Pregenerated sensors for VSX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033080Ensembl transcript IDs: ENSMUST00000046095.10
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGATCTCTTGTCTCCGCCCCCTGAGTGCTGGGATTGCAGGTGCGTaGTACTGTATCTGGTTTGAGTGGTGCCGGGTATTGAATCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: LISCLRPLSAGIAGA*YCIWFEWCRVLNPG Trigger: GCCTGGATTCAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCCAGCACTCAGGGGGCGGAGACAAGAGATCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 90 bp | CTCCGCCCCCTGAGTGCTGGGATTGCAGGTGCGTGCTACTGTATCTaGTTTGAGTGGTGCCGGGTATTGAATCCAGGCCTTCTTGTGTAC | + |
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Preference number: 1 (lower is better) Translates to: LRPLSAGIAGACYCI*FEWCRVLNPGLLVY Trigger: GTACACAAGAAGGCCTGGATTCAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCCAGCACTCAGGGGGCGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | TCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCCACACAGTACATaGCACAGACCCTGTGCTAAGTTCTGCGGGCTGAAAGACAGCTTG | + |
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Preference number: 1 (lower is better) Translates to: SASELQKPGLLPHST*HRPCAKFCGLKDSL Trigger: CAAGCTGTCTTTCAGCCCGCAGAACTTAGCACAGGGTCTGTGTCATGTACTGTGTGGCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | CCCCCTGAGTGCTGGGATTGCAGGTGCGTGCTACTGTATCTGGTTTaGGTGGTGCCGGGTATTGAATCCAGGCCTTCTTGTGTACTATTA | + |
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Preference number: 1 (lower is better) Translates to: PPECWDCRCVLLYLV*VVPGIESRPSCVLL Trigger: TAATAGTACACAAGAAGGCCTGGATTCAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCCAGCACTCAGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | TGCCACACAGTACATGACACAGACCCTGTGCTAAGTTCTGCGGGCTaGAAGACAGCTTGCTCGGCATGTTTCCAGACTAAAACGGGGCAT | + |
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Preference number: 1 (lower is better) Translates to: CHTVHDTDPVLSSAG*KTACSACFQTKTGH Trigger: ATGCCCCGTTTTAGTCTGGAAACATGCCGAGCAAGCTGTCTTTCAGCCCGCAGAACTTAGCACAGGGTCTGTGTCATGTACTGTGTGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | TCTGCAGAGGAAGCTGCCCAAAACAGACAACCCTTCTTCAGCCTCTaGACTCCAAAAGCCAGGGCTACTGCCACACAGTACATGACACAG | + |
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Preference number: 1 (lower is better) Translates to: SAEEAAQNRQPFFSL*TPKARATATQYMTQ Trigger: CTGTGTCATGTACTGTGTGGCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGGCAGCTTCCTCTGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | GCACTTAAGAAGCAAAGGCCAAGCAGAGGCCAGCCTGGTACACAGTaGGTTCTAAGACAACCGGAGCTCTATAGTGAGGTCCTGTCTTGG | + |
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Preference number: 1 (lower is better) Translates to: ALKKQRPSRGQPGTQ*VLRQPELYSEVLSW Trigger: CCAAGACAGGACCTCACTATAGAGCTCCGGTTGTCTTAGAACTCACTGTGTACCAGGCTGGCCTCTGCTTGGCCTTTGCTTCTTAAGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR GCA 90 bp | AGAGAGACTGAGGCAGGAGATCATGAAAATGAAGCGAGCCTGGGCTaGACAGCAAGAACCCATTTCAACCAAAACCAAACCAAATATTCT | + |
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Preference number: 1 (lower is better) Translates to: RETEAGDHENEASLG*TARTHFNQNQTKYS Trigger: AGAATATTTGGTTTGGTTTTGGTTGAAATGGGTTCTTGCTGTGCAGCCCAGGCTCGCTTCATTTTCATGATCTCCTGCCTCAGTCTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 90 bp | GGCTTTCTTTGTTGTTTATACCTCGAATATTCAAGGCCCATCAAGTaGCTGAGAACACAAAATTATCACCTATCACAAAGACAGAGATGT | + |
