RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VSTM2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037843

Ensembl transcript IDs: ENSMUST00000109523.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CCTGGGCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGGAGGAACAGGAGCGTTaGGCCCCGGCCCGGCTCCTC +
Preference number: 2 (lower is better)
Translates to: PGPPTSPPSPRVARGLSQEEQER*APARLL
Trigger: GAGGAGCCGGGCCGGGGCCCAACGCTCCTGTTCCTC...CTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGCCCAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
3UTR-3UTR CCA 90 bp AATAGGGATGGGATGGGCGGAGGGGGTCCCTTGGGTGGACTTCACAGGCCCGAGGGTGCTAACTCTGCCTaGCGGGGCAGCCTCCCGCGT +
Preference number: 2 (lower is better)
Translates to: NRDGMGGGGPLGGLHRPEGANSA*RGSLPR
Trigger: ACGCGGGAGGCTGCCCCGCCAGGCAGAGTTAGCACC...CTCGGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCCCATCCCATCCCTATT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
3UTR-3UTR CCA 90 bp GCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGTTCCGGGAATAGGGATGGGATaGGCGGAGGGGGTCCCTTGG +
Preference number: 2 (lower is better)
Translates to: ASHLPSITEGGQRFEPVPGIGMG*AEGVPW
Trigger: CCAAGGGACCCCCTCCGCCCATCCCATCCCTATTCC...CGGAACTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
3UTR-3UTR CAA 90 bp CCTGGGCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGGGCGGAGGGGGTCCCTaGGGTGGACTTCACAGGCCC +
Preference number: 3 (lower is better)
Translates to: PGPPTSPPSPRVARGLSQGGGGP*GGLHRP
Trigger: GGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCC...CTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGCCCAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
3UTR CCA 72 bp TCAGGAATAGGGATGGGATGGGCGGAGGGGGTCCCTTaGGTGGACTTCACAGGCCCGAGAAGGGGCTGGGCG +
Preference number: 3 (lower is better)
Translates to: SGIGMGWAEGVP*VDFTGPRRGWA
Trigger: CGCCCAGCCCCTTCTCGGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCCCATCCCATCCCTATTCCTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp GCAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGGGGCCTTGCCGTCGCTaGAGTCGATCACGCGGCACT +
Preference number: 4 (lower is better)
Translates to: ASKAHAGLLCRRRRRAGRGPCRR*SRSRGT
Trigger: AGTGCCGCGTGATCGACTTCAGCGACGGCAAGGCCC...CCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp GGAGCCGGGAGGGGGATAAGCAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGGGCCTGCGGGTCGCGTaGCGCCGCCGAGTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: GAGRGISKQSTRGTPLPPGLRVA*RRRVAG
Trigger: TCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCC...CGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTGCTTATCCCCCTCCCGGCTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp AGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATGGCGTGTCCGGAGACGTaGTTGTCCCAGGGCGCATGG +
Preference number: 4 (lower is better)
Translates to: STRGTPLPPSPQGREDCMACPET*LSQGAW
Trigger: CCATGCGCCCTGGGACAACCACGTCTCCGGACACGC...CATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp CAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGAAGGTGCCTTCGTCCGTaGGCTTCACCCGGGACAGCC +
Preference number: 4 (lower is better)
Translates to: QAKHTRDSSAAVAAGPGGRCLRP*ASPGTA
