RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VWDE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079679

Ensembl transcript IDs: ENSMUST00000054530.7, ENSMUST00000203074.3

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATaGAATCAGCAGGAAAGGATTAACAGCTGCCAGGAAGAGACCATC +
Preference number: 1 (lower is better)
Translates to: LVSGWPGVSYEKQQR*NQQERINSCQEETI
Trigger: GATGGTCTCTTCCTGGCAGCTGTTAATCCTTTCCTGCTGATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR-3UTR GCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTATCAGACAAGCAGTTaGACGGACTATAGCTTTGGC +
Preference number: 2 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAYQTSS*TDYSFG
Trigger: GCCAAAGCTATAGTCCGTGCAACTGCTTGTCTGATA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR-3UTR GCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGAAAGGATTAACAGCTaGCAGGAAGAGACCATCAAG +
Preference number: 2 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAERINS*QEETIK
Trigger: CTTGATGGTCTCTTCCTGGCAGCTGTTAATCCTTTC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGAAGTACCAATTAAGTaGAAAGGTCTTGTGTCTGGG +
Preference number: 2 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEEVPIK*KGLVSG
Trigger: CCCAGACACAAGACCTTTGCACTTAATTGGTACTTC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR TCA 72 bp GGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATaGAATCAGCAGGAAAGGATTAACAGCTGCCAGGAA +
Preference number: 3 (lower is better)
Translates to: GWPGVSYEKQQR*NQQERINSCQE
Trigger: TTCCTGGCAGCTGTTAATCCTTTCCTGCTGATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR GCA 72 bp AAAGGTTATTGTCTGCAGACAGAAGTACCAATTAAGTaGAAAGGTCTTGTGTCTGGGTGGCCTGGCGTTTCC +
Preference number: 3 (lower is better)
Translates to: KGYCLQTEVPIK*KGLVSGWPGVS
Trigger: GGAAACGCCAGGCCACCCAGACACAAGACCTTTGCACTTAATTGGTACTTCTGTCTGCAGACAATAACCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGAAGAGACCATCAAGTaGTATGGTATCAGACAAGCA +
Preference number: 3 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAEETIK*YGIRQA
Trigger: TGCTTGTCTGATACCATACAACTTGATGGTCTCTTC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR TCA 72 bp TTGTCCCACAAGGATAACTGCGAGTATACTAATCACTaGCAGGAAATGTCTCTCTTAGAACTCATAGCTAAG +
Preference number: 3 (lower is better)
Translates to: LSHKDNCEYTNH*QEMSLLELIAK
Trigger: CTTAGCTATGAGTTCTAAGAGAGACATTTCCTGTCAGTGATTAGTATACTCGCAGTTATCCTTGTGGGACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCAGGAGCAGGAGGCTGTaGCATGGAGAGCTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIRSRRL*HGELAN
Trigger: GTTGGCCAGCTCTCCATGGCACAGCCTCCTGCTCCT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGCCCAGGAGCTCCACTaGGATCTTGGGCCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEAQELH*DLGPAW
Trigger: CCAGGCAGGCCCAAGATCTCAGTGGAGCTCCTGGGC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGAGCCAGATGGGGGCCTaGGTCCCGCAGTGGTTCATC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCESQMGA*VPQWFI
Trigger: GATGAACCACTGCGGGACTCAGGCCCCCATCTGGCT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTTCAGTGAGGCCCGATaGTGTGGGCCACGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAFSEAR*CGPRGG
Trigger: GCCCCCTCGTGGCCCACAGCATCGGGCCTCACTGAA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCTGAGATCTTGGGCCTaGCTGGAGGAGCAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCELRSWA*LEEQEE
Trigger: CTCCTCCTGCTCCTCCAGGCAGGCCCAAGATCTCAG...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCCAGGAGAGCACTCCTaGGCTTGCTGGCATTTTCCC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEPGEHS*ACWHFP
Trigger: GGGAAAATGCCAGCAAGCTCAGGAGTGCTCTCCTGG...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCGACAGAGCCTTCCAATaGTGGAGTTGGCTAGAGTCT +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIDRAFQ*WSWLES
Trigger: AGACTCTAGCCAACTCCAGCATTGGAAGGCTCTGTC...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGGCCACTCCTCCCTCTaGCCAGTTCACGTCATCCTT +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEGHSSL*PVHVIL
Trigger: AAGGATGACGTGAACTGGGCAGAGGGAGGAGTGGCC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTCATCTCAACACACTTaGTTGGCATCTCAGCGGGTC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEISSQHT*LASQRV
Trigger: GACCCGCTGAGATGCCAACCAAGTGTGTTGAGATGA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTCAGAGACAGCCAGATaGGGGCCTGAGTCCCGCAGT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITASETAR*GPESRS
Trigger: ACTGCGGGACTCAGGCCCCCATCTGGCTGTCTCTGA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGCTCCACTGAGATCTTaGGCCTGCCTGGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAAPLRS*ACLEEQ
Trigger: CTGCTCCTCCAGGCAGGCCCAAGATCTCAGTGGAGC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCAGAGCCTTCCAATGCTaGAGTTGGCTAGAGTCTGCT +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIRAFQC*SWLESA
Trigger: AGCAGACTCTAGCCAACTCCAGCATTGGAAGGCTCT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR CAA 72 bp GTCTGCAGACAGAAGTACCAATTAAGTGCAAAGGTCTaGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGC +
Preference number: 4 (lower is better)
Translates to: VCRQKYQLSAKV*CLGGLAFPMKS
Trigger: GCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGACCTTTGCACTTAATTGGTACTTCTGTCTGCAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTGCTGGCATTTTCCCTaGACCAGGAGCATCAGCGCA +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCECWHFP*TRSISA
Trigger: TGCGCTGATGCTCCTGGTCCAGGGAAAATGCCAGCA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCCTCTTCCTCATTTCCTaGTCCTGTGTATGCCTCTCA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEILFLIS*SCVCLS
Trigger: TGAGAGGCATACACAGGACCAGGAAATGAGGAAGAG...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTTCCAATGCTGGAGTTaGCTAGAGTCTGCTGACAGA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIFQCWS*LESADR
Trigger: TCTGTCAGCAGACTCTAGCCAACTCCAGCATTGGAA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTCACAGATCAGGTCTTaGACAGCTGAATACTGGAGA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEISQIRS*TAEYWR
Trigger: TCTCCAGTATTCAGCTGTTCAAGACCTGATCTGTGA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCCGTCGTGATCAATTTTaGTCCCGTTCTTGTCATGGA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIRRDQF*SRSCHG
Trigger: TCCATGACAAGAACGGGATCAAAATTGATCACGACG...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCACAATACAGCCTGGCTaGATATTCCATTGGCACAAG +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEITIQPG*IFHWHK
Trigger: CTTGTGCCAATGGAATATGCAGCCAGGCTGTATTGT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCAGTCTGCTGACAGATTaGCAAGACGCTGAATTCAGT +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEISLLTD*QDAEFS
Trigger: ACTGAATTCAGCGTCTTGGCAATCTGTCAGCAGACT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCGGCTGCATATTCCATTaGCACAAGAGTTCTGGTGAA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIGCIFH*HKSSGE
Trigger: TTCACCAGAACTCTTGTGCCAATGGAATATGCAGCC...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCGAGATTTTGCATCCTTaGTCAAGCTCACTAAACTCC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIEILHP*SSSLNS
Trigger: GGAGTTTAGTGAGCTTGATCAAGGATGCAAAATCTC...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCGTGCTAAATAAAAACTaGCAAGTGGCACAAGCTGTC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIVLNKN*QVAQAV