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Preference number: 1 (lower is better) Translates to: GFLCCLYLEYSRPIK*LRTQNYHLSQRQRC Trigger: ACATCTCTGTCTTTGTGATAGGTGATAATTTTGTGTTCTCAGTCACTTGATGGGCCTTGAATATTCGAGGTATAAACAACAAAGAAAGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR GCA 90 bp | AAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCAGCACACCCTGTGCTAAGTTCTaGGGGCTGAAAGACAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: KANLELEVLWPSLPNTSTPCAKF*GLKDSL Trigger: CAAGCTGTCTTTCAGCCCGCAGAACTTAGCACAGGG...TGTGCTGGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR TCA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGAAACATGGCTCCAGGTaGCTTCAGAGAAGGAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: PKTDNPSSASELQKPGLLKHGSR*LQRRRG Trigger: GCCCCTCCTTCTCTGAAGTCACCTGGAGCCATGTTT...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR GCA 90 bp | CCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCGAAGCGAGCCTGGGCTaGACAGCAAGAACCCATTTC | + |
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Preference number: 2 (lower is better) Translates to: PKQTTLLQPLNSKSQGYCEASLG*TARTHF Trigger: GAAATGGGTTCTTGCTGTGCAGCCCAGGCTCGCTTC...GCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR GCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCGTTCCTGAGATAATCTaGAGAGGAAGCTGCCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: VAKANLELEVLWPSLPNTVPEII*RGSCPK Trigger: TTTTGGGCAGCTTCCTCTGCAGATTATCTCAGGAAC...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR CCA 90 bp | ATGGCTCCAGGTGACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTAGCGTGCTACTGTATCTaGTTTGAGTGGTGCCGGGTA | + |
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Preference number: 2 (lower is better) Translates to: MAPGDFREGGACGFLCCLACYCI*FEWCRV Trigger: TACCCGGCACCACTCAAACCAGATACAGTAGCACGC...TAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTCACCTGGAGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR TCA 90 bp | CGTGAAGACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCCCAAGAAGTTGGGTCTaGCCTTCAGACAGTCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: REDPAAHLLHMPHTIFVIPRSWV*PSDSLQ Trigger: CTGGAGACTGTCTGAAGGTCAGACCCAACTTCTTGG...GATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGTCTTCACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR GCA 90 bp | CGTGAAGACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCCCTGAGTGCTGGGATTaGAGGTGCGTGCTACTGTAT | + |
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Preference number: 2 (lower is better) Translates to: REDPAAHLLHMPHTIFVIPECWD*RCVLLY Trigger: ATACAGTAGCACGCACCTGCAATCCCAGCACTCAGG...GATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGTCTTCACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR CCA 90 bp | CCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCTTAGACCAAACTGACTaGCTTGAGAGGTGGTATGAA | + |
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Preference number: 2 (lower is better) Translates to: PKQTTLLQPLNSKSQGYCLDQTD*LERWYE Trigger: TTCATACCACCTCTCAAGCCAGTCAGTTTGGTCTAA...GCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR TCA 90 bp | ACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCTCTGTTTCTAAAGAGACTAGGGTaGAGGTGGGGACAGCCTAAC | + |
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Preference number: 2 (lower is better) Translates to: TQLHICYICPTPFLLSLFLKRLG*RWGQPN Trigger: GTTAGGCTGTCCCCACCTTCACCCTAGTCTCTTTAG...AAACAGAGATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR GCA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCAGATATTTAACAATTaGTTAAACATGGCTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: PKTDNPSSASELQKPGLLQIFNN*LNMAPG Trigger: ACCTGGAGCCATGTTTAAGCAATTGTTAAATATCTG...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR TCA 90 bp | GACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATTCTCTGGGATGCTCTTaGACATCTGATCTCTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: DFREGGACGFLCCLYLEYSLGCS*TSDLLS Trigger: AGACAAGAGATCAGATGTTCAAGAGCATCCCAGAGA...ATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR TCA 90 bp | ACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCTCTGTTTGAGAGAAAATCAAACTaGAGGTGTTTGTCCAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: TQLHICYICPTPFLLSLFERKSN*RCLSSF Trigger: AAAGCTGGACAAACACCTTCAGTTTGATTTTCTCTC...AAACAGAGATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR GCA 72 bp | TGTCTCCGCCCCCTGAGTGCTGGGATTGCAGGTGCGTaGTACTGTATCTGGTTTGAGTGGTGCCGGGTATTG | + |