Trigger: GGCTGTCCCGGGTGAAGCCCACGGACGAAGGCACCT...TCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp AGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATGCATGGGGTGTCTCTGTaGAGAGTGCGTGTCCGGAGA +
Preference number: 4 (lower is better)
Translates to: STRGTPLPPSPQGREDCMHGVSL*RVRVRR
Trigger: TCTCCGGACACGCACTCTTCACAGAGACACCCCATG...CATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp AGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATGTATGCTTTGACCTTGTaGTGCCGGGCCTTGCCGTCG +
Preference number: 4 (lower is better)
Translates to: STRGTPLPPSPQGREDCMYALTL*CRALPS
Trigger: CGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATA...CATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp GCAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGGACAGCCGAAGCTTGTaGGAGATGTTGCTGCCCACC +
Preference number: 4 (lower is better)
Translates to: ASKAHAGLLCRRRRRAGRDSRSL*EMLLPT
Trigger: GGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTC...CCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp CCTGGGCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGCCTGCTGGGAAGCTTTaGGCTGGTTGGAGGCCCACG +
Preference number: 4 (lower is better)
Translates to: PGPPTSPPSPRVARGLSQPAGKL*AGWRPT
Trigger: CGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGG...CTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGCCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp GGAGCCGGGAGGGGGATAAGCAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGCGCGGCACTCGTAGGTaGCTTCGTCCGTGGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GAGRGISKQSTRGTPLPPRGTRR*LRPWAS
Trigger: TGAAGCCCACGGACGAAGGCACCTACGAGTGCCGCG...CGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTGCTTATCCCCCTCCCGGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp AAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATCCCGAGTCCTCCTGCTaGGAAGCTTTGAGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: KHTRDSSAAVAAGPGGLHPESSC*EALSWL
Trigger: CAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGG...ATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp CAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGATGTCTCTGTGAAGAGTaGGTGTCCGGAGACGTGGTT +
Preference number: 4 (lower is better)
Translates to: QAKHTRDSSAAVAAGPGGCLCEE*VSGDVV
Trigger: AACCACGTCTCCGGACACGCACTCTTCACAGAGACA...TCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp CACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGAGGGGGTTCAGTCCAGTCCCGGTaGCTGCGCAGGTACCACCAC +
Preference number: 4 (lower is better)
Translates to: HQGGCPLIRNRDGMGGGGSVQSR*LRRYHH
Trigger: GTGGTGGTACCTGCGCAGCCACCGGGACTGGACTGA...ACCCCCTCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp CACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGAGGGGGTTCCAGTCCCGGTGGCTaGGCAGGTACCACCACTGAA +
Preference number: 4 (lower is better)
Translates to: HQGGCPLIRNRDGMGGGGSSPGG*AGTTTE
Trigger: TTCAGTGGTGGTACCTGCGCAGCCACCGGGACTGGA...ACCCCCTCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp AATAGGGATGGGATGGGCGGAGGGGGTCCCTTGGGTGGACTTCACAGGCCCGAGATCCTCGCCTGTCCGTaGCGTCATGTCATGGGGTGT +
Preference number: 4 (lower is better)
Translates to: NRDGMGGGGPLGGLHRPEILACP*RHVMGC