Trigger: GACAGCTTGTGCCACTTGGCAGTTTTTATTTAGCAC...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGAGAACGCCTGAAGAGTaGTCTCCTGTCTCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCERTPEE*SPVSAL
Trigger: AAGAGCTGAGACAGGAGAGCACTCTTCAGGCGTTCT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCCTACTGAGGTGTTTGTaGGGGAAACATCAAAAGTAC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEILLRCL*GKHQKY
Trigger: GTACTTTTGATGTTTCCCCCACAAACACCTCAGTAG...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCGGGGATTCATGTAACTaGCCACTGCACATATCAAAA +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIGDSCN*PLHISK
Trigger: TTTTGATATGTGCAGTGGCCAGTTACATGAATCCCC...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCACATGTCCACAACATaGTTCAGTGTCCTGCCGAGA +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEHMSTT*FSVLPR
Trigger: TCTCGGCAGGACACTGAACCATGTTGTGGACATGTG...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTTAACACTTCCAGAATaGCTTCTACTGTCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEILTLPE*LLLSSC
Trigger: ACAGGAAGACAGTAGAAGGCATTCTGGAAGTGTTAA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATAGGAACTGTAGCCTaGAGAACACACACAGCCCCA +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAIGTVA*RTHTAP
Trigger: TGGGGCTGTGTGTGTTCTCCAGGCTACAGTTCCTAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR CAA 72 bp GAAAGGATTAACAGCTGCCAGGAAGAGACCATCAAGTaGTATGGTATCAGACAAGCAGTTGCACGGACTATA +
Preference number: 4 (lower is better)
Translates to: ERINSCQEETIK*YGIRQAVARTI
Trigger: TATAGTCCGTGCAACTGCTTGTCTGATACCATACAACTTGATGGTCTCTTCCTGGCAGCTGTTAATCCTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGACAGACACAGGGATTTaGAAGAGGCAGCAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCETDTGI*KRQQSF
Trigger: AAAAGACTGCTGCCTCTTTCAAATCCCTGTGTCTGT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTATCAGAAATCCTACTaGGGTGTTTGTGGGGGAAAC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEYQKSY*GVCGGN
Trigger: GTTTCCCCCACAAACACCTCAGTAGGATTTCTGATA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGTGTGGGTCAGTAAATaGATAGCAGTAAGCAGATGG +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEVWVSK*IAVSRW
Trigger: CCATCTGCTTACTGCTATTCATTTACTGACCCACAC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGTCTCAGCTCTTCTTTaGTTTCTTGGGAAGAAAGCC +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAVSALL*FLGKKA
Trigger: GGCTTTCTTCCCAAGAAATCAAAGAAGAGCTGAGAC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATCAAGGAAGAGAACTaGAGGTGCTTGATGCCTTTG +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAIKEEN*RCLMPL
Trigger: CAAAGGCATCAAGCACCTTCAGTTCTCTTCCTTGAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGTCACCTTCTTCTTTTaGAACAAAGCCACAGTTGCA +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEVTFFF*NKATVA
Trigger: TGCAACTGTGGCTTTGTTGCAAAAGAAGAAGGTGAC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTACCATACGAATGACTaGAGTCATAGGAACTGTAGC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEYHTND*SHRNCS
Trigger: GCTACAGTTCCTATGACTGCAGTCATTCGTATGGTA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTATACTTTGCACATCTaGTTTCTCCAAGTAAAAGAC +
Preference number: 4 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIYTLHI*FLQVKD
Trigger: GTCTTTTACTTGGAGAAACCAGATGTGCAAAGTATA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTCGTATCTCCAAGTCTaGGATTTATGCCATCAAGCT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITASYLQV*DLCHQA
Trigger: AGCTTGATGGCATAAATCTCAGACTTGGAGATACGA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTTCCTTTCCATCTTCTaGTATAGTGTCCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAFLSIF*YSVQFR
Trigger: CCTGAACTGGACACTATATCAGAAGATGGAAAGGAA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGCCATACATCCCTGAGTaGGTTGCAGTAAGTAAACAA +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAPYIPE*VAVSKQ
Trigger: TTGTTTACTTACTGCAACCCACTCAGGGATGTATGG...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGAATTTAAGTCCAGTTTaGATAGGTTTGGGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCENLSPV*IGLGGH
Trigger: ATGCCCACCCAAACCTATCCAAACTGGACTTAAATT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR TCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGATTTCAAAATCACGTaGCATGCTCTTATAAAGGAC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEDFKIT*HALIKD
Trigger: GTCCTTTATAAGAGCATGTCACGTGATTTTGAAATC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTTTCTAAGTGAGATCTaGTGTCCAGATGGTGAGAAA +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAFLSEI*CPDGEK
Trigger: TTTCTCACCATCTGGACAGCAGATCTCACTTAGAAA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGACTCTCCATGTCCACTaGATAAATTGGGACATTTTA +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCETLHVH*INWDIL
Trigger: TAAAATGTCCCAATTTATGCAGTGGACATGGAGAGT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATAAAAACTGCCAAGTaGCACAAGCTGTCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAIKTAK*HKLSVS
Trigger: AGAAACTGACAGCTTGTGCCACTTGGCAGTTTTTAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGCTCTCTATCTTCAGCTaGTATTCCTTTCCATCTTCT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITALSIFS*YSFPSS
Trigger: AGAAGATGGAAAGGAATACCAGCTGAAGATAGAGAG...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATAGCAGTAAGCAGATaGCACATCCTTGACTTTGAT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAIAVSR*HILDFD
Trigger: ATCAAAGTCAAGGATGTGCCATCTGCTTACTGCTAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATGGAAATCATTTTCTaGGTTTTCATCGAAGGTGCC +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAMEIIF*VFIEGA
Trigger: GGCACCTTCGATGAAAACCCAGAAAATGATTTCCAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTTGGATAGGTTTGGGTaGGCATTTTTCTGTAGTAAG +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITALDRFG*AFFCSK
Trigger: CTTACTACAGAAAAATGCCCACCCAAACCTATCCAA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGGTTTTAATGAGATTTTaGATCCTTGATCAAGCTCAC +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEVLMRF*ILDQAH
Trigger: GTGAGCTTGATCAAGGATGCAAAATCTCATTAAAAC...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGATCTTATTACCAGGATaGGGTAAATTTAAGTCCAGT +
Preference number: 4 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEILLPG*GKFKSS
Trigger: ACTGGACTTAAATTTACCGCATCCTGGTAATAAGAT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGATCCCGTTCTTGTCATaGAAATCATTTTCTGGGTTT +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAIPFLS*KSFSGF
Trigger: AAACCCAGAAAATGATTTCCATGACAAGAACGGGAT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR GCA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGCAAAATCACGTGACATaGTCTTATAAAGGACAAATG +
Preference number: 4 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAQNHVT*SYKGQM
Trigger: CATTTGTCCTTTATAAGAGCATGTCACGTGATTTTG...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
3UTR CAA 72 bp TTTTATACGCCTATTTCAGTTTTTGCACAATTTCTGTaGTCCCACAAGGATAACTGCGAGTATACTAATCAC +
Preference number: 4 (lower is better)
Translates to: FYTPISVFAQFL*SHKDNCEYTNH
Trigger: GTGATTAGTATACTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTATAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS GCA 90 bp AGTCTGCTGACAGATTGCCAAGACGCTGAATTCAGTGAGGCCCGATaGTGTGGGCCACGAGGGGGCAAACTCCGGCTGGCTGTCCTCAGT +
