Pregenerated sensors for VTI1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021124Ensembl transcript IDs: ENSMUST00000055262.13, ENSMUST00000162569.8, ENSMUST00000162789.9
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAACCATTCATTCAGAGTAAGATGCTGGTCCACAAGGCTTTCCCTACAGAAGTTTCTGTGGCAATCCGATaGGAACGCTCAATGCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: KPFIQSKMLVHKAFPTEVSVAIR*ERSMLW Trigger: CCAAAGCATTGAGCGTTCTCATCGGATTGCCACAGA...AACTTCTGTAGGGAAAGCCTTGTGGACCAGCATCTTACTCTGAATGAATGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162789.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAATTTGATCAGTTTCTGTaGCAATCCGATGAGAACGCT | + |
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Preference number: 2 (lower is better) Translates to: EVFHCPPSHSLTRQYILEFDQFL*QSDENA Trigger: AGCGTTCTCATCGGATTGCCACAGAAACTGATCAAA...TTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162789.9 |
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| 3UTR-3UTR TCA 90 bp | GAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAACCCCCAACTCTTCTATaGTTTCTGTACCAATTTGAT | + |
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Preference number: 2 (lower is better) Translates to: EVFHCPPSHSLTRQYILEPPTLL*FLYQFD Trigger: ATCAAATTGGTACAGAAATCATAGAAGAGTTGGGGG...TTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162789.9 |
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| 3UTR-3UTR CCA 90 bp | TACTGTACTCTGGCACCTTTCACAACAGCATTACAGAGTTGCAAGGCATTCGAACTCCCTTCTCTATTTTaGTCACCAACACTATTACTG | + |
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Preference number: 2 (lower is better) Translates to: YCTLAPFTTALQSCKAFELPSLF*SPTLLL Trigger: CAGTAATAGTGTTGGTGACCAAAATAGAGAAGGGAG...TTCGAATGCCTTGCAACTCTGTAATGCTGTTGTGAAAGGTGCCAGAGTACAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| 3UTR-3UTR CCA 90 bp | GAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAATGGTTATCACTTTTCTaGACATTGAGCGAAGAATCT | + |
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Preference number: 2 (lower is better) Translates to: EVFHCPPSHSLTRQYILEWLSLF*TLSEES Trigger: AGATTCTTCGCTCAATGTCCAGAAAAGTGATAACCA...TTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162789.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAATATGAAATGGCTGTCTaGATCAATATTGCCTTAATG | + |
|
Preference number: 2 (lower is better) Translates to: EVFHCPPSHSLTRQYILEYEMAV*INIALM Trigger: CATTAAGGCAATATTGATCCAGACAGCCATTTCATA...TTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| 3UTR GCA 72 bp | TGTACTCTGGCACCTTTCACAACAGCATTACAGAGTTaGAAGGCATTCGAAGGGACAGATATGAAATGGCTG | + |
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Preference number: 3 (lower is better) Translates to: CTLAPFTTALQS*KAFEGTDMKWL Trigger: CAGCCATTTCATATCTGTCCCTTCGAATGCCTTGCAACTCTGTAATGCTGTTGTGAAAGGTGCCAGAGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| CDS-3UTR TCA 90 bp | GTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAACTGTCTGTGGCAATCCGATaGGAACGCTCAATGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VFHCPPSHSLTRQYILELSVAIR*ERSMLW Trigger: CCAAAGCATTGAGCGTTCTCATCGGATTGCCACAGA...CAGTTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055262.13 ENSMUST00000162569.8 |
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| 3UTR CAA 72 bp | CTGTACTCTGGCACCTTTCACAACAGCATTACAGAGTaGCAAGGCATTCGAAGGGACAGATATGAAATGGCT | + |
