Pregenerated sensors for VTCN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051076Ensembl transcript IDs: ENSMUST00000054791.9
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCAGAAAACTTGAAATGGAGATCAGGCAGCATTTAAGCCAGACTTaGTGTGTGGCACAGAAGGAAGGAAGAGGGATTCAGAAGTACAGT | + |
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Preference number: 1 (lower is better) Translates to: GRKLEMEIRQHLSQT*CVAQKEGRGIQKYS Trigger: ACTGTACTTCTGAATCCCTCTTCCTTCCTTCTGTGCCACACAGCAAGTCTGGCTTAAATGCTGCCTGATCTCCATTTCAAGTTTTCTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CCA 90 bp | GAAGGAAGAGGGATTCAGAAGTACAGTGGGCTGAAGATAATTCCATaGAGAATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATTG | + |
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Preference number: 1 (lower is better) Translates to: EGRGIQKYSGLKIIP*RISHVGSLKDVTQL Trigger: CAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATTCTCCATGGAATTATCTTCAGCCCACTGTACTTCTGAATCCCTCTTCCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CCA 90 bp | TCTTATTCCAGTTCAGGATTTCCTGACCTTGATGTGGTTGGCACTTaGAGTTGTGTAAATTCAGTGAGACACGTAGAATATAATCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: SYSSSGFPDLDVVGT*SCVNSVRHVEYNLC Trigger: ACAGAGATTATATTCTACGTGTCTCACTGAATTTACACAACTCCAAGTGCCAACCACATCAAGGTCAGGAAATCCTGAACTGGAATAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | TTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGCCTCCCCTATGCATTTaGCATTTGCCAGGTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: FPCGFTEGCHTIAEPWVLPPLCI*HLPGGR Trigger: CCTCCCACCTGGCAAATGCCAAATGCATAGGGGAGG...CAAGACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR TCA 90 bp | TATGAGCATCTGAGTGTGATCTCTAGCACCCTGAAAACAAACAGAACCCCTAGAACCAGGGGAGGCCCCTaGGATGTGGGAGGACACCTA | + |
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Preference number: 2 (lower is better) Translates to: YEHLSVISSTLKTNRTPRTRGGP*DVGGHL Trigger: TAGGTGTCCTCCCACATCTCAGGGGCCTCCCCTGGT...TCTAGGGGTTCTGTTTGTTTTCAGGGTGCTAGAGATCACACTCAGATGCTCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CAA 90 bp | CCATGGAGAATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATaGCAGAGCCCTGGGTCTTGGAACAGTAGCCAGAGACTGAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: PWRISHVGSLKDVTQ*QSPGSWNSSQRLKS Trigger: AGACTTCAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATTCTCCATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | AATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTTCCTGACCTTGATGTaGTTGGCACTTGGAGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: NFPCGFTEGCHTIAEPWVFLTLM*LALGVV Trigger: CACAACTCCAAGTGCCAACCACATCAAGGTCAGGAA...GACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR TCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTCTCTGTAGACACCAGTaGCCCTGTTGTCCCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSLCRHQ*PCCPSS Trigger: GGAAGAGGGACAACAGGGTCACTGGTGTCTACAGAG...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTCAGAGCCCTGGGTCTTaGAACAGTAGCCAGAGACTG | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSQSPGS*NSSQRL Trigger: CAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTG...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR GCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTATGCATTTGGCATTTaGCAGGTGGGAGGAGACGCC | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSYAFGI*QVGGDA Trigger: GGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATA...