Pregenerated sensors for VTN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017344Ensembl transcript IDs: ENSMUST00000017488.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCCGGGAGTTCGAGCTCTaGCTGCGTCTGTGGCCACGC | + |
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Preference number: 4 (lower is better) Translates to: FLLGWEKEMRLLKLSRVGREFEL*LRLWPR Trigger: GCGTGGCCACAGACGCAGCCAGAGCTCGAACTCCCG...GCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | TTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCTCTGGCCATGAAACCCTaGGTGCAGCGGCCCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: LLGWEKEMRLLKLSRVGSLAMKP*VQRPLH Trigger: ATGCAAGGGCCGCTGCACTCAGGGTTTCATGGCCAG...AGAGCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | GACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGCAGCGGCCCTTGCATaGCTCTTGGTCAGCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: DFLLGWEKEMRLLKLSRVAAALA*LLVSQR Trigger: TCTCTGGCTGACCAAGAGTCATGCAAGGGCCGCTGC...CACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | CTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCCACTTTAGGCGCTaGGGTGCTTGGCTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LFIGLGERDEAPEAQPSGLHFRR*GAWLFL Trigger: GAGGAACAGCCAAGCACCCCAGCGCCTAAAGTGGAG...CCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | TTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCTTTGGCTTGGGCAGAGTaGGATAAGGAGCCAGTGACG | + |
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Preference number: 4 (lower is better) Translates to: LLGWEKEMRLLKLSRVGSLAWAE*DKEPVT Trigger: CGTCACTGGCTCCTTATCCCACTCTGCCCAAGCCAA...AGAGCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | TTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCTCAAAGCTCGTCACACTaGCACTTCTTGCTGGCCATG | + |
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Preference number: 4 (lower is better) Translates to: LLGWEKEMRLLKLSRVGSQSSSH*HFLLAM Trigger: CATGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTG...AGAGCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR GCA 90 bp | TTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCCTCCATCAGAGGATCTaGCCCAGAAGAGGAGTTCGA | + |
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Preference number: 4 (lower is better) Translates to: FIGLGERDEAPEAQPSGLLHQRI*PRRGVR Trigger: TCGAACTCCTCTTCTGGGGCAGATCCTCTGATGGAG...GAGCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | GCCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCACCAGGGCTAGTATaGAAAAGGGCCTCAGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: ANRLFIGLGERDEAPEAQPPGLV*KRASGV Trigger: CACCCCTGAGGCCCTTTTTCATACTAGCCCTGGTGG...CTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGACTTCTTGCTGGCCATaGAACCCTGAGTGCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NRLFIGLGERDEAPEAQPTSCWP*NPECSG Trigger: GCCGCTGCACTCAGGGTTTCATGGCCAGCAAGAAGT...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR GCA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGGAGTGCAGCGGCCCTTaGATGACTCTTGGTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: NRLFIGLGERDEAPEAQPECSGP*MTLGQP Trigger: TGGCTGACCAAGAGTCATGCAAGGGCCGCTGCACTC...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | CTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGGCACAGTTCTTCCTCTaGAAACTCAGGGGTCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LFIGLGERDEAPEAQPSGAQFFL*KLRGPL Trigger: CAAGGGACCCCTGAGTTTCCAGAGGAAGAACTGTGC...CCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | TTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCTCTTCCGGCTGATGAATTaGGGTTCTCTGGCTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: FIGLGERDEAPEAQPSGLFRLMN*GSLAPS Trigger: TGATGGAGCCAGAGAACCCCAATTCATCAGCCGGAA...GAGCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGGAATGGGCTCGCAGGTaGCAGGTACAAGCCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: NRLFIGLGERDEAPEAQPEWARR*QVQASP Trigger: TGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTC...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | TTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCAATAGACGCTCTGAATaGGCTCGCAGGTGGCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: FLLGWEKEMRLLKLSRVGNRRSE*ARRWQV Trigger: TACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATT...GCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | TTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGCAGTACTGACTACCCTTaGACAAGTAGGTCTTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: FLLGWEKEMRLLKLSRVGSTDYP*TSRSSP Trigger: AGGGGAAGACCTACTTGTTCAAGGGTAGTCAGTACT...GCCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR GCA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGTTCCCTGGCACACCATaGCAGTTCCGGCTGATGAAT | + |
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Preference number: 4 (lower is better) Translates to: NRLFIGLGERDEAPEAQPFPGTP*QFRLMN Trigger: ATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAA...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | CCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCGCCAATACTGAGCAATaGAGCGTGGGTAGGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: PTDFLLGWEKEMRLLKLSANTEQ*SVGRED Trigger: ATCCTCCCTACCCACGCTCCATTGCTCAGTATTGGC...GCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTACTGCTTCCCCTTaGAGAAGTAGACCCTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: NRLFIGLGERDEAPEAQPSTASP*RSRPFP Trigger: GGGAAAGGGTCTACTTCTTCAAGGGGAAGCAGTACT...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR TCA 90 bp | GTAGCCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTTGGCTGGGTTGCTGCTaGAATTCGTACTCCCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: VANRLFIGLGERDEAPEAWLGCC*NSYSQY Trigger: GTACTGGGAGTACGAATTTCAGCAGCAACCCAGCCA...AGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGGCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR GCA 90 bp | CTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGGGAGCTCTGATAGTAAGTaGAAAGCTCGTCACACTGAC | + |
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Preference number: 4 (lower is better) Translates to: LFIGLGERDEAPEAQPSGSSDSK*KARHTD Trigger: GTCAGTGTGACGAGCTTTGCACTTACTATCAGAGCT...CCCACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | CCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCCCTTGCATGACTCTTaGTCAGCCAGAGAAACCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PTDFLLGWEKEMRLLKLSPLHDS*SARETH Trigger: ATGGGTTTCTCTGGCTGACCAAGAGTCATGCAAGGG...GCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | ACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGACCAATAATCATCCTCTaGCATAGTGAACACGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: TDFLLGWEKEMRLLKLSRPIIIL*HSEHVP Trigger: GGGGACGTGTTCACTATGCCAGAGGATGATTATTGG...TCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | CCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCATGCCCCAGACATCTTaGATAAGTTTGGGGTACCCA | + |