Preference number: 5 (lower is better)
Translates to: SLLTDCQDAEFSEAR*CGPRGGKLRLAVLS
Trigger: ACTGAGGACAGCCAGCCGGAGTTTGCCCCCTCGTGGCCCACAGCATCGGGCCTCACTGAATTCAGCGTCTTGGCAATCTGTCAGCAGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 90 bp AGAGGCAGAGCTTCTGAATCACTCAGAGACAGCCAGATGGGGGCCTaGGTCCCGCAGTGGTTCATCTCAACACACTTGGTTGGCATCTCA +
Preference number: 5 (lower is better)
Translates to: RGRASESLRDSQMGA*VPQWFISTHLVGIS
Trigger: TGAGATGCCAACCAAGTGTGTTGAGATGAACCACTGCGGGACTCAGGCCCCCATCTGGCTGTCTCTGAGTGATTCAGAAGCTCTGCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 90 bp ACAAGCTGTCAGTTTCTTCATCTCTCCAGGAAGAGGCAGAGCTTCTaGATCACTCAGAGACAGCCAGATGGGGGCCTGAGTCCCGCAGTG +
Preference number: 5 (lower is better)
Translates to: TSCQFLHLSRKRQSF*ITQRQPDGGLSPAV
Trigger: CACTGCGGGACTCAGGCCCCCATCTGGCTGTCTCTGAGTGATTCAGAAGCTCTGCCTCTTCCTGGAGAGATGAAGAAACTGACAGCTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 90 bp AAGGGAAGACAGAGCCTTCCAATGCTGGAGTTGGCTAGAGTCTGCTaGCAGATTGCCAAGACGCTGAATTCAGTGAGGCCCGATGCTGTG +
Preference number: 5 (lower is better)
Translates to: KGRQSLPMLELARVC*QIAKTLNSVRPDAV
Trigger: CACAGCATCGGGCCTCACTGAATTCAGCGTCTTGGCAATCTGTCAGCAGACTCTAGCCAACTCCAGCATTGGAAGGCTCTGTCTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 90 bp GATGGGGGCCTGAGTCCCGCAGTGGTTCATCTCAACACACTTGGTTaGCATCTCAGCGGGTCTGTCAAAGATAAGAAATCGGTACCAACC +
Preference number: 5 (lower is better)
Translates to: DGGLSPAVVHLNTLG*HLSGSVKDKKSVPT
Trigger: GGTTGGTACCGATTTCTTATCTTTGACAGACCCGCTGAGATGCCAACCAAGTGTGTTGAGATGAACCACTGCGGGACTCAGGCCCCCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 90 bp GTTCTTGCCTGTGAGCTCAGGAGGACAGTCACAGGAGTAACTGTGTaGGCCTCTAATACATTTGCCAAGGCCACAAGGGTTGGACTGGCA +
Preference number: 5 (lower is better)
Translates to: VLACELRRTVTGVTV*ASNTFAKATRVGLA
Trigger: TGCCAGTCCAACCCTTGTGGCCTTGGCAAATGTATTAGAGGCTCACACAGTTACTCCTGTGACTGTCCTCCTGAGCTCACAGGCAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 90 bp CTCACAATCGTCCTTCAGGCGGAGAGTGAACGTCTGAGGAGTCTGTaGCTCTGTTTTCCATGTAAGAAGTCCCTCAGAGGAAACAGCTGC +
Preference number: 5 (lower is better)
Translates to: LTIVLQAESERLRSL*LCFPCKKSLRGNSC
Trigger: GCAGCTGTTTCCTCTGAGGGACTTCTTACATGGAAAACAGAGTCACAGACTCCTCAGACGTTCACTCTCCGCCTGAAGGACGATTGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp GCACTCCTTCCCAGGTGGAGGGACAATGACACATGCTGGGAGCTATaGATTCACCCCCATTTTTACATTTCTGAAGGCAGATGGGTGTGT +
Preference number: 5 (lower is better)
Translates to: ALLPRWRDNDTCWEL*IHPHFYISEGRWVC
Trigger: ACACACCCATCTGCCTTCAGAAATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp CCCGGGAAAAGTCTGTCACAGCAGTGTAGTACAATACAGCCTGGCTaGATATTCCATTGGCACAAGAGTTCTGGTGAAGATCCACATGGC +
Preference number: 5 (lower is better)
Translates to: PGKSLSQQCSTIQPG*IFHWHKSSGEDPHG
Trigger: GCCATGTGGATCTTCACCAGAACTCTTGTGCCAATGGAATATGCAGCCAGGCTGTATTGTACTACACTGCTGTGACAGACTTTTCCCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 90 bp ACAGAACATCCTTCACACACATGTCCACAACATGGTTCAGTGTCCTaGCGAGAAAGGGAAGACAGAGCCTTCCAATGCTGGAGTTGGCTA +
Preference number: 5 (lower is better)
Translates to: TEHPSHTCPQHGSVS*REREDRAFQCWSWL
Trigger: TAGCCAACTCCAGCATTGGAAGGCTCTGTCTTCCCTTTCTCGGCAGGACACTGAACCATGTTGTGGACATGTGTGTGAAGGATGTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 90 bp TCGTCAGTAAAGGCTCCATTGATGGTGGTTGAAAGCTCAGGTCATTaGATGTGGTCCCATCACCTTGAAACCCTTCTGGACATGGACCAC +
Preference number: 5 (lower is better)
Translates to: SSVKAPLMVVESSGH*MWSHHLETLLDMDH
Trigger: GTGGTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGACCTGAGCTTTCAACCACCATCAATGGAGCCTTTACTGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp CTACAAAGCCATAAGGACAAGTGCAGAGATTGCCAGACAAGCATGTaGCCCCATGTTCACAAGGAGGGCTACAATGTTCTTCATCGCAGG +
Preference number: 5 (lower is better)
Translates to: LQSHKDKCRDCQTSM*PHVHKEGYNVLHRR
Trigger: CCTGCGATGAAGAACATTGTAGCCCTCCTTGTGAACATGGGGGCACATGCTTGTCTGGCAATCTCTGCACTTGTCCTTATGGCTTTGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp AGACCAGTGTTTCACACCTTGGTCCTACAAAGCCATAAGGACAAGTaGAGAGATTGCCAGACAAGCATGTGCCCCCATGTTCACAAGGAG +
Preference number: 5 (lower is better)
Translates to: RPVFHTLVLQSHKDK*RDCQTSMCPHVHKE
Trigger: CTCCTTGTGAACATGGGGGCACATGCTTGTCTGGCAATCTCTGCACTTGTCCTTATGGCTTTGTAGGACCAAGGTGTGAAACACTGGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp GTTTCTGACACTGCACTCCTTCCCAGGTGGAGGGACAATGACACATaGTGGGAGCTATGCATTCACCCCCATTTTTACATTTCTGAAGGC +
Preference number: 5 (lower is better)
Translates to: VSDTALLPRWRDNDT*WELCIHPHFYISEG
Trigger: GCCTTCAGAAATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGCAGTGTCAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp CATTTGCATACCATACGAATGACTGCAGTCATAGGAACTGTAGCCTaGAGAACACACACAGCCCCAGCCCATACACTCTCCATGTCCACT +
Preference number: 5 (lower is better)
Translates to: HLHTIRMTAVIGTVA*RTHTAPAHTLSMST
Trigger: AGTGGACATGGAGAGTGTATGGGCTGGGGCTGTGTGTGTTCTCCAGGCTACAGTTCCTATGACTGCAGTCATTCGTATGGTATGCAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS CCA 90 bp AGGAGCTATTTCATACGAATGACTGCAGTCATAGGAACTGTAGCCTaGAGAACACACACAGCCCCAGCCCATACACTCTCCATGTCCACT +
Preference number: 5 (lower is better)
Translates to: RSYFIRMTAVIGTVA*RTHTAPAHTLSMST
Trigger: AGTGGACATGGAGAGTGTATGGGCTGGGGCTGTGTGTGTTCTCCAGGCTACAGTTCCTATGACTGCAGTCATTCGTATGAAATAGCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp TCTGACACTGCACTCCTTCCCAGGTGGAGGGACAATGACACATGCTaGGAGCTATGCATTCACCCCCATTTTTACATTTCTGAAGGCAGA +
Preference number: 5 (lower is better)
Translates to: SDTALLPRWRDNDTC*ELCIHPHFYISEGR
Trigger: TCTGCCTTCAGAAATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGCAGTGTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp ACTTTTGAGTACAAATGGGTTTCTGACACTGCACTCCTTCCCAGGTaGAGGGACAATGACACATGCTGGGAGCTATGCATTCACCCCCAT +
Preference number: 5 (lower is better)
Translates to: TFEYKWVSDTALLPR*RDNDTCWELCIHPH
Trigger: ATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGCAGTGTCAGAAACCCATTTGTACTCAAAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCTCTCAACACACTTGGTaGGCATCTCAGCGGGTCTGT +
Preference number: 5 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEISQHTW*ASQRVC
Trigger: ACAGACCCGCTGAGATGCCAACCAAGTGTGTTGAGA...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCAGGTGCTTGATGCCTTaGCAGCCGGAAGCCATTTCT +
Preference number: 5 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIRCLMP*QPEAIS
Trigger: AGAAATGGCTTCCGGCTGCAAAGGCATCAAGCACCT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp GTAGATTTAGCCTCACAATCGTCCTTCAGGCGGAGAGTGAACGTCTaGGGAGTCTGTGACTCTGTTTTCCATGTAAGAAGTCCCTCAGAG +
Preference number: 5 (lower is better)
Translates to: VDLASQSSFRRRVNV*GVCDSVFHVRSPSE
Trigger: CTCTGAGGGACTTCTTACATGGAAAACAGAGTCACAGACTCCTCAGACGTTCACTCTCCGCCTGAAGGACGATTGTGAGGCTAAATCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp CATTCTCAACCTCGGCAATTTCAGGAGCTATTTCATACGAATGACTaGAGTCATAGGAACTGTAGCCTGGAGAACACACACAGCCCCAGC +
Preference number: 5 (lower is better)
Translates to: HSQPRQFQELFHTND*SHRNCSLENTHSPS
Trigger: GCTGGGGCTGTGTGTGTTCTCCAGGCTACAGTTCCTATGACTGCAGTCATTCGTATGAAATAGCTCCTGAAATTGCCGAGGTTGAGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp TCACAAGGAGGGCTACAATGTTCTTCATCGCAGGTTGCTCCACCATaGCCTGGAGGACATGCACAGATGTTAGGCTTAATGCATTTTCCA +
