Pregenerated sensors for VTA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019868Ensembl transcript IDs: ENSMUST00000020018.12, ENSMUST00000133927.2, ENSMUST00000154132.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCGGATATCCCCCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTaGAGCAGCTGGGACAGTCTGTGGACTAGGCTGGACGGCATTACT | + |
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Preference number: 1 (lower is better) Translates to: ADIPLGSCVQVRINS*SSWDSLWTRLDGIT Trigger: AGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGGGATATCCGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 90 bp | TCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTGGACTAGGCTaGACGGCATTACTCGTTACACCTGTGCTGTGTGGCACTTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: SGSTAGAAGTVCGLG*TALLVTPVLCGTSA Trigger: TGCAGAAGTGCCACACAGCACAGGTGTAACGAGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 90 bp | AGTCATGTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTaGATTCTTTGTGATGTTGACAGTTCAGTCACTATGTACATCTGT | + |
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Preference number: 1 (lower is better) Translates to: SHVYFMRALFRRCTL*ILCDVDSSVTMYIC Trigger: ACAGATGTACATAGTGACTGAACTGTCAACATCACAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAACATGACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR-3UTR CCA 90 bp | TGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGGCTGAGGTGGCTGAGTaGGCAGAGAGGTTGCGCCAA | + |
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Preference number: 2 (lower is better) Translates to: CLPRGTEAFCSPLLLKAEAEVAE*AERLRQ Trigger: TTGGCGCAACCTCTCTGCCCACTCAGCCACCTCAGC...CTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGAGCTCTAGCGAAGTCCTCCGGGGTCAGGCGGATATCCCCCTGGGAAGCTACTCGTTACACCTGTaGTGTGTGGCACTTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LLSSSEVLRGQADIPLGSYSLHL*CVALLQ Trigger: CTGCAGAAGTGCCACACAGCACAGGTGTAACGAGTA...GCTTCCCAGGGGGATATCCGCCTGACCCCGGAGGACTTCGCTAGAGCTCAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR CCA 90 bp | CACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCAGGCGGATATCCCCCTaGGAAGCTGTGTACAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: HRSHCLPRGTEAFCSPLLRRISP*EAVYRS Trigger: TGACCTGTACACAGCTTCCCAGGGGGATATCCGCCT...GAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR CCA 90 bp | CACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCACTGTAATTGCCAGTaGGCAGGAGGAGTCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: HRSHCLPRGTEAFCSPLLHCNCQ*AGGVPG Trigger: TCCTGGGACTCCTCCTGCCCACTGGCAATTACAGTG...GAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGGGCACTGCCAGCATACTTGCAGTACTTCTGAGCTCTAGCGAAGTCCTCGCTGTGTGGCACTTCTaGAGGGGTATTAGCTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: LQGTASILAVLLSSSEVLAVWHF*RGISWS Trigger: GCTCCAGCTAATACCCCTGCAGAAGTGCCACACAGC...GAGGACTTCGCTAGAGCTCAGAAGTACTGCAAGTATGCTGGCAGTGCCCTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR CCA 90 bp | CACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCTACACCTGTGCTGTGTaGCACTTCTGCAGGGGTATT | + |
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Preference number: 2 (lower is better) Translates to: HRSHCLPRGTEAFCSPLLYTCAV*HFCRGI Trigger: AATACCCCTGCAGAAGTGCCACACAGCACAGGTGTA...GAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR GCA 90 bp | GCGGTGCCCACATCTTCATACTGCAGGGCACTGCCAGCATACTTGCAGTACTTCTATTCCAACAGGGCCTaGTTGAGGAGTCTCCCCATT | + |
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Preference number: 2 (lower is better) Translates to: AVPTSSYCRALPAYLQYFYSNRA*LRSLPI Trigger: AATGGGGAGACTCCTCAAGCAGGCCCTGTTGGAATA...GAAGTACTGCAAGTATGCTGGCAGTGCCCTGCAGTATGAAGATGTGGGCACCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR TCA 90 bp | TGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGTTGATCATGTTTTTGTaGAATCGTCCAGCTCGATCT | + |
