RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VSTM2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039257

Ensembl transcript IDs: ENSMUST00000044705.12, ENSMUST00000186352.2, ENSMUST00000205845.2, ENSMUST00000206223.2

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTCTCCCTTGACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTaGCCCAGCCAGGTGTCCCGAGATGCCTTTCTTCCATGCCAGGGG +
Preference number: 1 (lower is better)
Translates to: HSPLTGWAGILICSP*PSQVSRDAFLPCQG
Trigger: CCCCTGGCATGGAAGAAAGGCATCTCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGTCAAGGGAGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR GCA 90 bp ATATCTCAGAGGGTAGAAGACATCTGTAGGTGCAAGGTAAGAGAGTaGAAGAGATTAGCCATCTTTCCAGACTCCCTTTTTGAGGATCAG +
Preference number: 1 (lower is better)
Translates to: ISQRVEDICRCKVRE*KRLAIFPDSLFEDQ
Trigger: CTGATCCTCAAAAAGGGAGTCTGGAAAGATGGCTAATCTCTTGCACTCTCTTACCTTGCACCTACAGATGTCTTCTACCCTCTGAGATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR TCA 90 bp TTTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATaGAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGT +
Preference number: 1 (lower is better)
Translates to: FTYYPQGTCSRVRAK*RFRGNVEERKIHCR
Trigger: ACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR-3UTR GCA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCAGGTGTCCTCCCAGGGTaGCTGCTGAGGTTTGACGGC +
Preference number: 2 (lower is better)
Translates to: RGNVEERKIHCREELGAPGVLPG*LLRFDG
Trigger: GCCGTCAAACCTCAGCAGGCACCCTGGGAGGACACC...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR-3UTR GCA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCGCATGGACTTCTTCATaGTTCCCTCAGTCCCTGTGT +
Preference number: 2 (lower is better)
Translates to: GNVEERKIHCREELGAPCAWTSS*FPQSLC
Trigger: ACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGC...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR-3UTR GCA 90 bp TACCGGGGCCTAATTGTATCTCTGAGACATACAACTTATCCCCAACTCATATCTGATGCCTTTCTTCCATaGCAGGGGCCCAACAGATGC +
Preference number: 2 (lower is better)
Translates to: YRGLIVSLRHTTYPQLISDAFLP*QGPNRC
Trigger: GCATCTGTTGGGCCCCTGGCATGGAAGAAAGGCATC...AGATATGAGTTGGGGATAAGTTGTATGTCTCAGAGATACAATTAGGCCCCGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR-3UTR CCA 90 bp AATGAAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACGTCCCTGTGTCCATGTaGCAAGGTGTCCTCCCAGGG +
Preference number: 2 (lower is better)
Translates to: NEDSEGMWRKEKYIAVKNVPVSM*QGVLPG
Trigger: CCCTGGGAGGACACCTTGCCACATGGACACAGGGAC...GTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR-3UTR GCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGGCATGGACTTCTTCATaGTTCCCTCAGTCCCTGTGT +
Preference number: 2 (lower is better)
Translates to: SETYNLSPTHISEGRRHLAWTSS*FPQSLC
Trigger: ACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGC...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR-3UTR TCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGAGAGTTCGTGCAAAATaGAGATTCAGAGGGAATGTG +
Preference number: 2 (lower is better)
Translates to: SETYNLSPTHISEGRRHLRVRAK*RFRGNV
Trigger: CACATTCCCTCTGAATCTTCATTTTGCACGAACTCT...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR-3UTR GCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGGAAAGAAAAATACATTaGCGTGAAGAACTTGGCGCC +
Preference number: 2 (lower is better)
Translates to: SETYNLSPTHISEGRRHLERKIH*REELGA
Trigger: GGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTC...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR-3UTR CCA 90 bp GAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCACCCCATCCTATTTaGAAAATTGATGCATTATTT +
Preference number: 2 (lower is better)
Translates to: EGMWRKEKYIAVKNLAPHAPHPI*KIDALF
Trigger: AAATAATGCATCAATTTTCCAAATAGGATGGGGTGC...ATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR GCA 72 bp CACTCTCCCTTGACAGGCTGGGCAGGTATTCTCATCTaGTCTCCGTGGCCCAGCCAGGTGTCCCGAGATGCC +
