RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VXN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067879

Ensembl transcript IDs: ENSMUST00000088666.4

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGACAAAGCACTTGATGCCCAAGTGTCCAGACTATGTTTGGACATaGGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGC +
Preference number: 1 (lower is better)
Translates to: GTKHLMPKCPDYVWT*GSDAQGLKQRWEGS
Trigger: GCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTCCAAACATAGTCTGGACACTTGGGCATCAAGTGCTTTGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR GCA 90 bp ACCTCATCTCCACGCTGTGCTCCAGGTAGCCTCTTCCCAGGCCATTaGAGAGGAAGACGTTTTGCTGATTTCCATCCTTCCCTTTTCCTT +
Preference number: 1 (lower is better)
Translates to: TSSPRCAPGSLFPGH*RGRRFADFHPSLFL
Trigger: AAGGAAAAGGGAAGGATGGAAATCAGCAAAACGTCTTCCTCTGCAATGGCCTGGGAAGAGGCTACCTGGAGCACAGCGTGGAGATGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CCA 90 bp GTCACATACTGCCATCCAGATGCTCTAGTGTCCCAATCTGTAGGTTaGGGACCACAGTGCTTTCTTATCAGAGGGTTTGTAATGGTGAGA +
Preference number: 1 (lower is better)
Translates to: VTYCHPDALVSQSVG*GPQCFLIRGFVMVR
Trigger: TCTCACCATTACAAACCCTCTGATAAGAAAGCACTGTGGTCCCCAACCTACAGATTGGGACACTAGAGCATCTGGATGGCAGTATGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR GCA 90 bp CATCCAGATGCTCTAGTGTCCCAATCTGTAGGTTGGGGACCACAGTaGTTTCTTATCAGAGGGTTTGTAATGGTGAGAAGAGACAATGAT +
Preference number: 1 (lower is better)
Translates to: HPDALVSQSVGWGPQ*FLIRGFVMVRRDND
Trigger: ATCATTGTCTCTTCTCACCATTACAAACCCTCTGATAAGAAAGCACTGTGGTCCCCAACCTACAGATTGGGACACTAGAGCATCTGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR TCA 90 bp ACAGTGCTTTCTTATCAGAGGGTTTGTAATGGTGAGAAGAGACAATaGTGGGAGAATGCTCTCTGGATTAAAGTCACTATACAAAGCTTG +
Preference number: 1 (lower is better)
Translates to: TVLSYQRVCNGEKRQ*WENALWIKVTIQSL
Trigger: CAAGCTTTGTATAGTGACTTTAATCCAGAGAGCATTCTCCCATCATTGTCTCTTCTCACCATTACAAACCCTCTGATAAGAAAGCACTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CCA 90 bp TTGAGCCACAGGAAATTGATTTTCAGCTGTTTCAACCTACAAAAATaGCGATTTCTTCTGGTTTCATCTATGCATAATCTCTCTCCCTCT +
Preference number: 1 (lower is better)
Translates to: LSHRKLIFSCFNLQK*RFLLVSSMHNLSPS
Trigger: AGAGGGAGAGAGATTATGCATAGATGAAACCAGAAGAAATCGCCATTTTTGTAGGTTGAAACAGCTGAAAATCAATTTCCTGTGGCTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR TCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCAGATGCTCAGACCTGGTaGCAGTCCCACAAGCTGCTG +
Preference number: 2 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSDAQTW*QSHKLL
Trigger: CAGCAGCTTGTGGGACTGTCACCAGGTCTGAGCATC...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCAAACCTCTTTACGTGTTaGGGTCCCTGTTCTCTGCAC +
Preference number: 2 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSNLFTC*GPCSLH
Trigger: GTGCAGAGAACAGGGACCCCAACACGTAAAGAGGTT...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 90 bp GTTCACTGGGACAAAGCACTTGATGCCCAAGTGTCCAGACTATGTTaGGACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGA +
Preference number: 2 (lower is better)
Translates to: VHWDKALDAQVSRLC*DMRVRCSGSKAEVG
Trigger: TCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTCCAAACATAGTCTGGACACTTGGGCATCAAGTGCTTTGTCCCAGTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCAGGATGTTACTTTCCATaGCCCATGTCAGAGTATAAG +
Preference number: 2 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSGCYFP*PMSEYK
