGTCCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 72 bp AGGAGCCTCTTCTCTGCTAACATCCATGTTCCACACTaGAATGCCACCATCTGCCGAGCAGGAGACGAGCTG +
Preference number: 3 (lower is better)
Translates to: RSLFSANIHVPH*NATICRAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCAGTGTGGAACATGGATGTTAGCAGAGAAGAGGCTCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR TCA 72 bp AGGAATCACAAACTCGAACCTGGAACTCAAAACCCATaGCGGGGTAACTGGACCGCTTGCTGCTGCACTTCC +
Preference number: 3 (lower is better)
Translates to: RNHKLEPGTQNP*RGNWTACCCTS
Trigger: GGAAGTGCAGCAGCAAGCGGTCCAGTTACCCCGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTCTTCTAAACCCTTCATaGTTCCCTCCTTACCCACTG +
Preference number: 3 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVLLNPS*FPPYPL
Trigger: CAGTGGGTAAGGAGGGAACAATGAAGGGTTTAGAAG...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp CACGTTTTTGAAAGGAGATGTGACCACAGGCTCAAGTaGGGAGCGAAGTGCATTCAGCCTGCATTCCCTCCT +
Preference number: 3 (lower is better)
Translates to: HVFERRCDHRLK*GAKCIQPAFPP
Trigger: AGGAGGGAATGCAGGCTGAATGCACTTCGCTCCTCACTTGAGCCTGTGGTCACATCTCCTTTCAAAAACGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp GATGCTACCTTCATGTCCCTTGAGGGTCGTGATAACTaGACAAGTGTTCTGCTCCAGCTTCAGCAGGGTGAT +
Preference number: 3 (lower is better)
Translates to: DATFMSLEGRDN*TSVLLQLQQGD
Trigger: ATCACCCTGCTGAAGCTGGAGCAGAACACTTGTTCAGTTATCACGACCCTCAAGGGACATGAAGGTAGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR CCA 72 bp CAGTGGCTGTTGAGCTACATGAAGGGTCTCCATTCATaGAGGATGCTATGCATCACGTGTAGCAGACATCAC +
Preference number: 3 (lower is better)
Translates to: QWLLSYMKGLHS*RMLCITCSRHH
Trigger: GTGATGTCTGCTACACGTGATGCATAGCATCCTCCATGAATGGAGACCCTTCATGTAGCTCAACAGCCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000187005.7
3UTR-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTGTGTGCTCATGGGTTaGCATTTAAGAAGTTCTAAG +
Preference number: 3 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVCVLMG*HLRSSK
Trigger: CTTAGAACTTCTTAAATGCAAACCCATGAGCACACA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACAGAACAGGTACCTaGATGAGGTTTATCAGTAAC +
Preference number: 3 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKDRTGT*MRFISN
Trigger: GTTACTGATAAACCTCATCAAGGTACCTGTTCTGTC...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 72 bp TACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTTaGTACCATATAACAAGGGCTTGGTCTTGGGACTAC +
Preference number: 3 (lower is better)
Translates to: YRSARVLLRGIT*YHITRAWSWDY
Trigger: GTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp TTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTaGAATAGTTCATGTGCTACTTTCTGTTTACACAAA +
Preference number: 3 (lower is better)
Translates to: FLPASSRLPRFY*NSSCATFCLHK
Trigger: TTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACGACAGAACAGGTACCTaGATGAGGTTTATCAGTAAC +
Preference number: 3 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNDRTGT*MRFISN
Trigger: GTTACTGATAAACCTCATCAAGGTACCTGTTCTGTC...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACAACAAGGGCTTGGTCTaGGGACTACAAACAAATGTA +
Preference number: 3 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNNKGLV*GLQTNV
Trigger: TACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTT...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAACGTCACCCACTCTCTaGTCCAAAGCACTGGAGCAA +
Preference number: 3 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLTSPTL*SKALEQ
Trigger: TTGCTCCAGTGCTTTGGACAAGAGAGTGGGTGACGT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAACGTCACCCACTCTCTaGTCCAAAGCACTGGAGCAA +
Preference number: 3 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNITSPTL*SKALEQ
Trigger: TTGCTCCAGTGCTTTGGACAAGAGAGTGGGTGACGT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp AAGCTTTGTCCACAGGGCAGGTTTGGGAGAAGGAGATaGATGTGCTCTGTCTTGTTATATGACAGCTGTAAA +
Preference number: 3 (lower is better)
Translates to: KLCPQGRFGRRR*MCSVLLYDSCK
Trigger: TTTACAGCTGTCATATAACAAGACAGAGCACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGACAAAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp CATGAAATGTTGCTAGAGAAGTCCGGTCCTCATCTTTaGTGGAGTCGTAACAGGAATCACAAACTCGAACCT +
Preference number: 3 (lower is better)
Translates to: HEMLLEKSGPHL*WSRNRNHKLEP
Trigger: AGGTTCGAGTTTGTGATTCCTGTTACGACTCCATCAAAGATGAGGACCGGACTTCTCTAGCAACATTTCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
3UTR-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACTTCTAAACCCTTCATaGTTCCCTCCTTACCCACTG +
Preference number: 3 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLLLNPS*FPPYPL
Trigger: CAGTGGGTAAGGAGGGAACAATGAAGGGTTTAGAAG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 72 bp GAGCTCTCTGTAAATACAGAGCCCATTATGCCTGGCTaGCTTTCCTTTCCTCATTGTTTGTGTTTTATCCAT +
Preference number: 3 (lower is better)
Translates to: ELSVNTEPIMPG*LSFPHCLCFIH
Trigger: ATGGATAAAACACAAACAATGAGGAAAGGAAAGGCAGCCAGGCATAATGGGCTCTGTATTTACAGAGAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp CTGAGGGGCATAACTTGCTACCATATAACAAGGGCTTaGTCTTGGGACTACAAACAAATGTATCAGTTAGCA +
Preference number: 3 (lower is better)
Translates to: LRGITCYHITRA*SWDYKQMYQLA
Trigger: TGCTAACTGATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACTTCTAAACCCTTCATaGTTCCCTCCTTACCCACTG +
Preference number: 3 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQLLNPS*FPPYPL
Trigger: CAGTGGGTAAGGAGGGAACAATGAAGGGTTTAGAAG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACGGTGTAGAGGACATTaGTATGGCAAGCATAGGTTT +
Preference number: 3 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIRCRGH*YGKHRF
Trigger: AAACCTATGCTTGCCATACAAATGTCCTCTACACCG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR GCA 72 bp CAAAAATGGAACCCACAAGTAGAAAGAACAAAAATTTaGAGCGTCTCTCGGATACACAAGGCATCCTACTCT +
Preference number: 3 (lower is better)
Translates to: QKWNPQVERTKI*SVSRIHKASYS
Trigger: AGAGTAGGATGCCTTGTGTATCCGAGAGACGCTGCAAATTTTTGTTCTTTCTACTTGTGGGTTCCATTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp GGCATAACTTGCTACCATATAACAAGGGCTTGGTCTTaGGACTACAAACAAATGTATCAGTTAGCAAGACTG +
Preference number: 3 (lower is better)
Translates to: GITCYHITRAWS*DYKQMYQLARL
Trigger: CAGTCTTGCTAACTGATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp TCAAGAGCTCTCTGTAAATACAGAGCCCATTATGCCTaGCTGCCTTTCCTTTCCTCATTGTTTGTGTTTTAT +
Preference number: 3 (lower is better)
Translates to: SRALCKYRAHYA*LPFLSSLFVFY
Trigger: ATAAAACACAAACAATGAGGAAAGGAAAGGCAGCCAGGCATAATGGGCTCTGTATTTACAGAGAGCTCTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCTTCTAAACCCTTCATaGTTCCCTCCTTACCCACTG +
Preference number: 3 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSLLNPS*FPPYPL
Trigger: CAGTGGGTAAGGAGGGAACAATGAAGGGTTTAGAAG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACGGTGTAGAGGACATTaGTATGGCAAGCATAGGTTT +