Trigger: ACACCCCATGACATGACGGCACGGACAGGCGAGGAT...CTCGGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCCCATCCCATCCCTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp AATAGGGATGGGATGGGCGGAGGGGGTCCCTTGGGTGGACTTCACAGGCCCGAGATGATGGGGAACCACTaGCTCGGAAGGAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: NRDGMGGGGPLGGLHRPEMMGNH*LGRSRP
Trigger: TGGCCTGCTCCTTCCGAGGCAGTGGTTCCCCATCAT...CTCGGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCCCATCCCATCCCTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp AATAGGGATGGGATGGGCGGAGGGGGTCCCTTGGGTGGACTTCACAGGCCCGAGTTCCCCGAGTCCTCCTaGTGGGAAGCTTTGAGCTGG +
Preference number: 4 (lower is better)
Translates to: NRDGMGGGGPLGGLHRPEFPESS*WEALSW
Trigger: CCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAA...CTCGGGCCTGTGAAGTCCACCCAAGGGACCCCCTCCGCCCATCCCATCCCTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp GGGAGGGGGATAAGCAAGCAAAGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCCACACTTATTTTGGTaGCGTCCTTCCCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: GRGISKQSTRGTPLPPSPPHLFW*RPSPSP
Trigger: AGGACTCGGGGAAGGACGCCACCAAAATAAGTGTGG...CGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCTTTGCTTGCTTATCCCCCTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp CACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGAGGGGGTCTGCACCCGCAGGTATaGTTTGACCTTGTGATGCCG +
Preference number: 4 (lower is better)
Translates to: HQGGCPLIRNRDGMGGGGLHPQV*FDLVMP
Trigger: CGGCATCACAAGGTCAAAGCATACCTGCGGGTGCAG...ACCCCCTCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp GCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGTTCCGCGCAGGTACCACCACTaGATCTCCAGTGAGTATGAT +
Preference number: 4 (lower is better)
Translates to: ASHLPSITEGGQRFEPVPRRYHH*ISSEYD
Trigger: ATCATACTCACTGGAGATTCAGTGGTGGTACCTGCG...CGGAACTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR TCA 90 bp CACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGAGGGGGTTGCTGCCCACCACCTTaGCCACACTTATTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: HQGGCPLIRNRDGMGGGGCCPPP*PHLFWW
Trigger: CCACCAAAATAAGTGTGGTCAAGGTGGTGGGCAGCA...ACCCCCTCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp GGTGGCCAGAGGTTTGAGCCAGTTCCGGGGCGGGGTGGGCCCAATAGAAATATTTTGGAGGCCCACGTCTaGTTGTCAGTCCAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: GGQRFEPVPGRGGPNRNILEAHV*LSVQSR
Trigger: CCGGGACTGGACTGACAAGCAGACGTGGGCCTCCAA...AATATTTCTATTGGGCCCACCCCGCCCCGGAACTGGCTCAAACCTCTGGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp ACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGAGAGTTCTCCCCGGGCTaGACCCGCAGGTATGCTTTG +
Preference number: 4 (lower is better)
Translates to: TNHQGGCPLIRNRDGMGGEFSPG*TRRYAL
Trigger: CAAAGCATACCTGCGGGTGCAGCCCGGGGAGAACTC...TCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTGGTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp ATATTTACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGTTGTCCCAGGGCGCATaGCCTGCGGGTCGCGTGGCG +
Preference number: 4 (lower is better)
Translates to: IFTNHQGGCPLIRNRDGMLSQGA*PAGRVA