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTGCCAGACTTGCTGTGTaGCACAGAAGGAAGGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSARLAV*HRRKEE Trigger: CTCTTCCTTCCTTCTGTGCCACACAGCAAGTCTGGC...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTCTCCGAATCTCGGAGTaGCAGCTGATTAGCAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSLRISE*QLISSF Trigger: AAAGCTGCTAATCAGCTGCCACTCCGAGATTCGGAG...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTAGACGGACATCATCCTaGTTTACTCCCAGTGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSRRTSS*FTPSVG Trigger: CCCAACACTGGGAGTAAACCAGGATGATGTCCGTCT...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR TCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTCACAAAGCAGCATTTaGGAAATAACAGGGCGCTTG | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSSQSSI*EITGRL Trigger: CAAGCGCCCTGTTATTTCTCAAATGCTGCTTTGTGA...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR TCA 90 bp | CGCCATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTGTGCTGAATATAAAATaGGTATATGGCAGTAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: RHPNFIPQCSISKSMAVFVLNIK*VYGSRN Trigger: GTTCCTACTGCCATATACTCATTTTATATTCAGCAC...AAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATGGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR TCA 90 bp | CAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTTTACAGAGGCAGAAAACTTaGAATGGAGATCAGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QTSSLNAPFQRAWPYFLLQRQKT*NGDQAA Trigger: TGCTGCCTGATCTCCATTTCAAGTTTTCTGCCTCTG...TAAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR GCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTGATTATAGCTCTCCATaGAGGATCGAAAGTAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSDYSSP*RIESRN Trigger: GTTTCTACTTTCGATCCTGCATGGAGAGCTATAATC...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTGATTCAGAAGTACAGTaGGCTGAAGATAATTCCATG | + |
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Preference number: 2 (lower is better) Translates to: HPNFIPQCSISKSMAVFSDSEVQ*AEDNSM Trigger: CATGGAATTATCTTCAGCCCACTGTACTTCTGAATC...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | AAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGGAACAGTAGCCAGAGACTGCCCTCCCCTATGCATTaGGCATTTGCCAGGTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: KDVTQLQSPGSWNSSQRLPSPMH*AFARWE Trigger: CTCCCACCTGGCAAATGCCAAATGCATAGGGGAGGG...CAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTGCAATTGTGTGACATCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CCA 72 bp | CTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTTaGAACAGTAGCCAGAGACTGAAGTCTGTGCCCACT | + |
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Preference number: 3 (lower is better) Translates to: LKDVTQLQSPGS*NSSQRLKSVPT Trigger: AGTGGGCACAGACTTCAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTGCAATTGTGTGACATCCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | AAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGGAACAGTAGCCAGAGACTGCAGGATTTCCTGACCTaGATGTGGTTGGCACTTGGA | + |