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Preference number: 3 (lower is better) Translates to: CLRPLSAGIAGA*YCIWFEWCRVL Trigger: CAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCCAGCACTCAGGGGGCGGAGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 72 bp | CCTTCCCCTTCTTCTCAGAAGAGGGGACACCTCACATaGATATCAGCCAGGCTTGGCACGCTGAGCTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: PSPSSQKRGHLT*ISARLGTLSCS Trigger: ACTGCAGCTCAGCGTGCCAAGCCTGGCTGATATCCATGTGAGGTGTCCCCTCTTCTGAGAAGAAGGGGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 72 bp | GGATCACAGTGGCACAAAACTGTGGTCCAGCTACTGTaGAGGTTGGGGCAGAGGGATCGCTGGTTGGGTAAC | + |
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Preference number: 3 (lower is better) Translates to: GSQWHKTVVQLL*RLGQRDRWLGN Trigger: GTTACCCAACCAGCGATCCCTCTGCCCCAACCTCCACAGTAGCTGGACCACAGTTTTGTGCCACTGTGATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCGGTGTTTGTCCAGCTTaGGGGGACGCAATCTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: VAKANLELEVLWPSLPNTGVCPA*GDAICQ Trigger: CTGACAGATTGCGTCCCCCAAAGCTGGACAAACACC...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 72 bp | TGCTGGGATTGCAGGTGCGTGCTACTGTATCTGGTTTaGGTGGTGCCGGGTATTGAATCCAGGCCTTCTTGT | + |
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Preference number: 3 (lower is better) Translates to: CWDCRCVLLYLV*VVPGIESRPSC Trigger: ACAAGAAGGCCTGGATTCAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 72 bp | GAACTCCAAAAGCCAGGGCTACTGCCACACAGTACATaGCACAGACCCTGTGCTAAGTTCTGCGGGCTGAAA | + |
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Preference number: 3 (lower is better) Translates to: ELQKPGLLPHST*HRPCAKFCGLK Trigger: TTTCAGCCCGCAGAACTTAGCACAGGGTCTGTGTCATGTACTGTGTGGCAGTAGCCCTGGCTTTTGGAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 72 bp | GGGATTGCAGGTGCGTGCTACTGTATCTGGTTTGAGTaGTGCCGGGTATTGAATCCAGGCCTTCTTGTGTAC | + |
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Preference number: 3 (lower is better) Translates to: GIAGACYCIWFE*CRVLNPGLLVY Trigger: GTACACAAGAAGGCCTGGATTCAATACCCGGCACCACTCAAACCAGATACAGTAGCACGCACCTGCAATCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR GCA 72 bp | CTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTaGCACACAGTACATGACACAGACCCTGTGCTAAGT | + |
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Preference number: 3 (lower is better) Translates to: LLQPLNSKSQGY*HTVHDTDPVLS Trigger: ACTTAGCACAGGGTCTGTGTCATGTACTGTGTGGCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 72 bp | GTACATGACACAGACCCTGTGCTAAGTTCTGCGGGCTaGAAGACAGCTTGCTCGGCATGTTTCCAGACTAAA | + |
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Preference number: 3 (lower is better) Translates to: VHDTDPVLSSAG*KTACSACFQTK Trigger: TTTAGTCTGGAAACATGCCGAGCAAGCTGTCTTTCAGCCCGCAGAACTTAGCACAGGGTCTGTGTCATGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 72 bp | AGACTGAGGCAGGAGATCATGAAAATGAAGCGAGCCTaGGCTGCACAGCAAGAACCCATTTCAACCAAAACC | + |
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Preference number: 3 (lower is better) Translates to: RLRQEIMKMKRA*AAQQEPISTKT Trigger: GGTTTTGGTTGAAATGGGTTCTTGCTGTGCAGCCCAGGCTCGCTTCATTTTCATGATCTCCTGCCTCAGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CCA 72 bp | TACATATTTAACACAGTTTTAGCTGCGGGATCACAGTaGCACAAAACTGTGGTCCAGCTACTGTGGAGGTTG | + |
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Preference number: 3 (lower is better) Translates to: YIFNTVLAAGSQ*HKTVVQLLWRL Trigger: CAACCTCCACAGTAGCTGGACCACAGTTTTGTGCCACTGTGATCCCGCAGCTAAAACTGTGTTAAATATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR-3UTR CAA 90 bp | GACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATACTTTCCCTACGTCATaGTTTATTCAGTGTTGTAGT | + |