Preference number: 3 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQRCRGH*YGKHRF
Trigger: AAACCTATGCTTGCCATACAAATGTCCTCTACACCG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTGACAGAACAGGTACCTaGATGAGGTTTATCAGTAAC +
Preference number: 3 (lower is better)
Translates to: GITVQDLTDNFSNGPPISDRTGT*MRFISN
Trigger: GTTACTGATAAACCTCATCAAGGTACCTGTTCTGTC...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAGGGGCAAAACATCCTTaGGTCTTATTTCTCAAGTCA +
Preference number: 3 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIGAKHP*VLFLKS
Trigger: TGACTTGAGAAATAAGACCAAAGGATGTTTTGCCCC...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAGAGGGAATATTCAGTTaGATCTACCACAGATATCCA +
Preference number: 3 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIEGIFS*IYHRYP
Trigger: TGGATATCTGTGGTAGATCAAACTGAATATTCCCTC...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR TCA 72 bp GTGTTTAGCAACAGAATCCAAATAAGGCAAAAAGCCTaGGCCTTATTGTCCCTTCAGTCAGTAAACTTGAGA +
Preference number: 3 (lower is better)
Translates to: VFSNRIQIRQKA*ALLSLQSVNLR
Trigger: TCTCAAGTTTACTGACTGAAGGGACAATAAGGCTCAGGCTTTTTGCCTTATTTGGATTCTGTTGCTAAACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAATGCTATGTAAGTGATTaGCAGGTTAGGGATTACTGT +
Preference number: 3 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQCYVSD*QVRDYC
Trigger: ACAGTAATCCCTAACCTGCAAATCACTTACATAGCA...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTGCTATGTAAGTGATTaGCAGGTTAGGGATTACTGT +
Preference number: 3 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSCYVSD*QVRDYC
Trigger: ACAGTAATCCCTAACCTGCAAATCACTTACATAGCA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGAGGGAATATTCAGTTaGATCTACCACAGATATCCA +
Preference number: 3 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSEGIFS*IYHRYP
Trigger: TGGATATCTGTGGTAGATCAAACTGAATATTCCCTC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCCAGTAAAGAACACATaGAGAATAAAGACTCGGCAT +
Preference number: 3 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSPVKNT*RIKTRH
Trigger: ATGCCGAGTCTTTATTCTCAATGTGTTCTTTACTGG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CCA 72 bp GACATAGTAAACAATTACAGTCTAGTGAATAAGAAGTaGTTTCTACCAACATACAGGCCTATTGCTATCACT +
Preference number: 3 (lower is better)
Translates to: DIVNNYSLVNKK*FLPTYRPIAIT
Trigger: AGTGATAGCAATAGGCCTGTATGTTGGTAGAAACCACTTCTTATTCACTAGACTGTAATTGTTTACTATGTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GAAGAAGTGGCGGCCAAGCATATTCCCGCTGCGCGTGCACATCCAGCTCACACAGCAGCACCGGGCGGCTaGTCTGAGGCCTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: EEVAAKHIPAARAHPAHTAAPGG*SEAWSG
Trigger: TCCACTCCAGGCCTCAGAGCAGCCGCCCGGTGCTGC...TGTGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR TCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAACCGGGCGGCTGCTCTaGGGCCTGGAGTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKTGRLL*GLEWIS
Trigger: GGAGATCCACTCCAGGCCTCAGAGCAGCCGCCCGGT...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTG +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHRRAAS*AAGSTV
Trigger: CACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCT...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATCCACACTTCCTGCAGTaGTGCTGCCTCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHPHFLQ*CCLKPR
Trigger: CCTGGGCTTGAGGCAGCATCACTGCAGGAAGTGTGG...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATCGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHRGGMP*QSKGRP
Trigger: TGGCCTCCCCTTGCTCTGCCATGGCATACCACCACG...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GCGATGCTACCTTCATGTCCCTTGAGGGTCGTGATAACTGAACAAGTGTTCTGCACCGGGCGGCTGCTCTaGGGCCTGGAGTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: AMLPSCPLRVVITEQVFCTGRLL*GLEWIS
Trigger: GGAGATCCACTCCAGGCCTCAGAGCAGCCGCCCGGT...GCAGAACACTTGTTCAGTTATCACGACCCTCAAGGGACATGAAGGTAGCATCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR TCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATGTCGTGGCCAGTGCTaGTCACCCACTCGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKCRGQC*SPTRQP
Trigger: TGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATCTGCAGGTAGCACAGTaGCTGCACTCTGTCATGGTG +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHLQVAQ*LHSVMV
Trigger: CACCATGACAGAGTGCAGTCACTGTGCTACCTGCAG...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATGGTAACTGGACCGCTTaGTGCTGCACTTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHGNWTA*CCTSHR
Trigger: TCTGTGGGAAGTGCAGCAGCAAGCGGTCCAGTTACC...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTGGAGAAAATCCAGTTaGCAGGCTGCAGCCCACCAC +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHWRKSS*QAAAHH
Trigger: GTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATATGCTGGGCCAGTACTaGCCGCTGTCTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHMLGQY*PLSLFS
Trigger: GCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCAT...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACGCAGCACCGGGCGGCTaGTCTGAGGCCTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNAAPGG*SEAWSG
Trigger: TCCACTCCAGGCCTCAGAGCAGCCGCCCGGTGCTGC...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTG +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVCNATI*RAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTATCCAGTTGCCAGGCTaGAGCCCACCACAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVIQLPG*SPPQES
Trigger: TGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGAT...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGTGACGGCGTCCTGGTaGCCCTCTATCTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKVTASW*PSILLS
Trigger: GCTGAGCAAGATAGAGGGCCACCAGGACGCCGTCAC...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTCGCTTTCTAACCACTaGGGAGCCTCTTCTCTGCTA +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHSLSNH*GASSLL
Trigger: TAGCAGAGAAGAGGCTCCTCAGTGGTTAGAAAGCGA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKPLCGR*WASTGR
Trigger: GCGGCCAGTACTGGCCCAGCATCTACCACACAATGG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTCAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVQAYSR*ACTSSS
Trigger: TGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTG...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATACTGAACAAGTGTTCTaGTCCAGCTTCAGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHTEQVF*SSFSRV
Trigger: CACCCTGCTGAAGCTGGAGCAGAACACTTGTTCAGT...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACCTGCCCACACTTCCTaGAGTGATGCTGCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKPAHTS*SDAASS
Trigger: GCTTGAGGCAGCATCACTGCAGGAAGTGTGGGCAGG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TGCTATGCATCACGTGTAGCAGACATCACCCAGCTCTGGGATCAGTGTGGAGAAGTGACGGCGTCCTGGTaGCCCTCTATCTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: CYASRVADITQLWDQCGEVTASW*PSILLS