Preference number: 3 (lower is better)
Translates to: HSPLTGWAGILI*SPWPSQVSRDA
Trigger: GGCATCTCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGTCAAGGGAGAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR TCA 72 bp CCTTTCTTCCATGCCAGGGGCCCAACAGATGCTGTCTaGGAAGAGAAGGCCACAGTGTCTGGCTCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: PFFHARGPTDAV*EEKATVSGSSR
Trigger: CCTGCTGGAGCCAGACACTGTGGCCTTCTCTTCTCAGACAGCATCTGTTGGGCCCCTGGCATGGAAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR GCA 72 bp TGGCCCAGCCAGGTGTCCCGAGATGCCTTTCTTCCATaGCAGGGGCCCAACAGATGCTGTCTGAGAAGAGAA +
Preference number: 3 (lower is better)
Translates to: WPSQVSRDAFLP*QGPNRCCLRRE
Trigger: TTCTCTTCTCAGACAGCATCTGTTGGGCCCCTGGCATGGAAGAAAGGCATCTCGGGACACCTGGCTGGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR CCA 72 bp TTGACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTaGCCCAGCCAGGTGTCCCGAGATGCCTTTCTTCCA +
Preference number: 3 (lower is better)
Translates to: LTGWAGILICSP*PSQVSRDAFLP
Trigger: TGGAAGAAAGGCATCTCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR CCA 72 bp GACTTCTTCATGCTTCCCTCAGTCCCTGTGTCCATGTaGCAAGGTGTCCTCCCAGGGTGCCTGCTGAGGTTT +
Preference number: 3 (lower is better)
Translates to: DFFMLPSVPVSM*QGVLPGCLLRF
Trigger: AAACCTCAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR TCA 72 bp CAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTaGAGAACTTGGCGCCCCATGCACACCGCACGGCCT +
Preference number: 3 (lower is better)
Translates to: QRECGGKKNTLP*RTWRPMHTARP
Trigger: AGGCCGTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR TCA 72 bp GTACTCATTCTTGCCTCTAGGAAGCCCACTCTCCCTTaGCAGGCTGGGCAGGTATTCTCATCTGCTCTCCGT +
Preference number: 3 (lower is better)
Translates to: VLILASRKPTLP*QAGQVFSSALR
Trigger: ACGGAGAGCAGATGAGAATACCTGCCCAGCCTGTCAAGGGAGAGTGGGCTTCCTAGAGGCAAGAATGAGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR GCA 72 bp AGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTaGCGTGAAGAACTTGGCGCCCCATGCACACCGCAC +
Preference number: 3 (lower is better)
Translates to: RFRGNVEERKIH*REELGAPCTPH
Trigger: GTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
3UTR TCA 72 bp GTGCAAGAGATTAGCCATCTTTCCAGACTCCCTTTTTaGGGATCAGTAAACCTAGGACCAGTACAGGGTGGT +
Preference number: 3 (lower is better)
Translates to: VQEISHLSRLPF*GSVNLGPVQGG
Trigger: ACCACCCTGTACTGGTCCTAGGTTTACTGATCCTCAAAAAGGGAGTCTGGAAAGATGGCTAATCTCTTGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR GCA 72 bp AGGGTAGAAGACATCTGTAGGTGCAAGGTAAGAGAGTaGAAGAGATTAGCCATCTTTCCAGACTCCCTTTTT +
Preference number: 3 (lower is better)
Translates to: RVEDICRCKVRE*KRLAIFPDSLF
Trigger: AAAAAGGGAGTCTGGAAAGATGGCTAATCTCTTGCACTCTCTTACCTTGCACCTACAGATGTCTTCTACCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR GCA 72 bp CAACTCATATCTCAGAGGGTAGAAGACATCTGTAGGTaGAAGGTAAGAGAGTGCAAGAGATTAGCCATCTTT +
Preference number: 3 (lower is better)
Translates to: QLISQRVEDICR*KVRECKRLAIF
Trigger: AAAGATGGCTAATCTCTTGCACTCTCTTACCTTGCACCTACAGATGTCTTCTACCCTCTGAGATATGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
3UTR TCA 72 bp CCACAATCCTGGGTATTTAATGGAGTTGTCATGAAATaGAAAATAACTAGCTACCGGGGCCTAATTGTATCT +
Preference number: 3 (lower is better)
Translates to: PQSWVFNGVVMK*KITSYRGLIVS
Trigger: AGATACAATTAGGCCCCGGTAGCTAGTTATTTTTCATTTCATGACAACTCCATTAAATACCCAGGATTGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR CCA 90 bp ACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCGAGCACTGGAGGCTCCGTaGCGACGCGGGCCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: TGWAGILICSPWPSQVSRALEAP*RRGPLL
Trigger: GAGCAGCGGCCCGCGTCGCCACGGAGCCTCCAGTGC...TCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR TCA 90 bp ACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCGAGGGCGCCCGGCACGCTaGGCGCCAGCTCGTGTAACA +
Preference number: 4 (lower is better)
Translates to: TGWAGILICSPWPSQVSRGRPAR*APARVT
