Pregenerated sensors for VSNL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054459Ensembl transcript IDs: ENSMUST00000072299.7, ENSMUST00000220506.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTaGATGGAACATCAAGACTTGTGTGCAGTCCATAGCATCGACATC | + |
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Preference number: 1 (lower is better) Translates to: VVCVCVCVCVCVAAD*MEHQDLCAVHSIDI Trigger: GATGTCGATGCTATGGACTGCACACAAGTCTTGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACACACCAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR GCA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTATTTGCAGCACGCTTCTaGCCAGGCTTTGGAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLFAARF*PGFGGR Trigger: TCTTCCTCCAAAGCCTGGGCAGAAGCGTGCTGCAAA...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR CCA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTAACACATATCACATTGTaGCAGGTTGTCAGATTTGTT | + |
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Preference number: 2 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLTHITL*QVVRFV Trigger: AACAAATCTGACAACCTGCCACAATGTGATATGTGT...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAATTTGCAGCACGCTTCTaGCCAGGCTTTGGAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: RVSVLLILYNQGTQALAKFAARF*PGFGGR Trigger: TCTTCCTCCAAAGCCTGGGCAGAAGCGTGCTGCAAA...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR GCA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACAATCATAGAATTCTTTaGAGCACGCTTCTGCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SSTILQENGDAAHNKLHYNHRIL*STLLPR Trigger: CCTGGGCAGAAGCGTGCTGCAAAGAATTCTATGATT...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAACTTCTGCCCAGGCTTTaGAGGAAGATGTATTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: RVSVLLILYNQGTQALAKLLPRL*RKMYFN Trigger: ATTAAAATACATCTTCCTCCAAAGCCTGGGCAGAAG...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAAACACATATCACATTGTaGCAGGTTGTCAGATTTGTT | + |
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Preference number: 2 (lower is better) Translates to: RVSVLLILYNQGTQALAKTHITL*QVVRFV Trigger: AACAAATCTGACAACCTGCCACAATGTGATATGTGT...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR GCA 72 bp | GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTaGAGACTGAATGGAACATCAAGACTTGTGTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: GVCVCVCVCVCS*RLNGTSRLVCS Trigger: ACTGCACACAAGTCTTGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACACACC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR CAA 90 bp | AATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGATGGAACATCAAGACTaGTGTGCAGTCCATAGCATC | + |
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Preference number: 3 (lower is better) Translates to: NGDAAHNKLHYRGGRVSVMEHQD*CAVHSI Trigger: GATGCTATGGACTGCACACAAGTCTTGATGTTCCAT...CACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACATGGAACATCAAGACTaGTGTGCAGTCCATAGCATC | + |
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Preference number: 3 (lower is better) Translates to: SSTILQENGDAAHNKLHYMEHQD*CAVHSI Trigger: GATGCTATGGACTGCACACAAGTCTTGATGTTCCAT...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCACCAGGTCCTCCATaGCTTCTGGGGCCAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: QENGDAAHNKLHYRGGRVSPGPP*LLGPVC Trigger: GCAAACTGGCCCCAGAAGTCATGGAGGACCTGGTGA...GACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | CAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCCGTGCTGCGCGAACTTaGAGGCATCTCCATAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QENGDAAHNKLHYRGGRVRAART*RHLHRG Trigger: TCCCCTATGGAGATGCCTCCAAGTTCGCGCAGCACG...GACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTGAATGGAACATCAGCATCTCCACTCGGGTaGTCTTGCCGTCACCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VCVCVCVCVCSCRLNGTSASPLG*SCRHRP Trigger: TGGACGGTGACGGCAAGATCACCCGAGTGGAGATGC...TGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTACGTGCTGCGCGAACTTaGAGGCATCTCCATAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLRAART*RHLHRG Trigger: TCCCCTATGGAGATGCCTCCAAGTTCGCGCAGCACG...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | AGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGGCCCAGTTCAGTTTCTaGTCAAAGCTACCTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: RMVTQPIISYITVGEGSQAQFSF*SKLPLE Trigger: CTCCAGAGGTAGCTTTGAGCAGAAACTGAACTGGGC...CTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCTTATCCATCTTGCTaGAAATCTTGTCCACCCGCT | + |