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Preference number: 3 (lower is better) Translates to: DFREGGACGFLCCLYLEYTFPTS*FIQCCS Trigger: ACTACAACACTGAATAAACAATGACGTAGGGAAAGT...ATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 72 bp | TGTTGTTTATACCTCGAATATTCAAGGCCCATCAAGTaGCTGAGAACACAAAATTATCACCTATCACAAAGA | + |
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Preference number: 3 (lower is better) Translates to: CCLYLEYSRPIK*LRTQNYHLSQR Trigger: TCTTTGTGATAGGTGATAATTTTGTGTTCTCAGTCACTTGATGGGCCTTGAATATTCGAGGTATAAACAACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR TCA 72 bp | TCAAACATAAATTCAAAAAGACCAAGAAGTTGGGTCTaGCCTTCAGACAGTCTCCAGATATTTAACAATTGC | + |
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Preference number: 3 (lower is better) Translates to: SNINSKRPRSWV*PSDSLQIFNNC Trigger: GCAATTGTTAAATATCTGGAGACTGTCTGAAGGTCAGACCCAACTTCTTGGTCTTTTTGAATTTATGTTTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCTCTCGCTGCGCTGCTaGCTGCCGAGCGCAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: PKTDNPSSASELQKPGLLLSLRC*LPSAGG Trigger: GCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAG...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGACGCTCTCGCTGCGCTaGTGGCTGCCGAGCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: PKTDNPSSASELQKPGLLTLSLR*WLPSAG Trigger: GCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGT...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | CCAGGTGACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGGAGCCGCAGAGTCCTaGCCCCGGTCCCGGTCCCGA | + |
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Preference number: 4 (lower is better) Translates to: PGDFREGGACGFLCCLYLGAAES*PRSRSR Trigger: TCGGGACCGGGACCGGGGCCAGGACTCTGCGGCTCC...GAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTCACCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCCAGCCATCACACTGCTaGCACCCCAGCGCTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTQPSHC*HPSASL Trigger: GAGAGAAGCGCTGGGGTGGCAGCAGTGTGATGGCTG...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCACTCAGCCATCACACTaGTGCCACCCCAGCGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTTQPSH*CHPSAS Trigger: AGAAGCGCTGGGGTGGCAGCAGTGTGATGGCTGAGT...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATGGGTGGACCGGGCCCTaGGCGACAGCAGGCTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: DFREGGACGFLCCLYLEYGWTGP*ATAGSG Trigger: ACCCGAGCCTGCTGTCGCCCAGGGCCCGGTCCACCC...ATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CAA 72 bp | CAGTGGCACAAAACTGTGGTCCAGCTACTGTGGAGGTaGGGGCAGAGGGATCGCTGGTTGGGTAACATAGCA | + |
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Preference number: 4 (lower is better) Translates to: QWHKTVVQLLWR*GQRDRWLGNIA Trigger: TGCTATGTTACCCAACCAGCGATCCCTCTGCCCCAACCTCCACAGTAGCTGGACCACAGTTTTGTGCCACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | CCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGCGCCCTGCAGGCTATCTaGAGAGTTGAGCACGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PKQTTLLQPLNSKSQGYCALQAI*RVEHAV Trigger: GACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGC...GCAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | CGTGAAGACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCGGTGGGAGGACAGCCTaGCGCCAGGGCTCTACTCCT | + |