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Preference number: 3 (lower is better) Translates to: KDVTQLQSPGSWNSSQRLQDFLT*MWLALG Trigger: TCCAAGTGCCAACCACATCAAGGTCAGGAAATCCTG...CAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTGCAATTGTGTGACATCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR GCA 72 bp | GACTTAAGGCCACATAGCGGGATGAGGAGAGCGCCTTaGCCTGGACTGATTCACAAAGCAGCATTTGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: DLRPHSGMRRAP*PGLIHKAAFEK Trigger: TTTCTCAAATGCTGCTTTGTGAATCAGTCCAGGGCAAGGCGCTCTCCTCATCCCGCTATGTGGCCTTAAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | TTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGTTTTCCTTCCACATCTaGTTCCTGTCTGCTCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: FPCGFTEGCHTIAEPWVLFSFHI*FLSALS Trigger: GGAGAGAGCAGACAGGAACAAGATGTGGAAGGAAAA...CAAGACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR TCA 72 bp | AGCGCCTTGCCCTGGACTGATTCACAAAGCAGCATTTaGGAAATAACAGGGCGCTTGTTTGCTCAAGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: SALPWTDSQSSI*EITGRLFAQGR Trigger: TCTCCCTTGAGCAAACAAGCGCCCTGTTATTTCTCAAATGCTGCTTTGTGAATCAGTCCAGGGCAAGGCGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR GCA 72 bp | AGAATGATGATCACCCTCCCCTATGCATTTGGCATTTaGCAGGTGGGAGGAGACGCCAAAGAGCTTGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: RMMITLPYAFGI*QVGGDAKELVK Trigger: TTTTACAAGCTCTTTGGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAGGGGAGGGTGATCATCATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR GCA 72 bp | CTTGAAATGGAGATCAGGCAGCATTTAAGCCAGACTTaGTGTGTGGCACAGAAGGAAGGAAGAGGGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: LEMEIRQHLSQT*CVAQKEGRGIQ Trigger: CTGAATCCCTCTTCCTTCCTTCTGTGCCACACAGCAAGTCTGGCTTAAATGCTGCCTGATCTCCATTTCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | GTGCCCACTGTCGGGAAGCAAATGGATCTGTTCACATTCATCTTCTGGGTCTTTAGTGATTCGGATGATTaGGGAAATCAGCATCCCTCA | + |
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Preference number: 3 (lower is better) Translates to: VPTVGKQMDLFTFIFWVFSDSDD*GNQHPS Trigger: TGAGGGATGCTGATTTCCCAAATCATCCGAATCACT...AAAGACCCAGAAGATGAATGTGAACAGATCCATTTGCTTCCCGACAGTGGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTTTACTATGCATTTGGCATTaGCCAGGTGGGAGGAGACGC | + |
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Preference number: 3 (lower is better) Translates to: QTSSLNAPFQRAWPYFLLLCIWH*PGGRRR Trigger: GCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAG...TAAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTTTAGATGAGGAGAGCGCCTaGCCCTGGACTGATTCACAA | + |
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Preference number: 3 (lower is better) Translates to: QTSSLNAPFQRAWPYFLLDEESA*PWTDSQ Trigger: TTGTGAATCAGTCCAGGGCAAGGCGCTCTCCTCATC...TAAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CCA 72 bp | GGGATTCAGAAGTACAGTGGGCTGAAGATAATTCCATaGAGAATTTCCCATGTGGGTTCACTGAAGGATGTC | + |
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Preference number: 3 (lower is better) Translates to: GIQKYSGLKIIP*RISHVGSLKDV Trigger: GACATCCTTCAGTGAACCCACATGGGAAATTCTCCATGGAATTATCTTCAGCCCACTGTACTTCTGAATCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | CATCTGAGTGTGATCTCTAGCACCCTGAAAACAAACAGAACCCCTAGAAGTCTCGTCTGTGGGTTACTTTaGTTTTCCTTCCACATCTTG | + |
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Preference number: 3 (lower is better) Translates to: HLSVISSTLKTNRTPRSLVCGLL*FSFHIL Trigger: CAAGATGTGGAAGGAAAACAAAAGTAACCCACAGAC...GAGACTTCTAGGGGTTCTGTTTGTTTTCAGGGTGCTAGAGATCACACTCAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | TATGAGCATCTGAGTGTGATCTCTAGCACCCTGAAAACAAACAGAACCCCTAGATTCACAAAGCAGCATTaGAGAAATAACAGGGCGCTT | + |