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Preference number: 2 (lower is better) Translates to: CLPRGTEAFCSPLLLKAELIMFL*NRPARS Trigger: AGATCGAGCTGGACGATTTCACAAAAACATGATCAA...CTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR TCA 90 bp | CTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGGAACAGTGTAGAAGGACTTaGTCATGTTTTTGTGAAATC | + |
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Preference number: 2 (lower is better) Translates to: LPRGTEAFCSPLLLKAEEQCRRT*SCFCEI Trigger: GATTTCACAAAAACATGATCAAGTCCTTCTACACTG...TTCCTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR GCA 90 bp | ATGCTTCTGAACCACACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTACTGTTAGTTCTCTATaGGGAAAACACTGGCTTCCG | + |
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Preference number: 2 (lower is better) Translates to: MLLNHTGVIVFLGELRPSTVSSL*GKHWLP Trigger: CGGAAGCCAGTGTTTTCCGCATAGAGAACTAACAGT...AGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTGTGGTTCAGAAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020018.12 ENSMUST00000154132.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGGCTGGACGGCATTACTCGTTACACCTGTGCTGTGTGGCACTTCTGCAGGGGTTATGAATATATGTTaGCTTCCACCTTGCATACTT | + |
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Preference number: 2 (lower is better) Translates to: LGWTALLVTPVLCGTSAGVMNIC*LPPCIL Trigger: AAGTATGCAAGGTGGAAGGCAACATATATTCATAAC...CCCTGCAGAAGTGCCACACAGCACAGGTGTAACGAGTAATGCCGTCCAGCCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR GCA 90 bp | ATGCTTCTGAACCACACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTTTCCTGTGCTAAATaGAGCCCTTTCTTCACTTTT | + |
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Preference number: 2 (lower is better) Translates to: MLLNHTGVIVFLGELRPSVSCAK*SPFFTF Trigger: AAAAGTGAAGAAAGGGCTGCATTTAGCACAGGAAAC...AGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTGTGGTTCAGAAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR-3UTR TCA 90 bp | TCATGTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTGGATTCTTTGCCTGCTCCTGAAGGCTaGGGAAAGTGTAACGGACTG | + |
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Preference number: 2 (lower is better) Translates to: SCLFHESTFQEMYFVDSLPAPEG*GKCNGL Trigger: CAGTCCGTTACACTTTCCTCAGCCTTCAGGAGCAGG...CAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAACATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR CAA 90 bp | TTAATCTCTCTTATCATTTACCACTTTTGGATGTTCACATTTGCCTaGCAAATCCTAAGGGAAGAAAAAGTCAGGATCTCCAACCCGGAC | + |
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Preference number: 2 (lower is better) Translates to: LISLIIYHFWMFTFA*QILREEKVRISNPD Trigger: GTCCGGGTTGGAGATCCTGACTTTTTCTTCCCTTAGGATTTGCAAGGCAAATGTGAACATCCAAAAGTGGTAAATGATAAGAGAGATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR-3UTR CCA 90 bp | TCATGTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTGGATTCTTTGATCATTTACCACTTTTaGATGTTCACATTTGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: SCLFHESTFQEMYFVDSLIIYHF*MFTFAL Trigger: CAAGGCAAATGTGAACATCCAAAAGTGGTAAATGAT...CAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAACATGA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR TCA 72 bp | AACAGAGGCTTCACTCCCTGCCTGTGGTCAGCAGCCTaGGGGCCTTCTGGAGGTTCTGCACAGCGGTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: NRGFTPCLWSAA*GPSGGSAQRCP Trigger: TGGGCACCGCTGTGCAGAACCTCCAGAAGGCCCTCAGGCTGCTGACCACAGGCAGGGAGTGAAGCCTCTGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR GCA 72 bp | CCTGTGGTCAGCAGCCTGAGGGCCTTCTGGAGGTTCTaGACAGCGGTGCCCACATCTTCATACTGCAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: PVVSSLRAFWRF*TAVPTSSYCRA Trigger: TGCCCTGCAGTATGAAGATGTGGGCACCGCTGTGCAGAACCTCCAGAAGGCCCTCAGGCTGCTGACCACAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 72 bp | CCCCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTaGAGCAGCTGGGACAGTCTGTGGACTAGGCTGGAC | + |
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Preference number: 3 (lower is better) Translates to: PLGSCVQVRINS*SSWDSLWTRLD Trigger: GTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020018.12 ENSMUST00000133927.2 |