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Preference number: 4 (lower is better) Translates to: REDPAAHLLHMPHTIFVIGGRTA*RQGSTP Trigger: AGGAGTAGAGCCCTGGCGCCAGGCTGTCCTCCCACC...GATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGTCTTCACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCCCTGTGGACTTTTTATaGATCCCCAGAAGCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTPVDFL*IPRSQG Trigger: ACCCTGGCTTCTGGGGATGCATAAAAAGTCCACAGG...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCAGCTGGACAGGTCAATaGCCACATCCTCCAAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTSWTGQ*PHPPSY Trigger: ATAGCTTGGAGGATGTGGCCATTGACCTGTCCAGCT...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | CGTGAAGACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCCGGAGTTGGCAGGTCTaGCTCCAATCCCAGCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: REDPAAHLLHMPHTIFVIRSWQV*LQSQQV Trigger: GACCTGCTGGGATTGGAGGCAGACCTGCCAACTCCG...GATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGTCTTCACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | GGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATTCAAGGCCCATCAAGTCCCCAGAAGCCAGGGTaGACAGGAGCCCTGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GLVAFFVVYTSNIQGPSSPQKPG*TGALQA Trigger: AGCCTGCAGGGCTCCTGTGCACCCTGGCTTCTGGGG...ACTTGATGGGCCTTGAATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCATTTTCTTAGTCTCCTaGCTGGAAGAGCTGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTIFLVS*LEELDR Trigger: CCTGTCCAGCTCTTCCAGGCAGGAGACTAAGAAAAT...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCATTCTTTTCTTCAGATaGACTGTCCCCATCCGACGT | + |
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Preference number: 4 (lower is better) Translates to: VAKANLELEVLWPSLPNTILFFR*TVPIRR Trigger: ACGTCGGATGGGGACAGTCCATCTGAAGAAAAGAAT...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR TCA 90 bp | CCAGGTGACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCATCCCAGCAGGTCATTaGTGGCAAAGCTTCGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: PGDFREGGACGFLCCLYLIPAGH*WQSFEG Trigger: GCCTTCGAAGCTTTGCCATCAATGACCTGCTGGGAT...GAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTCACCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATTCAAGGCCCATCAAGTCACGCTGTCCGGCAGTaGAATGCAGTGGCGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: GLVAFFVVYTSNIQGPSSHAVRQ*NAVAHH Trigger: ATGGTGCGCCACTGCATTCCACTGCCGGACAGCGTG...ACTTGATGGGCCTTGAATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | CCAGGTGACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGTGAAAACCGTCCTGTaGCTCCGCTTCTTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: PGDFREGGACGFLCCLYLVKTVL*LRFFLL Trigger: CAAAAGGAAGAAGCGGAGGCACAGGACGGTTTTCAC...GAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTCACCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR GCA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGAAACTCCCAGAGTCCTaGCAACTTGTCTTCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: PKTDNPSSASELQKPGLLKLPES*QLVFTF Trigger: GAAAGTGAAGACAAGTTGGCAGGACTCTGGGAGTTT...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATTCAAGGCCCATCAAGTCTGAGTACTGGACCCTaGGGGCATTTTCTTAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: GLVAFFVVYTSNIQGPSSLSTGP*GHFLSL Trigger: GAGACTAAGAAAATGCCCCCAGGGTCCAGTACTCAG...ACTTGATGGGCCTTGAATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CCA 90 bp | GACTTCAGAGAAGGAGGGGCTTGTGGCTTTCTTTGTTGTTTATACCTCGAATATCTTGTCTTCACTTTCTaGTTTTCTCATCCCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: DFREGGACGFLCCLYLEYLVFTF*FSHPCG Trigger: TCCACAGGGATGAGAAAACCAGAAAGTGAAGACAAG...ATATTCGAGGTATAAACAACAAAGAAAGCCACAAGCCCCTCCTTCTCTGAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CAA 72 bp | CCCACTCTAGAACTAAAGGGAACTTTCCCTACGTCATaGTTTATTCAGTGTTGTAGTGTTGCTTTTTATCCA | + |
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Preference number: 4 (lower is better) Translates to: PTLELKGTFPTS*FIQCCSVAFYP Trigger: TGGATAAAAAGCAACACTACAACACTGAATAAACAATGACGTAGGGAAAGTTCCCTTTAGTTCTAGAGTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| 3UTR CAA 72 bp | CTGTTTTCCTTAGAATGTTTCAGAGACTTTTGCCCATaGTTCACATGTTTATTTCGAACCAGTTGTCGAATA | + |