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Preference number: 3 (lower is better) Translates to: YEHLSVISSTLKTNRTPRFTKQH*RNNRAL Trigger: AAGCGCCCTGTTATTTCTCAAATGCTGCTTTGTGAA...TCTAGGGGTTCTGTTTGTTTTCAGGGTGCTAGAGATCACACTCAGATGCTCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTTTACCAGAGGCAGAAAACTaGAAATGGAGATCAGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: QTSSLNAPFQRAWPYFLLPEAEN*KWRSGS Trigger: GCTGCCTGATCTCCATTTCAAGTTTTCTGCCTCTGG...TAAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CCA 72 bp | AGTTCAGGATTTCCTGACCTTGATGTGGTTGGCACTTaGAGTTGTGTAAATTCAGTGAGACACGTAGAATAT | + |
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Preference number: 3 (lower is better) Translates to: SSGFPDLDVVGT*SCVNSVRHVEY Trigger: ATATTCTACGTGTCTCACTGAATTTACACAACTCCAAGTGCCAACCACATCAAGGTCAGGAAATCCTGAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTTTTAGGTTGGCACTTGGAGTaGTGTAAATTCAGTGAGACA | + |
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Preference number: 3 (lower is better) Translates to: QTSSLNAPFQRAWPYFLLGWHLE*CKFSET Trigger: TGTCTCACTGAATTTACACAACTCCAAGTGCCAACC...TAAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR GCA 72 bp | AGAAGTTTTCTTCGCCATCCAAACTTCATCCCTCAATaGTCCATTTCAAAGAGCATGGCCGTATTTTCTTTT | + |
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Preference number: 3 (lower is better) Translates to: RSFLRHPNFIPQ*SISKSMAVFSF Trigger: AAAAGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATGGCGAAGAAAACTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CCA 90 bp | TATGAGCATCTGAGTGTGATCTCTAGCACCCTGAAAACAAACAGAACCCCTAGACAGGCCACTGTGGGCTaGGGGAACCACCGAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: YEHLSVISSTLKTNRTPRQATVG*GNHRGA Trigger: GGCTCCTCGGTGGTTCCCCCAGCCCACAGTGGCCTG...TCTAGGGGTTCTGTTTGTTTTCAGGGTGCTAGAGATCACACTCAGATGCTCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | AAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGGAACAGTAGCCAGAGACTGCCAGCATCCGTGAGCTaGACGTTTTTCAGTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: KDVTQLQSPGSWNSSQRLPASVS*TFFSLR Trigger: CCTGAGACTGAAAAACGTGCAGCTCACGGATGCTGG...CAGTCTCTGGCTACTGTTCCAAGACCCAGGGCTCTGCAATTGTGTGACATCCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | CTATGCATTTGGCATTTGCCAGGTGGGAGGAGACGCCAAAGAGCTTGTAAAAGCCCTCTGAACATCTCATaGTGCTGTGAGAGGTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: LCIWHLPGGRRRQRACKSPLNIS*CCERSS Trigger: AGACGACCTCTCACAGCAGCATGAGATGTTCAGAGG...GCTTTTACAAGCTCTTTGGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | TATGAGCATCTGAGTGTGATCTCTAGCACCCTGAAAACAAACAGAACCCCTAGATTGGTCGACTTGAGATaGCCAGGCCACTGTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: YEHLSVISSTLKTNRTPRLVDLR*PGHCGL Trigger: CAGCCCACAGTGGCCTGGGCATCTCAAGTCGACCAA...TCTAGGGGTTCTGTTTGTTTTCAGGGTGCTAGAGATCACACTCAGATGCTCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | GTGCCCACTGTCGGGAAGCAAATGGATCTGTTCACATTCATCTTCTGGGTCTTTTTGCCAACTACCACCTaGTCAGCAAACACTGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: VPTVGKQMDLFTFIFWVFLPTTT*SANTAV Trigger: CACAGCAGTGTTTGCTGATCAGGTGGTAGTTGGCAA...AAAGACCCAGAAGATGAATGTGAACAGATCCATTTGCTTCCCGACAGTGGGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | TTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTTGTCGCCTTTTGACCTCTaGATCTGTCACTTTGATGTC | + |