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| 3UTR CCA 72 bp | CTAGCGAAGTCCTCCGGGGTCAGGCGGATATCCCCCTaGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: LAKSSGVRRISP*EAVYRSGSTAG Trigger: TCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGGGATATCCGCCTGACCCCGGAGGACTTCGCTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR CAA 90 bp | CTTCTGAGCTCTAGCGAAGTCCTCCGGGGTCAGGCGGATATCCCCCTGGGAAGCGAGTGGGCAGAGAGGTaGCGCCAACATCTTCATTTT | + |
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Preference number: 3 (lower is better) Translates to: LLSSSEVLRGQADIPLGSEWAER*RQHLHF Trigger: AAAATGAAGATGTTGGCGCAACCTCTCTGCCCACTC...GCTTCCCAGGGGGATATCCGCCTGACCCCGGAGGACTTCGCTAGAGCTCAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 72 bp | ACAGCTGGAGCAGCTGGGACAGTCTGTGGACTAGGCTaGACGGCATTACTCGTTACACCTGTGCTGTGTGGC | + |
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Preference number: 3 (lower is better) Translates to: TAGAAGTVCGLG*TALLVTPVLCG Trigger: GCCACACAGCACAGGTGTAACGAGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR TCA 72 bp | TACTGCAGGGCACTGCCAGCATACTTGCAGTACTTCTaGGCTCTAGCGAAGTCCTCCGGGGTCAGGCGGATA | + |
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Preference number: 3 (lower is better) Translates to: YCRALPAYLQYF*ALAKSSGVRRI Trigger: TATCCGCCTGACCCCGGAGGACTTCGCTAGAGCTCAGAAGTACTGCAAGTATGCTGGCAGTGCCCTGCAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 72 bp | GTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTaGACTAGGCTGGACGGCATTACTCGTTACACCTGT | + |
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Preference number: 3 (lower is better) Translates to: VRINSWSSWDSL*TRLDGITRYTC Trigger: ACAGGTGTAACGAGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR TCA 72 bp | ACTGTTAGTTCTCTATGCGGAAAACACTGGCTTCCGTaGACAGAGGCTTCACTCCCTGCCTGTGGTCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TVSSLCGKHWLP*TEASLPACGQQ Trigger: CTGCTGACCACAGGCAGGGAGTGAAGCCTCTGTTCACGGAAGCCAGTGTTTTCCGCATAGAGAACTAACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR GCA 72 bp | GAATCTGTATGCCACTGTAGCTGCCTGGTGCCAAGTTaGTTGGGTCGTATGCTGAAGATGATGATGGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: ESVCHCSCLVPS*LGRMLKMMMAE Trigger: CTCAGCCATCATCATCTTCAGCATACGACCCAAGCAACTTGGCACCAGGCAGCTACAGTGGCATACAGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR-3UTR CAA 90 bp | CACAGGAGTCATTGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCATGTTCACATTTGCCTaGCAAATCCTAAGGGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: HRSHCLPRGTEAFCSPLLMFTFA*QILREE Trigger: TTCTTCCCTTAGGATTTGCAAGGCAAATGTGAACAT...GAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACAATGACTCCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR TCA 72 bp | TTGCCAGTGGGCAGGAGGAGTCCCAGGAAACCAGTGTaGTTTTCCAGTACAATGATTCTATCACTCCACATG | + |
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Preference number: 3 (lower is better) Translates to: LPVGRRSPRKPV*FSSTMILSLHM Trigger: CATGTGGAGTGATAGAATCATTGTACTGGAAAATCACACTGGTTTCCTGGGACTCCTCCTGCCCACTGGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR-3UTR CAA 90 bp | CTGCAGGGCACTGCCAGCATACTTGCAGTACTTCTGAGCTCTAGCGAAGTCCTCAGTTATGAATATATGTaGCCTTCCACCTTGCATACT | + |
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Preference number: 3 (lower is better) Translates to: LQGTASILAVLLSSSEVLSYEYM*PSTLHT Trigger: AGTATGCAAGGTGGAAGGCAACATATATTCATAACT...GAGGACTTCGCTAGAGCTCAGAAGTACTGCAAGTATGCTGGCAGTGCCCTGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| 3UTR CCA 72 bp | TATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTaGATTCTTTGTGATGTTGACAGTTCAGTCACTATG | + |
