Pregenerated sensors for WASHC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020056Ensembl transcript IDs: ENSMUST00000020248.16, ENSMUST00000171151.9, ENSMUST00000182183.8, ENSMUST00000182299.8, ENSMUST00000182619.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TGCCAGTTTTCTGTAGACCAGGCTAGCCTCGAACTCTaGAATCCTCCTCTCTCTGCCTCCAAAGTGCTCGGA | + |
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Preference number: 3 (lower is better) Translates to: CQFSVDQASLEL*NPPLSASKVLG Trigger: TCCGAGCACTTTGGAGGCAGAGAGAGGAGGATTTCAGAGTTCGAGGCTAGCCTGGTCTACAGAAAACTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182299.8 |
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| 3UTR TCA 72 bp | GGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTaGCAAAGCTTGAACATGGTCACACACAGTATACAG | + |
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Preference number: 3 (lower is better) Translates to: GLSLHMRNQVLG*QSLNMVTHSIQ Trigger: CTGTATACTGTGTGTGACCATGTTCAAGCTTTGTCACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | CCTAGAAGGAAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGCTCCAGAGTCTTGCGTaGTATTCTGCTGCGTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: PRRKVRSQFTHEEPGLGVLQSLA*YSAAFA Trigger: AGCAAACGCAGCAGAATAGCACGCAAGACTCTGGAG...CACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTTCCTTCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | CCTAGAAGGAAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGTGTGCTCCAGAGTCTTaGGTGCTATTCTGCTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PRRKVRSQFTHEEPGLGVCAPES*VLFCCV Trigger: AACGCAGCAGAATAGCACGCAAGACTCTGGAGCACA...CACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTTCCTTCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR TCA 90 bp | CCTAGAAGGAAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGACACTTGAACCATCTTaGGGTATCTGGCATACCGTG | + |
|
Preference number: 4 (lower is better) Translates to: PRRKVRSQFTHEEPGLGVTLEPS*GIWHTV Trigger: CACGGTATGCCAGATACCTCAAGATGGTTCAAGTGT...CACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTTCCTTCTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | AAATCCTCCTCTCTCTGCCTCCAAAGTGCTCGGATTAAAGGCGTGTGCCAACACAACCGGTTGAGAAACTaGACAGTGTGCACCACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: KSSSLCLQSARIKGVCQHNRLRN*TVCTTN Trigger: GTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTT...GTGTTGGCACACGCCTTTAATCCGAGCACTTTGGAGGCAGAGAGAGGAGGATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182299.8 |
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| CDS-3UTR GCA 90 bp | ACCAGGCTAGCCTCGAACTCTGAAATCCTCCTCTCTCTGCCTCCAAAGTGCTCGTTACTCCTCACAAACTaGGGAAAACCGGTTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: TRLASNSEILLSLPPKCSLLLTN*GKPVEK Trigger: TTTCTCAACCGGTTTTCCGCAGTTTGTGAGGAGTAA...CGAGCACTTTGGAGGCAGAGAGAGGAGGATTTCAGAGTTCGAGGCTAGCCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182299.8 |
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| CDS-3UTR CCA 90 bp | ACCAGGCTAGCCTCGAACTCTGAAATCCTCCTCTCTCTGCCTCCAAAGTGCTCGTTTCTGTTGAATAGCTaGCACCTTGGTCAGGTCTAT | + |
|
Preference number: 4 (lower is better) Translates to: TRLASNSEILLSLPPKCSFLLNS*HLGQVY Trigger: ATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAA...CGAGCACTTTGGAGGCAGAGAGAGGAGGATTTCAGAGTTCGAGGCTAGCCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182299.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCCACTTGAACCATCTTaGGGTATCTGGCATACCGTG | + |
|
Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEPLEPS*GIWHTV Trigger: CACGGTATGCCAGATACCTCAAGATGGTTCAAGTGG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCGGGTCCAGTCCTTCTaGGATCATCTTGTCTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGERVQSF*DHLVSD Trigger: ATCAGAGACAAGATGATCTCAGAAGGACTGGACCCG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCCGGAGAGAAAGGTCTaGCAGTTTCTCCTCACAAAC | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEPERKV*QFLLTN Trigger: GTTTGTGAGGAGAAACTGGCAGACCTTTCTCTCCGG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTCCAGAGTCTTGCGTaGTATTCTGCTGCGTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGELQSLA*YSAAFA Trigger: AGCAAACGCAGCAGAATAGCACGCAAGACTCTGGAG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020248.16 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGTGTGCTCCAGAGTCTTaGGTGCTATTCTGCTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGECAPES*VLFCCV Trigger: AACGCAGCAGAATAGCACGCAAGACTCTGGAGCACA...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020248.16 |