Trigger: CTTATACTCTGACATGGGGCATGGAAAGTAACATCC...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 90 bp GTGCTCCAGGTAGCCTCTTCCCAGGCCATTGCAGAGGAAGACGTTTaGCTGATTTCCATCCTTCCCTTTTCCTTATTTTGTGTGAAGGAG +
Preference number: 2 (lower is better)
Translates to: VLQVASSQAIAEEDV*LISILPFSLFCVKE
Trigger: CTCCTTCACACAAAATAAGGAAAAGGGAAGGATGGAAATCAGCAAAACGTCTTCCTCTGCAATGGCCTGGGAAGAGGCTACCTGGAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp CAGTCCCACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATGCTCTAGTGTCCCGAACCTTGACCAATaGAAGGTGCCCATGAAATGT +
Preference number: 2 (lower is better)
Translates to: QSHKLLLSHILPSRCSSVPNLDQ*KVPMKC
Trigger: ACATTTCATGGGCACCTTGCATTGGTCAAGGTTCGG...GACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTGGGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp CAGTCCCACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATGCTCTAGTGTCGAGGAACAGCTTTCTTaGCTTCTGAGGATGTTACTT +
Preference number: 2 (lower is better)
Translates to: QSHKLLLSHILPSRCSSVEEQLS*LLRMLL
Trigger: AAGTAACATCCTCAGAAGGCAAGAAAGCTGTTCCTC...GACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTGGGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGCAGCAGAGGGGAGGGTaGCTCAGTCCCAGTCCTCAA +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILQQRGG*LSPSPQ
Trigger: TTGAGGACTGGGACTGAGCCACCCTCCCCTCTGCTG...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp CAGTCCCACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATGCTCTAGTGTCATTAGCAAAGCAGATTaGCAATGGTTGCTGTTAAGT +
Preference number: 2 (lower is better)
Translates to: QSHKLLLSHILPSRCSSVISKAD*QWLLLS
Trigger: ACTTAACAGCAACCATTGCCAATCTGCTTTGCTAAT...GACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTGGGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGGGTCTAAAGCAGAGGTaGGAGGGCAGCAATCAGCAA +
Preference number: 2 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGGLKQR*EGSNQQ
Trigger: TTGCTGATTGCTGCCCTCCCACCTCTGCTTTAGACC...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR TCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGGGTGAGAAGAGACAATaGTGGGAGAATGCTCTCTGG +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILGEKRQ*WENALW
Trigger: CCAGAGAGCATTCTCCCATCATTGTCTCTTCTCACC...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR TCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGGACTATGTTTGGACATaGGGGTCAGATGCTCAGGGT +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILDYVWT*GSDAQG
Trigger: ACCCTGAGCATCTGACCCTCATGTCCAAACATAGTC...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGGACATGAGGGTCAGATaGTCAGGGTCTAAAGCAGAG +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILDMRVR*SGSKAE
Trigger: CTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGGGGGTCCCTGTTCTCTaGACCCGTCTTAATTATCTA +
Preference number: 2 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGGVPVL*TRLNYL
Trigger: TAGATAATTAAGACGGGTGCAGAGAACAGGGACCCC...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
40% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 90 bp AGAGGAAGACGTTTTGCTGATTTCCATCCTTCCCTTTTCCTTATTTaGTGTGAAGGAGAAGATACAATATGGGCATTAAAGTTAGACACC +
Preference number: 2 (lower is better)
Translates to: RGRRFADFHPSLFLI*CEGEDTIWALKLDT