Preference number: 5 (lower is better)
Translates to: SQGGLQCSSSQVAPP*PGGHAQMLGLMHFP
Trigger: TGGAAAATGCATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGTAGCCCTCCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp TTTCACACCTTGGTCCTACAAAGCCATAAGGACAAGTGCAGAGATTaGCAGACAAGCATGTGCCCCCATGTTCACAAGGAGGGCTACAAT +
Preference number: 5 (lower is better)
Translates to: FHTLVLQSHKDKCRD*QTSMCPHVHKEGYN
Trigger: ATTGTAGCCCTCCTTGTGAACATGGGGGCACATGCTTGTCTGGCAATCTCTGCACTTGTCCTTATGGCTTTGTAGGACCAAGGTGTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp ACAGGTGGGTCCATACCAGCCAGACTTGCACTGACAAATATCTGGTaGAACACATTCGCCTCCATTTTCACAATGCCTGTTACAGACCAG +
Preference number: 5 (lower is better)
Translates to: TGGSIPARLALTNIW*NTFASIFTMPVTDQ
Trigger: CTGGTCTGTAACAGGCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp GATCGCATAGAGCTGTACTACAGGTGGGTCCATACCAGCCAGACTTaGACTGACAAATATCTGGTGCAACACATTCGCCTCCATTTTCAC +
Preference number: 5 (lower is better)
Translates to: DRIELYYRWVHTSQT*TDKYLVQHIRLHFH
Trigger: GTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGTAGTACAGCTCTATGCGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp TCTTTCCGGTGTATCCGCCAGGACAACTGCATACGTTATTTCTCATaGACAGGCCACCATTTTTACAGGGAGGGTGACAGACAGCATTCT +
Preference number: 5 (lower is better)
Translates to: SFRCIRQDNCIRYFS*TGHHFYREGDRQHS
Trigger: AGAATGCTGTCTGTCACCCTCCCTGTAAAAATGGTGGCCTGTGCATGAGAAATAACGTATGCAGTTGTCCTGGCGGATACACCGGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp AGATGCTTGTCTGGCATCTCTTTCCGGTGTATCCGCCAGGACAACTaGATACGTTATTTCTCATGCACAGGCCACCATTTTTACAGGGAG +
Preference number: 5 (lower is better)
Translates to: RCLSGISFRCIRQDN*IRYFSCTGHHFYRE
Trigger: CTCCCTGTAAAAATGGTGGCCTGTGCATGAGAAATAACGTATGCAGTTGTCCTGGCGGATACACCGGAAAGAGATGCCAGACAAGCATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp AGGAGGGCTACAATGTTCTTCATCGCAGGTTGCTCCACCATGCCCTaGAGGACATGCACAGATGTTAGGCTTAATGCATTTTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: RRATMFFIAGCSTMP*RTCTDVRLNAFSML
Trigger: AAGCATGGAAAATGCATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGTAGCCCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCTCCACTGAGATCTaGGGCCTGCCTGGAGGAGCA +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITASSTEI*GLPGGA
Trigger: TGCTCCTCCAGGCAGGCCCAAGATCTCAGTGGAGCT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp CATAGAGCTGTACTACAGGTGGGTCCATACCAGCCAGACTTGCACTaGCAAATATCTGGTGCAACACATTCGCCTCCATTTTCACAATGC +
Preference number: 5 (lower is better)
Translates to: HRAVLQVGPYQPDLH*QISGATHSPPFSQC
Trigger: GCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGTAGTACAGCTCTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 90 bp CATACGTTATTTCTCATGCACAGGCCACCATTTTTACAGGGAGGGTaGCAGACAGCATTCTGGCACTGTGTTCCAAAGAATCCACCAGGA +
Preference number: 5 (lower is better)
Translates to: HTLFLMHRPPFLQGG*QTAFWHCVPKNPPG
Trigger: TCCTGGTGGATTCTTTGGAACACAGTGCCAGAATGCTGTCTGTCACCCTCCCTGTAAAAATGGTGGCCTGTGCATGAGAAATAACGTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp CTGTCACAGCAGTGTAGTACAATACAGCCTGGCTGCATATTCCATTaGCACAAGAGTTCTGGTGAAGATCCACATGGCAGGAAGACAATG +
Preference number: 5 (lower is better)
Translates to: LSQQCSTIQPGCIFH*HKSSGEDPHGRKTM
Trigger: CATTGTCTTCCTGCCATGTGGATCTTCACCAGAACTCTTGTGCCAATGGAATATGCAGCCAGGCTGTATTGTACTACACTGCTGTGACAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 90 bp ACGTCATCCTTTAACAGAACATCCTTCACACACATGTCCACAACATaGTTCAGTGTCCTGCCGAGAAAGGGAAGACAGAGCCTTCCAATG +
Preference number: 5 (lower is better)
Translates to: TSSFNRTSFTHMSTT*FSVLPRKGRQSLPM
Trigger: CATTGGAAGGCTCTGTCTTCCCTTTCTCGGCAGGACACTGAACCATGTTGTGGACATGTGTGTGAAGGATGTTCTGTTAAAGGATGACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 90 bp GTAAAGGCTCCATTGATGGTGGTTGAAAGCTCAGGTCATTGCATGTaGTCCCATCACCTTGAAACCCTTCTGGACATGGACCACAATGAT +
Preference number: 5 (lower is better)
Translates to: VKAPLMVVESSGHCM*SHHLETLLDMDHND
Trigger: ATCATTGTGGTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGACCTGAGCTTTCAACCACCATCAATGGAGCCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp ACTACAGGTGGGTCCATACCAGCCAGACTTGCACTGACAAATATCTaGTGCAACACATTCGCCTCCATTTTCACAATGCCTGTTACAGAC +
Preference number: 5 (lower is better)
Translates to: TTGGSIPARLALTNI*CNTFASIFTMPVTD
Trigger: GTCTGTAACAGGCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp ACACATTTTCCACCATTCATGCACATAGGCTCACAGATGCTTGTCTaGCATCTCTTTCCGGTGTATCCGCCAGGACAACTGCATACGTTA +
Preference number: 5 (lower is better)
Translates to: THFPPFMHIGSQMLV*HLFPVYPPGQLHTL
Trigger: TAACGTATGCAGTTGTCCTGGCGGATACACCGGAAAGAGATGCCAGACAAGCATCTGTGAGCCTATGTGCATGAATGGTGGAAAATGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCCTCTTCCAGGTTGCCTaGTCCAAGACTCTGGAAAAT +
Preference number: 5 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEILFQVA*SKTLEN
Trigger: ATTTTCCAGAGTCTTGGACAAGGCAACCTGGAAGAG...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGAGCACTCCTGAGCTaGCTGGCATTTTCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITARALLS*LAFSLD
Trigger: GTCCAGGGAAAATGCCAGCAAGCTCAGGAGTGCTCT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp GTCTTGTGTCTGGGTGGCCTGGCGTTTCCTATGAAAAGCAACAGAGATGAAATCATCCTACTGAGGTGTTaGTGGGGGAAACATCAAAAG +
Preference number: 5 (lower is better)
Translates to: VLCLGGLAFPMKSNRDEIILLRC*WGKHQK
Trigger: CTTTTGATGTTTCCCCCACAAACACCTCAGTAGGAT...GATTTCATCTCTGTTGCTTTTCATAGGAAACGCCAGGCCACCCAGACACAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp AGTAACGATGTCACCTTCTTCTTTTGCAACAAAGCCACAGTTGCATaGCACAGAATAGTGAAGGCTCCCACAGTTCCACTGACGTACATG +
Preference number: 5 (lower is better)
Translates to: SNDVTFFFCNKATVA*HRIVKAPTVPLTYM
Trigger: CATGTACGTCAGTGGAACTGTGGGAGCCTTCACTATTCTGTGTCATGCAACTGTGGCTTTGTTGCAAAAGAAGAAGGTGACATCGTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 90 bp ACAATGTTCTTCATCGCAGGTTGCTCCACCATGCCCTGGAGGACATaGACAGATGTTAGGCTTAATGCATTTTCCATGCTTTTTGCAAAC +
Preference number: 5 (lower is better)
Translates to: TMFFIAGCSTMPWRT*TDVRLNAFSMLFAN
Trigger: GTTTGCAAAAAGCATGGAAAATGCATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTTCATCTCAACACACTaGGTTGGCATCTCAGCGGGT +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEFISTH*VGISAG
Trigger: ACCCGCTGAGATGCCAACCAAGTGTGTTGAGATGAA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp ACTGCCGTTATACTCCAGTTTAGTAACTTCACACGTGATGGACAATaGCTCTTTGAAGCCTTGACCAAAAACCCTCACTGTGGCACAGTT +
Preference number: 5 (lower is better)
Translates to: TAVILQFSNFTRDGQ*LFEALTKNPHCGTV
Trigger: AACTGTGCCACAGTGAGGGTTTTTGGTCAAGGCTTCAAAGAGTCATTGTCCATCACGTGTGAAGTTACTAAACTGGAGTATAACGGCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp AAAGCTCAGGTCATTGCATGTGGTCCCATCACCTTGAAACCCTTCTaGACATGGACCACAATGATAGGAACCAAAAACATTGATGCATTC +
Preference number: 5 (lower is better)
Translates to: KAQVIACGPITLKPF*TWTTMIGTKNIDAF
Trigger: GAATGCATCAATGTTTTTGGTTCCTATCATTGTGGTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGACCTGAGCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGGCACATCCTTGACTTaGATCTGGATGCTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAGTSLT*IWMLSG
Trigger: TCCAGACAGCATCCAGATCAAAGTCAAGGATGTGCC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGAAAACTCTTCCAGGTaGCCTTGTCCAAGACTCTGG +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAENSSR*PCPRLW