Trigger: TGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCC...TCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR TCA 90 bp ACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCGAGGCCTCAGGAACTCCTaGTCCAGCGGGAGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: TGWAGILICSPWPSQVSRGLRNS*SSGRAP
Trigger: GGGAGCCCTCCCGCTGGATCAGGAGTTCCTGAGGCC...TCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR CCA 90 bp CTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCCTGCTGAAGAGGTGGCTCCGCTaGCCCGGAACGCGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: LPSVPVSMWQGVLPGCLLKRWLR*PGTRRA
Trigger: TGCCCTGCGCGTTCCGGGCCAGCGGAGCCACCTCTT...CAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp CTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGGCACTGGAGGCTCCGTaGCGACGCGGGCCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LHASLSPCVHVARCPPRVALEAP*RRGPLL
Trigger: GAGCAGCGGCCCGCGTCGCCACGGAGCCTCCAGTGC...CACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp CTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCCTGCTGCGCGGGCCGCTGCTCTaGATGTGGGACACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LPSVPVSMWQGVLPGCLLRGPLL*MWDTAS
Trigger: AGAGGCAGTGTCCCACATTCAGAGCAGCGGCCCGCG...CAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCGGCGACGCGGGCCGCTaGTCTGAATGTGGGACACTG +
Preference number: 4 (lower is better)
Translates to: FMLPSVPVSMWQGVLPGCGDAGR*SECGTL
Trigger: CAGTGTCCCACATTCAGAGCAGCGGCCCGCGTCGCC...GCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp CTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCCGGTACCGGAGCCGTaGCTCTGGCGCAGAAGGACA +
Preference number: 4 (lower is better)
Translates to: LHASLSPCVHVARCPPRVPVPEP*LWRRRT
Trigger: TGTCCTTCTGCGCCAGAGGCACGGCTCCGGTACCGG...CACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTGACAGGCTGGGCAGGTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCCTTATTTGTTACCTTaGTCCGGGCGCCCGGCACGC +
Preference number: 4 (lower is better)
Translates to: LTGWAGILICSPWPSQVSPYLLP*SGRPAR
Trigger: GCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGG...GGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATACCTGCCCAGCCTGTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR CCA 90 bp GTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCGAGATGCCTTTCTTCCCAGCGAGTAAGAGGTaGCTCCGCTGGCCCGGAACG +
Preference number: 4 (lower is better)
Translates to: VFSSALRGPARCPEMPFFPASKR*LRWPGT
Trigger: CGTTCCGGGCCAGCGGAGCCACCTCTTACTCGCTGG...GAAGAAAGGCATCTCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR GCA 90 bp CTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGTGGTTTCAGAGGTGGTaGGGACAGCAGCGCCTGCGT +
Preference number: 4 (lower is better)
Translates to: LHASLSPCVHVARCPPRVWFQRW*GQQRLR
Trigger: ACGCAGGCGCTGCTGTCCGCACCACCTCTGAAACCA...CACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp AAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCACACCGCACGGCCAAGAGGTGGCTCCGCTaGCCCGGAACGCGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: KEKYIAVKNLAPHAHRTAKRWLR*PGTRRA
Trigger: TGCCCTGCGCGTTCCGGGCCAGCGGAGCCACCTCTT...GGCCGTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp TTTGCATGGACTTCTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGCCGGAGCCGTGCCTCTaGCGCAGAAGGACAGCCTGC +
Preference number: 4 (lower is better)
Translates to: FAWTSSCFPQSLCPCGKVPEPCL*RRRTAC
Trigger: GCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGG...CACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCAAGAGCAGCAGGCTGTaGAGTAGCAGAGGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: FMLPSVPVSMWQGVLPGCKSSRL*SSRGSR
Trigger: CCTGCTACCTCTGCTACTGCACAGCCTGCTGCTCTT...GCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp GTATTCTCATCTGCTCTCCGTGGCCCAGCCAGGTGTCCCGAGATGCCTTTCTTCGGTGTGAGATGTCATTaGCCTGGACTCGCACGGTGC +
Preference number: 4 (lower is better)
Translates to: VFSSALRGPARCPEMPFFGVRCH*PGLARC