Trigger: CGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAA...CATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTGGTTTGTAAATAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CCA 90 bp ACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGACGTGCCGTCATGTCATaGGGTGTCTCTGTGAAGAGT +
Preference number: 4 (lower is better)
Translates to: TNHQGGCPLIRNRDGMGGRAVMS*GVSVKS
Trigger: ACTCTTCACAGAGACACCCCATGACATGACGGCACG...TCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTGGTTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR GCA 90 bp AGGTTTGAGCCAGTTCCGGGGCGGGGTGGGCCCAATAGAAATATTTACAAACCAGAGTTGCAGGAAAAGTaGCAGGTAGTGGAGGGCGCC +
Preference number: 4 (lower is better)
Translates to: RFEPVPGRGGPNRNIYKPELQEK*QVVEGA
Trigger: GGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTC...TGGTTTGTAAATATTTCTATTGGGCCCACCCCGCCCCGGAACTGGCTCAAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 90 bp CGCATGGCCTGCGGGTCGCGTGGCGCCGCCGAGTTGCAGGAAAAGTaGCAGGTAGTGGAGGGCGCCCAGCGCCGCGGCCAGCGGGGCCCC +
Preference number: 5 (lower is better)
Translates to: RMACGSRGAAELQEK*QVVEGAQRRGQRGP
Trigger: GGGGCCCCGCTGGCCGCGGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 90 bp GTCCGGAGACGTGGTTGTCCCAGGGCGCATGGCCTGCGGGTCGCGTaGCGCCGCCGAGTTGCAGGAAAAGTGCCAGGTAGTGGAGGGCGC +
Preference number: 5 (lower is better)
Translates to: VRRRGCPRAHGLRVA*RRRVAGKVPGSGGR
Trigger: GCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp AGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATGCGGGACAGCCGAAGCTaGTGGGAGATGTTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: STRGTPLPPSPQGREDCMRDSRS*WEMLLP
Trigger: GGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCG...CATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 90 bp GAAGAGTGCGTGTCCGGAGACGTGGTTGTCCCAGGGCGCATGGCCTaGGGGTCGCGTGGCGCCGCCGAGTTGCAGGAAAAGTGCCAGGTA +
Preference number: 5 (lower is better)
Translates to: EECVSGDVVVPGRMA*GSRGAAELQEKCQV
Trigger: TACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACTCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 90 bp TCTGTGAAGAGTGCGTGTCCGGAGACGTGGTTGTCCCAGGGCGCATaGCCTGCGGGTCGCGTGGCGCCGCCGAGTTGCAGGAAAAGTGCC +
Preference number: 5 (lower is better)
Translates to: SVKSACPETWLSQGA*PAGRVAPPSCRKSA
Trigger: GGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACTCTTCACAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp GCCTCCCACCTCCCCTCCATCACCGAGGGTGGCCAGAGGTTTGAGCCAGTTCCGCGTGGCGCCGCCGAGTaGCAGGAAAAGTGCCAGGTA +
Preference number: 5 (lower is better)
Translates to: ASHLPSITEGGQRFEPVPRGAAE*QEKCQV
Trigger: TACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACG...CGGAACTGGCTCAAACCTCTGGCCACCCTCGGTGATGGAGGGGAGGTGGGAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp AGCACACGCGGGACTCCTCTGCCGCCGTCGCCGCAGGGCCGGGAGGACTGCATGTTGACCACACTTATTTaGGTGGCGTCCTTCCCCGAG +
Preference number: 5 (lower is better)
Translates to: STRGTPLPPSPQGREDCMLTTLI*VASFPE
Trigger: CTCGGGGAAGGACGCCACCAAAATAAGTGTGGTCAA...CATGCAGTCCTCCCGGCCCTGCGGCGACGGCGGCAGAGGAGTCCCGCGTGTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS TCA 90 bp ACCGAGTTCTCCCCGGGCTGCACCCGCAGGTATGCTTTGACCTTGTaGTGCCGGGCCTTGCCGTCGCTGAAGTCGATCACGCGGCACTCG +
Preference number: 5 (lower is better)
Translates to: TEFSPGCTRRYALTL*CRALPSLKSITRHS