Trigger: CCAGAGTCTTGGACAAGGCAACCTGGAAGAGTTTTC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS GCA 90 bp TATCAAAATGTTGGCCATTTGGGAACAGCTGACAGTCAACCACTCTaGTACTTTGAAAGACTGCCTGTGTGTAGACACTTGTTTCAAGCA +
Preference number: 5 (lower is better)
Translates to: YQNVGHLGTADSQPL*YFERLPVCRHLFQA
Trigger: TGCTTGAAACAAGTGTCTACACACAGGCAGTCTTTCAAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAACATTTTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp CTGGACAGGATCTACCTGGTCAAAAGAATTGTTAGGGTTGATGCTTaGAAAACTACCATTGTGTGCTGGAACTTCAAGCTCATCAACAGT +
Preference number: 5 (lower is better)
Translates to: LDRIYLVKRIVRVDA*KTTIVCWNFKLINS
Trigger: ACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGTAGATCCTGTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 90 bp TTTGGCTCCAGAATATCCAGTGCGGCAAGAACATACACCAGGAAATaGACATCTTCCTCCATAAAGGCACTTTTGAGTACAAATGGGTTT +
Preference number: 5 (lower is better)
Translates to: FGSRISSAARTYTRK*TSSSIKALLSTNGF
Trigger: AAACCCATTTGTACTCAAAAGTGCCTTTATGGAGGAAGATGTGCATTTCCTGGTGTATGTTCTTGCCGCACTGGATATTCTGGAGCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTTCCACCGCTATACTTaGCACATCTGGTTTCTCCAA +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEFHRYT*HIWFLQ
Trigger: TTGGAGAAACCAGATGTGCAAAGTATAGCGGTGGAA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCATGCTTCTTCCTGGTaGAAGCCTCCATTCATTGAT +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEHASSW*KPPFID
Trigger: ATCAATGAATGGAGGCTTCAACCAGGAAGAAGCATG...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp AAGGCTCCCACAGTTCCACTGACGTACATGGATTTCAAAATCACGTaGCATGCTCTTATAAAGGACAAATGTTCCAGTCTTGAAGTTGTC +
Preference number: 5 (lower is better)
Translates to: KAPTVPLTYMDFKIT*HALIKDKCSSLEVV
Trigger: GACAACTTCAAGACTGGAACATTTGTCCTTTATAAGAGCATGTCACGTGATTTTGAAATCCATGTACGTCAGTGGAACTGTGGGAGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 90 bp TCCATCAGGACCAGAATCCAATGTAAAACGTATCTCAGAGCCTTCTaGATCCCAGGCCATGAAATGGTATTCAAAGTCTTCACCATAAAA +
Preference number: 5 (lower is better)
Translates to: SIRTRIQCKTYLRAF*IPGHEMVFKVFTIK
Trigger: TTTTATGGTGAAGACTTTGAATACCATTTCATGGCCTGGGATCCAGAAGGCTCTGAGATACGTTTTACATTGGATTCTGGTCCTGATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGCTCTTCTTTGATTTCTaGGGAAGAAAGCCTAGACCA +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCELFFDF*GRKPRP
Trigger: TGGTCTAGGCTTTCTTCCCAAGAAATCAAAGAAGAG...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTGTCACCTTCTTCTTTaGCAACAAAGCCACAGTTGC +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITACHLLL*QQSHSC
Trigger: GCAACTGTGGCTTTGTTGCAAAAGAAGAAGGTGACA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGAAATTTAAGTCCAGTTaGGATAGGTTTGGGTGGGCA +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCEKFKSS*DRFGWA
Trigger: TGCCCACCCAAACCTATCCAAACTGGACTTAAATTT...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS GCA 90 bp GTCAAAAGAATTGTTAGGGTTGATGCTTGCAAAACTACCATTGTGTaGTGGAACTTCAAGCTCATCAACAGTAAGATCTGGACTGAGAAC +
Preference number: 5 (lower is better)
Translates to: VKRIVRVDACKTTIV*WNFKLINSKIWTEN
Trigger: GTTCTCAGTCCAGATCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp TTGGAAAGGTTTGCTAATTTGAGTACTAAGTCCTCCTGTCTCTGTTaGAAATGTGCTCTGGACAGGATCTACCTGGTCAAAAGAATTGTT +
Preference number: 5 (lower is better)
Translates to: LERFANLSTKSSCLC*KCALDRIYLVKRIV
Trigger: AACAATTCTTTTGACCAGGTAGATCCTGTCCAGAGCACATTTCCAACAGAGACAGGAGGACTTAGTACTCAAATTAGCAAACCTTTCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGGTTCCAGTCTTGAAGTaGTCATATACTCTGCCATCA +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITAVPVLK*SYTLPS
Trigger: TGATGGCAGAGTATATGACAACTTCAAGACTGGAAC...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGAGTGTCCACTGCATAAATaGGGACATTTTAACACTTCC +
Preference number: 5 (lower is better)
Translates to: TPISVFAQFLLSHKDNCECPLHK*GHFNTS
Trigger: GGAAGTGTTAAAATGTCCCAATTTATGCAGTGGACA...CTCGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS TCA 90 bp GATATAAACTCTTGCCCAGAGAAATTTTGGAAAGGTTTGCTAATTTaGGTACTAAGTCCTCCTGTCTCTGTTGGAAATGTGCTCTGGACA +
Preference number: 5 (lower is better)
Translates to: DINSCPEKFWKGLLI*VLSPPVSVGNVLWT
Trigger: TGTCCAGAGCACATTTCCAACAGAGACAGGAGGACTTAGTACTCAAATTAGCAAACCTTTCCAAAATTTCTCTGGGCAAGAGTTTATATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp AACAGTAAGATCTGGACTGAGAACATGATCCACATACTCATAAGTTaGTGTCTGATGAGAAACACCTTTCTTCCCATTGTCCATTTGAGT +
Preference number: 5 (lower is better)
Translates to: NSKIWTENMIHILIS*CLMRNTFLPIVHLS
Trigger: ACTCAAATGGACAATGGGAAGAAAGGTGTTTCTCATCAGACACCAACTTATGAGTATGTGGATCATGTTCTCAGTCCAGATCTTACTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp AAAAGAATTGTTAGGGTTGATGCTTGCAAAACTACCATTGTGTGCTaGAACTTCAAGCTCATCAACAGTAAGATCTGGACTGAGAACATG +
Preference number: 5 (lower is better)
Translates to: KRIVRVDACKTTIVC*NFKLINSKIWTENM
Trigger: CATGTTCTCAGTCCAGATCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 90 bp CTAAACTCCGAGCAAACAATAGGAATTGTACTCTCTATCTTCAGCTaGTATTCCTTTCCATCTTCTGATATAGTGTCCAGTTCAGGTTTT +
Preference number: 5 (lower is better)
Translates to: LNSEQTIGIVLSIFS*YSFPSSDIVSSSGF
Trigger: AAAACCTGAACTGGACACTATATCAGAAGATGGAAAGGAATACCAGCTGAAGATAGAGAGTACAATTCCTATTGTTTGCTCGGAGTTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGACAAATGTTCCAGTCTaGAAGTTGTCATATACTCTG +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITATNVPV*KLSYTL
Trigger: CAGAGTATATGACAACTTCAAGACTGGAACATTTGT...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS-3UTR CAA 90 bp ATACGCCTATTTCAGTTTTTGCACAATTTCTGTTGTCCCACAAGGATAACTGCGTCAGTTATTCTGATATaGCTTGATGATGACTCTTGG +
Preference number: 5 (lower is better)
Translates to: IRLFQFLHNFCCPTRITASVILI*LDDDSW
Trigger: CCAAGAGTCATCATCAAGCAATATCAGAATAACTGA...CGCAGTTATCCTTGTGGGACAACAGAAATTGTGCAAAAACTGAAATAGGCGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054530.7
CDS GCA 90 bp TCATCACTTAAATATGCAGGAGGATTTAGTATCTTATTACCAGGATaGGGTAAATTTAAGTCCAGTTTGGATAGGTTTGGGTGGGCATTT +
Preference number: 5 (lower is better)
Translates to: SSLKYAGGFSILLPG*GKFKSSLDRFGWAF
Trigger: AAATGCCCACCCAAACCTATCCAAACTGGACTTAAATTTACCGCATCCTGGTAATAAGATACTAAATCCTCCTGCATATTTAAGTGATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 90 bp TTCCATCTGTTTTGTAGACTCTTCCTCATTTCCTGGTCCTGTGTATaGCTCTCATCACTTAAATATGCAGGAGGATTTAGTATCTTATTA +
Preference number: 5 (lower is better)
Translates to: FHLFCRLFLISWSCV*LSSLKYAGGFSILL
Trigger: TAATAAGATACTAAATCCTCCTGCATATTTAAGTGATGAGAGGCATACACAGGACCAGGAAATGAGGAAGAGTCTACAAAACAGATGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 90 bp GACTCTTGGTTCTTTACAAATAAATATGACGGGGATTCATGTAACTaGCCACTGCACATATCAAAAGTAACGATGTCACCTTCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: DSWFFTNKYDGDSCN*PLHISKVTMSPSSF
Trigger: AAAAGAAGAAGGTGACATCGTTACTTTTGATATGTGCAGTGGCCAGTTACATGAATCCCCGTCATATTTATTTGTAAAGAACCAAGAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 72 bp ACAGATTGCCAAGACGCTGAATTCAGTGAGGCCCGATaGTGTGGGCCACGAGGGGGCAAACTCCGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: TDCQDAEFSEAR*CGPRGGKLRLA
Trigger: AGCCAGCCGGAGTTTGCCCCCTCGTGGCCCACAGCATCGGGCCTCACTGAATTCAGCGTCTTGGCAATCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 72 bp CAGAGCCTTCCAATGCTGGAGTTGGCTAGAGTCTGCTaGCAGATTGCCAAGACGCTGAATTCAGTGAGGCCC +