Trigger: GCACCGTGCGAGTCCAGGGCAATGACATCTCACACC...GAAGAAAGGCATCTCGGGACACCTGGCTGGGCCACGGAGAGCAGATGAGAATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR GCA 90 bp AAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCACACCGCACGGCCGTGGGACACTGCCTCTaGAGCTTGCATGTTGGGCGG +
Preference number: 4 (lower is better)
Translates to: KEKYIAVKNLAPHAHRTAVGHCL*SLHVGR
Trigger: CCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCAC...GGCCGTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCCCAGCGAGTAAGAGGTaGCTCCGCTGGCCCGGAACG +
Preference number: 4 (lower is better)
Translates to: GNVEERKIHCREELGAPCPASKR*LRWPGT
Trigger: CGTTCCGGGCCAGCGGAGCCACCTCTTACTCGCTGG...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp TCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGAGGGAATGTGGAGGGCGCCCGGCACGCTaGGCGCCAGCTCGTGTAACA +
Preference number: 4 (lower is better)
Translates to: SRDLLKSSCKMKIQRECGGRPAR*APARVT
Trigger: TGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCC...TCCACATTCCCTCTGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCACGCGGGCCGCTGCTCTaGATGTGGGACACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: RGNVEERKIHCREELGAPRGPLL*MWDTAS
Trigger: AGAGGCAGTGTCCCACATTCAGAGCAGCGGCCCGCG...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCGCGGACAGCAGCGCCTaGGTTGTTGGAGCTGACAGC +
Preference number: 4 (lower is better)
Translates to: GNVEERKIHCREELGAPCADSSA*VVGADS
Trigger: GCTGTCAGCTCCAACAACGCAGGCGCTGCTGTCCGC...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCGGCTGGTTTCAGAGGTaGTGCGGACAGCAGCGCCTG +
Preference number: 4 (lower is better)
Translates to: GNVEERKIHCREELGAPCGWFQR*CGQQRL
Trigger: CAGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCC...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCACAGCCGAAGCCGGTGTaGGATGTCATTGCCCTGGAC +
Preference number: 4 (lower is better)
Translates to: RGNVEERKIHCREELGAPQPKPV*DVIALD
Trigger: GTCCAGGGCAATGACATCTCACACCGGCTTCGGCTG...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTTGCATGGACTTCTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGAAGAGCAGCAGGCTGTaGAGTAGCAGAGGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: FAWTSSCFPQSLCPCGKVKSSRL*SSRGSR
Trigger: CCTGCTACCTCTGCTACTGCACAGCCTGCTGCTCTT...CACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCACCTTATTTGTTACCTTaGTCCGGGCGCCCGGCACGC +
Preference number: 4 (lower is better)
Translates to: RGNVEERKIHCREELGAPPYLLP*SGRPAR
Trigger: GCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGG...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp GAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATACTGCCTCTGCAGCTTaGATGTTGGGCGGCGCGAAG +
Preference number: 4 (lower is better)
Translates to: EGMWRKEKYIAVKNLAPHTASAA*MLGGAK
Trigger: CTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGT...ATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCAGTGGGACACTGCCTCTaGAGCTTGCATGTTGGGCGG +
Preference number: 4 (lower is better)
Translates to: RGNVEERKIHCREELGAPVGHCL*SLHVGR
Trigger: CCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCAC...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp GAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATCTGCAGCTTGCATGTTaGGCGGCGCGAAGCGCGATA +
Preference number: 4 (lower is better)
Translates to: EGMWRKEKYIAVKNLAPHLQLAC*AARSAI
Trigger: TATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAG...ATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp TTTGCATGGACTTCTTCATGCTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGGAGATGTCATTGCCCTaGACTCGCACGGTGCTGATT +
Preference number: 4 (lower is better)
Translates to: FAWTSSCFPQSLCPCGKVEMSLP*TRTVLI
Trigger: AATCAGCACCGTGCGAGTCCAGGGCAATGACATCTC...CACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp TCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGAGGGAATGTGGACCCGGGGAGGCTCCTTaGGGTACCACCACTGAATCT +
Preference number: 4 (lower is better)
Translates to: SRDLLKSSCKMKIQRECGPGEAP*GTTTES