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Preference number: 4 (lower is better) Translates to: QENGDAAHNKLHYRGGRVSYPSC*KSCPPA Trigger: AGCGGGTGGACAAGATTTTCAGCAAGATGGATAAGA...GACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCCACTGCTTAAGCTCATaGTCATTGAACTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: QENGDAAHNKLHYRGGRVHCLSS*SLNSVL Trigger: GAGCACTGAGTTCAATGAGCATGAGCTTAAGCAGTG...GACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTGAATGGAACATCAGTCCTCCATGACTTCTaGGGCCAGTTTGCTATTCTG | + |
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Preference number: 4 (lower is better) Translates to: VCVCVCVCVCSCRLNGTSVLHDF*GQFAIL Trigger: CAGAATAGCAAACTGGCCCCAGAAGTCATGGAGGAC...TGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | CCTGTGTGTCTGTCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATCTCGGAAATCGATGGTaGCATCACCGTTCTTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: PVCLSSTILQENGDAAHNLGNRW*HHRSCR Trigger: TCGACAAGAACGGTGATGGCACCATCGATTTCCGAG...ATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGACAGACACACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACTCACCAGGTCCTCCATaGCTTCTGGGGCCAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SSTILQENGDAAHNKLHYSPGPP*LLGPVC Trigger: GCAAACTGGCCCCAGAAGTCATGGAGGACCTGGTGA...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | AATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCCAGATCATACATGTTaGAAGCCCAGTTCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: NGDAAHNKLHYRGGRVSVPDHTC*KPSSVS Trigger: AGAAACTGAACTGGGCTTTCAACATGTATGATCTGG...CACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | AATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGGCAGAAGTAATACAATaGAAGGGTCGCTTTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: NGDAAHNKLHYRGGRVSVAEVIQ*KGRFLQ Trigger: CTGCAAAAAGCGACCCTTCCATTGTATTACTTCTGC...CACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTAGCAGAAGTAATACAATaGAAGGGTCGCTTTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLAEVIQ*KGRFLQ Trigger: CTGCAAAAAGCGACCCTTCCATTGTATTACTTCTGC...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTGAATGGAACATCACCAGATCATACATGTTaGAAGCCCAGTTCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: VCVCVCVCVCSCRLNGTSPDHTC*KPSSVS Trigger: AGAAACTGAACTGGGCTTTCAACATGTATGATCTGG...TGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTATCATCCAGTGTAATCTaGTCATCTTTGTTCTTATCC | + |
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Preference number: 4 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLSSSVI*SSLFLS Trigger: GGATAAGAACAAAGATGACCAGATTACACTGGATGA...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR TCA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACTCTTATCCATCTTGCTaGAAATCTTGTCCACCCGCT | + |
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Preference number: 4 (lower is better) Translates to: SSTILQENGDAAHNKLHYSYPSC*KSCPPA Trigger: AGCGGGTGGACAAGATTTTCAGCAAGATGGATAAGA...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCACTGCTTAAGCTCATaGTCATTGAACTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SSTILQENGDAAHNKLHYHCLSS*SLNSVL Trigger: GAGCACTGAGTTCAATGAGCATGAGCTTAAGCAGTG...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAACTCGGAAATCGATGGTaGCATCACCGTTCTTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: RVSVLLILYNQGTQALAKLGNRW*HHRSCR Trigger: TCGACAAGAACGGTGATGGCACCATCGATTTCCGAG...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAAGTCCTCCATGACTTCTaGGGCCAGTTTGCTATTCTG | + |
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Preference number: 4 (lower is better) Translates to: RVSVLLILYNQGTQALAKVLHDF*GQFAIL Trigger: CAGAATAGCAAACTGGCCCCAGAAGTCATGGAGGAC...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR GCA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACGGAAGGGTCGCTTTTTaGAGCTTCTTTGAATTCATC | + |
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Preference number: 4 (lower is better) Translates to: SSTILQENGDAAHNKLHYGRVAF*SFFEFI Trigger: GATGAATTCAAAGAAGCTGCAAAAAGCGACCCTTCC...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | AGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGATCTTGCTGAAAATCTaGTCCACCCGCTGTTCAGGC | + |