Trigger: CGAGTGCCGCGTGATCGACTTCAGCGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATACCTGCGGGTGCAGCCCGGGGAGAACTCGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 90 bp AGGCAGCTGCAGCACCGAGTTCTCCCCGGGCTGCACCCGCAGGTATaGTTTGACCTTGTGATGCCGGGCCTTGCCGTCGCTGAAGTCGAT +
Preference number: 5 (lower is better)
Translates to: RQLQHRVLPGLHPQV*FDLVMPGLAVAEVD
Trigger: ATCGACTTCAGCGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATACCTGCGGGTGCAGCCCGGGGAGAACTCGGTGCTGCAGCTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 90 bp TTGGTGGCGTCCTTCCCCGAGTCCTCCTGCTGGGAAGCTTTGAGCTaGTTGGAGGCCCACGTCTGCTTGTCAGTCCAGTCCCGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: LVASFPESSCWEALS*LEAHVCLSVQSRWL
Trigger: CAGCCACCGGGACTGGACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 90 bp ACTGCCTCGGAAGGAGCAGGCCATCTCTACATCCTCGCCTGTCCGTaGCGTCATGTCATGGGGTGTCTCTGTGAAGAGTGCGTGTCCGGA +
Preference number: 5 (lower is better)
Translates to: TASEGAGHLYILACP*RHVMGCLCEECVSG
Trigger: TCCGGACACGCACTCTTCACAGAGACACCCCATGACATGACGGCACGGACAGGCGAGGATGTAGAGATGGCCTGCTCCTTCCGAGGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 90 bp GAGCAGGCCATCTCTACATCCTCGCCTGTCCGTGCCGTCATGTCATaGGGTGTCTCTGTGAAGAGTGCGTGTCCGGAGACGTGGTTGTCC +
Preference number: 5 (lower is better)
Translates to: EQAISTSSPVRAVMS*GVSVKSACPETWLS
Trigger: GGACAACCACGTCTCCGGACACGCACTCTTCACAGAGACACCCCATGACATGACGGCACGGACAGGCGAGGATGTAGAGATGGCCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS TCA 90 bp TTATTTTGGTGGCGTCCTTCCCCGAGTCCTCCTGCTGGGAAGCTTTaGGCTGGTTGGAGGCCCACGTCTGCTTGTCAGTCCAGTCCCGGT +
Preference number: 5 (lower is better)
Translates to: LFWWRPSPSPPAGKL*AGWRPTSACQSSPG
Trigger: ACCGGGACTGGACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 90 bp ACCTTGACCACACTTATTTTGGTGGCGTCCTTCCCCGAGTCCTCCTaGTGGGAAGCTTTGAGCTGGTTGGAGGCCCACGTCTGCTTGTCA +
Preference number: 5 (lower is better)
Translates to: TLTTLILVASFPESS*WEALSWLEAHVCLS
Trigger: TGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAAGTGTGGTCAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 90 bp TTGACCACACTTATTTTGGTGGCGTCCTTCCCCGAGTCCTCCTGCTaGGAAGCTTTGAGCTGGTTGGAGGCCCACGTCTGCTTGTCAGTC +
Preference number: 5 (lower is better)
Translates to: LTTLILVASFPESSC*EALSWLEAHVCLSV
Trigger: GACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAAGTGTGGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp GGGCCCAATAGAAATATTTACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATGTCCGGAGACGTGGTaGTCCCAGGGCGCATGGCCT +
Preference number: 5 (lower is better)
Translates to: GPNRNIYKPPGWVSPDQECPETW*SQGAWP
Trigger: AGGCCATGCGCCCTGGGACAACCACGTCTCCGGACA...TTCCTGATCAGGGGACACCCACCCTGGTGGTTTGTAAATATTTCTATTGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp GGGCCCAATAGAAATATTTACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAAGAGGCCCACGTCTGCTaGTCAGTCCAGTCCCGGTGG +
Preference number: 5 (lower is better)
Translates to: GPNRNIYKPPGWVSPDQEEAHVC*SVQSRW
Trigger: CCACCGGGACTGGACTGACAAGCAGACGTGGGCCTC...TTCCTGATCAGGGGACACCCACCCTGGTGGTTTGTAAATATTTCTATTGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp ACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATAGGGATGGGATGGGCGGATTGCTGCCCACCACCTaGACCACACTTATTTTGGTG +