Trigger: AGATTCAGTGGTGGTACCTCAAGGAGCCTCCCCGGG...TCCACATTCCCTCTGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp TTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGGCCTCAGGAACTCCTaGTCCAGCGGGAGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: LHTILKGLAQEFVQNEDSGLRNS*SSGRAP
Trigger: GGGAGCCCTCCCGCTGGATCAGGAGTTCCTGAGGCC...TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGGGCTGGTTTCAGAGGTaGTGCGGACAGCAGCGCCTG +
Preference number: 4 (lower is better)
Translates to: SETYNLSPTHISEGRRHLGWFQR*CGQQRL
Trigger: CAGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCC...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR CCA 90 bp AATGAAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACCCGGAGCCGTGCCTCTaGCGCAGAAGGACAGCCTGC +
Preference number: 4 (lower is better)
Translates to: NEDSEGMWRKEKYIAVKNPEPCL*RRRTAC
Trigger: GCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGG...GTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGCCCGGGGAGGCTCCTTaGGGTACCACCACTGAATCT +
Preference number: 4 (lower is better)
Translates to: SETYNLSPTHISEGRRHLPGEAP*GTTTES
Trigger: AGATTCAGTGGTGGTACCTCAAGGAGCCTCCCCGGG...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR GCA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCCTGAATGTGGGACACTaGCTCTGCAGCTTGCATGTT +
Preference number: 4 (lower is better)
Translates to: GNVEERKIHCREELGAPCLNVGH*LCSLHV
Trigger: AACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAG...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGGCGACGCGGGCCGCTaGTCTGAATGTGGGACACTG +
Preference number: 4 (lower is better)
Translates to: LHTILKGLAQEFVQNEDSGDAGR*SECGTL
Trigger: CAGTGTCCCACATTCAGAGCAGCGGCCCGCGTCGCC...TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp AATGAAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACGCGGACAGCAGCGCCTaGGTTGTTGGAGCTGACAGC +
Preference number: 4 (lower is better)
Translates to: NEDSEGMWRKEKYIAVKNADSSA*VVGADS
Trigger: GCTGTCAGCTCCAACAACGCAGGCGCTGCTGTCCGC...GTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp TTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCACTGCGTTGTTGGAGCTaGCAGCACTGGAGGCTCCGT +
Preference number: 4 (lower is better)
Translates to: LHTILKGLAQEFVQNEDSLRCWS*QHWRLR
Trigger: ACGGAGCCTCCAGTGCTGTCAGCTCCAACAACGCAG...TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR TCA 90 bp AATGAAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACCTGCGTTGTTGGAGCTaGCAGCACTGGAGGCTCCGT +
Preference number: 4 (lower is better)
Translates to: NEDSEGMWRKEKYIAVKNLRCWS*QHWRLR
Trigger: ACGGAGCCTCCAGTGCTGTCAGCTCCAACAACGCAG...GTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAACTGCCTCTGCAGCTTaGATGTTGGGCGGCGCGAAG +
Preference number: 4 (lower is better)
Translates to: LHTILKGLAQEFVQNEDSTASAA*MLGGAK
Trigger: CTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGT...TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CCA 90 bp AATGAAGATTCAGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACCTGCAGCTTGCATGTTaGGCGGCGCGAAGCGCGATA +
Preference number: 4 (lower is better)
Translates to: NEDSEGMWRKEKYIAVKNLQLAC*AARSAI
Trigger: TATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAG...GTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TTACATACTATCCTCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGGTGTGAGATGTCATTaGCCTGGACTCGCACGGTGC +
Preference number: 4 (lower is better)
Translates to: LHTILKGLAQEFVQNEDSGVRCH*PGLARC
Trigger: GCACCGTGCGAGTCCAGGGCAATGACATCTCACACC...TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR GCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGCTGAATGTGGGACACTaGCTCTGCAGCTTGCATGTT +
Preference number: 4 (lower is better)
Translates to: SETYNLSPTHISEGRRHLLNVGH*LCSLHV
Trigger: AACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAG...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR GCA 90 bp TCTGAGACATACAACTTATCCCCAACTCATATCTCAGAGGGTAGAAGACATCTGGGTGCTGATTTTAGTTaGATCCTTATTTGTTACCTT +