Trigger: GCTGAGCAAGATAGAGGGCCACCAGGACGCCGTCAC...TTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR TCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTGTCGTGGCCAGTGCTaGTCACCCACTCGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNCRGQC*SPTRQP
Trigger: TGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACA...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATATTCCCGCTGCGCGTaGACATCCAGCTCACACACT +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKYSRCA*TSSSHT
Trigger: AGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GCTGCTCACACTTCTGACAGGAGTCGCTTTCTAACCACTGAGGAGCCTCTTCTCATGCTGGGCCAGTACTaGCCGCTGTCTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: AAHTSDRSRFLTTEEPLLMLGQY*PLSLFS
Trigger: GCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCAT...GAGAAGAGGCTCCTCAGTGGTTAGAAAGCGACTCCTGTCAGAAGTGTGAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CCA 90 bp CCCACAGGTCACCATCAGTCCCCTTGCAATGTCCATGGACATATGGGAAATGTTCGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PTGHHQSPCNVHGHMGNVRGGMP*QSKGRP
Trigger: TGGCCTCCCCTTGCTCTGCCATGGCATACCACCACG...AACATTTCCCATATGTCCATGGACATTGCAAGGGGACTGATGGTGACCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTACAGCCCCATTATCCTaGCCCACAAATATCCGCCTG +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVTAPLS*PTNIRL
Trigger: CAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGT...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACTCACACACTTGTCGTaGCCAGTGCTGATCACCCAC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKLTHLS*PVLITH
Trigger: GTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCTCTGCTAACATCCATGTTCCACACTGCAATGCCACCATCTGCCGAGCAGGAGCCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCA +
Preference number: 4 (lower is better)
Translates to: SLLTSMFHTAMPPSAEQEPQISA*CRGGMP
Trigger: TGGCATACCACCACGACAGCAGGCGGATATTTGTGG...CTCCTGCTCGGCAGATGGTGGCATTGCAGTGTGGAACATGGATGTTAGCAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR GCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTATCCATGTTCCACACTaGAATGCCACCATCTGCCGA +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVIHVPH*NATICR
Trigger: TCGGCAGATGGTGGCATTGCAGTGTGGAACATGGAT...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACGTGACGGCGTCCTGGTaGCCCTCTATCTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNVTASW*PSILLS
Trigger: GCTGAGCAAGATAGAGGGCCACCAGGACGCCGTCAC...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp TCCCACCAAAGGCAGGCGATGCTACCTTCATGTCCCTaGAGGGTCGTGATAACTGAACAAGTGTTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SHQRQAMLPSCP*RVVITEQVFCS
Trigger: GGAGCAGAACACTTGTTCAGTTATCACGACCCTCAAGGGACATGAAGGTAGCATCGCCTGCCTTTGGTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR TCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAACCGGGCGGCTGCTCTaGGGCCTGGAGTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNITGRLL*GLEWIS
Trigger: GGAGATCCACTCCAGGCCTCAGAGCAGCCGCCCGGT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAATGTCGTGGCCAGTGCTaGTCACCCACTCGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQCRGQC*SPTRQP
Trigger: TGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACA...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCCAGCTTCAGCAGGGTaGTCTGTCCCGAGTAATCGC +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNPASAG*SVPSNR
Trigger: GCGATTACTCGGGACAGATCACCCTGCTGAAGCTGG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATCGCTTTCTAACCACTaGGGAGCCTCTTCTCTGCTA +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKSLSNH*GASSLL
Trigger: TAGCAGAGAAGAGGCTCCTCAGTGGTTAGAAAGCGA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTCCGGTCCTCATCTTTaGTGGAGTCGTAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVSGPHL*WSRNRN
Trigger: ATTCCTGTTACGACTCCATCAAAGATGAGGACCGGA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAGCAGCACCGGGCGGCTaGTCTGAGGCCTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIAAPGG*SEAWSG
Trigger: TCCACTCCAGGCCTCAGAGCAGCCGCCCGGTGCTGC...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TATGCATCACGTGTAGCAGACATCACCCAGCTCTGGGATCAGTGTGGAGAAAATCCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGC +
Preference number: 4 (lower is better)
Translates to: YASRVADITQLWDQCGENPLCGR*WASTGR
Trigger: GCGGCCAGTACTGGCCCAGCATCTACCACACAATGG...ATTTTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR GCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGTGTCCAGATCATACTaGAAACAGGAAGCCCACGAC +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKVSRSY*KQEAHD
Trigger: GTCGTGGGCTTCCTGTTTGCAGTATGATCTGGACAC...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCTGCAGGTAGCACAGTaGCTGCACTCTGTCATGGTG +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNLQVAQ*LHSVMV
Trigger: CACCATGACAGAGTGCAGTCACTGTGCTACCTGCAG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAAAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTG +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQRRAAS*AAGSTV
Trigger: CACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCT...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACCACACTTCCTGCAGTaGTGCTGCCTCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQPHFLQ*CCLKPR
Trigger: CCTGGGCTTGAGGCAGCATCACTGCAGGAAGTGTGG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNQAYSR*ACTSSS
Trigger: TGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQRGGMP*QSKGRP
Trigger: TGGCCTCCCCTTGCTCTGCCATGGCATACCACCACG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCACCGGGCGGCTGCTCTaGGGCCTGGAGTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSTGRLL*GLEWIS
Trigger: GGAGATCCACTCCAGGCCTCAGAGCAGCCGCCCGGT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGCAGCACCGGGCGGCTaGTCTGAGGCCTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSAAPGG*SEAWSG
Trigger: TCCACTCCAGGCCTCAGAGCAGCCGCCCGGTGCTGC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGC +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQPLCGR*WASTGR
Trigger: GCGGCCAGTACTGGCCCAGCATCTACCACACAATGG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCA +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNPQISA*CRGGMP
Trigger: TGGCATACCACCACGACAGCAGGCGGATATTTGTGG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAATGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTG +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQCNATI*RAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCA...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAAATCCAGTTGCCAGGCTaGAGCCCACCACAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQIQLPG*SPPQES