Preference number: 5 (lower is better)
Translates to: TNHQGGCPLIRNRDGMGGLLPTT*TTLILV
Trigger: CACCAAAATAAGTGTGGTCAAGGTGGTGGGCAGCAA...TCCGCCCATCCCATCCCTATTCCTGATCAGGGGACACCCACCCTGGTGGTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCAGTTCCGGGGCGGGGTGGGCCCAATAGAAATATTTACAAACCAAGCTTGTGGGAGATGTaGCTGCCCACCACCTTGACC +
Preference number: 5 (lower is better)
Translates to: RFEPVPGRGGPNRNIYKPSLWEM*LPTTLT
Trigger: GGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCT...TGGTTTGTAAATATTTCTATTGGGCCCACCCCGCCCCGGAACTGGCTCAAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS-3UTR CAA 90 bp CCAATAGAAATATTTACAAACCACCAGGGTGGGTGTCCCCTGATCAGGAATAGGTCCTGCTGGGAAGCTTaGAGCTGGTTGGAGGCCCAC +
Preference number: 5 (lower is better)
Translates to: PIEIFTNHQGGCPLIRNRSCWEA*SWLEAH
Trigger: GTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGA...CCTATTCCTGATCAGGGGACACCCACCCTGGTGGTTTGTAAATATTTCTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp TGCGGGTCGCGTGGCGCCGCCGAGTTGCAGGAAAAGTaGCAGGTAGTGGAGGGCGCCCAGCGCCGCGGCCAG +
Preference number: 6 (lower is better)
Translates to: CGSRGAAELQEK*QVVEGAQRRGQ
Trigger: CTGGCCGCGGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CAA 90 bp GTTGTCCCAGGGCGCATGGCCTGCGGGTCGCGTGGCGCCGCCGAGTaGCAGGAAAAGTGCCAGGTAGTGGAGGGCGCCCAGCGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: VVPGRMACGSRGAAE*QEKCQVVEGAQRRG
Trigger: GCCGCGGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp AGTGCGTGTCCGGAGACGTGGTTGTCCCAGGGCGCATaGCCTGCGGGTCGCGTGGCGCCGCCGAGTTGCAGG +
Preference number: 6 (lower is better)
Translates to: SACPETWLSQGA*PAGRVAPPSCR
Trigger: CCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CAA 72 bp GGGCGCATGGCCTGCGGGTCGCGTGGCGCCGCCGAGTaGCAGGAAAAGTGCCAGGTAGTGGAGGGCGCCCAG +
Preference number: 6 (lower is better)
Translates to: GRMACGSRGAAE*QEKCQVVEGAQ
Trigger: CTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp GTGTCCGGAGACGTGGTTGTCCCAGGGCGCATGGCCTaGGGGTCGCGTGGCGCCGCCGAGTTGCAGGAAAAG +
Preference number: 6 (lower is better)
Translates to: VSGDVVVPGRMA*GSRGAAELQEK
Trigger: CTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp CGTGGTTGTCCCAGGGCGCATGGCCTGCGGGTCGCGTaGCGCCGCCGAGTTGCAGGAAAAGTGCCAGGTAGT +
Preference number: 6 (lower is better)
Translates to: RGCPRAHGLRVA*RRRVAGKVPGS
Trigger: ACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp TGGGGTGTCTCTGTGAAGAGTGCGTGTCCGGAGACGTaGTTGTCCCAGGGCGCATGGCCTGCGGGTCGCGTG +
Preference number: 6 (lower is better)
Translates to: WGVSVKSACPET*LSQGAWPAGRV
Trigger: CACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACTCTTCACAGAGACACCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp CAGCACCGAGTTCTCCCCGGGCTGCACCCGCAGGTATaGTTTGACCTTGTGATGCCGGGCCTTGCCGTCGCT +
Preference number: 6 (lower is better)
Translates to: QHRVLPGLHPQV*FDLVMPGLAVA
Trigger: AGCGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATACCTGCGGGTGCAGCCCGGGGAGAACTCGGTGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS TCA 72 bp TCCCCGGGCTGCACCCGCAGGTATGCTTTGACCTTGTaGTGCCGGGCCTTGCCGTCGCTGAAGTCGATCACG +
Preference number: 6 (lower is better)
Translates to: SPGCTRRYALTL*CRALPSLKSIT
Trigger: CGTGATCGACTTCAGCGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATACCTGCGGGTGCAGCCCGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS TCA 72 bp TGGCGTCCTTCCCCGAGTCCTCCTGCTGGGAAGCTTTaGGCTGGTTGGAGGCCCACGTCTGCTTGTCAGTCC +
Preference number: 6 (lower is better)
Translates to: WRPSPSPPAGKL*AGWRPTSACQS
Trigger: GGACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp TGCTGGGAAGCTTTGAGCTGGTTGGAGGCCCACGTCTaGTTGTCAGTCCAGTCCCGGTGGCTGCGCAGGTAC +
Preference number: 6 (lower is better)
Translates to: CWEALSWLEAHV*LSVQSRWLRRY
Trigger: GTACCTGCGCAGCCACCGGGACTGGACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CAA 72 bp CCTTCGTCCGTGGGCTTCACCCGGGACAGCCGAAGCTaGTGGGAGATGTTGCTGCCCACCACCTTGACCACA +
Preference number: 6 (lower is better)
Translates to: PSSVGFTRDSRS*WEMLLPTTLTT
Trigger: TGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCGGGTGAAGCCCACGGACGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp TCCTTCCCCGAGTCCTCCTGCTGGGAAGCTTTGAGCTaGTTGGAGGCCCACGTCTGCTTGTCAGTCCAGTCC +
Preference number: 6 (lower is better)
Translates to: SFPESSCWEALS*LEAHVCLSVQS
Trigger: GGACTGGACTGACAAGCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp TCGTCCGTGGGCTTCACCCGGGACAGCCGAAGCTTGTaGGAGATGTTGCTGCCCACCACCTTGACCACACTT +
Preference number: 6 (lower is better)
Translates to: SSVGFTRDSRSL*EMLLPTTLTTL
Trigger: AAGTGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCGGGTGAAGCCCACGGACGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp CTTATTTTGGTGGCGTCCTTCCCCGAGTCCTCCTGCTaGGAAGCTTTGAGCTGGTTGGAGGCCCACGTCTGC +
Preference number: 6 (lower is better)
Translates to: LILVASFPESSC*EALSWLEAHVC
Trigger: GCAGACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CAA 90 bp TCGTCCGTGGGCTTCACCCGGGACAGCCGAAGCTTGTGGGAGATGTaGCTGCCCACCACCTTGACCACACTTATTTTGGTGGCGTCCTTC +
Preference number: 6 (lower is better)
Translates to: SSVGFTRDSRSLWEM*LPTTLTTLILVASF
Trigger: GAAGGACGCCACCAAAATAAGTGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCGGGTGAAGCCCACGGACGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp GAAGGAGCAGGCCATCTCTACATCCTCGCCTGTCCGTaGCGTCATGTCATGGGGTGTCTCTGTGAAGAGTGC +
Preference number: 6 (lower is better)
Translates to: EGAGHLYILACP*RHVMGCLCEEC
Trigger: GCACTCTTCACAGAGACACCCCATGACATGACGGCACGGACAGGCGAGGATGTAGAGATGGCCTGCTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS GCA 72 bp ACACTTATTTTGGTGGCGTCCTTCCCCGAGTCCTCCTaGTGGGAAGCTTTGAGCTGGTTGGAGGCCCACGTC +
Preference number: 6 (lower is better)
Translates to: TLILVASFPESS*WEALSWLEAHV
Trigger: GACGTGGGCCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CCA 72 bp ATCTCTACATCCTCGCCTGTCCGTGCCGTCATGTCATaGGGTGTCTCTGTGAAGAGTGCGTGTCCGGAGACG +
Preference number: 6 (lower is better)
Translates to: ISTSSPVRAVMS*GVSVKSACPET
Trigger: CGTCTCCGGACACGCACTCTTCACAGAGACACCCCATGACATGACGGCACGGACAGGCGAGGATGTAGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2
CDS CAA 72 bp GGCTTCACCCGGGACAGCCGAAGCTTGTGGGAGATGTaGCTGCCCACCACCTTGACCACACTTATTTTGGTG +
Preference number: 6 (lower is better)
Translates to: GFTRDSRSLWEM*LPTTLTTLILV
Trigger: CACCAAAATAAGTGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCGGGTGAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109523.2