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Preference number: 4 (lower is better) Translates to: FPCGFTEGCHTIAEPWVLSPFDL*ICHFDV Trigger: GACATCAAAGTGACAGATTCAGAGGTCAAAAGGCGA...CAAGACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | CGCCATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTGTCAGGTTCAAAAGTaGAGCTCAGGGTCCCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RHPNFIPQCSISKSMAVFCQVQK*SSGSRP Trigger: AGGACGGGACCCTGAGCTGCACTTTTGAACCTGACA...AAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CAA 72 bp | CATCTTGTTCCGATCGGGGGTGTCTGTGGGTTACTTTaGTTTTCCTTCCACATCTTGTTCCTGTCTGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HLVPIGGVCGLL*FSFHILFLSAL Trigger: GAGAGCAGACAGGAACAAGATGTGGAAGGAAAACAAAAGTAACCCACAGACACCCCCGATCGGAACAAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | AATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCGATGAAGTGCTTGCCTaGAATGCCAAAGCCAATGAT | + |
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Preference number: 4 (lower is better) Translates to: NFPCGFTEGCHTIAEPWVDEVLA*NAKAND Trigger: ATCATTGGCTTTGGCATTTCAGGCAAGCACTTCATC...GACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | AATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCATTCCCTTTGCCTTTTaGGGTGCGGATGTAACATGT | + |
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Preference number: 4 (lower is better) Translates to: NFPCGFTEGCHTIAEPWVIPFAF*GADVTC Trigger: ACATGTTACATCCGCACCTCAAAAGGCAAAGGGAAT...GACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | CCCTATGCATTTGGCATTTGCCAGGTGGGAGGAGACGCCAAAGAGCTTGTAAAATTATCTCTGGCATACTaGAGGCTCCGGTCTTATACT | + |
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Preference number: 4 (lower is better) Translates to: PYAFGICQVGGDAKELVKLSLAY*RLRSYT Trigger: AGTATAAGACCGGAGCCTTCAGTATGCCAGAGATAA...TTTTACAAGCTCTTTGGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CCA 90 bp | CTATGCATTTGGCATTTGCCAGGTGGGAGGAGACGCCAAAGAGCTTGTAAAAGCAGACTTCTGAGAAATTaGCTCCTTGGTCGACTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LCIWHLPGGRRRQRACKSRLLRN*LLGRLE Trigger: CTCAAGTCGACCAAGGAGCCAATTTCTCAGAAGTCT...GCTTTTACAAGCTCTTTGGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CCA 90 bp | GTGCCCACTGTCGGGAAGCAAATGGATCTGTTCACATTCATCTTCTGGGTCTTTCCTTCTTTGAACTCGTaGACCAAACCTTTGATGCCT | + |
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Preference number: 4 (lower is better) Translates to: VPTVGKQMDLFTFIFWVFPSLNS*TKPLMP Trigger: AGGCATCAAAGGTTTGGTCCACGAGTTCAAAGAAGG...AAAGACCCAGAAGATGAATGTGAACAGATCCATTTGCTTCCCGACAGTGGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR TCA 90 bp | AGGTCATGTCTTGAGGAAAATATTTCTGTAGTTCTCCGGGATTCTGTTGGACCACGTGGACCAAACCTTTaGTGCCTTCTTTCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: RSCLEENISVVLRDSVGPRGPNL*CLLSAT Trigger: AGTGGCTGAAAGAAGGCATCAAAGGTTTGGTCCACG...TGGTCCAACAGAATCCCGGAGAACTACAGAAATATTTTCCTCAAGACATGACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CCA 90 bp | AGGTCATGTCTTGAGGAAAATATTTCTGTAGTTCTCCGGGATTCTGTTGGACCACCTTCTTTCAGCCACTaGATGACGATGCCGTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: RSCLEENISVVLRDSVGPPSFSH*MTMPLS Trigger: ACTCAACGGCATCGTCATCCAGTGGCTGAAAGAAGG...TGGTCCAACAGAATCCCGGAGAACTACAGAAATATTTTCCTCAAGACATGACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | CATCCAAACTTCATCCCTCAATGCTCCATTTCAAAGAGCATGGCCGTATTTTCTGTGACCGTGATGAAGTaGTTGCCTGAAATGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: HPNFIPQCSISKSMAVFSVTVMK*LPEMPK Trigger: CTTTGGCATTTCAGGCAAGCACTTCATCACGGTCAC...AGAAAATACGGCCATGCTCTTTGAAATGGAGCATTGAGGGATGAAGTTTGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR GCA 90 bp | AGGTCATGTCTTGAGGAAAATATTTCTGTAGTTCTCCGGGATTCTGTTGGACCAGGTTTGCATTCCCTTTaGCTTTTGAGGTGCGGATGT | + |
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Preference number: 4 (lower is better) Translates to: RSCLEENISVVLRDSVGPGLHSL*LLRCGC Trigger: ACATCCGCACCTCAAAAGGCAAAGGGAATGCAAACC...TGGTCCAACAGAATCCCGGAGAACTACAGAAATATTTTCCTCAAGACATGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CAA 72 bp | CGCTTGTTTGCTCAAGGGAGAAGTGATTCGGATGATTaGGGAAATCAGCATCCCTCAACTATTTTGTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RLFAQGRSDSDD*GNQHPSTILFA Trigger: GGCAAACAAAATAGTTGAGGGATGCTGATTTCCCAAATCATCCGAATCACTTCTCCCTTGAGCAAACAAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| 3UTR CAA 72 bp | ACACACATTGTAACAGCACACTTAGTATACTCTAGTTaGGTTGAATTATTTTCTAGGTCCATCTTGTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: THIVTAHLVYSS*VELFSRSILFR Trigger: TCGGAACAAGATGGACCTAGAAAATAATTCAACCAAACTAGAGTATACTAAGTGTGCTGTTACAATGTGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CAA 90 bp | AATTTCCCATGTGGGTTCACTGAAGGATGTCACACAATTGCAGAGCCCTGGGTCTCGTGGACCAAACCTTaGATGCCTTCTTTCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: NFPCGFTEGCHTIAEPWVSWTKP*MPSFSH Trigger: GTGGCTGAAAGAAGGCATCAAAGGTTTGGTCCACGA...GACCCAGGGCTCTGCAATTGTGTGACATCCTTCAGTGAACCCACATGGGAAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS-3UTR CAA 90 bp | CCCTATGCATTTGGCATTTGCCAGGTGGGAGGAGACGCCAAAGAGCTTGTAAAAACGATGCCGTTGAGTTaGATGTCAGGTTCAAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: PYAFGICQVGGDAKELVKTMPLS*MSGSKV Trigger: CACTTTTGAACCTGACATCAAACTCAACGGCATCGT...TTTTACAAGCTCTTTGGCGTCTCCTCCCACCTGGCAAATGCCAAATGCATAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS TCA 72 bp | GCAGCTCAGGGTCCCGTCCTCTCCAATGTTTCCAGCTaGGGTGAAGGTCGTGACCGTGATGAAGTGCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: AAQGPVLSNVSS*GEGRDRDEVLA Trigger: GGCAAGCACTTCATCACGGTCACGACCTTCACCTCAGCTGGAAACATTGGAGAGGACGGGACCCTGAGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS TCA 72 bp | GTTCAGCAACTGCAGCTGACTTCGCCTTTTGACCTCTaGATCTGTCACTTTGATGTCCCCGGTGGCTTTGGC | + |
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Preference number: 6 (lower is better) Translates to: VQQLQLTSPFDL*ICHFDVPGGFG Trigger: GCCAAAGCCACCGGGGACATCAAAGTGACAGATTCAGAGGTCAAAAGGCGAAGTCAGCTGCAGTTGCTGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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| CDS TCA 72 bp | ACACACGGGGAAGGCCCAGAGTTCAGCAACTGCAGCTaGCTTCGCCTTTTGACCTCTGAATCTGTCACTTTG | + |
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Preference number: 6 (lower is better) Translates to: THGEGPEFSNCS*LRLLTSESVTL Trigger: CAAAGTGACAGATTCAGAGGTCAAAAGGCGAAGTCAGCTGCAGTTGCTGAACTCTGGGCCTTCCCCGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054791.9 |
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