Preference number: 4 (lower is better)
Translates to: SETYNLSPTHISEGRRHLGADFS*ILICYL
Trigger: AAGGTAACAAATAAGGATGCAACTAAAATCAGCACC...CAGATGTCTTCTACCCTCTGAGATATGAGTTGGGGATAAGTTGTATGTCTCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS GCA 90 bp CCTGGGCCGGTACCGGAGCCGTGCCTCTGGCGCAGAAGGACAGCCTaGCCTGATGGTGGTGATGCTGATGAAGAAGCAGCAGCTGCAGCA +
Preference number: 5 (lower is better)
Translates to: PGPVPEPCLWRRRTA*PDGGDADEEAAAAA
Trigger: TGCTGCAGCTGCTGCTTCTTCATCAGCATCACCACCATCAGGGCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGGTACCGGCCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 90 bp GGCCGCTGCTCTGAATGTGGGACACTGCCTCTGCAGCTTGCATGTTaGGCGGCGCGAAGCGCGATAGCACACGCAGCAATGCCTGGGCCT +
Preference number: 5 (lower is better)
Translates to: GRCSECGTLPLQLAC*AARSAIAHAAMPGP
Trigger: AGGCCCAGGCATTGCTGCGTGTGCTATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAGAGCAGCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS-3UTR CAA 90 bp CTTCCCTCAGTCCCTGTGTCCATGTGGCAAGGTGTCCTCCCAGGGTGCCTGCTGTCCTTATTTGTTACCTaGCTCCGGGCGCCCGGCACG +
Preference number: 5 (lower is better)
Translates to: LPSVPVSMWQGVLPGCLLSLFVT*LRAPGT
Trigger: CGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGGA...CAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS TCA 90 bp AACACCTTCGTCCTGCAATCGTACGGCGGACAGCCGAAGCCGGTGTaGGATGTCATTGCCCTGGACTCGCACGGTGCTGATTTTAGTTGC +
Preference number: 5 (lower is better)
Translates to: NTFVLQSYGGQPKPV*DVIALDSHGADFSC
Trigger: GCAACTAAAATCAGCACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACGATTGCAGGACGAAGGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 90 bp TGCCCTGGACTCGCACGGTCTGTCTGCTTGGGAGAGTGGGGATGCTaGACAGCCAAGGGGACCTCATCATTTCCTCTAAATTCTCCACTT +
Preference number: 5 (lower is better)
Translates to: CPGLARSVCLGEWGC*TAKGTSSFPLNSPL
Trigger: AAGTGGAGAATTTAGAGGAAATGATGAGGTCCCCTTGGCTGTCCAGCATCCCCACTCTCCCAAGCAGACAGACCGTGCGAGTCCAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS-3UTR CAA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCTCTGCAGCTTGCATGTaGGGCGGCGCGAAGCGCGAT +
Preference number: 5 (lower is better)
Translates to: GNVEERKIHCREELGAPCSAACM*GGAKRD
Trigger: ATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAGA...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CAA 90 bp GGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATGCCGGTGTGAGATGTCATaGCCCTGGACTCGCACGGTG +
Preference number: 5 (lower is better)
Translates to: GNVEERKIHCREELGAPCRCEMS*PWTRTV
Trigger: CACCGTGCGAGTCCAGGGCAATGACATCTCACACCG...GCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CAA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCACACTGCCTCTGCAGCTaGCATGTTGGGCGGCGCGAA +
Preference number: 5 (lower is better)
Translates to: RGNVEERKIHCREELGAPHCLCS*HVGRRE
Trigger: TTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTG...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CAA 90 bp AGAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATCCTTATTTGTTACCTaGCTCCGGGCGCCCGGCACG +
Preference number: 5 (lower is better)
Translates to: RGNVEERKIHCREELGAPSLFVT*LRAPGT
Trigger: CGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGGA...TGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CAA 90 bp GAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATCGGTGTGAGATGTCATaGCCCTGGACTCGCACGGTG +
Preference number: 5 (lower is better)
Translates to: EGMWRKEKYIAVKNLAPHRCEMS*PWTRTV
Trigger: CACCGTGCGAGTCCAGGGCAATGACATCTCACACCG...ATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS-3UTR CAA 90 bp TACCGGGGCCTAATTGTATCTCTGAGACATACAACTTATCCCCAACTCATATCTCACTGCCTCTGCAGCTaGCATGTTGGGCGGCGCGAA +
Preference number: 5 (lower is better)
Translates to: YRGLIVSLRHTTYPQLISHCLCS*HVGRRE