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Preference number: 3 (lower is better) Translates to: YFMRALFRRCTL*ILCDVDSSVTM Trigger: CATAGTGACTGAACTGTCAACATCACAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | GGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTGGGCTGAGGTGGCTGAGTaGGCAGAGAGGTTGCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GSCVQVRINSWSSWDSLWAEVAE*AERLRQ Trigger: TTGGCGCAACCTCTCTGCCCACTCAGCCACCTCAGC...CCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR GCA 90 bp | CCCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCGCTGTGTGGCACTTCTaGAGGGGTATTAGCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PWEAVYRSGSTAGAAGTVAVWHF*RGISWS Trigger: GCTCCAGCTAATACCCCTGCAGAAGTGCCACACAGC...GACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR CCA 90 bp | GGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTGGCCACTGTAGCTGCCTaGTGCCAAGTTGCTTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: GKLCTGQDQQLEQLGQSVATVAA*CQVAWV Trigger: GACCCAAGCAACTTGGCACCAGGCAGCTACAGTGGC...CACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR CCA 90 bp | GAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGGAAACCGCTGAGGTGGCTGAGTaGGCAGAGAGGTTGCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: EGEQYTVIASGQEESQETAEVAE*AERLRQ Trigger: TTGGCGCAACCTCTCTGCCCACTCAGCCACCTCAGC...GGTTTCCTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | CCCCCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTACACCTGTGCTGTGTaGCACTTCTGCAGGGGTATT | + |
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Preference number: 4 (lower is better) Translates to: PPGKLCTGQDQQLEQLGQYTCAV*HFCRGI Trigger: AATACCCCTGCAGAAGTGCCACACAGCACAGGTGTA...CTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR GCA 90 bp | GCTGCTGATGAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCTGTATGCTCTTAAACTaGGCGGGCAGCGGCGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: AADEGEQYTVIASGQEESCMLLN*AGSGGR Trigger: TCTGCCGCCGCTGCCCGCGCAGTTTAAGAGCATACA...GGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTCATCAGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | CCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTCTGGAGGAATCTGTATaGCACTGTAGCTGCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PGKLCTGQDQQLEQLGQSLEESV*HCSCLV Trigger: CACCAGGCAGCTACAGTGGCATACAGATTCCTCCAG...AGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR GCA 90 bp | TGTCTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGTATTCCAACAGGGCCTaGTTGAGGAGTCTCCCCATT | + |
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Preference number: 4 (lower is better) Translates to: CLPRGTEAFCSPLLLKAEYSNRA*LRSLPI Trigger: AATGGGGAGACTCCTCAAGCAGGCCCTGTTGGAATA...CTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | GAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGGAAACCGCCACTGTAGCTGCCTaGTGCCAAGTTGCTTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: EGEQYTVIASGQEESQETATVAA*CQVAWV Trigger: GACCCAAGCAACTTGGCACCAGGCAGCTACAGTGGC...GGTTTCCTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR TCA 90 bp | GCTGATGAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGCCAACAGGGCCTGCTTaGGGAGTCTCCCCATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: ADEGEQYTVIASGQEESQPTGPA*GVSPFF Trigger: AAAGAATGGGGAGACTCCTCAAGCAGGCCCTGTTGG...CTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTCATCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | GCTGATGAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGGTCAGGATCAACAGCTaGAGCAGCTGGGACAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: ADEGEQYTVIASGQEESQVRINS*SSWDSL Trigger: CAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGAC...CTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTCATCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | GCTGATGAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGGGTTCTGCACAGCGGTaGCCACATCTTCATACTGCA | + |
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Preference number: 4 (lower is better) Translates to: ADEGEQYTVIASGQEESQGSAQR*PHLHTA Trigger: TGCAGTATGAAGATGTGGGCACCGCTGTGCAGAACC...CTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTCATCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR CAA 72 bp | TCTGTATGCCACTGTAGCTGCCTGGTGCCAAGTTGCTaGGGTCGTATGCTGAAGATGATGATGGCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SVCHCSCLVPSC*GRMLKMMMAEV Trigger: CACCTCAGCCATCATCATCTTCAGCATACGACCCAAGCAACTTGGCACCAGGCAGCTACAGTGGCATACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020018.12 |