Trigger: GGTGTCTAACTTTAATGCCCATATTGTATCTTCTCCTTCACACAAAATAAGGAAAAGGGAAGGATGGAAATCAGCAAAACGTCTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGGCCTTCTGTTTTCCTTaGAGGCTTTTAAACAGGCCA +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILAFCFP*RLLNRP
Trigger: TGGCCTGTTTAAAAGCCTCCAAGGAAAACAGAAGGC...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR GCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGAGAAGACAGATCAACTaGCTTCTGTTTTCCTTGGAG +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILRRQIN*LLFSLE
Trigger: CTCCAAGGAAAACAGAAGGCAGTTGATCTGTCTTCT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGAAGGGAAAACAGACATaGGATGGGAAAAGTAAGAAC +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILKGKQT*DGKSKN
Trigger: GTTCTTACTTTTCCCATCCCATGTCTGTTTTCCCTT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGAGAAACCATACGTTTTaGGAAAACTCACAAAGAAGA +
Preference number: 2 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGRNHTF*ENSQRR
Trigger: TCTTCTTTGTGAGTTTTCCCAAAACGTATGGTTTCT...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGAAAGCAGATTGGCAATaGTTGCTGTTAAGTAGATAT +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILKADWQ*LLLSRY
Trigger: ATATCTACTTAACAGCAACCATTGCCAATCTGCTTT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGAATGGCGATTTCTTCTaGTTTCATCTATGCATAATC +
Preference number: 2 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILNGDFF*FHLCII
Trigger: GATTATGCATAGATGAAACCAGAAGAAATCGCCATT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CAA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCACCTCTTCCCAGGCCATaGCAGAGGAAGACGTTTTGC +
Preference number: 3 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSPLPRP*QRKTFC
Trigger: GCAAAACGTCTTCCTCTGCAATGGCCTGGGAAGAGG...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR TCA 72 bp TGTCCAGGCATGTCCCAAACATGTGATCCTCCTGTCTaGACCTCTTTACGTGTTGGGGTCCCTGTTCTCTGC +
Preference number: 3 (lower is better)
Translates to: CPGMSQTCDPPV*TSLRVGVPVLC
Trigger: GCAGAGAACAGGGACCCCAACACGTAAAGAGGTTCAGACAGGAGGATCACATGTTTGGGACATGCCTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR TCA 72 bp CACTTGATGCCCAAGTGTCCAGACTATGTTTGGACATaGGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGG +
Preference number: 3 (lower is better)
Translates to: HLMPKCPDYVWT*GSDAQGLKQRW
Trigger: CCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTCCAAACATAGTCTGGACACTTGGGCATCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CAA 90 bp CAGTCCCACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATGCTCTAGTGTCGGAATGATGATGTGTTaGGACCAGCAACCAGCAGAG +
Preference number: 3 (lower is better)
Translates to: QSHKLLLSHILPSRCSSVGMMMC*DQQPAE
Trigger: CTCTGCTGGTTGCTGGTCCAAACACATCATCATTCC...GACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTGGGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR GCA 72 bp CACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATaGTCTAGTGTCCCAATCTGTAGGTTGGGGACCACA +
Preference number: 3 (lower is better)
Translates to: HKLLLSHILPSR*SSVPICRLGTT
Trigger: TGTGGTCCCCAACCTACAGATTGGGACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CAA 90 bp CAGTCCCACAAGCTGCTGTTAAGTCACATACTGCCATCCAGATGCTCTAGTGTCTGCCTTCTGTTTTCCTaGGAGGCTTTTAAACAGGCC +
Preference number: 3 (lower is better)
Translates to: QSHKLLLSHILPSRCSSVCLLFS*EAFKQA
Trigger: GGCCTGTTTAAAAGCCTCCAAGGAAAACAGAAGGCA...GACACTAGAGCATCTGGATGGCAGTATGTGACTTAACAGCAGCTTGTGGGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR TCA 72 bp AGCAATCAGCAAGGCAAGAGCCTGGAAGTCTGGGTTTaGCTTACCGCCATGTTTCAGTTTATCCAGAGCATC +