Trigger: TTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTG...AGATATGAGTTGGGGATAAGTTGTATGTCTCAGAGATACAATTAGGCCCCGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044705.12
CDS-3UTR CAA 90 bp GAGGGAATGTGGAGGAAAGAAAAATACATTGCCGTGAAGAACTTGGCGCCCCATCCAGGAGGTGGGTTCTaGTCATCGTGGCTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: EGMWRKEKYIAVKNLAPHPGGGF*SSWLVS
Trigger: TGAAACCAGCCACGATGACAAGAACCCACCTCCTGG...ATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 90 bp CTGGACAGCCAAGGGGACCTCATCATTTCCTCTAAATTCTCCACTTaGAACCGAACACTGGATGGAAGGTCCAACATCATGAAGGCCTTG +
Preference number: 5 (lower is better)
Translates to: LDSQGDLIISSKFST*NRTLDGRSNIMKAL
Trigger: CAAGGCCTTCATGATGTTGGACCTTCCATCCAGTGTTCGGTTCCAAGTGGAGAATTTAGAGGAAATGATGAGGTCCCCTTGGCTGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS-3UTR CAA 90 bp TCAAGGGACTTGCTCAAGAGTTCGTGCAAAATGAAGATTCAGAGGGAATGTGGACCAGGAGGTGGGTTCTaGTCATCGTGGCTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: SRDLLKSSCKMKIQRECGPGGGF*SSWLVS
Trigger: TGAAACCAGCCACGATGACAAGAACCCACCTCCTGG...TCCACATTCCCTCTGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS TCA 72 bp AAACACCTTCGTCCTTGCTCCGGGCGCCCGGCACGCTaGGCGCCAGCTCGTGTAACAGCTCCCGGGGAGGCT +
Preference number: 6 (lower is better)
Translates to: KHLRPCSGRPAR*APARVTAPGEA
Trigger: AGCCTCCCCGGGAGCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGACGAAGGTGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206223.2
CDS GCA 72 bp GTGGCGACGCGGGCCGCTGCTCTGAATGTGGGACACTaGCTCTGCAGCTTGCATGTTGGGCGGCGCGAAGCG +
Preference number: 6 (lower is better)
Translates to: VATRAAALNVGH*LCSLHVGRREA
Trigger: CGCTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAGAGCAGCGGCCCGCGTCGCCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS TCA 72 bp CCTTATTTGTTACCTTGCTCCGGGCGCCCGGCACGCTaGGCGCCAGCTCGTGTAACAGCTCCCGGGGAGGCT +
Preference number: 6 (lower is better)
Translates to: PYLLPCSGRPAR*APARVTAPGEA
Trigger: AGCCTCCCCGGGAGCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 72 bp GCGGGAGGGCTCCCAGGAGGTGGGTTCTTGTCATCGTaGCTGGTTTCAGAGGTGGTGCGGACAGCAGCGCCT +
Preference number: 6 (lower is better)
Translates to: AGGLPGGGFLSS*LVSEVVRTAAP
Trigger: AGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CCA 72 bp CAAGAGCAGAGACAGCAGAGGATCGGCACTGTAGCCTaGGCCGGTACCGGAGCCGTGCCTCTGGCGCAGAAG +
Preference number: 6 (lower is better)
Translates to: QEQRQQRIGTVA*AGTGAVPLAQK
Trigger: CTTCTGCGCCAGAGGCACGGCTCCGGTACCGGCCCAGGCTACAGTGCCGATCCTCTGCTGTCTCTGCTCTTG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 72 bp GAGGGCTCCCAGGAGGTGGGTTCTTGTCATCGTGGCTaGTTTCAGAGGTGGTGCGGACAGCAGCGCCTGCGT +
Preference number: 6 (lower is better)
Translates to: EGSQEVGSCHRG*FQRWCGQQRLR
Trigger: ACGCAGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 72 bp CTGGTTTCAGAGGTGGTGCGGACAGCAGCGCCTGCGTaGTTGGAGCTGACAGCACTGGAGGCTCCGTGGCGA +
Preference number: 6 (lower is better)
Translates to: LVSEVVRTAAPA*LELTALEAPWR
Trigger: TCGCCACGGAGCCTCCAGTGCTGTCAGCTCCAACAACGCAGGCGCTGCTGTCCGCACCACCTCTGAAACCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 72 bp GATGGAAGGTCCAACATCATGAAGGCCTTGACAGTCTaGCTCCGGGCGCCCGGCACGCTGAGCGCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: DGRSNIMKALTV*LRAPGTLSASS
Trigger: CGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGACTGTCAAGGCCTTCATGATGTTGGACCTTCCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS CAA 90 bp TCAGGAACTCCTGATCCAGCGGGAGGGCTCCCAGGAGGTGGGTTCTaGTCATCGTGGCTGGTTTCAGAGGTGGTGCGGACAGCAGCGCCT +
Preference number: 6 (lower is better)
Translates to: SGTPDPAGGLPGGGF*SSWLVSEVVRTAAP
Trigger: AGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGCTGGATCAGGAGTTCCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 72 bp CCTGATCCAGCGGGAGGGCTCCCAGGAGGTGGGTTCTaGTCATCGTGGCTGGTTTCAGAGGTGGTGCGGACA +
Preference number: 6 (lower is better)
Translates to: PDPAGGLPGGGF*SSWLVSEVVRT