Preference number: 6 (lower is better)
Translates to: QSLPMLELARVC*QIAKTLNSVRP
Trigger: GGGCCTCACTGAATTCAGCGTCTTGGCAATCTGTCAGCAGACTCTAGCCAACTCCAGCATTGGAAGGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 72 bp GTGTCCTGCCGAGAAAGGGAAGACAGAGCCTTCCAATaGTGGAGTTGGCTAGAGTCTGCTGACAGATTGCCA +
Preference number: 6 (lower is better)
Translates to: VSCREREDRAFQ*WSWLESADRLP
Trigger: TGGCAATCTGTCAGCAGACTCTAGCCAACTCCAGCATTGGAAGGCTCTGTCTTCCCTTTCTCGGCAGGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp CCTCTAATACATTTGCCAAGGCCACAAGGGTTGGACTaGCACTCCCTGGCTTCGGACTCGCAAAGATCACCA +
Preference number: 6 (lower is better)
Translates to: PLIHLPRPQGLD*HSLASDSQRSP
Trigger: TGGTGATCTTTGCGAGTCCGAAGCCAGGGAGTGCCAGTCCAACCCTTGTGGCCTTGGCAAATGTATTAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp TGTGAGCCTCTAATACATTTGCCAAGGCCACAAGGGTaGGACTGGCACTCCCTGGCTTCGGACTCGCAAAGA +
Preference number: 6 (lower is better)
Translates to: CEPLIHLPRPQG*DWHSLASDSQR
Trigger: TCTTTGCGAGTCCGAAGCCAGGGAGTGCCAGTCCAACCCTTGTGGCCTTGGCAAATGTATTAGAGGCTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp TCCTGCCGAGAAAGGGAAGACAGAGCCTTCCAATGCTaGAGTTGGCTAGAGTCTGCTGACAGATTGCCAAGA +
Preference number: 6 (lower is better)
Translates to: SCREREDRAFQC*SWLESADRLPR
Trigger: TCTTGGCAATCTGTCAGCAGACTCTAGCCAACTCCAGCATTGGAAGGCTCTGTCTTCCCTTTCTCGGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp ATTTGCCAAGGCCACAAGGGTTGGACTGGCACTCCCTaGCTTCGGACTCGCAAAGATCACCATAAAAACCAG +
Preference number: 6 (lower is better)
Translates to: ICQGHKGWTGTP*LRTRKDHHKNQ
Trigger: CTGGTTTTTATGGTGATCTTTGCGAGTCCGAAGCCAGGGAGTGCCAGTCCAACCCTTGTGGCCTTGGCAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp CCACCATTCATGCACATAGGCTCACAGATGCTTGTCTaGCATCTCTTTCCGGTGTATCCGCCAGGACAACTG +
Preference number: 6 (lower is better)
Translates to: PPFMHIGSQMLV*HLFPVYPPGQL
Trigger: CAGTTGTCCTGGCGGATACACCGGAAAGAGATGCCAGACAAGCATCTGTGAGCCTATGTGCATGAATGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp GTTCACAAGGAGGGCTACAATGTTCTTCATCGCAGGTaGCTCCACCATGCCCTGGAGGACATGCACAGATGT +
Preference number: 6 (lower is better)
Translates to: VHKEGYNVLHRR*LHHALEDMHRC
Trigger: ACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGTAGCCCTCCTTGTGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp GGGCTACAATGTTCTTCATCGCAGGTTGCTCCACCATaGCCTGGAGGACATGCACAGATGTTAGGCTTAATG +
Preference number: 6 (lower is better)
Translates to: GLQCSSSQVAPP*PGGHAQMLGLM
Trigger: CATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGTAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp GAGCTGTACTACAGGTGGGTCCATACCAGCCAGACTTaGACTGACAAATATCTGGTGCAACACATTCGCCTC +
Preference number: 6 (lower is better)
Translates to: ELYYRWVHTSQT*TDKYLVQHIRL
Trigger: GAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGTAGTACAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp GCCTCACAATCGTCCTTCAGGCGGAGAGTGAACGTCTaGGGAGTCTGTGACTCTGTTTTCCATGTAAGAAGT +
Preference number: 6 (lower is better)
Translates to: ASQSSFRRRVNV*GVCDSVFHVRS
Trigger: ACTTCTTACATGGAAAACAGAGTCACAGACTCCTCAGACGTTCACTCTCCGCCTGAAGGACGATTGTGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp TGTGAGCTCAGGAGGACAGTCACAGGAGTAACTGTGTaGGCCTCTAATACATTTGCCAAGGCCACAAGGGTT +
Preference number: 6 (lower is better)
Translates to: CELRRTVTGVTV*ASNTFAKATRV
Trigger: AACCCTTGTGGCCTTGGCAAATGTATTAGAGGCTCACACAGTTACTCCTGTGACTGTCCTCCTGAGCTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp CACACTCATCTACATCCTTCTCACAGTTCTTGCCTGTaGGCTCAGGAGGACAGTCACAGGAGTAACTGTGTG +
Preference number: 6 (lower is better)
Translates to: HTHLHPSHSSCL*AQEDSHRSNCV
Trigger: CACACAGTTACTCCTGTGACTGTCCTCCTGAGCTCACAGGCAAGAACTGTGAGAAGGATGTAGATGAGTGTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp CCCAGGTGGAGGGACAATGACACATGCTGGGAGCTATaGATTCACCCCCATTTTTACATTTCTGAAGGCAGA +
Preference number: 6 (lower is better)
Translates to: PRWRDNDTCWEL*IHPHFYISEGR
Trigger: TCTGCCTTCAGAAATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp ACTGCACTCCTTCCCAGGTGGAGGGACAATGACACATaGTGGGAGCTATGCATTCACCCCCATTTTTACATT +
Preference number: 6 (lower is better)
Translates to: TALLPRWRDNDT*WELCIHPHFYI
Trigger: AATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp CCATTGATGGTGGTTGAAAGCTCAGGTCATTGCATGTaGTCCCATCACCTTGAAACCCTTCTGGACATGGAC +
Preference number: 6 (lower is better)
Translates to: PLMVVESSGHCM*SHHLETLLDMD
Trigger: GTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGACCTGAGCTTTCAACCACCATCAATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp GCACTCCTTCCCAGGTGGAGGGACAATGACACATGCTaGGAGCTATGCATTCACCCCCATTTTTACATTTCT +
Preference number: 6 (lower is better)
Translates to: ALLPRWRDNDTC*ELCIHPHFYIS
Trigger: AGAAATGTAAAAATGGGGGTGAATGCATAGCTCCCAGCATGTGTCATTGTCCCTCCACCTGGGAAGGAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp GTACTACAGGTGGGTCCATACCAGCCAGACTTGCACTaGCAAATATCTGGTGCAACACATTCGCCTCCATTT +
Preference number: 6 (lower is better)
Translates to: VLQVGPYQPDLH*QISGATHSPPF
Trigger: AAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCCACCTGTAGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp GTTGGCCATTTGGGAACAGCTGACAGTCAACCACTCTaGTACTTTGAAAGACTGCCTGTGTGTAGACACTTG +
Preference number: 6 (lower is better)
Translates to: VGHLGTADSQPL*YFERLPVCRHL
Trigger: CAAGTGTCTACACACAGGCAGTCTTTCAAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TTCATCGCAGGTTGCTCCACCATGCCCTGGAGGACATaGACAGATGTTAGGCTTAATGCATTTTCCATGCTT +
Preference number: 6 (lower is better)
Translates to: FIAGCSTMPWRT*TDVRLNAFSML
Trigger: AAGCATGGAAAATGCATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp CATAAGGACAAGTGCAGAGATTGCCAGACAAGCATGTaGCCCCATGTTCACAAGGAGGGCTACAATGTTCTT +
Preference number: 6 (lower is better)
Translates to: HKDKCRDCQTSM*PHVHKEGYNVL
Trigger: AAGAACATTGTAGCCCTCCTTGTGAACATGGGGGCACATGCTTGTCTGGCAATCTCTGCACTTGTCCTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TTTCACACCTTGGTCCTACAAAGCCATAAGGACAAGTaGAGAGATTGCCAGACAAGCATGTGCCCCCATGTT +
Preference number: 6 (lower is better)
Translates to: FHTLVLQSHKDK*RDCQTSMCPHV
Trigger: AACATGGGGGCACATGCTTGTCTGGCAATCTCTGCACTTGTCCTTATGGCTTTGTAGGACCAAGGTGTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TGTATCCGCCAGGACAACTGCATACGTTATTTCTCATaGACAGGCCACCATTTTTACAGGGAGGGTGACAGA +
Preference number: 6 (lower is better)
Translates to: CIRQDNCIRYFS*TGHHFYREGDR
Trigger: TCTGTCACCCTCCCTGTAAAAATGGTGGCCTGTGCATGAGAAATAACGTATGCAGTTGTCCTGGCGGATACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TCTGGCATCTCTTTCCGGTGTATCCGCCAGGACAACTaGATACGTTATTTCTCATGCACAGGCCACCATTTT +
Preference number: 6 (lower is better)
Translates to: SGISFRCIRQDN*IRYFSCTGHHF
Trigger: AAAATGGTGGCCTGTGCATGAGAAATAACGTATGCAGTTGTCCTGGCGGATACACCGGAAAGAGATGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp CAGTGTAGTACAATACAGCCTGGCTGCATATTCCATTaGCACAAGAGTTCTGGTGAAGATCCACATGGCAGG +
Preference number: 6 (lower is better)
Translates to: QCSTIQPGCIFH*HKSSGEDPHGR
Trigger: CCTGCCATGTGGATCTTCACCAGAACTCTTGTGCCAATGGAATATGCAGCCAGGCTGTATTGTACTACACTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp GGGTCCATACCAGCCAGACTTGCACTGACAAATATCTaGTGCAACACATTCGCCTCCATTTTCACAATGCCT +
Preference number: 6 (lower is better)
Translates to: GSIPARLALTNI*CNTFASIFTMP