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Preference number: 4 (lower is better) Translates to: PTDFLLGWEKEMRLLKLSMPQTS*ISLGYP Trigger: TGGGTACCCCAAACTTATCCAAGATGTCTGGGGCAT...GCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CCA 90 bp | ACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGATGTTGGTATTGTTCTTaGGCTCCTCCACGTAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: TDFLLGWEKEMRLLKLSRCWYCS*APPRSH Trigger: ATGACTACGTGGAGGAGCCCAAGAACAATACCAACA...TCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 90 bp | CTCCCAGCTGTCCCGCTGAAGCAAGGCAAAGTGCTCAAACACGGCTaGCAGAGAGCTGCCTTCGCACTCCTCCTGGCTGGGTTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LPAVPLKQGKVLKHG*QRAAFALLLAGLLL Trigger: CAGCAGCAACCCAGCCAGGAGGAGTGCGAAGGCAGCTCTCTGTCAGCCGTGTTTGAGCACTTTGCCTTGCTTCAGCGGGACAGCTGGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 90 bp | GCCAGTGACGTAGATGCGGCCGGCCATAGCAGCGTCCACTTTCCCTaGCACACCATGCCAGTTCCGGCTGATGAATTGGGGTTCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: ASDVDAAGHSSVHFP*HTMPVPADELGFSG Trigger: GCCAGAGAACCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAAAGTGGACGCTGCTATGGCCGGCCGCATCTACGTCACTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 90 bp | GGGCAGGAAGGGCGAACGCTGCATCAACATTGTCTGGTATGCCACTaGAGCCTTCGGAGATGTTTCGGGGATAACCAGGGTCCAGGACCC | + |
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Preference number: 5 (lower is better) Translates to: GQEGRTLHQHCLVCH*SLRRCFGDNQGPGP Trigger: GGGTCCTGGACCCTGGTTATCCCCGAAACATCTCCGAAGGCTTCAGTGGCATACCAGACAATGTTGATGCAGCGTTCGCCCTTCCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 90 bp | CTTCTCAGAGGTCGGGCAGCCCAGCCAATACTGAGCAATGGAGCGTaGGTAGGGAGGATTCACAGAGTCCACTCGCCGGGTTCTAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: LLRGRAAQPILSNGA*VGRIHRVHSPGSKV Trigger: AACCTTAGAACCCGGCGAGTGGACTCTGTGAATCCTCCCTACCCACGCTCCATTGCTCAGTATTGGCTGGGCTGCCCGACCTCTGAGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 90 bp | TGCTTGGCTGTTCCTCAGGATCTAGGAAGGCTGTCGGCTTTAGAGTaGCGTCCGTCCGAGGATTTAGGTCACCGGGTGGAGAGGTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: CLAVPQDLGRLSALE*RPSEDLGHRVERCS Trigger: AGAACACCTCTCCACCCGGTGACCTAAATCCTCGGACGGACGGCACTCTAAAGCCGACAGCCTTCCTAGATCCTGAGGAACAGCCAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 90 bp | GACCCTTTCCCGGCCACTGTAACGGTGGGCAGGAAGGGCGAACGCTaGATCAACATTGTCTGGTATGCCACTGAAGCCTTCGGAGATGTT | + |
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Preference number: 5 (lower is better) Translates to: DPFPATVTVGRKGER*INIVWYATEAFGDV Trigger: AACATCTCCGAAGGCTTCAGTGGCATACCAGACAATGTTGATGCAGCGTTCGCCCTTCCTGCCCACCGTTACAGTGGCCGGGAAAGGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 90 bp | CCCGCTGAAGCAAGGCAAAGTGCTCAAACACGGCTGACAGAGAGCTaGCTTCGCACTCCTCCTGGCTGGGTTGCTGCTGAAATTCGTACT | + |
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Preference number: 5 (lower is better) Translates to: PAEARQSAQTRLTES*LRTPPGWVAAEIRT Trigger: AGTACGAATTTCAGCAGCAACCCAGCCAGGAGGAGTGCGAAGGCAGCTCTCTGTCAGCCGTGTTTGAGCACTTTGCCTTGCTTCAGCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 90 bp | CTGCCCCAGAAGAGGAGTTCGAAAATGTTCTCCCAGCTGTCCCGCTaGAGCAAGGCAAAGTGCTCAAACACGGCTGACAGAGAGCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: LPQKRSSKMFSQLSR*SKAKCSNTADRELP Trigger: AGGCAGCTCTCTGTCAGCCGTGTTTGAGCACTTTGCCTTGCTTCAGCGGGACAGCTGGGAGAACATTTTCGAACTCCTCTTCTGGGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 90 bp | GATAGTAAGTGCAAAGCTCGTCACACTGACACTTCTTGCTGGCCATaGAACCCTGAGTGCAGCGGCCCTTGCATGACTCTTGGTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: DSKCKARHTDTSCWP*NPECSGPCMTLGQP Trigger: TGGCTGACCAAGAGTCATGCAAGGGCCGCTGCACTCAGGGTTTCATGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTGCACTTACTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CAA 90 bp | CCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCAAGAGGGACCCATTCTaGAGATCCGTGAAGGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: PTDFLLGWEKEMRLLKLSKRDPF*RSVKAS Trigger: TGACGCCTTCACGGATCTCAAGAATGGGTCCCTCTT...GCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CAA 90 bp | GACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGAGTGAATGCCCCAGACATCTaGGATAAGTTTGGGGTACCC | + |