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| CDS-3UTR TCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGACCACTTGAACCATCTTaGGGTATCTGGCATACCGTG | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRPLEPS*GIWHTV Trigger: CACGGTATGCCAGATACCTCAAGATGGTTCAAGTGG...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGACTGGAACACCCACTTaGACCATCTTGAGGTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGETGTPT*TILRYL Trigger: CAGATACCTCAAGATGGTTCAAGTGGGTGTTCCAGT...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR TCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGACGGGTCCAGTCCTTCTaGGATCATCTTGTCTCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRRVQSF*DHLVSD Trigger: ATCAGAGACAAGATGATCTCAGAAGGACTGGACCCG...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | GGTCACACACAGTATACAGCAAAACTAAGAGGCTCCACCAAGTTCCATTTCAGGAACCGGTTGAGAAACTaGACAGTGTGCACCACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: GHTQYTAKLRGSTKFHFRNRLRN*TVCTTN Trigger: GTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTT...CCTGAAATGGAACTTGGTGGAGCCTCTTAGTTTTGCTGTATACTGTGTGTGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | CTTGAACATGGTCACACACAGTATACAGCAAAACTAAGAGGCTCCACCAAGTTCCCGGAGAGAAAGGTCTaGCAGTTTCTCCTCACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LEHGHTQYTAKLRGSTKFPERKV*QFLLTN Trigger: GTTTGTGAGGAGAAACTGGCAGACCTTTCTCTCCGG...GAACTTGGTGGAGCCTCTTAGTTTTGCTGTATACTGTGTGTGACCATGTTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCATCTTGTCTCTGATTaGCATCACTGGAACACCCAC | + |
|
Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEHLVSD*HHWNTH Trigger: GTGGGTGTTCCAGTGATGGCAATCAGAGACAAGATG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | GGTCACACACAGTATACAGCAAAACTAAGAGGCTCCACCAAGTTCCATTTCAGGCAAGATGCAAGGTACTaGTTCCTGTTCTGTGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: GHTQYTAKLRGSTKFHFRQDARY*FLFCGQ Trigger: CTGTCCACAGAACAGGAAGCAGTACCTTGCATCTTG...CCTGAAATGGAACTTGGTGGAGCCTCTTAGTTTTGCTGTATACTGTGTGTGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR GCA 90 bp | CCTAGAAGGAAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGAAAACAACTGCTTTCTaGAGTGTTTCCACATCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PRRKVRSQFTHEEPGLGVKTTAF*SVSTSQ Trigger: TTGGGATGTGGAAACACTGCAGAAAGCAGTTGTTTT...CACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTTCCTTCTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR CCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGGTGTGCACCACAAACTaGTTTAGAAAGGCCACGGTT | + |
|
Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEVCTTN*FRKATV Trigger: AACCGTGGCCTTTCTAAACCAGTTTGTGGTGCACAC...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR TCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGAACTGGAACACCCACTTaGACCATCTTGAGGTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRTGTPT*TILRYL Trigger: CAGATACCTCAAGATGGTTCAAGTGGGTGTTCCAGT...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGAGATCATCTTGTCTCTaGTTGCCATCACTGGAACAC | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGERSSCL*LPSLEH Trigger: GTGTTCCAGTGATGGCAATCAGAGACAAGATGATCT...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGAAACCGGTTGAGAAACTaGACAGTGTGCACCACAAAC | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRNRLRN*TVCTTN Trigger: GTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTT...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGACATCTTGTCTCTGATTaGCATCACTGGAACACCCAC | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRHLVSD*HHWNTH Trigger: GTGGGTGTTCCAGTGATGGCAATCAGAGACAAGATG...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGGTGCTATTCTGCGTTTaGTCCGAAGTGGTTTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEVLFCV*SEVVSE Trigger: TTCTGAAACCACTTCGGAGCAAACGCAGAATAGCAC...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182183.8 |
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| CDS-3UTR CCA 90 bp | AAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGACAAAGCTTTTTCTGTTGAATAGCTaGCACCTTGGTCAGGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: KVRSQFTHEEPGLGVTKLFLLNS*HLGQVY Trigger: ATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAA...AAGCTTTGTCACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR CCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGTCTGATTGCCATCACTaGAACACCCACTTGAACCAT | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGESDCHH*NTHLNH Trigger: ATGGTTCAAGTGGGTGTTCCAGTGATGGCAATCAGA...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CCA 90 bp | GTGACAAAGCTTGAACATGGTCACACACAGTATACAGCAAAACTAAGAGGCTCCCTGCTTCCTGTTCTGTaGACAGGAACACTTGAACCA | + |