Trigger: TGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGAT...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TATGCATCACGTGTAGCAGACATCACCCAGCTCTGGGATCAGTGTGGAGAAAATACAGCCCCATTATCCTaGCCCACAAATATCCGCCTG +
Preference number: 4 (lower is better)
Translates to: YASRVADITQLWDQCGENTAPLS*PTNIRL
Trigger: CAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGT...ATTTTCTCCACACTGATCCCAGAGCTGGGTGATGTCTGCTACACGTGATGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATCACAAACTCGAACCTaGAACTCAAAACCCATGACG +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKSQTRT*NSKPMT
Trigger: CGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTG +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLRRAAS*AAGSTV
Trigger: CACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGGTGGCCCTCTATCTTaGTCAGCAGCACCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSGGPLS*SAAPGG
Trigger: GCCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAATATTCCCGCTGCGCGTaGACATCCAGCTCACACACT +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQYSRCA*TSSSHT
Trigger: AGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATA...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQQAYSR*ACTSSS
Trigger: TGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAGCGGTGACGGCGTCCTaGTGGCCCTCTATCTTGCTC +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQAVTAS*WPSILL
Trigger: GAGCAAGATAGAGGGCCACCAGGACGCCGTCACCGC...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLRGGMP*QSKGRP
Trigger: TGGCCTCCCCTTGCTCTGCCATGGCATACCACCACG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTCGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISRGGMP*QSKGRP
Trigger: TGGCCTCCCCTTGCTCTGCCATGGCATACCACCACG...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACTCACACACTTGTCGTaGCCAGTGCTGATCACCCAC +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQLTHLS*PVLITH
Trigger: GTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACCAGCTTCAGCAGGGTaGTCTGTCCCGAGTAATCGC +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLPASAG*SVPSNR
Trigger: GCGATTACTCGGGACAGATCACCCTGCTGAAGCTGG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACCAGCTTCAGCAGGGTaGTCTGTCCCGAGTAATCGC +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIPASAG*SVPSNR
Trigger: GCGATTACTCGGGACAGATCACCCTGCTGAAGCTGG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAAGACGAGCTGCCTCGTaGGCTGCAGGTAGCACAGTG +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQRRAAS*AAGSTV
Trigger: CACTGTGCTACCTGCAGCTCACGAGGCAGCTCGTCT...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACCACACTTCCTGCAGTaGTGCTGCCTCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQPHFLQ*CCLKPR
Trigger: CCTGGGCTTGAGGCAGCATCACTGCAGGAAGTGTGG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGC +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLPLCGR*WASTGR
Trigger: GCGGCCAGTACTGGCCCAGCATCTACCACACAATGG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTG +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISCNATI*RAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACCTGCCCACACTTCCTaGAGTGATGCTGCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLPAHTS*SDAASS
Trigger: GCTTGAGGCAGCATCACTGCAGGAAGTGTGGGCAGG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCACCATCAGTCCCCTTaGAATGTCCATGGACATATG +
Preference number: 4 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNHHQSP*NVHGHM
Trigger: CATATGTCCATGGACATTGCAAGGGGACTGATGGTG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTATCCAGTTGCCAGGCTaGAGCCCACCACAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISIQLPG*SPPQES
Trigger: TGACTCCTGTGGTGGGCTGCAGCCTGGCAACTGGAT...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAGTGACGGCGTCCTGGTaGCCCTCTATCTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQVTASW*PSILLS
Trigger: GCTGAGCAAGATAGAGGGCCACCAGGACGCCGTCAC...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACCCTTGCAATGTCCATaGACATATGGGAAATGTTAT +
Preference number: 4 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKPLQCP*TYGKCY
Trigger: ATAACATTTCCCATATGTCCATGGACATTGCAAGGG...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCCACACTTCCTGCAGTaGTGCTGCCTCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSPHFLQ*CCLKPR
Trigger: CCTGGGCTTGAGGCAGCATCACTGCAGGAAGTGTGG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATATTCCCGCTGCGCGTaGACATCCAGCTCACACACT +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIYSRCA*TSSSHT
Trigger: AGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACAAGCATATTCCCGCTaGGCGTGCACATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIQAYSR*ACTSSS
Trigger: TGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAATGCAATGCCACCATCTaGCGAGCAGGAGACGAGCTG +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQCNATI*RAGDEL
Trigger: CAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCA...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAAATCCATGTTCCACACTaGAATGCCACCATCTGCCGA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQIHVPH*NATICR
Trigger: TCGGCAGATGGTGGCATTGCAGTGTGGAACATGGAT...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACCTGCCCACACTTCCTaGAGTGATGCTGCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQPAHTS*SDAASS
Trigger: GCTTGAGGCAGCATCACTGCAGGAAGTGTGGGCAGG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTGGTAACTGGACCGCTTaGTGCTGCACTTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISGNWTA*CCTSHR
Trigger: TCTGTGGGAAGTGCAGCAGCAAGCGGTCCAGTTACC...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATGGAGAAAATCCAGTTaGCAGGCTGCAGCCCACCAC +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIWRKSS*QAAAHH
Trigger: GTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTATGCTGGGCCAGTACTaGCCGCTGTCTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISMLGQY*PLSLFS
Trigger: GCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCAT...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAATGCTGGGCCAGTACTaGCCGCTGTCTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIMLGQY*PLSLFS
Trigger: GCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCAT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp ATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACTaGCTACCATATAACAAGGGCTTGGTCTTGGGACTA +
Preference number: 4 (lower is better)
Translates to: IQKRQSTSEGHN*LPYNKGLVLGL
Trigger: TAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp GGGAGAACAAAGCATAGTCTACAGCAACAGTGTCTATaGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACA +
Preference number: 4 (lower is better)
Translates to: GRTKHSLQQQCL*LPTRQQVKTGT
Trigger: TGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGACACTGTTGCTGTAGACTATGCTTTGTTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp CAACACGATCTGTCCCACAGGTCACCATCAGTCCCCTaGCAATGTCCATGGACATATGGGAAATGTTATGTT +