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Preference number: 5 (lower is better) Translates to: DFLLGWEKEMRLLKLSRVNAPDI*DKFGVP Trigger: GGGTACCCCAAACTTATCCAAGATGTCTGGGGCATT...CACTCGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CAA 90 bp | AACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTCAGCCGACATCTTGGATAAGTTaGGGGTACCCAGGCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: NRLFIGLGERDEAPEAQPTSWIS*GYPGLT Trigger: AGTGAGGCCTGGGTACCCCAAACTTATCCAAGATGT...CGGCTGAGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS-3UTR CAA 90 bp | GTAGCCAACAGACTTTTTATTGGGCTGGGAGAAAGAGATGAGGCTCCTGAAGCTTTAGACTTCTGTTTTTaGGCTTGGGCAGAGTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: VANRLFIGLGERDEAPEALDFCF*AWAEWD Trigger: ATCCCACTCTGCCCAAGCCAAAAAACAGAAGTCTAA...AGCTTCAGGAGCCTCATCTCTTTCTCCCAGCCCAATAAAAAGTCTGTTGGCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 90 bp | ATTTGTCTCCAGAGAAGAAATAGACGCTCTGAATGGGCTCGCAGGTaGCAGGTACAAGCCAGTCCATATCATAATCATAGTTGTTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: ICLQRRNRRSEWARR*QVQASPYHNHSCCR Trigger: CCTACAACAACTATGATTATGATATGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATTTCTTCTCTGGAGACAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | GGTCGGGCAGCCCAGCCAATACTGAGCAATGGAGCGTaGGTAGGGAGGATTCACAGAGTCCACTCGCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: GRAAQPILSNGA*VGRIHRVHSPG Trigger: ACCCGGCGAGTGGACTCTGTGAATCCTCCCTACCCACGCTCCATTGCTCAGTATTGGCTGGGCTGCCCGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | GTAGATGCGGCCGGCCATAGCAGCGTCCACTTTCCCTaGCACACCATGCCAGTTCCGGCTGATGAATTGGGG | + |
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Preference number: 6 (lower is better) Translates to: VDAAGHSSVHFP*HTMPVPADELG Trigger: CCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAAAGTGGACGCTGCTATGGCCGGCCGCATCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 72 bp | CCGGCCACTGTAACGGTGGGCAGGAAGGGCGAACGCTaGATCAACATTGTCTGGTATGCCACTGAAGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: PATVTVGRKGER*INIVWYATEAF Trigger: GAAGGCTTCAGTGGCATACCAGACAATGTTGATGCAGCGTTCGCCCTTCCTGCCCACCGTTACAGTGGCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | TTCCCTGGCACACCATGCCAGTTCCGGCTGATGAATTaGGGTTCTCTGGCTCCATCAGAGGATCTGCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: FPGTPCQFRLMN*GSLAPSEDLPQ Trigger: CTGGGGCAGATCCTCTGATGGAGCCAGAGAACCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | TCTCAGAGGTCGGGCAGCCCAGCCAATACTGAGCAATaGAGCGTGGGTAGGGAGGATTCACAGAGTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: SQRSGSPANTEQ*SVGREDSQSPL Trigger: GAGTGGACTCTGTGAATCCTCCCTACCCACGCTCCATTGCTCAGTATTGGCTGGGCTGCCCGACCTCTGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 72 bp | GAGCTGCCTTCGCACTCCTCCTGGCTGGGTTGCTGCTaGAATTCGTACTCCCAGTACTGCTTCCCCTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: ELPSHSSWLGCC*NSYSQYCFPLK Trigger: CTTCAAGGGGAAGCAGTACTGGGAGTACGAATTTCAGCAGCAACCCAGCCAGGAGGAGTGCGAAGGCAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 72 bp | GGATTTAGGTCACCGGGTGGAGAGGTGTTCTCGGGTTaGACACCGGTGTTGGTATTGTTCTTGGGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GFRSPGGEVFSG*TPVLVLFLGSS Trigger: GGAGGAGCCCAAGAACAATACCAACACCGGTGTGCAACCCGAGAACACCTCTCCACCCGGTGACCTAAATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | GGCGTCAAAGGGCTTTCCACTGCACAGTTCTTCCTCTaGAAACTCAGGGGTCCCTTGATCAGTGGTGTCGGG | + |