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| CDS-3UTR TCA 90 bp | GCTGATGAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGTACTTGCAGTACTTCTaGGCTCTAGCGAAGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ADEGEQYTVIASGQEESQYLQYF*ALAKSS Trigger: GGAGGACTTCGCTAGAGCTCAGAAGTACTGCAAGTA...CTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTCATCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | TGGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGTCTGTAGTGGGCAGAGAGGTTaGGCCAACATCTTCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: WEAVYRSGSTAGAAGTVCSGQRG*ANIFIF Trigger: GAAAATGAAGATGTTGGCGCAACCTCTCTGCCCACT...ACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR GCA 90 bp | GCATATTATACCCAACATGATTTTCTACAGGGACATTTCACAGCGGGTTCGATGTGTATGCTCTTAAACTaGGCGGGCAGCGGCGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: AYYTQHDFLQGHFTAGSMCMLLN*AGSGGR Trigger: TCTGCCGCCGCTGCCCGCGCAGTTTAAGAGCATACA...CATCGAACCCGCTGTGAAATGTCCCTGTAGAAAATCATGTTGGGTATAATATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020018.12 ENSMUST00000154132.8 |
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| CDS-3UTR TCA 90 bp | GTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTGGATTCTTTGTGATCTGTGGTCAGCAGCCTaGGGGCCTTCTGGAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VYFMRALFRRCTLWILCDLWSAA*GPSGGS Trigger: AGAACCTCCAGAAGGCCCTCAGGCTGCTGACCACAG...ATCACAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | GCATATTATACCCAACATGATTTTCTACAGGGACATTTCACAGCGGGTTCGATGCATACTGCAGGGCACTaGCAGCATACTTGCAGTACT | + |
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Preference number: 4 (lower is better) Translates to: AYYTQHDFLQGHFTAGSMHTAGH*QHTCST Trigger: AGTACTGCAAGTATGCTGGCAGTGCCCTGCAGTATG...CATCGAACCCGCTGTGAAATGTCCCTGTAGAAAATCATGTTGGGTATAATATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | ATGCAGCCCTTTCTTCACTTTTTCATACATACATTAGCTGCTGATGAAGGAGAGTACTCGTTACACCTGTaGTGTGTGGCACTTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: MQPFLHFFIHTLAADEGEYSLHL*CVALLQ Trigger: CTGCAGAAGTGCCACACAGCACAGGTGTAACGAGTA...CTCTCCTTCATCAGCAGCTAATGTATGTATGAAAAAGTGAAGAAAGGGCTGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | GGATTCTTTGTGATGTTGACAGTTCAGTCACTATGTACATCTGTTCTATCAAACAACAGCTGGAGCAGCTaGGACAGTCTGTGGACTAGG | + |
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Preference number: 4 (lower is better) Translates to: GFFVMLTVQSLCTSVLSNNSWSS*DSLWTR Trigger: CCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTT...GTTTGATAGAACAGATGTACATAGTGACTGAACTGTCAACATCACAAAGAATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CCA 90 bp | TATCATTTACCACTTTTGGATGTTCACATTTGCCTTGCAAATCCTAAGGGAAGAAGGCGGATATCCCCCTaGGAAGCTGTGTACAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: YHLPLLDVHICLANPKGRRRISP*EAVYRS Trigger: TGACCTGTACACAGCTTCCCAGGGGGATATCCGCCT...TCTTCCCTTAGGATTTGCAAGGCAAATGTGAACATCCAAAAGTGGTAAATGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | TCATGTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTTGTGGATTCTTTGGCTGTGTGGCACTTCTaGAGGGGTATTAGCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SCLFHESTFQEMYFVDSLAVWHF*RGISWS Trigger: GCTCCAGCTAATACCCCTGCAGAAGTGCCACACAGC...CAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAACATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | TATCATTTACCACTTTTGGATGTTCACATTTGCCTTGCAAATCCTAAGGGAAGAAGTGGGCAGAGAGGTTaGGCCAACATCTTCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: YHLPLLDVHICLANPKGRSGQRG*ANIFIF Trigger: GAAAATGAAGATGTTGGCGCAACCTCTCTGCCCACT...TCTTCCCTTAGGATTTGCAAGGCAAATGTGAACATCCAAAAGTGGTAAATGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR GCA 90 bp | GCATATTATACCCAACATGATTTTCTACAGGGACATTTCACAGCGGGTTCGATGGTTATGAATATATGTTaGCTTCCACCTTGCATACTT | + |