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Preference number: 4 (lower is better) Translates to: LFSLECFRDFCP*FTCLFRTSCRI Trigger: TATTCGACAACTGGTTCGAAATAAACATGTGAACAATGGGCAAAAGTCTCTGAAACATTCTAAGGAAAACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 90 bp | GACTGTCCCCATCCGACGTGGAGACGCTCTCGCTGCGCTGCTGGCTaGCGAGCGCAGGCGGCGGGTGGACCGGGCCCTGGGCGACAGCAG | + |
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Preference number: 5 (lower is better) Translates to: DCPHPTWRRSRCAAG*RAQAAGGPGPGRQQ Trigger: CTGCTGTCGCCCAGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 90 bp | GCCCAGCGGGAGAGCCCCGCGAGCAGGGCAGGAGCCGCAGAGTCCTaGCCCCGGTCCCGGTCCCGACCCTATTGCCTCCGCTGGATCTCC | + |
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Preference number: 5 (lower is better) Translates to: AQRESPASRAGAAES*PRSRSRPYCLRWIS Trigger: GGAGATCCAGCGGAGGCAATAGGGTCGGGACCGGGACCGGGGCCAGGACTCTGCGGCTCCTGCCCTGCTCGCGGGGCTCTCCCGCTGGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 90 bp | TCAGATGGACTGTCCCCATCCGACGTGGAGACGCTCTCGCTGCGCTaGTGGCTGCCGAGCGCAGGCGGCGGGTGGACCGGGCCCTGGGCG | + |
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Preference number: 5 (lower is better) Translates to: SDGLSPSDVETLSLR*WLPSAGGGWTGPWA Trigger: CGCCCAGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATCTGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 90 bp | GATGGACTGTCCCCATCCGACGTGGAGACGCTCTCGCTGCGCTGCTaGCTGCCGAGCGCAGGCGGCGGGTGGACCGGGCCCTGGGCGACA | + |
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Preference number: 5 (lower is better) Translates to: DGLSPSDVETLSLRC*LPSAGGGWTGPWAT Trigger: TGTCGCCCAGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 90 bp | TTTCTTCAGATGGACTGTCCCCATCCGACGTGGAGACGCTCTCGCTaGGCTGCTGGCTGCCGAGCGCAGGCGGCGGGTGGACCGGGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: FLQMDCPHPTWRRSR*AAGCRAQAAGGPGP Trigger: AGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATCTGAAGAAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS TCA 90 bp | GCTCCGCCGGAGTTGGCAGGTCTGCCTCCAATCCCAGCAGGTCATTaGTGGCAAAGCTTCGAAGGCGAGAGCCGGTGGGAGGACAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: APPELAGLPPIPAGH*WQSFEGESRWEDSL Trigger: CAGGCTGTCCTCCCACCGGCTCTCGCCTTCGAAGCTTTGCCATCAATGACCTGCTGGGATTGGAGGCAGACCTGCCAACTCCGGCGGAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 90 bp | ATTGATGGCAAAGCTTCGAAGGCGAGAGCCGGTGGGAGGACAGCCTaGCGCCAGGGCTCTACTCCTGGAGCGCGCATCCGAAAGCCCATC | + |
|
Preference number: 5 (lower is better) Translates to: IDGKASKARAGGRTA*RQGSTPGARIRKPI Trigger: GATGGGCTTTCGGATGCGCGCTCCAGGAGTAGAGCCCTGGCGCCAGGCTGTCCTCCCACCGGCTCTCGCCTTCGAAGCTTTGCCATCAAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 90 bp | ATGCATCCCCAGAAGCCAGGGTGCACAGGAGCCCTGCAGGCTATCTaGAGAGTTGAGCACGCTGTCCGGCAGTGGAATGCAGTGGCGCAC | + |
|
Preference number: 5 (lower is better) Translates to: MHPQKPGCTGALQAI*RVEHAVRQWNAVAH Trigger: GTGCGCCACTGCATTCCACTGCCGGACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCTGGCTTCTGGGGATGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 90 bp | GTGGACTTTTTATGCATCCCCAGAAGCCAGGGTGCACAGGAGCCCTaGAGGCTATCTGCAGAGTTGAGCACGCTGTCCGGCAGTGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: VDFLCIPRSQGAQEP*RLSAELSTLSGSGM Trigger: CATTCCACTGCCGGACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCTGGCTTCTGGGGATGCATAAAAAGTCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 90 bp | TTTGCCCAGGATAAGGGACATCTTCGGGTCATTCTTTTCTTCAGATaGACTGTCCCCATCCGACGTGGAGACGCTCTCGCTGCGCTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FAQDKGHLRVILFFR*TVPIRRGDALAALL Trigger: CAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATCTGAAGAAAAGAATGACCCGAAGATGTCCCTTATCCTGGGCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CAA 90 bp | GTAGCAAAGGCTAACCTGGAACTTGAGGTCCTCTGGCCCAGCCTCCCAAATACCCTCCGCTTCTTCCTTTaGCCCAGGATAAGGGACATC | + |
|