Trigger: AGGCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp CACACACAGCCCCAGCCCATACACTCTCCATGTCCACTGCATAAATaGGGACATTTTAACACTTCCAGAATGCCTTCTACTGTCTTCCTG +
Preference number: 6 (lower is better)
Translates to: HTQPQPIHSPCPLHK*GHFNTSRMPSTVFL
Trigger: CAGGAAGACAGTAGAAGGCATTCTGGAAGTGTTAAAATGTCCCAATTTATGCAGTGGACATGGAGAGTGTATGGGCTGGGGCTGTGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 72 bp GCCTGGCTGCATATTCCATTGGCACAAGAGTTCTGGTaGAGATCCACATGGCAGGAAGACAATGCCAAATTT +
Preference number: 6 (lower is better)
Translates to: AWLHIPLAQEFW*RSTWQEDNAKF
Trigger: AAATTTGGCATTGTCTTCCTGCCATGTGGATCTTCACCAGAACTCTTGTGCCAATGGAATATGCAGCCAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 72 bp GTCACCTTCTTCTTTTGCAACAAAGCCACAGTTGCATaGCACAGAATAGTGAAGGCTCCCACAGTTCCACTG +
Preference number: 6 (lower is better)
Translates to: VTFFFCNKATVA*HRIVKAPTVPL
Trigger: CAGTGGAACTGTGGGAGCCTTCACTATTCTGTGTCATGCAACTGTGGCTTTGTTGCAAAAGAAGAAGGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS TCA 72 bp TTCTTCCACAGGAGTGTCTACAAAATGCTCTACAAGTaGTACCATCTCCGTAATACCCAAAGGGGCAGCGTC +
Preference number: 6 (lower is better)
Translates to: FFHRSVYKMLYK*YHLRNTQRGSV
Trigger: GACGCTGCCCCTTTGGGTATTACGGAGATGGTATCACTTGTAGAGCATTTTGTAGACACTCCTGTGGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp CCTCGGCAATTTCAGGAGCTATTTCATACGAATGACTaGAGTCATAGGAACTGTAGCCTGGAGAACACACAC +
Preference number: 6 (lower is better)
Translates to: PRQFQELFHTND*SHRNCSLENTH
Trigger: GTGTGTGTTCTCCAGGCTACAGTTCCTATGACTGCAGTCATTCGTATGAAATAGCTCCTGAAATTGCCGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp ACAATGTTCTTCATCGCAGGTTGCTCCACCATGCCCTaGAGGACATGCACAGATGTTAGGCTTAATGCATTT +
Preference number: 6 (lower is better)
Translates to: TMFFIAGCSTMP*RTCTDVRLNAF
Trigger: AAATGCATTAAGCCTAACATCTGTGCATGTCCTCCAGGGCATGGTGGAGCAACCTGCGATGAAGAACATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp TGTTCCAAAGAATCCACCAGGACAAAGGCACGTGTTTaGCTTATAACAGGAACCACCGTTGAGGCAAATAGG +
Preference number: 6 (lower is better)
Translates to: CSKESTRTKARV*LITGTTVEANR
Trigger: CCTATTTGCCTCAACGGTGGTTCCTGTTATAAGCCAAACACGTGCCTTTGTCCTGGTGGATTCTTTGGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp TTGAAAGCTCAGGTCATTGCATGTGGTCCCATCACCTaGAAACCCTTCTGGACATGGACCACAATGATAGGA +
Preference number: 6 (lower is better)
Translates to: LKAQVIACGPIT*KPFWTWTTMIG
Trigger: TCCTATCATTGTGGTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGACCTGAGCTTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp ATCTGGATGCTGTCTGGAGCGTATCTGTCCCACAGGAAAACATCATaGACTATAGGTTCCACAATGATGTCTGTAACTCTGTCTCCATCC +
Preference number: 6 (lower is better)
Translates to: IWMLSGAYLSHRKTS*TIGSTMMSVTLSPS
Trigger: GGATGGAGACAGAGTTACAGACATCATTGTGGAACCTATAGTCAATGATGTTTTCCTGTGGGACAGATACGCTCCAGACAGCATCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CAA 90 bp CTTTGCCAAGGGTTTCTCTGCTGTCAGATCTATGGTATCAAAATGTaGGCCATTTGGGAACAGCTGACAGTCAACCACTCTGCTACTTTG +
Preference number: 6 (lower is better)
Translates to: LCQGFLCCQIYGIKM*AIWEQLTVNHSATL
Trigger: CAAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAACATTTTGATACCATAGATCTGACAGCAGAGAAACCCTTGGCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp AGAACATACACCAGGAAATGCACATCTTCCTCCATAAAGGCACTTTaGAGTACAAATGGGTTTCTGACACTGCACTCCTTCCCAGGTGGA +
Preference number: 6 (lower is better)
Translates to: RTYTRKCTSSSIKAL*STNGFLTLHSFPGG
Trigger: TCCACCTGGGAAGGAGTGCAGTGTCAGAAACCCATTTGTACTCAAAAGTGCCTTTATGGAGGAAGATGTGCATTTCCTGGTGTATGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp AGACGGCAGCACTGCAGAATATCGTATCTCCAAGTCTaGGATTTATGCCATCAAGCTCTAAAAGCGAGAACG +
Preference number: 6 (lower is better)
Translates to: RRQHCRISYLQV*DLCHQALKART
Trigger: CGTTCTCGCTTTTAGAGCTTGATGGCATAAATCTCAGACTTGGAGATACGATATTCTGCAGTGCTGCCGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 72 bp ATATCTGGTGCAACACATTCGCCTCCATTTTCACAATaGCTGTTACAGACCAGTGTTTCACACCTTGGTCCT +
Preference number: 6 (lower is better)
Translates to: ISGATHSPPFSQ*LLQTSVSHLGP
Trigger: AGGACCAAGGTGTGAAACACTGGTCTGTAACAGGCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TCCATACCAGCCAGACTTGCACTGACAAATATCTGGTaGAACACATTCGCCTCCATTTTCACAATGCCTGTT +
Preference number: 6 (lower is better)
Translates to: SIPARLALTNIW*NTFASIFTMPV
Trigger: AACAGGCATTGTGAAAATGGAGGCGAATGTGTTGCACCAGATATTTGTCAGTGCAAGTCTGGCTGGTATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp AAATTCCTGGCTTTCCACCGCTATACTTTGCACATCTaGTTTCTCCAAGTAAAAGACGGCAGCACTGCAGAA +
Preference number: 6 (lower is better)
Translates to: KFLAFHRYTLHI*FLQVKDGSTAE
Trigger: TTCTGCAGTGCTGCCGTCTTTTACTTGGAGAAACCAGATGTGCAAAGTATAGCGGTGGAAAGCCAGGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp GCAACTTTGCCAAGGGTTTCTCTGCTGTCAGATCTATaGTATCAAAATGTTGGCCATTTGGGAACAGCTGAC +
Preference number: 6 (lower is better)
Translates to: ATLPRVSLLSDL*YQNVGHLGTAD
Trigger: GTCAGCTGTTCCCAAATGGCCAACATTTTGATACCATAGATCTGACAGCAGAGAAACCCTTGGCAAAGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp CCCCAGCCCATACACTCTCCATGTCCACTGCATAAATaGGGACATTTTAACACTTCCAGAATGCCTTCTACT +
Preference number: 6 (lower is better)
Translates to: PQPIHSPCPLHK*GHFNTSRMPST
Trigger: AGTAGAAGGCATTCTGGAAGTGTTAAAATGTCCCAATTTATGCAGTGGACATGGAGAGTGTATGGGCTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CAA 72 bp GGGTTTCTCTGCTGTCAGATCTATGGTATCAAAATGTaGGCCATTTGGGAACAGCTGACAGTCAACCACTCT +
Preference number: 6 (lower is better)
Translates to: GFLCCQIYGIKM*AIWEQLTVNHS
Trigger: AGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAACATTTTGATACCATAGATCTGACAGCAGAGAAACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp AGGGTTTCTCTGCTGTCAGATCTATGGTATCAAAATGTTGGCCATTaGGGAACAGCTGACAGTCAACCACTCTGCTACTTTGAAAGACTG +
Preference number: 6 (lower is better)
Translates to: RVSLLSDLWYQNVGH*GTADSQPLCYFERL
Trigger: CAGTCTTTCAAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAACATTTTGATACCATAGATCTGACAGCAGAGAAACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp AGATTTATGCCATCAAGCTCTAAAAGCGAGAACGCCTaGAGAGTGCTCTCCTGTCTCAGCTCTTCTTTGATT +
Preference number: 6 (lower is better)
Translates to: RFMPSSSKSENA*RVLSCLSSSLI
Trigger: AATCAAAGAAGAGCTGAGACAGGAGAGCACTCTTCAGGCGTTCTCGCTTTTAGAGCTTGATGGCATAAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp GTCATTGCATGTGGTCCCATCACCTTGAAACCCTTCTaGACATGGACCACAATGATAGGAACCAAAAACATT +
Preference number: 6 (lower is better)
Translates to: VIACGPITLKPF*TWTTMIGTKNI
Trigger: AATGTTTTTGGTTCCTATCATTGTGGTCCATGTCCAGAAGGGTTTCAAGGTGATGGGACCACATGCAATGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp TTCACAATGCCTGTTACAGACCAGTGTTTCACACCTTaGTCCTACAAAGCCATAAGGACAAGTGCAGAGATT +
Preference number: 6 (lower is better)
Translates to: FTMPVTDQCFTP*SYKAIRTSAEI
Trigger: AATCTCTGCACTTGTCCTTATGGCTTTGTAGGACCAAGGTGTGAAACACTGGTCTGTAACAGGCATTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp CTGTCTGGAGCGTATCTGTCCCACAGGAAAACATCATaGACTATAGGTTCCACAATGATGTCTGTAACTCTG +
Preference number: 6 (lower is better)
Translates to: LSGAYLSHRKTS*TIGSTMMSVTL
Trigger: CAGAGTTACAGACATCATTGTGGAACCTATAGTCAATGATGTTTTCCTGTGGGACAGATACGCTCCAGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CAA 72 bp ATTTGGGAACAGCTGACAGTCAACCACTCTGCTACTTaGAAAGACTGCCTGTGTGTAGACACTTGTTTCAAG +
Preference number: 6 (lower is better)