Preference number: 4 (lower is better)
Translates to: QHDLSHRSPSVP*QCPWTYGKCYV
Trigger: AACATAACATTTCCCATATGTCCATGGACATTGCAAGGGGACTGATGGTGACCTGTGGGACAGATCGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCCAGCTTCAGCAGGGTaGTCTGTCCCGAGTAATCGC +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSPASAG*SVPSNR
Trigger: GCGATTACTCGGGACAGATCACCCTGCTGAAGCTGG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCA +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLPQISA*CRGGMP
Trigger: TGGCATACCACCACGACAGCAGGCGGATATTTGTGG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAATGGAGAAAATCCAGTTaGCAGGCTGCAGCCCACCAC +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQWRKSS*QAAAHH
Trigger: GTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCA...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAACAGCCCCATTATCCTaGCCCACAAATATCCGCCTG +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLTAPLS*PTNIRL
Trigger: CAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTACAGCCCCATTATCCTaGCCCACAAATATCCGCCTG +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISTAPLS*PTNIRL
Trigger: CAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGT...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACTCACACACTTGTCGTaGCCAGTGCTGATCACCCAC +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQLTHLS*PVLITH
Trigger: GTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCTGCAGGTAGCACAGTaGCTGCACTCTGTCATGGTG +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSLQVAQ*LHSVMV
Trigger: CACCATGACAGAGTGCAGTCACTGTGCTACCTGCAG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCA +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQPQISA*CRGGMP
Trigger: TGGCATACCACCACGACAGCAGGCGGATATTTGTGG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTGTGTCCAGATCATACTaGAAACAGGAAGCCCACGAC +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISVSRSY*KQEAHD
Trigger: GTCGTGGGCTTCCTGTTTGCAGTATGATCTGGACAC...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTGGAGAAAATCCAGTTaGCAGGCTGCAGCCCACCAC +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSWRKSS*QAAAHH
Trigger: GTGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCATGCTGGGCCAGTACTaGCCGCTGTCTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSMLGQY*PLSLFS
Trigger: GCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCAT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAGAGAAGAGTAACCGTTaGATAGGGTCCCACCAAAGG +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLEKSNR*IGSHQR
Trigger: CCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTC...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAGAGAAGAGTAACCGTTaGATAGGGTCCCACCAAAGG +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIEKSNR*IGSHQR
Trigger: CCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTC...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAATCACAAACTCGAACCTaGAACTCAAAACCCATGACG +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQSQTRT*NSKPMT
Trigger: CGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGA...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp AGCACCATAAAAGAAAGCTTTGTCCACAGGGCAGGTTaGGGAGAAGGAGATGAATGTGCTCTGTCTTGTTAT +
Preference number: 4 (lower is better)
Translates to: STIKESFVHRAG*GEGDECALSCY
Trigger: ATAACAAGACAGAGCACATTCATCTCCTTCTCCCAAACCTGCCCTGTGGACAAAGCTTTCTTTTATGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAAAAATCTTCAGAAACGTaGAATTCCATCACAGCCCCA +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQKSSET*NSITAP
Trigger: TGGGGCTGTGATGGAATTTCACGTTTCTGAAGATTT...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATCCGGTCCTCATCTTTaGTGGAGTCGTAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLSGPHL*WSRNRN
Trigger: ATTCCTGTTACGACTCCATCAAAGATGAGGACCGGA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAACTGAACAAGTGTTCTaGTCCAGCTTCAGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQTEQVF*SSFSRV
Trigger: CACCCTGCTGAAGCTGGAGCAGAACACTTGTTCAGT...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTCACCATCAGTCCCCTTaGAATGTCCATGGACATATG +
Preference number: 4 (lower is better)
Translates to: GITVQDLTDNFSNGPPISHHQSP*NVHGHM
Trigger: CATATGTCCATGGACATTGCAAGGGGACTGATGGTG...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATACACCATCAGTCCCCTTaGAATGTCCATGGACATATG +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIHHQSP*NVHGHM
Trigger: CATATGTCCATGGACATTGCAAGGGGACTGATGGTG...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTCGCTTTCTAACCACTaGGGAGCCTCTTCTCTGCTA +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSSLSNH*GASSLL
Trigger: TAGCAGAGAAGAGGCTCCTCAGTGGTTAGAAAGCGA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCACTGAACAAGTGTTCTaGTCCAGCTTCAGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSTEQVF*SSFSRV
Trigger: CACCCTGCTGAAGCTGGAGCAGAACACTTGTTCAGT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCATCCATGTTCCACACTaGAATGCCACCATCTGCCGA +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSIHVPH*NATICR
Trigger: TCGGCAGATGGTGGCATTGCAGTGTGGAACATGGAT...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCGAGAAGAGTAACCGTTaGATAGGGTCCCACCAAAGG +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSEKSNR*IGSHQR
Trigger: CCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTC...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATCACAAACTCGAACCTaGAACTCAAAACCCATGACG +
Preference number: 4 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNISQTRT*NSKPMT
Trigger: CGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATCACAAACTCGAACCTaGAACTCAAAACCCATGACG +
Preference number: 4 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLSQTRT*NSKPMT
Trigger: CGTCATGGGTTTTGAGTTCCAGGTTCGAGTTTGTGA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAACCCTTGCAATGTCCATaGACATATGGGAAATGTTAT +
Preference number: 4 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQPLQCP*TYGKCY
Trigger: ATAACATTTCCCATATGTCCATGGACATTGCAAGGG...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp GGGCATAACTTGCTACCATATAACAAGGGCTTGGTCTaGGGACTACAAACAAATGTATCAGTTAGCAAGACT +
Preference number: 4 (lower is better)
Translates to: GHNLLPYNKGLV*GLQTNVSVSKT
Trigger: AGTCTTGCTAACTGATACATTTGTTTGTAGTCCCAAGACCAAGCCCTTGTTATATGGTAGCAAGTTATGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR TCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTCCGGTCCTCATCTTTaGTGGAGTCGTAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSSGPHL*WSRNRN
Trigger: ATTCCTGTTACGACTCCATCAAAGATGAGGACCGGA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR GCA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCCACCATCAGTCCCCTTaGAATGTCCATGGACATATG +