Trigger: TGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGCTGGATCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 72 bp CGTACGGCGGACAGCCGAAGCCGGTGTGAGATGTCATaGCCCTGGACTCGCACGGTCTGTCTGCTTGGGAGA +
Preference number: 6 (lower is better)
Translates to: RTADSRSRCEMS*PWTRTVCLLGR
Trigger: TCTCCCAAGCAGACAGACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS CAA 90 bp CGAACACTGGATGGAAGGTCCAACATCATGAAGGCCTTGACAGTCTaGCTCCGGGCGCCCGGCACGCTGAGCGCCAGCTCGTGTAACAGC +
Preference number: 6 (lower is better)
Translates to: RTLDGRSNIMKALTV*LRAPGTLSASSCNS
Trigger: GCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGACTGTCAAGGCCTTCATGATGTTGGACCTTCCATCCAGTGTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS CAA 90 bp ACTTGGAACCGAACACTGGATGGAAGGTCCAACATCATGAAGGCCTaGACAGTCTTGCTCCGGGCGCCCGGCACGCTGAGCGCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: TWNRTLDGRSNIMKA*TVLLRAPGTLSASS
Trigger: CGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGACTGTCAAGGCCTTCATGATGTTGGACCTTCCATCCAGTGTTCGGTTCCAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS CAA 90 bp TCCTGCAATCGTACGGCGGACAGCCGAAGCCGGTGTGAGATGTCATaGCCCTGGACTCGCACGGTCTGTCTGCTTGGGAGAGTGGGGATG +
Preference number: 6 (lower is better)
Translates to: SCNRTADSRSRCEMS*PWTRTVCLLGRVGM
Trigger: CATCCCCACTCTCCCAAGCAGACAGACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACGATTGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS TCA 72 bp GTCCTGCAATCGTACGGCGGACAGCCGAAGCCGGTGTaGGATGTCATTGCCCTGGACTCGCACGGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: VLQSYGGQPKPV*DVIALDSHGAD
Trigger: ATCAGCACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACGATTGCAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS GCA 72 bp GTACCGGAGCCGTGCCTCTGGCGCAGAAGGACAGCCTaGCCTGATGGTGGTGATGCTGATGAAGAAGCAGCA +
Preference number: 6 (lower is better)
Translates to: VPEPCLWRRRTA*PDGGDADEEAA
Trigger: TGCTGCTTCTTCATCAGCATCACCACCATCAGGGCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGGTAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 72 bp TCTGAATGTGGGACACTGCCTCTGCAGCTTGCATGTTaGGCGGCGCGAAGCGCGATAGCACACGCAGCAATG +
Preference number: 6 (lower is better)
Translates to: SECGTLPLQLAC*AARSAIAHAAM
Trigger: CATTGCTGCGTGTGCTATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044705.12
ENSMUST00000186352.2
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 90 bp GCGCAGGGCATTTCGATATCGTCACCCTCTCGCACGGTTACATCTTaGGGGACTTCGGTGAATGTAGCGTCGGCCACGAAGAGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: AQGISISSPSRTVTS*GTSVNVASATKSSR
Trigger: CCTGCTGCTCTTCGTGGCCGACGCTACATTCACCGAAGTCCCCAAAGATGTAACCGTGCGAGAGGGTGACGATATCGAAATGCCCTGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
ENSMUST00000206223.2
CDS CAA 72 bp CGTACGGCGGACAGCCGAAGCCGGTGTGAGATGTCATaGCCCTGGACTCGCACGGTGCTGATTTTAGTTGCA +
Preference number: 6 (lower is better)
Translates to: RTADSRSRCEMS*PWTRTVLILVA
Trigger: TGCAACTAAAATCAGCACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS GCA 72 bp GTCATTGCCCTGGACTCGCACGGTGCTGATTTTAGTTaGATCCTTATTTGTTACCTTGCTCCGGGCGCCCGG +
Preference number: 6 (lower is better)
Translates to: VIALDSHGADFS*ILICYLAPGAR
Trigger: CCGGGCGCCCGGAGCAAGGTAACAAATAAGGATGCAACTAAAATCAGCACCGTGCGAGTCCAGGGCAATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044705.12
ENSMUST00000205845.2
CDS CCA 72 bp CTCGCACGGTCTGTCTGCTTGGGAGAGTGGGGATGCTaGACAGCCAAGGGGACCTCATCATTTCCTCTAAAT +
Preference number: 6 (lower is better)
Translates to: LARSVCLGEWGC*TAKGTSSFPLN
Trigger: ATTTAGAGGAAATGATGAGGTCCCCTTGGCTGTCCAGCATCCCCACTCTCCCAAGCAGACAGACCGTGCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2
CDS CCA 72 bp CAAGGGGACCTCATCATTTCCTCTAAATTCTCCACTTaGAACCGAACACTGGATGGAAGGTCCAACATCATG +
Preference number: 6 (lower is better)
Translates to: QGDLIISSKFST*NRTLDGRSNIM
Trigger: CATGATGTTGGACCTTCCATCCAGTGTTCGGTTCCAAGTGGAGAATTTAGAGGAAATGATGAGGTCCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186352.2