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Preference number: 4 (lower is better) Translates to: AYYTQHDFLQGHFTAGSMVMNIC*LPPCIL Trigger: AAGTATGCAAGGTGGAAGGCAACATATATTCATAAC...CATCGAACCCGCTGTGAAATGTCCCTGTAGAAAATCATGTTGGGTATAATATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR TCA 90 bp | GTACTTTGTGGATTCTTTGTGATGTTGACAGTTCAGTCACTATGTACATCTGTTTTGATCATGTTTTTGTaGAATCGTCCAGCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: VLCGFFVMLTVQSLCTSVLIMFL*NRPARS Trigger: AGATCGAGCTGGACGATTTCACAAAAACATGATCAA...AACAGATGTACATAGTGACTGAACTGTCAACATCACAAAGAATCCACAAAGTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR CAA 72 bp | GTTTATTTCATGAGAGCACTTTTCAGGAGATGTACTTaGTGGATTCTTTGTGATGTTGACAGTTCAGTCACT | + |
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Preference number: 4 (lower is better) Translates to: VYFMRALFRRCT*WILCDVDSSVT Trigger: AGTGACTGAACTGTCAACATCACAAAGAATCCACAAAGTACATCTCCTGAAAAGTGCTCTCATGAAATAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR TCA 90 bp | ATTTACCACTTTTGGATGTTCACATTTGCCTTGCAAATCCTAAGGGAAGAAAAACAGTGTAGAAGGACTTaGTCATGTTTTTGTGAAATC | + |
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Preference number: 4 (lower is better) Translates to: IYHFWMFTFALQILREEKQCRRT*SCFCEI Trigger: GATTTCACAAAAACATGATCAAGTCCTTCTACACTG...TTTTTCTTCCCTTAGGATTTGCAAGGCAAATGTGAACATCCAAAAGTGGTAAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| 3UTR CAA 72 bp | TTTTCAGGAGATGTACTTTGTGGATTCTTTGTGATGTaGACAGTTCAGTCACTATGTACATCTGTTCTATCA | + |
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Preference number: 4 (lower is better) Translates to: FSGDVLCGFFVM*TVQSLCTSVLS Trigger: TGATAGAACAGATGTACATAGTGACTGAACTGTCAACATCACAAAGAATCCACAAAGTACATCTCCTGAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CAA 90 bp | CCCCCTGGGAAGCTGTGTACAGGTCAGGATCAACAGCTGGAGCAGCTGGGACAGGAGTGGGCAGAGAGGTaGCGCCAACATCTTCATTTT | + |
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Preference number: 5 (lower is better) Translates to: PPGKLCTGQDQQLEQLGQEWAER*RQHLHF Trigger: AAAATGAAGATGTTGGCGCAACCTCTCTGCCCACTC...CTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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| CDS-3UTR CAA 90 bp | CTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGGAAGAGTGGGCAGAGAGGTaGCGCCAACATCTTCATTTT | + |
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Preference number: 5 (lower is better) Translates to: LPRGTEAFCSPLLLKAEEEWAER*RQHLHF Trigger: AAAATGAAGATGTTGGCGCAACCTCTCTGCCCACTC...TTCCTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CAA 90 bp | CTTCCTCGGGGAACTGAGGCCTTCTGTAGTCCCCTGCTCCTGAAGGCTGAGGAAATGTTGCCTTCCACCTaGCATACTTTCTATGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: LPRGTEAFCSPLLLKAEEMLPST*HTFYVS Trigger: TGAAACATAGAAAGTATGCAAGGTGGAAGGCAACAT...TTCCTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAGTTCCCCGAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CAA 90 bp | GAAGGAGAGCAATACACTGTAATTGCCAGTGGGCAGGAGGAGTCCCAGGAAACCAGTTATGAATATATGTaGCCTTCCACCTTGCATACT | + |
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Preference number: 5 (lower is better) Translates to: EGEQYTVIASGQEESQETSYEYM*PSTLHT Trigger: AGTATGCAAGGTGGAAGGCAACATATATTCATAACT...GGTTTCCTGGGACTCCTCCTGCCCACTGGCAATTACAGTGTATTGCTCTCCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS-3UTR CAA 90 bp | CAGGAAACCAGTGTGATTTTCCAGTACAATGATTCTATCACTCCACATGGTGTTCCAGCTCGATCTTCATaGTCTGCATACAAGAACATT | + |
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Preference number: 5 (lower is better) Translates to: QETSVIFQYNDSITPHGVPARSS*SAYKNI Trigger: AATGTTCTTGTATGCAGACAATGAAGATCGAGCTGG...AACACCATGTGGAGTGATAGAATCATTGTACTGGAAAATCACACTGGTTTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154132.8 |
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| CDS CAA 90 bp | ATGCTGAAGATGATGATGGCTGAGGTGGCTGAGTGGGCAGAGAGGTaGCGCCAACATCTTCATTTTCTTCAACATTTCATCTGTGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: MLKMMMAEVAEWAER*RQHLHFLQHFICEF Trigger: GAACTCACAGATGAAATGTTGAAGAAAATGAAGATGTTGGCGCAACCTCTCTGCCCACTCAGCCACCTCAGCCATCATCATCTTCAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133927.2 |
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