Preference number: 3 (lower is better)
Translates to: SNQQGKSLEVWV*LTAMFQFIQSI
Trigger: GATGCTCTGGATAAACTGAAACATGGCGGTAAGTCAAACCCAGACTTCCAGGCTCTTGCCTTGCTGATTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR GCA 72 bp ACCAATGGCTTTAGCAGTTCTGAGGAACAGCTTTCTTaGCTTCTGAGGATGTTACTTTCCATGCCCCATGTC +
Preference number: 3 (lower is better)
Translates to: TNGFSSSEEQLS*LLRMLLSMPHV
Trigger: GACATGGGGCATGGAAAGTAACATCCTCAGAAGGCAAGAAAGCTGTTCCTCAGAACTGCTAAAGCCATTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CCA 72 bp CACAAAGAAGACAGATCAACTGCCTTCTGTTTTCCTTaGAGGCTTTTAAACAGGCCAGGAAAGTTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: HKEDRSTAFCFP*RLLNRPGKFAF
Trigger: AAAAGCAAACTTTCCTGGCCTGTTTAAAAGCCTCCAAGGAAAACAGAAGGCAGTTGATCTGTCTTCTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR-3UTR CAA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGGTGTCCAGACTATGTTaGGACATGAGGGTCAGATGC +
Preference number: 3 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGVSRLC*DMRVRC
Trigger: GCATCTGACCCTCATGTCCAAACATAGTCTGGACAC...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR TCA 72 bp TCTTATCAGAGGGTTTGTAATGGTGAGAAGAGACAATaGTGGGAGAATGCTCTCTGGATTAAAGTCACTATA +
Preference number: 3 (lower is better)
Translates to: SYQRVCNGEKRQ*WENALWIKVTI
Trigger: TATAGTGACTTTAATCCAGAGAGCATTCTCCCATCATTGTCTCTTCTCACCATTACAAACCCTCTGATAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCAGACTCTTCTCCTGGATaGACTGGACACCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSDSSPG*TGHLGR
Trigger: CCTTCCAAGGTGTCCAGTTCATCCAGGAGAAGAGTC...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCATTGGCCAAGAGGTGGTaGGAGCTCTTGACTCTTCTC +
Preference number: 4 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSLAKRW*ELLTLL
Trigger: GAGAAGAGTCAAGAGCTCTCACCACCTCTTGGCCAA...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR GCA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCACAACGACTTCCCATATaGTCGATTCCCACACAGATT +
Preference number: 4 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSQRLPI*SIPTQI
Trigger: AATCTGTGTGGGAATCGAGCATATGGGAAGTCGTTG...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 72 bp GACAAAGCACTTGATGCCCAAGTGTCCAGACTATGTTaGGACATGAGGGTCAGATGCTCAGGGTCTAAAGCA +
Preference number: 4 (lower is better)
Translates to: DKALDAQVSRLC*DMRVRCSGSKA
Trigger: TGCTTTAGACCCTGAGCATCTGACCCTCATGTCCAAACATAGTCTGGACACTTGGGCATCAAGTGCTTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGCTGCGCTCACAGCGTTaGGGCAGTAGCTCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGLRSQR*GSSSRG
Trigger: GCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAG...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR GCA 90 bp AATACGACTTTAAGACCAATGGCTTTAGCAGTTCTGAGGAACAGCTTTCTTGCCGGCTGGGTACTCTTCTaGTATCTTCTTGAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: NTTLRPMALAVLRNSFLAGWVLF*YLLEVS
Trigger: AGACACCTCAAGAAGATAGCAGAAGAGTACCCAGCC...GGCAAGAAAGCTGTTCCTCAGAACTGCTAAAGCCATTGGTCTTAAAGTCGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR GCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGCGCCACAGGAAGTACTaGCTGTTAATGGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGRHRKY*LLMAGR