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Preference number: 4 (lower is better) Translates to: LYSGTFHNSITE*QGIRRDRYEMA Trigger: AGCCATTTCATATCTGTCCCTTCGAATGCCTTGCAACTCTGTAATGCTGTTGTGAAAGGTGCCAGAGTACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| CDS-3UTR CCA 90 bp | AGCATTACAGAGTTGCAAGGCATTCGAAGGGACAGATATGAAATGGCTGTCTGGTTTGATCAGTTTCTGTaGCAATCCGATGAGAACGCT | + |
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Preference number: 4 (lower is better) Translates to: SITELQGIRRDRYEMAVWFDQFL*QSDENA Trigger: AGCGTTCTCATCGGATTGCCACAGAAACTGATCAAA...CCAGACAGCCATTTCATATCTGTCCCTTCGAATGCCTTGCAACTCTGTAATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| CDS-3UTR CCA 90 bp | TTCGAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTTTTGATCAGTTTCTGTaGCAATCCGATGAGAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: FEVFHCPPSHSLTRQYILFDQFL*QSDENA Trigger: AGCGTTCTCATCGGATTGCCACAGAAACTGATCAAA...AAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTCGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055262.13 ENSMUST00000162569.8 |
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| CDS-3UTR TCA 90 bp | TACTGTACTCTGGCACCTTTCACAACAGCATTACAGAGTTGCAAGGCATTCGAACCCCCAACTCTTCTATaGTTTCTGTACCAATTTGAT | + |
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Preference number: 4 (lower is better) Translates to: YCTLAPFTTALQSCKAFEPPTLL*FLYQFD Trigger: ATCAAATTGGTACAGAAATCATAGAAGAGTTGGGGG...TTCGAATGCCTTGCAACTCTGTAATGCTGTTGTGAAAGGTGCCAGAGTACAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055262.13 |
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| CDS-3UTR CCA 90 bp | GAGGTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAAAGAGCAGCAACTTGTTaGTTATCACTTCTGCTCTTA | + |
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Preference number: 4 (lower is better) Translates to: EVFHCPPSHSLTRQYILERAATC*LSLLLL Trigger: TAAGAGCAGAAGTGATAACCAACAAGTTGCTGCTCT...TTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAACCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162569.8 |
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| CDS-3UTR CAA 90 bp | GTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAACTGACGGAGAGCAGCAACTaGTTGGTTATCACTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: VFHCPPSHSLTRQYILELTESSN*LVITSA Trigger: AGCAGAAGTGATAACCAACAAGTTGCTGCTCTCCGT...CAGTTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162569.8 |
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| CDS-3UTR CAA 90 bp | GTTTTCCATTGCCCTCCCTCCCATAGTCTGACAAGACAATACATTCTTGAACTGGAGAGCAGCAACTTGTaGGTTATCACTTCTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: VFHCPPSHSLTRQYILELESSNL*VITSAL Trigger: AAGAGCAGAAGTGATAACCAACAAGTTGCTGCTCTC...CAGTTCAAGAATGTATTGTCTTGTCAGACTATGGGAGGGAGGGCAATGGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162569.8 |
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| CDS CAA 72 bp | AGCTCCAGCAAGATGATGACGGAGAGCAGCAACTTGTaGGTTATCACTTCTGCTCTTAGTACGTTCCAACTG | + |
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Preference number: 6 (lower is better) Translates to: SSSKMMTESSNL*VITSALSTFQL Trigger: CAGTTGGAACGTACTAAGAGCAGAAGTGATAACCAACAAGTTGCTGCTCTCCGTCATCATCTTGCTGGAGCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162569.8 |
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| CDS CAA 72 bp | GCTAGCTCCAGCAAGATGATGACGGAGAGCAGCAACTaGTTGGTTATCACTTCTGCTCTTAGTACGTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: ASSSKMMTESSN*LVITSALSTFQ Trigger: TTGGAACGTACTAAGAGCAGAAGTGATAACCAACAAGTTGCTGCTCTCCGTCATCATCTTGCTGGAGCTAGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162569.8 |
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