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Preference number: 6 (lower is better) Translates to: GVKGLSTAQFFL*KLRGPLISGVG Trigger: CCCGACACCACTGATCAAGGGACCCCTGAGTTTCCAGAGGAAGAACTGTGCAGTGGAAAGCCCTTTGACGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CAA 72 bp | TTTCCCTGGCACACCATGCCAGTTCCGGCTGATGAATaGGGGTTCTCTGGCTCCATCAGAGGATCTGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: FPWHTMPVPADE*GFSGSIRGSAP Trigger: TGGGGCAGATCCTCTGATGGAGCCAGAGAACCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 72 bp | CTGCACAGTTCTTCCTCTGGAAACTCAGGGGTCCCTTaGTCAGTGGTGTCGGGCCTTAGGATCTCCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LHSSSSGNSGVP*SVVSGLRISSC Trigger: ACAGGAGGAGATCCTAAGGCCCGACACCACTGATCAAGGGACCCCTGAGTTTCCAGAGGAAGAACTGTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | GTTCTTCCTCTGGAAACTCAGGGGTCCCTTGATCAGTaGTGTCGGGCCTTAGGATCTCCTCCTGTTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: VLPLETQGSLDQ*CRALGSPPVAP Trigger: TGGAGCAACAGGAGGAGATCCTAAGGCCCGACACCACTGATCAAGGGACCCCTGAGTTTCCAGAGGAAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CAA 72 bp | CAGTACTGCCCTCGGAAGGCAAAGAGGGACCCATTCTaGAGATCCGTGAAGGCGTCAAAGGGCTTTCCACTG | + |
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Preference number: 6 (lower is better) Translates to: QYCPRKAKRDPF*RSVKASKGFPL Trigger: CAGTGGAAAGCCCTTTGACGCCTTCACGGATCTCAAGAATGGGTCCCTCTTTGCCTTCCGAGGGCAGTACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CAA 72 bp | GCCCACTCTCCTCGCTGGAGAACAAAGAGAACCAGATaGAACGTGATGAACGACGGGAGTTCGAGCTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: AHSPRWRTKRTR*NVMNDGSSSSG Trigger: GCCAGAGCTCGAACTCCCGTCGTTCATCACGTTCAATCTGGTTCTCTTTGTTCTCCAGCGAGGAGAGTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS TCA 72 bp | TGCAAAGCTCGTCACACTGACACTTCTTGCTGGCCATaGAACCCTGAGTGCAGCGGCCCTTGCATGACTCTT | + |
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Preference number: 6 (lower is better) Translates to: CKARHTDTSCWP*NPECSGPCMTL Trigger: AAGAGTCATGCAAGGGCCGCTGCACTCAGGGTTTCATGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS GCA 72 bp | GCTCCATGTAGTCGGCACAGCAGCTCTGATAGTAAGTaGAAAGCTCGTCACACTGACACTTCTTGCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: APCSRHSSSDSK*KARHTDTSCWP Trigger: TGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTGCACTTACTATCAGAGCTGCTGTGCCGACTACATGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | TGTTCTCGGGTTGCACACCGGTGTTGGTATTGTTCTTaGGCTCCTCCACGTAGTCATAGCTCCAATAATCAT | + |
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Preference number: 6 (lower is better) Translates to: CSRVAHRCWYCS*APPRSHSSNNH Trigger: ATGATTATTGGAGCTATGACTACGTGGAGGAGCCCAAGAACAATACCAACACCGGTGTGCAACCCGAGAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | AGTATTTGTCTCCAGAGAAGAAATAGACGCTCTGAATaGGCTCGCAGGTGGCAGGTACAAGCCAGTCCATAT | + |
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Preference number: 6 (lower is better) Translates to: SICLQRRNRRSE*ARRWQVQASPY Trigger: ATATGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATTTCTTCTCTGGAGACAAATACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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| CDS CCA 72 bp | CAGAGAAGAAATAGACGCTCTGAATGGGCTCGCAGGTaGCAGGTACAAGCCAGTCCATATCATAATCATAGT | + |
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Preference number: 6 (lower is better) Translates to: QRRNRRSEWARR*QVQASPYHNHS Trigger: ACTATGATTATGATATGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATTTCTTCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017488.5 |
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