Trigger: CCTCCCTGCCATTAACAGGCAGTACTTCCTGTGGCG...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGGGTGGTGAGAGCTCTTaGCTCTTCTCCTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGGGESS*LFSWMN
Trigger: GTTCATCCAGGAGAAGAGTCAAGAGCTCTCACCACC...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR CCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGAAATCCCCACAGGTCTaGAGGGCGTTTTGGTGGGAT +
Preference number: 4 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILKSPQV*RAFWWD
Trigger: ATCCCACCAAAACGCCCTCCAGACCTGTGGGGATTT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR CCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGTCCCTGGGGAAGGGCTaGGTACTCTTCTGCTATCTT +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGSLGKG*VLFCYL
Trigger: AAGATAGCAGAAGAGTACCCAGCCCTTCCCCAGGGA...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 72 bp TCACAAAGAAGACAGATCAACTGCCTTCTGTTTTCCTaGGAGGCTTTTAAACAGGCCAGGAAAGTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: SQRRQINCLLFS*EAFKQARKVCF
Trigger: AAAGCAAACTTTCCTGGCCTGTTTAAAAGCCTCCAAGGAAAACAGAAGGCAGTTGATCTGTCTTCTTTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp AATACGACTTTAAGACCAATGGCTTTAGCAGTTCTGAGGAACAGCTTTCTTGCCAAGGAATCACCGTGGTaGAAACTTCAATATTCTCAT +
Preference number: 4 (lower is better)
Translates to: NTTLRPMALAVLRNSFLAKESPW*KLQYSH
Trigger: ATGAGAATATTGAAGTTTTCACCACGGTGATTCCTT...GGCAAGAAAGCTGTTCCTCAGAACTGCTAAAGCCATTGGTCTTAAAGTCGTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGCTTCTGCTATCTTCTTaGGGTGTCTGGATCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGLLLSS*GVWILF
Trigger: GAAGAGGATCCAGACACCTCAAGAAGATAGCAGAAG...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR GCA 90 bp CTTTGTTCTGGATTCCAACTTAATATTGTATATGACATTAGATGGTTCACTGGGCAATATTCTCATCACTaGAGCTGTAGATCTGATGCA +
Preference number: 4 (lower is better)
Translates to: LCSGFQLNIVYDIRWFTGQYSHH*SCRSDA
Trigger: TGCATCAGATCTACAGCTGCAGTGATGAGAATATTG...CCCAGTGAACCATCTAATGTCATATACAATATTAAGTTGGAATCCAGAACAAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR TCA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGATTCCCACACAGATTTaGTGTTTTGGGTTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILIPTQI*CFGFRN
Trigger: ATTTCTGAACCCAAAACATCAAATCTGTGTGGGAAT...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
3UTR CAA 72 bp TTAAACAGGCCAGGAAAGTTTGCTTTTGGTATAGCTTaGCCTAAAAGTAGGTATATAACCTTTGTAATTGAC +
Preference number: 4 (lower is better)
Translates to: LNRPGKFAFGIA*PKSRYITFVID
Trigger: GTCAATTACAAAGGTTATATACCTACTTTTAGGCAAAGCTATACCAAAAGCAAACTTTCCTGGCCTGTTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS GCA 90 bp TCTGCAGCCGGCCAGTCTGCAACCATCTGCGGTCACCTGTGTCCCTaGGCTCACAGCGTTGAGGCAGTAGCTCCAGGGGCCTTGGTGGCG +
Preference number: 5 (lower is better)
Translates to: SAAGQSATICGHLCP*AHSVEAVAPGALVA
Trigger: CGCCACCAAGGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAGGGACACAGGTGACCGCAGATGGTTGCAGACTGGCCGGCTGCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 90 bp GTCTGCAACCATCTGCGGTCACCTGTGTCCCTGCGCTCACAGCGTTaGGGCAGTAGCTCCAGGGGCCTTGGTGGCGGGTACAGGTCGGAC +
Preference number: 5 (lower is better)
Translates to: VCNHLRSPVSLRSQR*GSSSRGLGGGYRSD
Trigger: GTCCGACCTGTACCCGCCACCAAGGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAGGGACACAGGTGACCGCAGATGGTTGCAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 90 bp CTTCTGCTCCCTGGGGAAGGGCTGGGTACTCTTCTGCTATCTTCTTaGGGTGTCTGGATCCTCTTCCCAGAACAGCTCCATGTTCTGAGC +