Preference number: 5 (lower is better) Translates to: VAKANLELEVLWPSLPNTLRFFL*PRIRDI Trigger: GATGTCCCTTATCCTGGGCAAAAGGAAGAAGCGGAG...GGTATTTGGGAGGCTGGGCCAGAGGACCTCAAGTTCCAGGTTAGCCTTTGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CAA 90 bp | CCCAAAACAGACAACCCTTCTTCAGCCTCTGAACTCCAAAAGCCAGGGCTACTGAATCCCAGCAGGTCATaGATGGCAAAGCTTCGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: PKTDNPSSASELQKPGLLNPSRS*MAKLRR Trigger: CCTTCGAAGCTTTGCCATCAATGACCTGCTGGGATT...CAGTAGCCCTGGCTTTTGGAGTTCAGAGGCTGAAGAAGGGTTGTCTGTTTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 90 bp | CCCCTCTCAGGTCCATCCTCATCCTTATTAGCACCCTTTTTGAGATaGTCAAACTCCCAGAGTCCTGCCAACTTGTCTTCACTTTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: PLSGPSSSLLAPFLR*SNSQSPANLSSLSG Trigger: ACCAGAAAGTGAAGACAAGTTGGCAGGACTCTGGGAGTTTGACCATCTCAAAAAGGGTGCTAATAAGGATGAGGATGGACCTGAGAGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS-3UTR CAA 90 bp | CGTGAAGACCCAGCTGCACATCTGTTACATATGCCCCACACCATTTTTGTTATCCAGAGTCCTGCCAACTaGTCTTCACTTTCTGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: REDPAAHLLHMPHTIFVIQSPAN*SSLSGF Trigger: AAAACCAGAAAGTGAAGACAAGTTGGCAGGACTCTG...GATAACAAAAATGGTGTGGGGCATATGTAACAGATGTGCAGCTGGGTCTTCACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | TCGCTGCGCTGCTGGCTGCCGAGCGCAGGCGGCGGGTaGACCGGGCCCTGGGCGACAGCAGGCTCGGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: SLRCWLPSAGGG*TGPWATAGSGP Trigger: AGGACCCGAGCCTGCTGTCGCCCAGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | TCCCCATCCGACGTGGAGACGCTCTCGCTGCGCTGCTaGCTGCCGAGCGCAGGCGGCGGGTGGACCGGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SPSDVETLSLRC*LPSAGGGWTGP Trigger: GGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | GAGAGCCCCGCGAGCAGGGCAGGAGCCGCAGAGTCCTaGCCCCGGTCCCGGTCCCGACCCTATTGCCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: ESPASRAGAAES*PRSRSRPYCLR Trigger: GCGGAGGCAATAGGGTCGGGACCGGGACCGGGGCCAGGACTCTGCGGCTCCTGCCCTGCTCGCGGGGCTCTC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | CGGGCCCTGGGCGACAGCAGGCTCGGGTCCTGCAGATaGCAGAAGCCGCAGGTCGGCGAGGAGCAGGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: RALGDSRLGSCR*QKPQVGEEQAA Trigger: CGCTGCCTGCTCCTCGCCGACCTGCGGCTTCTGCCATCTGCAGGACCCGAGCCTGCTGTCGCCCAGGGCCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 72 bp | ATGGACTGTCCCCATCCGACGTGGAGACGCTCTCGCTaGGCTGCTGGCTGCCGAGCGCAGGCGGCGGGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: MDCPHPTWRRSR*AAGCRAQAAGG Trigger: TCCACCCGCCGCCTGCGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 90 bp | GGCAGGAGCCGCAGAGTCCTGGCCCCGGTCCCGGTCCCGACCCTATaGCCTCCGCTGGATCTCCGCTGTTGGATCTTAGCCCAGGCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: GRSRRVLAPVPVPTL*PPLDLRCWILAQAP Trigger: CGGAGCCTGGGCTAAGATCCAACAGCGGAGATCCAGCGGAGGCAATAGGGTCGGGACCGGGACCGGGGCCAGGACTCTGCGGCTCCTGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | CGGTGGGAGGACAGCCTGGCGCCAGGGCTCTACTCCTaGAGCGCGCATCCGAAAGCCCATCCCGTCCAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: RWEDSLAPGLYS*SAHPKAHPVQS Trigger: TGACTGGACGGGATGGGCTTTCGGATGCGCGCTCCAGGAGTAGAGCCCTGGCGCCAGGCTGTCCTCCCACCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | AAAGCTTCGAAGGCGAGAGCCGGTGGGAGGACAGCCTaGCGCCAGGGCTCTACTCCTGGAGCGCGCATCCGA | + |
|
Preference number: 6 (lower is better) Translates to: KASKARAGGRTA*RQGSTPGARIR Trigger: TCGGATGCGCGCTCCAGGAGTAGAGCCCTGGCGCCAGGCTGTCCTCCCACCGGCTCTCGCCTTCGAAGCTTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 72 bp | CGCAGAGTCCTGGCCCCGGTCCCGGTCCCGACCCTATaGCCTCCGCTGGATCTCCGCTGTTGGATCTTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: RRVLAPVPVPTL*PPLDLRCWILA Trigger: GGCTAAGATCCAACAGCGGAGATCCAGCGGAGGCAATAGGGTCGGGACCGGGACCGGGGCCAGGACTCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 72 bp | GGTCCCGACCCTATTGCCTCCGCTGGATCTCCGCTGTaGGATCTTAGCCCAGGCTCCGCCGGAGTTGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: GPDPIASAGSPL*DLSPGSAGVGR Trigger: CCTGCCAACTCCGGCGGAGCCTGGGCTAAGATCCAACAGCGGAGATCCAGCGGAGGCAATAGGGTCGGGACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | GTCCCGACCCTATTGCCTCCGCTGGATCTCCGCTGTTaGATCTTAGCCCAGGCTCCGCCGGAGTTGGCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: VPTLLPPLDLRC*ILAQAPPELAG Trigger: ACCTGCCAACTCCGGCGGAGCCTGGGCTAAGATCCAACAGCGGAGATCCAGCGGAGGCAATAGGGTCGGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 72 bp | CAGGGTGCACAGGAGCCCTGCAGGCTATCTGCAGAGTaGAGCACGCTGTCCGGCAGTGGAATGCAGTGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: QGAQEPCRLSAE*STLSGSGMQWR Trigger: GCGCCACTGCATTCCACTGCCGGACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 90 bp | GGCTCCGCCGGAGTTGGCAGGTCTGCCTCCAATCCCAGCAGGTCATaGATGGCAAAGCTTCGAAGGCGAGAGCCGGTGGGAGGACAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: GSAGVGRSASNPSRS*MAKLRRREPVGGQP Trigger: AGGCTGTCCTCCCACCGGCTCTCGCCTTCGAAGCTTTGCCATCAATGACCTGCTGGGATTGGAGGCAGACCTGCCAACTCCGGCGGAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS TCA 72 bp | AGGGTGCACAGGAGCCCTGCAGGCTATCTGCAGAGTTaGGCACGCTGTCCGGCAGTGGAATGCAGTGGCGCA | + |
|
Preference number: 6 (lower is better) Translates to: RVHRSPAGYLQS*ARCPAVECSGA Trigger: TGCGCCACTGCATTCCACTGCCGGACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 72 bp | CAGAAGCCAGGGTGCACAGGAGCCCTGCAGGCTATCTaGAGAGTTGAGCACGCTGTCCGGCAGTGGAATGCA | + |
|
Preference number: 6 (lower is better) Translates to: QKPGCTGALQAI*RVEHAVRQWNA Trigger: TGCATTCCACTGCCGGACAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCTGGCTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | CATTCTTTTCTTCAGATGGACTGTCCCCATCCGACGTaGAGACGCTCTCGCTGCGCTGCTGGCTGCCGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: HSFLQMDCPHPT*RRSRCAAGCRA Trigger: CGCTCGGCAGCCAGCAGCGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATCTGAAGAAAAGAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 72 bp | GGAGTTGGCAGGTCTGCCTCCAATCCCAGCAGGTCATaGATGGCAAAGCTTCGAAGGCGAGAGCCGGTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: GVGRSASNPSRS*MAKLRRREPVG Trigger: TCCCACCGGCTCTCGCCTTCGAAGCTTTGCCATCAATGACCTGCTGGGATTGGAGGCAGACCTGCCAACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | TCAATGGCCACATCCTCCAAGCTATTCTCAGGGTTCTaGGTTGTTTCGTCTGGCCCCCTCTCAGGTCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: SMATSSKLFSGF*VVSSGPLSGPS Trigger: GGATGGACCTGAGAGGGGGCCAGACGAAACAACCCAGAACCCTGAGAATAGCTTGGAGGATGTGGCCATTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS TCA 72 bp | CAAAGGCCTTCTCCAGTTCTTCGAGTTGATGGGCAGTaGAAACCGTCCTGTGCCTCCGCTTCTTCCTTTTGC | + |
|
Preference number: 6 (lower is better) Translates to: QRPSPVLRVDGQ*KPSCASASSFC Trigger: GCAAAAGGAAGAAGCGGAGGCACAGGACGGTTTTCACTGCCCATCAACTCGAAGAACTGGAGAAGGCCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CAA 72 bp | GCAGTGAAAACCGTCCTGTGCCTCCGCTTCTTCCTTTaGCCCAGGATAAGGGACATCTTCGGGTCATTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: AVKTVLCLRFFL*PRIRDIFGSFF Trigger: AAAGAATGACCCGAAGATGTCCCTTATCCTGGGCAAAAGGAAGAAGCGGAGGCACAGGACGGTTTTCACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS GCA 72 bp | AGCACCCTTTTTGAGATGGTCAAACTCCCAGAGTCCTaGCAACTTGTCTTCACTTTCTGGTTTTCTCATCCC | + |
|
Preference number: 6 (lower is better) Translates to: STLFEMVKLPES*QLVFTFWFSHP Trigger: GGGATGAGAAAACCAGAAAGTGAAGACAAGTTGGCAGGACTCTGGGAGTTTGACCATCTCAAAAAGGGTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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| CDS CCA 72 bp | GGTCCATCCTCATCCTTATTAGCACCCTTTTTGAGATaGTCAAACTCCCAGAGTCCTGCCAACTTGTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: GPSSSLLAPFLR*SNSQSPANLSS Trigger: TGAAGACAAGTTGGCAGGACTCTGGGAGTTTGACCATCTCAAAAAGGGTGCTAATAAGGATGAGGATGGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046095.10 |
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