Translates to: IWEQLTVNHSAT*KDCLCVDTCFK
Trigger: CTTGAAACAAGTGTCTACACACAGGCAGTCTTTCAAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp CTGCTGTCAGATCTATGGTATCAAAATGTTGGCCATTaGGGAACAGCTGACAGTCAACCACTCTGCTACTTT +
Preference number: 6 (lower is better)
Translates to: LLSDLWYQNVGH*GTADSQPLCYF
Trigger: AAAGTAGCAGAGTGGTTGACTGTCAGCTGTTCCCAAATGGCCAACATTTTGATACCATAGATCTGACAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp ACCAGGAAATGCACATCTTCCTCCATAAAGGCACTTTaGAGTACAAATGGGTTTCTGACACTGCACTCCTTC +
Preference number: 6 (lower is better)
Translates to: TRKCTSSSIKAL*STNGFLTLHSF
Trigger: GAAGGAGTGCAGTGTCAGAAACCCATTTGTACTCAAAAGTGCCTTTATGGAGGAAGATGTGCATTTCCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp AATGTGCTCTGGACAGGATCTACCTGGTCAAAAGAATTGTTAGGGTaGATGCTTGCAAAACTACCATTGTGTGCTGGAACTTCAAGCTCA +
Preference number: 6 (lower is better)
Translates to: NVLWTGSTWSKELLG*MLAKLPLCAGTSSS
Trigger: TGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGTAGATCCTGTCCAGAGCACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TGTTTTCCATGTAAGAAGTCCCTCAGAGGAAACAGCTaGTCCATCAGGACCAGAATCCAATGTAAAACGTAT +
Preference number: 6 (lower is better)
Translates to: CFPCKKSLRGNS*SIRTRIQCKTY
Trigger: ATACGTTTTACATTGGATTCTGGTCCTGATGGAGCAGCTGTTTCCTCTGAGGGACTTCTTACATGGAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp ACCAGAATCCAATGTAAAACGTATCTCAGAGCCTTCTaGATCCCAGGCCATGAAATGGTATTCAAAGTCTTC +
Preference number: 6 (lower is better)
Translates to: TRIQCKTYLRAF*IPGHEMVFKVF
Trigger: GAAGACTTTGAATACCATTTCATGGCCTGGGATCCAGAAGGCTCTGAGATACGTTTTACATTGGATTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp GTTAGGGTTGATGCTTGCAAAACTACCATTGTGTGCTaGAACTTCAAGCTCATCAACAGTAAGATCTGGACT +
Preference number: 6 (lower is better)
Translates to: VRVDACKTTIVC*NFKLINSKIWT
Trigger: AGTCCAGATCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp TGGACAGGATCTACCTGGTCAAAAGAATTGTTAGGGTaGATGCTTGCAAAACTACCATTGTGTGCTGGAACT +
Preference number: 6 (lower is better)
Translates to: WTGSTWSKELLG*MLAKLPLCAGT
Trigger: AGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGTAGATCCTGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 90 bp ACCTGGTCAAAAGAATTGTTAGGGTTGATGCTTGCAAAACTACCATaGTGTGCTGGAACTTCAAGCTCATCAACAGTAAGATCTGGACTG +
Preference number: 6 (lower is better)
Translates to: TWSKELLGLMLAKLP*CAGTSSSSTVRSGL
Trigger: CAGTCCAGATCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp ATACTCCAGTTTAGTAACTTCACACGTGATGGACAATaGCTCTTTGAAGCCTTGACCAAAAACCCTCACTGT +
Preference number: 6 (lower is better)
Translates to: ILQFSNFTRDGQ*LFEALTKNPHC
Trigger: ACAGTGAGGGTTTTTGGTCAAGGCTTCAAAGAGTCATTGTCCATCACGTGTGAAGTTACTAAACTGGAGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp ATTGTTAGGGTTGATGCTTGCAAAACTACCATTGTGTaGTGGAACTTCAAGCTCATCAACAGTAAGATCTGG +
Preference number: 6 (lower is better)
Translates to: IVRVDACKTTIV*WNFKLINSKIW
Trigger: CCAGATCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp ATCTACCTGGTCAAAAGAATTGTTAGGGTTGATGCTTaGAAAACTACCATTGTGTGCTGGAACTTCAAGCTC +
Preference number: 6 (lower is better)
Translates to: IYLVKRIVRVDA*KTTIVCWNFKL
Trigger: GAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGTAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp ATATCTTCTTTTCACATTTGGCTCCAGAATATCCAGTaGGGCAAGAACATACACCAGGAAATGCACATCTTC +
Preference number: 6 (lower is better)
Translates to: ISSFHIWLQNIQ*GKNIHQEMHIF
Trigger: GAAGATGTGCATTTCCTGGTGTATGTTCTTGCCGCACTGGATATTCTGGAGCCAAATGTGAAAAGAAGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CCA 72 bp ATCTGGACTGAGAACATGATCCACATACTCATAAGTTaGTGTCTGATGAGAAACACCTTTCTTCCCATTGTC +
Preference number: 6 (lower is better)
Translates to: IWTENMIHILIS*CLMRNTFLPIV
Trigger: GACAATGGGAAGAAAGGTGTTTCTCATCAGACACCAACTTATGAGTATGTGGATCATGTTCTCAGTCCAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp AATGTGCTCTGGACAGGATCTACCTGGTCAAAAGAATaGTTAGGGTTGATGCTTGCAAAACTACCATTGTGT +
Preference number: 6 (lower is better)
Translates to: NVLWTGSTWSKE*LGLMLAKLPLC
Trigger: ACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTTTGACCAGGTAGATCCTGTCCAGAGCACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp TTTTGTAGACTCTTCCTCATTTCCTGGTCCTGTGTATaGCTCTCATCACTTAAATATGCAGGAGGATTTAGT +
Preference number: 6 (lower is better)
Translates to: FCRLFLISWSCV*LSSLKYAGGFS
Trigger: ACTAAATCCTCCTGCATATTTAAGTGATGAGAGGCATACACAGGACCAGGAAATGAGGAAGAGTCTACAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 72 bp ACATTCTCTGTTTCTTCCACAGGAGTGTCTACAAAATaGTCTACAAGTGATACCATCTCCGTAATACCCAAA +
Preference number: 6 (lower is better)
Translates to: TFSVSSTGVSTK*STSDTISVIPK
Trigger: TTTGGGTATTACGGAGATGGTATCACTTGTAGAGCATTTTGTAGACACTCCTGTGGAAGAAACAGAGAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS CAA 72 bp CTCTTGCCCAGAGAAATTTTGGAAAGGTTTGCTAATTaGAGTACTAAGTCCTCCTGTCTCTGTTGGAAATGT +
Preference number: 6 (lower is better)
Translates to: LLPREILERFAN*STKSSCLCWKC
Trigger: ACATTTCCAACAGAGACAGGAGGACTTAGTACTCAAATTAGCAAACCTTTCCAAAATTTCTCTGGGCAAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS TCA 72 bp ACAGTTCCACTGACGTACATGGATTTCAAAATCACGTaGCATGCTCTTATAAAGGACAAATGTTCCAGTCTT +
Preference number: 6 (lower is better)
Translates to: TVPLTYMDFKIT*HALIKDKCSSL
Trigger: AAGACTGGAACATTTGTCCTTTATAAGAGCATGTCACGTGATTTTGAAATCCATGTACGTCAGTGGAACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS GCA 72 bp TGTCATGGAAATCATTTTCTGGGTTTTCATCGAAGGTaGCACAAAGTCCTAATGTGCTTCTGTAATCTAAAC +
Preference number: 6 (lower is better)
Translates to: CHGNHFLGFHRR*HKVLMCFCNLN
Trigger: GTTTAGATTACAGAAGCACATTAGGACTTTGTGGCACCTTCGATGAAAACCCAGAAAATGATTTCCATGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp GAGCAAACAATAGGAATTGTACTCTCTATCTTCAGCTaGTATTCCTTTCCATCTTCTGATATAGTGTCCAGT +
Preference number: 6 (lower is better)
Translates to: EQTIGIVLSIFS*YSFPSSDIVSS
Trigger: ACTGGACACTATATCAGAAGATGGAAAGGAATACCAGCTGAAGATAGAGAGTACAATTCCTATTGTTTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CAA 72 bp ATCTTATTACCAGGATGCGGTAAATTTAAGTCCAGTTaGGATAGGTTTGGGTGGGCATTTTTCTGTAGTAAG +
Preference number: 6 (lower is better)
Translates to: ILLPGCGKFKSS*DRFGWAFFCSK
Trigger: CTTACTACAGAAAAATGCCCACCCAAACCTATCCAAACTGGACTTAAATTTACCGCATCCTGGTAATAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CAA 72 bp AAAGAATTGTTAGGGTTGATGCTTGCAAAACTACCATaGTGTGCTGGAACTTCAAGCTCATCAACAGTAAGA +
Preference number: 6 (lower is better)
Translates to: KELLGLMLAKLP*CAGTSSSSTVR
Trigger: TCTTACTGTTGATGAGCTTGAAGTTCCAGCACACAATGGTAGTTTTGCAAGCATCAACCCTAACAATTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203074.3
CDS GCA 72 bp AAATATGCAGGAGGATTTAGTATCTTATTACCAGGATaGGGTAAATTTAAGTCCAGTTTGGATAGGTTTGGG +
Preference number: 6 (lower is better)
Translates to: KYAGGFSILLPG*GKFKSSLDRFG
Trigger: CCCAAACCTATCCAAACTGGACTTAAATTTACCGCATCCTGGTAATAAGATACTAAATCCTCCTGCATATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3
CDS CCA 72 bp TTCTTTACAAATAAATATGACGGGGATTCATGTAACTaGCCACTGCACATATCAAAAGTAACGATGTCACCT +
Preference number: 6 (lower is better)
Translates to: FFTNKYDGDSCN*PLHISKVTMSP
Trigger: AGGTGACATCGTTACTTTTGATATGTGCAGTGGCCAGTTACATGAATCCCCGTCATATTTATTTGTAAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054530.7
ENSMUST00000203074.3