Preference number: 5 (lower is better)
Translates to: LLLPGEGLGTLLLSS*GVWILFPEQLHVLS
Trigger: GCTCAGAACATGGAGCTGTTCTGGGAAGAGGATCCAGACACCTCAAGAAGATAGCAGAAGAGTACCCAGCCCTTCCCCAGGGAGCAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 90 bp GGGTACAGGTCGGACTCGATCACCACATTCTTGGCCAAGAGGTGGTaGGAGCTCTTGACTCTTCTCCTGGATGAACTGGACACCTTGGAA +
Preference number: 5 (lower is better)
Translates to: GYRSDSITTFLAKRW*ELLTLLLDELDTLE
Trigger: TTCCAAGGTGTCCAGTTCATCCAGGAGAAGAGTCAAGAGCTCTCACCACCTCTTGGCCAAGAATGTGGTGATCGAGTCCGACCTGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR CAA 90 bp GACATGAGGGTCAGATGCTCAGGGTCTAAAGCAGAGGTGGGAGGGCAGCAATCAGATTCCCACACAGATTaGATGTTTTGGGTTCAGAAA +
Preference number: 5 (lower is better)
Translates to: DMRVRCSGSKAEVGGQQSDSHTD*MFWVQK
Trigger: TTTCTGAACCCAAAACATCAAATCTGTGTGGGAATC...TGATTGCTGCCCTCCCACCTCTGCTTTAGACCCTGAGCATCTGACCCTCATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 90 bp TGGAGGAATCAACGACTTCCCATATGCTCGATTCCCACACAGATTTaGTGTTTTGGGTTCAGAAATCCCCACAGGTCTGGAGGGCGTTTT +
Preference number: 5 (lower is better)
Translates to: WRNQRLPICSIPTQI*CFGFRNPHRSGGRF
Trigger: AAAACGCCCTCCAGACCTGTGGGGATTTCTGAACCCAAAACATCAAATCTGTGTGGGAATCGAGCATATGGGAAGTCGTTGATTCCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR CAA 90 bp AATACGACTTTAAGACCAATGGCTTTAGCAGTTCTGAGGAACAGCTTTCTTGCCCACAGATTTGATGTTTaGGGTTCAGAAATCCCCACA +
Preference number: 5 (lower is better)
Translates to: NTTLRPMALAVLRNSFLAHRFDV*GSEIPT
Trigger: TGTGGGGATTTCTGAACCCAAAACATCAAATCTGTG...GGCAAGAAAGCTGTTCCTCAGAACTGCTAAAGCCATTGGTCTTAAAGTCGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS-3UTR CAA 90 bp GACTCTGTGACATGTTTTATCCCTAACTTTGTTCTGGATTCCAACTTAATATTGTCTTCTGCTATCTTCTaGAGGTGTCTGGATCCTCTT +
Preference number: 5 (lower is better)
Translates to: DSVTCFIPNFVLDSNLILSSAIF*RCLDPL
Trigger: AAGAGGATCCAGACACCTCAAGAAGATAGCAGAAGA...CAATATTAAGTTGGAATCCAGAACAAAGTTAGGGATAAAACATGTCACAGAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS GCA 72 bp GTTTTGGTGGGATGCGCCCCGGGTGGCCTGGCAGTCTaGAGCCGGCCAGTCTGCAACCATCTGCGGTCACCT +
Preference number: 6 (lower is better)
Translates to: VLVGCAPGGLAV*SRPVCNHLRSP
Trigger: AGGTGACCGCAGATGGTTGCAGACTGGCCGGCTGCAGACTGCCAGGCCACCCGGGGCGCATCCCACCAAAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 72 bp CATCTGCGGTCACCTGTGTCCCTGCGCTCACAGCGTTaGGGCAGTAGCTCCAGGGGCCTTGGTGGCGGGTAC +
Preference number: 6 (lower is better)
Translates to: HLRSPVSLRSQR*GSSSRGLGGGY
Trigger: GTACCCGCCACCAAGGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAGGGACACAGGTGACCGCAGATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS GCA 72 bp GGCCAGTCTGCAACCATCTGCGGTCACCTGTGTCCCTaGGCTCACAGCGTTGAGGCAGTAGCTCCAGGGGCC +
Preference number: 6 (lower is better)
Translates to: GQSATICGHLCP*AHSVEAVAPGA
Trigger: GGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAGGGACACAGGTGACCGCAGATGGTTGCAGACTGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 72 bp TTGGGTTCAGAAATCCCCACAGGTCTGGAGGGCGTTTaGGTGGGATGCGCCCCGGGTGGCCTGGCAGTCTGC +
Preference number: 6 (lower is better)
Translates to: LGSEIPTGLEGV*VGCAPGGLAVC
Trigger: GCAGACTGCCAGGCCACCCGGGGCGCATCCCACCAAAACGCCCTCCAGACCTGTGGGGATTTCTGAACCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 90 bp CTGTGTCCCTGCGCTCACAGCGTTGAGGCAGTAGCTCCAGGGGCCTaGGTGGCGGGTACAGGTCGGACTCGATCACCACATTCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: LCPCAHSVEAVAPGA*VAGTGRTRSPHSWP