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Preference number: 5 (lower is better) Translates to: RMVTQPIISYITVGEGSQILLKI*STRCSG Trigger: GCCTGAACAGCGGGTGGACAAGATTTTCAGCAAGAT...CTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | GACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTGCTACTATTAAGCTCATGCTCATaGAACTCAGTGCTCTTCACC | + |
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Preference number: 5 (lower is better) Translates to: DAAHNKLHYRGGRVSVLLLSSCS*NSVLFT Trigger: GGTGAAGAGCACTGAGTTCAATGAGCATGAGCTTAA...TAGTAGCACTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | CCTGTGTGTCTGTCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATATCTTGCTGAAAATCTaGTCCACCCGCTGTTCAGGC | + |
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Preference number: 5 (lower is better) Translates to: PVCLSSTILQENGDAAHNILLKI*STRCSG Trigger: GCCTGAACAGCGGGTGGACAAGATTTTCAGCAAGAT...ATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGACAGACACACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | AGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCTCAGTCCAGATCATACATGTaGAAAGCCCAGTTCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: RMVTQPIISYITVGEGSQSRSYM*KAQFSF Trigger: GAAACTGAACTGGGCTTTCAACATGTATGATCTGGA...CTGAGACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACTCCACTCGGGTGATCTaGCCGTCACCGTCCAGATCA | + |
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Preference number: 5 (lower is better) Translates to: SSTILQENGDAAHNKLHYSTRVI*PSPSRS Trigger: TGATCTGGACGGTGACGGCAAGATCACCCGAGTGGA...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | CAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACCGTGGGGGAAGGGTCGTAATCTGGTCATCTTaGTTCTTATCCATCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QENGDAAHNKLHYRGGRVVIWSS*FLSILL Trigger: CAGCAAGATGGATAAGAACAAAGATGACCAGATTAC...GACCCTTCCCCCACGGTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTGAATGGAACATCATCCAGATCATACATGTaGAAAGCCCAGTTCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVCVCSCRLNGTSSRSYM*KAQFSF Trigger: GAAACTGAACTGGGCTTTCAACATGTATGATCTGGA...TGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | CCTGTGTGTCTGTCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATTTGTTCTTATCCATCTaGCTGAAAATCTTGTCCACC | + |
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Preference number: 5 (lower is better) Translates to: PVCLSSTILQENGDAAHNLFLSI*LKILST Trigger: GGTGGACAAGATTTTCAGCAAGATGGATAAGAACAA...ATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGACAGACACACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGCAGACTGAATGGAACATCACTTTTTGCAGCTTCTTaGAATTCATCCAGTGTAATC | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVCVCSCRLNGTSLFAAS*NSSSVI Trigger: GATTACACTGGATGAATTCAAAGAAGCTGCAAAAAG...TGATGTTCCATTCAGTCTGCAGCTACACACACACACACACACACACACACACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | CCTGTGTGTCTGTCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATCTTTTTGCAGCTTCTTaGAATTCATCCAGTGTAATC | + |
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Preference number: 5 (lower is better) Translates to: PVCLSSTILQENGDAAHNLFAAS*NSSSVI Trigger: GATTACACTGGATGAATTCAAAGAAGCTGCAAAAAG...ATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGACAGACACACAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | AGGGTCTCAGTGCTACTAATATTATATAATCAAGGGACACAAGCATTAGCAAAATTAAGCTCATGCTCATaGAACTCAGTGCTCTTCACC | + |
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Preference number: 5 (lower is better) Translates to: RVSVLLILYNQGTQALAKLSSCS*NSVLFT Trigger: GGTGAAGAGCACTGAGTTCAATGAGCATGAGCTTAA...TTTTGCTAATGCTTGTGTCCCTTGATTATATAATATTAGTAGCACTGAGACCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACTTGTTCTTATCCATCTaGCTGAAAATCTTGTCCACC | + |
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Preference number: 5 (lower is better) Translates to: SSTILQENGDAAHNKLHYLFLSI*LKILST Trigger: GGTGGACAAGATTTTCAGCAAGATGGATAAGAACAA...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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| CDS-3UTR CAA 90 bp | TCCAGTACTATTTTACAGGAGAATGGTGACGCAGCCCATAATAAGTTACATTACGTAATCTGGTCATCTTaGTTCTTATCCATCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SSTILQENGDAAHNKLHYVIWSS*FLSILL Trigger: CAGCAAGATGGATAAGAACAAAGATGACCAGATTAC...GTAATGTAACTTATTATGGGCTGCGTCACCATTCTCCTGTAAAATAGTACTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072299.7 ENSMUST00000220506.2 |
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