Preference number: 4 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSHHQSP*NVHGHM
Trigger: CATATGTCCATGGACATTGCAAGGGGACTGATGGTG...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp AGTTTTGCTGAGGAAATTCTACTCCTTAGGAGTCCGTaGTGGACAGACCTTTTAGACAATTTCCACAAATAC +
Preference number: 4 (lower is better)
Translates to: SFAEEILLLRSP*WTDLLDNFHKY
Trigger: GTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAGGAGTAGAATTTCCTCAGCAAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp TCCTACTCTATGGAAACACAGTTGTACAAGGACACATaGACTTACTTAATGTCACCTTTTGCTTCCCAAGTC +
Preference number: 4 (lower is better)
Translates to: SYSMETQLYKDT*TYLMSPFASQV
Trigger: GACTTGGGAAGCAAAAGGTGACATTAAGTAAGTCAATGTGTCCTTGTACAACTGTGTTTCCATAGAGTAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CCA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAACCCTTGCAATGTCCATaGACATATGGGAAATGTTAT +
Preference number: 4 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQPLQCP*TYGKCY
Trigger: ATAACATTTCCCATATGTCCATGGACATTGCAAGGG...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp AACAGACACTTGCAGAAGTCAGCATATATTACTTATTaGTTAAGCCTCCCATGTAGAATGAGCAGATCACTG +
Preference number: 4 (lower is better)
Translates to: NRHLQKSAYITY*LSLPCRMSRSL
Trigger: CAGTGATCTGCTCATTCTACATGGGAGGCTTAACAAATAAGTAATATATGCTGACTTCTGCAAGTGTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
3UTR CAA 72 bp TCACTTTATTACATACTAGATCTAAGTTCAAGACTCTaGTCTAACACCCTCTACTTCTTGATCCTTGTCTGT +
Preference number: 4 (lower is better)
Translates to: SLYYILDLSSRL*SNTLYFLILVC
Trigger: ACAGACAAGGATCAAGAAGTAGAGGGTGTTAGACAAGAGTCTTGAACTTAGATCTAGTATGTAATAAAGTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp CCATGTTCCACACTGCAATGCCACCATCTGCCGAGCAGGAGACGAGCTGCCTCGATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCG +
Preference number: 5 (lower is better)
Translates to: PCSTLQCHHLPSRRRAASITPSS*GMSSAA
Trigger: CGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGAT...CGAGGCAGCTCGTCTCCTGCTCGGCAGATGGTGGCATTGCAGTGTGGAACATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CAA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTGGTGGCCCTCTATCTaGCTCAGCAGCACCGGGCGG +
Preference number: 5 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHWWPSI*LSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCG +
Preference number: 5 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVITPSS*GMSSAA
Trigger: CGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGAT...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCG +
Preference number: 5 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKITPSS*GMSSAA
Trigger: CGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGAT...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTCTGTCATGGTGGCCTaGAAGGAGGAGTGTCCGGCC +
Preference number: 5 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHSVMVA*KEECPA
Trigger: GGCCGGACACTCCTCCTTCAAGGCCACCATGACAGA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS GCA 90 bp TGGTGGGCATCACAGCCCCATTATCCTGGCCCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCATGGCAGAGCAAGGGGAGGCCATTG +
Preference number: 5 (lower is better)
Translates to: WWASQPHYPGPQISA*CRGGMPWQSKGRPL
Trigger: CAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS CCA 90 bp CACTCGGCAGCCAGGCTGAAGATGATAGCAGACACGCGGTTCTGGTaGGCATCACAGCCCCATTATCCTGGCCCACAAATATCCGCCTGC +
Preference number: 5 (lower is better)
Translates to: HSAARLKMIADTRFW*ASQPHYPGPQISAC
Trigger: GCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTGTCTGCTATCATCTTCAGCCTGGCTGCCGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS CCA 90 bp ACCCACTCGGCAGCCAGGCTGAAGATGATAGCAGACACGCGGTTCTaGTGGGCATCACAGCCCCATTATCCTGGCCCACAAATATCCGCC +
Preference number: 5 (lower is better)
Translates to: THSAARLKMIADTRF*WASQPHYPGPQISA
Trigger: GGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTGTCTGCTATCATCTTCAGCCTGGCTGCCGAGTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CAA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATGGTGGCCCTCTATCTaGCTCAGCAGCACCGGGCGG +
Preference number: 5 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKWWPSI*LSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GAGAAGAGTAACCGTTGGATAGGGTCCCACCAAAGGCAGGCGATGCTACCTTCATGGTGGCCCTCTATCTaGCTCAGCAGCACCGGGCGG +
Preference number: 5 (lower is better)
Translates to: EKSNRWIGSHQRQAMLPSWWPSI*LSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCA...TGAAGGTAGCATCGCCTGCCTTTGGTGGGACCCTATCCAACGGTTACTCTTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CAA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATGTGGAGAAAATCCAGTaGCCAGGCTGCAGCCCACCA +
Preference number: 5 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHVEKIQ*PGCSPP
Trigger: TGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCAC...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS GCA 90 bp GGTGGTATGCCATGGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGCTGTCTCTTTTCAGCCATACTCGGA +
Preference number: 5 (lower is better)
Translates to: GGMPWQSKGRPLCGR*WASTGRCLFSAILG
Trigger: TCCGAGTATGGCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCATCTACCACACAATGGCCTCCCCTTGCTCTGCCATGGCATACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS GCA 90 bp CCCATTATCCTGGCCCACAAATATCCGCCTGCTGTCGTGGTGGTATaGCATGGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATGCTGGG +
Preference number: 5 (lower is better)
Translates to: PIILAHKYPPAVVVV*HGRARGGHCVVDAG
Trigger: CCCAGCATCTACCACACAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 90 bp GGTATGCCATGGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATGCTaGGCCAGTACTGGCCGCTGTCTCTTTTCAGCCATACTCGGATGG +
Preference number: 5 (lower is better)
Translates to: GMPWQSKGRPLCGRC*ASTGRCLFSAILGW
Trigger: CCATCCGAGTATGGCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCATCTACCACACAATGGCCTCCCCTTGCTCTGCCATGGCATACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 90 bp AGCATATTCCCGCTGCGCGTGCACATCCAGCTCACACACTTGTCGTaGCCAGTGCTGATCACCCACTCGGCAGCCAGGCTGAAGATGATA +
Preference number: 5 (lower is better)
Translates to: SIFPLRVHIQLTHLS*PVLITHSAARLKMI
Trigger: TATCATCTTCAGCCTGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
CDS CCA 90 bp GATAGCAGACACGCGGTTCTGGTGGGCATCACAGCCCCATTATCCTaGCCCACAAATATCCGCCTGCTGTCGTGGTGGTATGCCATGGCA +
Preference number: 5 (lower is better)
Translates to: DSRHAVLVGITAPLS*PTNIRLLSWWYAMA
Trigger: TGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTGTCTGCTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTCTGTCATGGTGGCCTaGAAGGAGGAGTGTCCGGCC +
Preference number: 5 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVSVMVA*KEECPA