Trigger: TGGCCAAGAATGTGGTGATCGAGTCCGACCTGTACCCGCCACCAAGGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCAGGGACACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 72 bp TGCGCTCACAGCGTTGAGGCAGTAGCTCCAGGGGCCTaGGTGGCGGGTACAGGTCGGACTCGATCACCACAT +
Preference number: 6 (lower is better)
Translates to: CAHSVEAVAPGA*VAGTGRTRSPH
Trigger: ATGTGGTGATCGAGTCCGACCTGTACCCGCCACCAAGGCCCCTGGAGCTACTGCCTCAACGCTGTGAGCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CCA 72 bp CGCCCCTGCTGGAGCTTTCACCGAGATCCTAGCCACTaGAGGAATCAACGACTTCCCATATGCTCGATTCCC +
Preference number: 6 (lower is better)
Translates to: RPCWSFHRDPSH*RNQRLPICSIP
Trigger: GGGAATCGAGCATATGGGAAGTCGTTGATTCCTCCAGTGGCTAGGATCTCGGTGAAAGCTCCAGCAGGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 72 bp CCCTGGGGAAGGGCTGGGTACTCTTCTGCTATCTTCTaGAGGTGTCTGGATCCTCTTCCCAGAACAGCTCCA +
Preference number: 6 (lower is better)
Translates to: PWGRAGYSSAIF*RCLDPLPRTAP
Trigger: TGGAGCTGTTCTGGGAAGAGGATCCAGACACCTCAAGAAGATAGCAGAAGAGTACCCAGCCCTTCCCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 72 bp CCTGGGGAAGGGCTGGGTACTCTTCTGCTATCTTCTTaGGGTGTCTGGATCCTCTTCCCAGAACAGCTCCAT +
Preference number: 6 (lower is better)
Translates to: PGEGLGTLLLSS*GVWILFPEQLH
Trigger: ATGGAGCTGTTCTGGGAAGAGGATCCAGACACCTCAAGAAGATAGCAGAAGAGTACCCAGCCCTTCCCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 72 bp TCGGACTCGATCACCACATTCTTGGCCAAGAGGTGGTaGGAGCTCTTGACTCTTCTCCTGGATGAACTGGAC +
Preference number: 6 (lower is better)
Translates to: SDSITTFLAKRW*ELLTLLLDELD
Trigger: GTCCAGTTCATCCAGGAGAAGAGTCAAGAGCTCTCACCACCTCTTGGCCAAGAATGTGGTGATCGAGTCCGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 72 bp CAAGAGGTGGTGAGAGCTCTTGACTCTTCTCCTGGATaGACTGGACACCTTGGAAGGAATCACCGTGGTGAA +
Preference number: 6 (lower is better)
Translates to: QEVVRALDSSPG*TGHLGRNHRGE
Trigger: TTCACCACGGTGATTCCTTCCAAGGTGTCCAGTTCATCCAGGAGAAGAGTCAAGAGCTCTCACCACCTCTTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS TCA 72 bp TCACCACATTCTTGGCCAAGAGGTGGTGAGAGCTCTTaGCTCTTCTCCTGGATGAACTGGACACCTTGGAAG +
Preference number: 6 (lower is better)
Translates to: SPHSWPRGGESS*LFSWMNWTPWK
Trigger: CTTCCAAGGTGTCCAGTTCATCCAGGAGAAGAGTCAAGAGCTCTCACCACCTCTTGGCCAAGAATGTGGTGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 90 bp ATCAACGACTTCCCATATGCTCGATTCCCACACAGATTTGATGTTTaGGGTTCAGAAATCCCCACAGGTCTGGAGGGCGTTTTGGTGGGA +
Preference number: 6 (lower is better)
Translates to: INDFPYARFPHRFDV*GSEIPTGLEGVLVG
Trigger: TCCCACCAAAACGCCCTCCAGACCTGTGGGGATTTCTGAACCCAAAACATCAAATCTGTGTGGGAATCGAGCATATGGGAAGTCGTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CCA 72 bp TCCCATATGCTCGATTCCCACACAGATTTGATGTTTTaGGTTCAGAAATCCCCACAGGTCTGGAGGGCGTTT +
Preference number: 6 (lower is better)
Translates to: SHMLDSHTDLMF*VQKSPQVWRAF
Trigger: AAACGCCCTCCAGACCTGTGGGGATTTCTGAACCCAAAACATCAAATCTGTGTGGGAATCGAGCATATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4
CDS CAA 72 bp TCAACGACTTCCCATATGCTCGATTCCCACACAGATTaGATGTTTTGGGTTCAGAAATCCCCACAGGTCTGG +
Preference number: 6 (lower is better)
Translates to: STTSHMLDSHTD*MFWVQKSPQVW
Trigger: CCAGACCTGTGGGGATTTCTGAACCCAAAACATCAAATCTGTGTGGGAATCGAGCATATGGGAAGTCGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088666.4