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Preference number: 4 (lower is better) Translates to: VTKLEHGHTQYTAKLRGSLLPVL*TGTLEP Trigger: TGGTTCAAGTGTTCCTGTCCACAGAACAGGAAGCAG...GGAGCCTCTTAGTTTTGCTGTATACTGTGTGTGACCATGTTCAAGCTTTGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR CCA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGTTTCTGTTGAATAGCTaGCACCTTGGTCAGGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: RERLGRYAVAFGDVYHGEFLLNS*HLGQVY Trigger: ATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAA...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGATCTGATTGCCATCACTaGAACACCCACTTGAACCAT | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRSDCHH*NTHLNH Trigger: ATGGTTCAAGTGGGTGTTCCAGTGATGGCAATCAGA...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGATTTCTCCTCACAAACTaGGGAAAACCGGTTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRFLLTN*GKPVEK Trigger: TTTCTCAACCGGTTTTCCGCAGTTTGTGAGGAGAAA...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR GCA 90 bp | GTGACAAAGCTTGAACATGGTCACACACAGTATACAGCAAAACTAAGAGGCTCCTTTCTCCTCACAAACTaGGGAAAACCGGTTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: VTKLEHGHTQYTAKLRGSFLLTN*GKPVEK Trigger: TTTCTCAACCGGTTTTCCGCAGTTTGTGAGGAGAAA...GGAGCCTCTTAGTTTTGCTGTATACTGTGTGTGACCATGTTCAAGCTTTGTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR CCA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGATTTCTGTTGAATAGCTaGCACCTTGGTCAGGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: LGRYAVAFGDVYHGELDRFLLNS*HLGQVY Trigger: ATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAA...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CAA 90 bp | CCTAGAAGGAAGGTCAGGTCTCAGTTTACACATGAGGAACCAGGTCTTGGGGTGGAGAGTTGTTTCAATTaGCTGAATCCGGAGAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: PRRKVRSQFTHEEPGLGVESCFN*LNPERK Trigger: CTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTC...CACCCCAAGACCTGGTTCCTCATGTGTAAACTGAGACCTGACCTTCCTTCTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171151.9 |
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| CDS-3UTR CAA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCCTTCTGAGATCATCTaGTCTCTGATTGCCATCACT | + |
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Preference number: 5 (lower is better) Translates to: RERLGRYAVAFGDVYHGEPSEII*SLIAIT Trigger: AGTGATGGCAATCAGAGACAAGATGATCTCAGAAGG...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CAA 90 bp | AGAGAAAGGTTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGGAGAGTTGTTTCAATTaGCTGAATCCGGAGAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: RERLGRYAVAFGDVYHGEESCFN*LNPERK Trigger: CTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTC...CTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAACCTTTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CAA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGACCTTCTGAGATCATCTaGTCTCTGATTGCCATCACT | + |
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Preference number: 5 (lower is better) Translates to: LGRYAVAFGDVYHGELDRPSEII*SLIAIT Trigger: AGTGATGGCAATCAGAGACAAGATGATCTCAGAAGG...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS-3UTR CAA 90 bp | TTGGGGAGGTATGCAGTAGCATTTGGTGATGTTTATCACGGAGAGCTAGATAGAGAGAGTTGTTTCAATTaGCTGAATCCGGAGAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: LGRYAVAFGDVYHGELDRESCFN*LNPERK Trigger: CTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTC...TCTATCTAGCTCTCCGTGATAAACATCACCAAATGCTACTGCATACCTCCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020248.16 ENSMUST00000182183.8 |
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| CDS TCA 72 bp | CAAGGTACTGCTTCCTGTTCTGTGGACAGGAACACTTaGACCATCTTGAGGTATCTGGCATACCGTGGATCC | + |
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Preference number: 6 (lower is better) Translates to: QGTASCSVDRNT*TILRYLAYRGS Trigger: GGATCCACGGTATGCCAGATACCTCAAGATGGTTCAAGTGTTCCTGTCCACAGAACAGGAAGCAGTACCTTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171151.9 ENSMUST00000182619.2 |
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| CDS CAA 72 bp | GCAAGGTACTGCTTCCTGTTCTGTGGACAGGAACACTaGAACCATCTTGAGGTATCTGGCATACCGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: ARYCFLFCGQEH*NHLEVSGIPWI Trigger: GATCCACGGTATGCCAGATACCTCAAGATGGTTCAAGTGTTCCTGTCCACAGAACAGGAAGCAGTACCTTGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171151.9 ENSMUST00000182619.2 |
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