Trigger: GGCCGGACACTCCTCCTTCAAGGCCACCATGACAGA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS CCA 90 bp CACTCTGAAGGATACTGCAAACAGGAAGCCCACGACGAGAAGAAGTaGCGGCCAAGCATATTCCCGCTGCGCGTGCACATCCAGCTCACA +
Preference number: 5 (lower is better)
Translates to: HSEGYCKQEAHDEKK*RPSIFPLRVHIQLT
Trigger: TGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCTCGTCGTGGGCTTCCTGTTTGCAGTATCCTTCAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
CDS-3UTR CAA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATCTGTCATGGTGGCCTaGAAGGAGGAGTGTCCGGCC +
Preference number: 5 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKSVMVA*KEECPA
Trigger: GGCCGGACACTCCTCCTTCAAGGCCACCATGACAGA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTGTGGAGAAAATCCAGTaGCCAGGCTGCAGCCCACCA +
Preference number: 5 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVVEKIQ*PGCSPP
Trigger: TGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCAC...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS GCA 90 bp GAAATTCCATCACAGCCCCATTATCCTGGCCCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCATGGCAGAGCAAGGGGAGGCCATTG +
Preference number: 5 (lower is better)
Translates to: EIPSQPHYPGPQISA*CRGGMPWQSKGRPL
Trigger: CAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGGAATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
CDS-3UTR CAA 90 bp CAGGGGCCTCAAGGACCCTCTCGGGAGACTCCATGTGTGCTCATGGGTTTGCATTCACCATCAGTCCCCTaGCAATGTCCATGGACATAT +
Preference number: 5 (lower is better)
Translates to: QGPQGPSRETPCVLMGLHSPSVP*QCPWTY
Trigger: ATATGTCCATGGACATTGCAAGGGGACTGATGGTGA...ATGCAAACCCATGAGCACACATGGAGTCTCCCGAGAGGGTCCTTGAGGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCG +
Preference number: 5 (lower is better)
Translates to: GITVQDLTDNFSNGPPISITPSS*GMSSAA
Trigger: CGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGAT...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTCAAGCCCAGGGTCTTaGTGTCCCACATCTGTTTTA +
Preference number: 5 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVSSPGS*CPTSVL
Trigger: TAAAACAGATGTGGGACACAAAGACCCTGGGCTTGA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTAGGCCTTTCCTACCGGCAAGCAGCAGGCTCCCACGGTTCTACTGGAATAGTTTCACCATCAGTCCCCTaGCAATGTCCATGGACATAT +
Preference number: 5 (lower is better)
Translates to: VGLSYRQAAGSHGSTGIVSPSVP*QCPWTY
Trigger: ATATGTCCATGGACATTGCAAGGGGACTGATGGTGA...AACTATTCCAGTAGAACCGTGGGAGCCTGCTGCTTGCCGGTAGGAAAGGCCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACGTGGAGAAAATCCAGTaGCCAGGCTGCAGCCCACCA +
Preference number: 5 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNVEKIQ*PGCSPP
Trigger: TGGTGGGCTGCAGCCTGGCAACTGGATTTTCTCCAC...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATGGTGGCCCTCTATCTaGCTCAGCAGCACCGGGCGG +
Preference number: 5 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLWWPSI*LSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATGGTGGCCCTCTATCTaGCTCAGCAGCACCGGGCGG +
Preference number: 5 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIWWPSI*LSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp CGGTTCTACTGGAATAGTTCATGTGCTACTTTCTGTTTACACAAACACACACAAATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCG +
Preference number: 5 (lower is better)
Translates to: RFYWNSSCATFCLHKHTQITPSS*GMSSAA
Trigger: CGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGAT...TTGTGTGTGTTTGTGTAAACAGAAAGTAGCACATGAACTATTCCAGTAGAACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATC +
Preference number: 5 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNIQLTH*SWPVLI
Trigger: GATCAGCACTGGCCACGACAAGTGTGTGAGCTGGAT...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp TGGCCTCGAACTCATAAAACTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATTCCTTCATGAAATGTaGCTAGAGAAGTCCGGTCCT +
Preference number: 5 (lower is better)
Translates to: WPRTHKTACLCLPSAGIKFLHEM*LEKSGP
Trigger: AGGACCGGACTTCTCTAGCAACATTTCATGAAGGAA...TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGTTTTATGAGTTCGAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAAATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATC +
Preference number: 5 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQIQLTH*SWPVLI
Trigger: GATCAGCACTGGCCACGACAAGTGTGTGAGCTGGAT...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTCTGTCATGGTGGCCTaGAAGGAGGAGTGTCCGGCC +
Preference number: 5 (lower is better)
Translates to: GITVQDLTDNFSNGPPISSVMVA*KEECPA
Trigger: GGCCGGACACTCCTCCTTCAAGGCCACCATGACAGA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGTCACAGCTACAACATAATACAGAAGCGCCAGAGTACTTCTGAGGGGCATAACCTACCTTCATGTCCCTaGAGGGTCGTGATAACTGAA +
Preference number: 5 (lower is better)
Translates to: GHSYNIIQKRQSTSEGHNLPSCP*RVVITE
Trigger: TTCAGTTATCACGACCCTCAAGGGACATGAAGGTAG...GTTATGCCCCTCAGAAGTACTCTGGCGCTTCTGTATTATGTTGTAGCTGTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATAATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATC +
Preference number: 5 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIIQLTH*SWPVLI
Trigger: GATCAGCACTGGCCACGACAAGTGTGTGAGCTGGAT...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTAATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATC +
Preference number: 5 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLIQLTH*SWPVLI
Trigger: GATCAGCACTGGCCACGACAAGTGTGTGAGCTGGAT...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp CTTAGGAGTCCGTTGTGGACAGACCTTTTAGACAATTTCCACAAATACCCCCAATTCCTTCATGAAATGTaGCTAGAGAAGTCCGGTCCT +
Preference number: 5 (lower is better)
Translates to: LRSPLWTDLLDNFHKYPQFLHEM*LEKSGP
Trigger: AGGACCGGACTTCTCTAGCAACATTTCATGAAGGAA...TTGGGGGTATTTGTGGAAATTGTCTAAAAGGTCTGTCCACAACGGACTCCTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTCTACCTTCATGTCCCTaGAGGGTCGTGATAACTGAA +
Preference number: 5 (lower is better)
Translates to: GITVQDLTDNFSNGPPISLPSCP*RVVITE
Trigger: TTCAGTTATCACGACCCTCAAGGGACATGAAGGTAG...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTACTACCTTCATGTCCCTaGAGGGTCGTGATAACTGAA +
Preference number: 5 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLLPSCP*RVVITE
Trigger: TTCAGTTATCACGACCCTCAAGGGACATGAAGGTAG...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GTCTATTGCTGCCCACTAGGCAGCAAGTTAAAACTGGGACATAGTAAACAATTATCAAGCCCAGGGTCTTaGTGTCCCACATCTGTTTTA +
Preference number: 5 (lower is better)
Translates to: VYCCPLGSKLKLGHSKQLSSPGS*CPTSVL
Trigger: TAAAACAGATGTGGGACACAAAGACCCTGGGCTTGA...TAATTGTTTACTATGTCCCAGTTTTAACTTGCTGCCTAGTGGGCAGCAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTCACCATCAGTCCCCTaGCAATGTCCATGGACATAT +
Preference number: 5 (lower is better)
Translates to: GITVQDLTDNFSNGPPISSPSVP*QCPWTY
Trigger: ATATGTCCATGGACATTGCAAGGGGACTGATGGTGA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp GGGATTACTGTACAAGACCTGACTGATAATTTTAGCAATGGGCCACCAATTTCTTTCCTTCATGAAATGTaGCTAGAGAAGTCCGGTCCT +
Preference number: 5 (lower is better)
Translates to: GITVQDLTDNFSNGPPISFLHEM*LEKSGP
Trigger: AGGACCGGACTTCTCTAGCAACATTTCATGAAGGAA...AGAAATTGGTGGCCCATTGCTAAAATTATCAGTCAGGTCTTGTACAGTAATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp ATTCAGCCTGCATTCCCTCCTAAGGTCCCTCCCTCTAATTCTTCTTTAAATATATTCCTTCATGAAATGTaGCTAGAGAAGTCCGGTCCT +
Preference number: 5 (lower is better)
Translates to: IQPAFPPKVPPSNSSLNIFLHEM*LEKSGP
Trigger: AGGACCGGACTTCTCTAGCAACATTTCATGAAGGAA...TATATTTAAAGAAGAATTAGAGGGAGGGACCTTAGGAGGGAATGCAGGCTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTCAAGCCCAGGGTCTTaGTGTCCCACATCTGTTTTA +
Preference number: 5 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSSSPGS*CPTSVL
Trigger: TAAAACAGATGTGGGACACAAAGACCCTGGGCTTGA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS-3UTR CAA 90 bp TCAATAATCTGCTCACAATTAACAATTAAGCAACAGACACTTGCAGAAGTCAGCTCACCATCAGTCCCCTaGCAATGTCCATGGACATAT +
Preference number: 5 (lower is better)
Translates to: SIICSQLTIKQQTLAEVSSPSVP*QCPWTY
Trigger: ATATGTCCATGGACATTGCAAGGGGACTGATGGTGA...GCTGACTTCTGCAAGTGTCTGTTGCTTAATTGTTAATTGTGAGCAGATTATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
CDS CCA 72 bp TCCTTGGGGATGAGCAGCGCGGCGGTGACGGCGTCCTaGTGGCCCTCTATCTTGCTCAGCAGCACCGGGCGG +
Preference number: 6 (lower is better)
Translates to: SLGMSSAAVTAS*WPSILLSSTGR
Trigger: CCGCCCGGTGCTGCTGAGCAAGATAGAGGGCCACCAGGACGCCGTCACCGCCGCGCTGCTCATCCCCAAGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000125641.2
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CAA 72 bp GTTCTGTCCTCGCTAGCGGTGATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCGGTGACGGCGTCCTGG +
Preference number: 6 (lower is better)
Translates to: VLSSLAVITPSS*GMSSAAVTASW
Trigger: CCAGGACGCCGTCACCGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGATCACCGCTAGCGAGGACAGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000125641.2
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CAA 90 bp ACTCGGATGGTTCTGTCCTCGCTAGCGGTGATCACGCCGTCCTCCTaGGGGATGAGCAGCGCGGCGGTGACGGCGTCCTGGTGGCCCTCT +
Preference number: 6 (lower is better)
Translates to: TRMVLSSLAVITPSS*GMSSAAVTASWWPS
Trigger: AGAGGGCCACCAGGACGCCGTCACCGCCGCGCTGCTCATCCCCAAGGAGGACGGCGTGATCACCGCTAGCGAGGACAGAACCATCCGAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000125641.2
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp CCGCTGCGCGTGCACATCCAGCTCACACACTTGTCGTaGCCAGTGCTGATCACCCACTCGGCAGCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: PLRVHIQLTHLS*PVLITHSAARL
Trigger: CAGCCTGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
CDS CAA 90 bp CGGCCAAGCATATTCCCGCTGCGCGTGCACATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATCACCCACTCGGCAGCCAGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: RPSIFPLRVHIQLTH*SWPVLITHSAARLK
Trigger: CTTCAGCCTGGCTGCCGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATATGCTTGGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
CDS CAA 72 bp ATATTCCCGCTGCGCGTGCACATCCAGCTCACACACTaGTCGTGGCCAGTGCTGATCACCCACTCGGCAGCC +
Preference number: 6 (lower is better)
Translates to: IFPLRVHIQLTH*SWPVLITHSAA
Trigger: GGCTGCCGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGCAGCGGGAATAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
CDS GCA 72 bp CCATGGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATaGTGGGCCAGTACTGGCCGCTGTCTCTTTTCAGCC +
Preference number: 6 (lower is better)
Translates to: PWQSKGRPLCGR*WASTGRCLFSA
Trigger: GGCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCATCTACCACACAATGGCCTCCCCTTGCTCTGCCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000125641.2
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS GCA 72 bp CTGGCCCACAAATATCCGCCTGCTGTCGTGGTGGTATaGCATGGCAGAGCAAGGGGAGGCCATTGTGTGGTA +
Preference number: 6 (lower is better)
Translates to: LAHKYPPAVVVV*HGRARGGHCVV
Trigger: TACCACACAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS GCA 72 bp TCACAGCCCCATTATCCTGGCCCACAAATATCCGCCTaGTGTCGTGGTGGTATGCCATGGCAGAGCAAGGGG +
Preference number: 6 (lower is better)
Translates to: SQPHYPGPQISA*CRGGMPWQSKG
Trigger: CCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp GGATACTGCAAACAGGAAGCCCACGACGAGAAGAAGTaGCGGCCAAGCATATTCCCGCTGCGCGTGCACATC +
Preference number: 6 (lower is better)
Translates to: GYCKQEAHDEKK*RPSIFPLRVHI
Trigger: GATGTGCACGCGCAGCGGGAATATGCTTGGCCGCCACTTCTTCTCGTCGTGGGCTTCCTGTTTGCAGTATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
CDS CCA 72 bp CACGCGGTTCTGGTGGGCATCACAGCCCCATTATCCTaGCCCACAAATATCCGCCTGCTGTCGTGGTGGTAT +
Preference number: 6 (lower is better)
Translates to: HAVLVGITAPLS*PTNIRLLSWWY
Trigger: ATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS CCA 72 bp GCAGCCAGGCTGAAGATGATAGCAGACACGCGGTTCTaGTGGGCATCACAGCCCCATTATCCTGGCCCACAA +
Preference number: 6 (lower is better)
Translates to: AARLKMIADTRF*WASQPHYPGPQ
Trigger: TTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTGTCTGCTATCATCTTCAGCCTGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7
CDS CCA 72 bp TGGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATGCTaGGCCAGTACTGGCCGCTGTCTCTTTTCAGCCATA +
Preference number: 6 (lower is better)
Translates to: WQSKGRPLCGRC*ASTGRCLFSAI
Trigger: TATGGCTGAAAAGAGACAGCGGCCAGTACTGGCCCAGCATCTACCACACAATGGCCTCCCCTTGCTCTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000125641.2
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp CCACAAATATCCGCCTGCTGTCGTGGTGGTATGCCATaGCAGAGCAAGGGGAGGCCATTGTGTGGTAGATGC +
Preference number: 6 (lower is better)
Translates to: PQISACCRGGMP*QSKGRPLCGRC
Trigger: GCATCTACCACACAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp TTATCCTGGCCCACAAATATCCGCCTGCTGTCGTGGTaGTATGCCATGGCAGAGCAAGGGGAGGCCATTGTG +
Preference number: 6 (lower is better)
Translates to: LSWPTNIRLLSW*YAMAEQGEAIV
Trigger: CACAATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp CCATTATCCTGGCCCACAAATATCCGCCTGCTGTCGTaGTGGTATGCCATGGCAGAGCAAGGGGAGGCCATT +
Preference number: 6 (lower is better)
Translates to: PLSWPTNIRLLS*WYAMAEQGEAI
Trigger: AATGGCCTCCCCTTGCTCTGCCATGGCATACCACCACGACAGCAGGCGGATATTTGTGGGCCAGGATAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000048820.14
ENSMUST00000113510.8
ENSMUST00000113511.8
ENSMUST00000113512.8
ENSMUST00000113513.8
ENSMUST00000113514.8
ENSMUST00000113515.8
ENSMUST00000143368.8
ENSMUST00000187005.7
CDS CCA 72 bp GCCAGGCTGAAGATGATAGCAGACACGCGGTTCTGGTaGGCATCACAGCCCCATTATCCTGGCCCACAAATA +
Preference number: 6 (lower is better)
Translates to: ARLKMIADTRFW*ASQPHYPGPQI
Trigger: TATTTGTGGGCCAGGATAATGGGGCTGTGATGCCCACCAGAACCGCGTGTCTGCTATCATCTTCAGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187005.7