Pregenerated sensors for VSIG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044206Ensembl transcript IDs: ENSMUST00000050707.3
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCCATGTGCTTGTCTGAGTTTGTAGGACTGAGACTCACGCTGTCTGGAGGCATGAATTTCTCTGCTGTTTaGAGAAGAGTTGTGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: PMCLSEFVGLRLTLSGGMNFSAV*RRVVKA Trigger: GGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATT...CATGCCTCCAGACAGCGTGAGTCTCAGTCCTACAAACTCAGACAAGCACATGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR CAA 90 bp | TTTCTCAATGGCCCCAGAATTGGCAGACTAGATAGATACTTTAGGTaGTCTAAGAAGAAAGGAAGCCAGGGAGAAAGCTATGTTGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: FLNGPRIGRLDRYFR*SKKKGSQGESYVEG Trigger: GCCTTCAACATAGCTTTCTCCCTGGCTTCCTTTCTTCTTAGACAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGGGCCATTGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAAGAGGAGTAATCCTAGACCCATGTGCTTGTCTGAGTTTGTAGGACTGAGAGCTATGGAATTTCTCTaGTGTTTGGAGAAGAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: RKRSNPRPMCLSEFVGLRAMEFL*CLEKSC Trigger: ACAACTCTTCTCCAAACAGCAGAGAAATTCCATAGC...TCTCAGTCCTACAAACTCAGACAAGCACATGGGTCTAGGATTACTCCTCTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR-3UTR TCA 90 bp | CATGATAAAGAACCTCTACTGCTATGGAATTTCTCTGCTGTTTGGAGAAGAGTTGGGAGAAAGCTATGTTaGAGGCAAGTAGTAAATAAG | + |
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Preference number: 2 (lower is better) Translates to: HDKEPLLLWNFSAVWRRVGRKLC*RQVVNK Trigger: CTTATTTACTACTTGCCTTCAACATAGCTTTCTCCC...AACTCTTCTCCAAACAGCAGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR-3UTR CAA 90 bp | CCCATGTGCTTGTCTGAGTTTGTAGGACTGAGACTCACGCTGTCTGGAGGCATGGCCCTAGGAAGAAAATaGTTCTGGGTGAAGCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: PMCLSEFVGLRLTLSGGMALGRK*FWVKPR Trigger: TCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGC...CATGCCTCCAGACAGCGTGAGTCTCAGTCCTACAAACTCAGACAAGCACATGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR CCA 72 bp | AAAGAACCTCTACTGCTATGGAATTTCTCTGCTGTTTaGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTG | + |
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Preference number: 3 (lower is better) Translates to: KEPLLLWNFSAV*RRVVKALGRKL Trigger: CAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTCCATAGCAGTAGAGGTTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| 3UTR-3UTR CAA 90 bp | CATGATAAAGAACCTCTACTGCTATGGAATTTCTCTGCTGTTTGGAGAAGAGTTGATAGATACTTTAGGTaGTCTAAGAAGAAAGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: HDKEPLLLWNFSAVWRRVDRYFR*SKKKGS Trigger: GCTTCCTTTCTTCTTAGACAACCTAAAGTATCTATC...AACTCTTCTCCAAACAGCAGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | CCCATGTGCTTGTCTGAGTTTGTAGGACTGAGACTCACGCTGTCTGGAGGCATGGGATATGGTCTCCAGTaGAGTCACGTAGGAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: PMCLSEFVGLRLTLSGGMGYGLQ*SHVGRW Trigger: CCATCTTCCTACGTGACTCCACTGGAGACCATATCC...CATGCCTCCAGACAGCGTGAGTCTCAGTCCTACAAACTCAGACAAGCACATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | CCCATGTGCTTGTCTGAGTTTGTAGGACTGAGACTCACGCTGTCTGGAGGCATGTTTCCATCAGGAGTCTaGCAGGTGACCTCACATGTA | + |
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Preference number: 4 (lower is better) Translates to: PMCLSEFVGLRLTLSGGMFPSGV*QVTSHV Trigger: TACATGTGAGGTCACCTGGCAGACTCCTGATGGAAA...CATGCCTCCAGACAGCGTGAGTCTCAGTCCTACAAACTCAGACAAGCACATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR TCA 90 bp | ACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTCTTGGCAGGTTCCTCCCTaGACCAGCAATGGTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: THAVWRHDKEPLLLWNFSWQVPP*TSNGLL Trigger: GAGGAGACCATTGCTGGTTCAGGGAGGAACCTGCCA...AGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR TCA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGCAGGAGTCTGCCAGGTaGCCTCACATGTATAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKQESAR*PHMYSD Trigger: ATCACTATACATGTGAGGTCACCTGGCAGACTCCTG...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | CCCATGTGCTTGTCTGAGTTTGTAGGACTGAGACTCACGCTGTCTGGAGGCATGTCAGGGGATCATAGATaGACTGAATCTTCACATCTC | + |
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Preference number: 4 (lower is better) Translates to: PMCLSEFVGLRLTLSGGMSGDHR*TESSHL Trigger: GAGATGTGAAGATTCAGTGCATCTATGATCCCCTGA...CATGCCTCCAGACAGCGTGAGTCTCAGTCCTACAAACTCAGACAAGCACATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGCCTCTGTACTTTGCCTaGTGGATATGGTCTCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKPLYFA*WIWSPV Trigger: CACTGGAGACCATATCCAGCAGGCAAAGTACAGAGG...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | AGACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTTCTCCTGGAACTTTGTaGCTCACTTTCAGGCGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RLTLSGGMIKNLYCYGISSPGTL*LTFRRP Trigger: AGGCCGCCTGAAAGTGAGCCACAAAGTTCCAGGAGA...AGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGGAGGGACACATCTCCTaGAACTTTGTGGCTCACTTT | + |
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Preference number: 4 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKEGHIS*NFVAHF Trigger: AAAGTGAGCCACAAAGTTCCAGGAGATGTGTCCCTC...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | AGACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTAGTTGCTTGTCTTCCTaGCAAACACCCTGCTCACTC | + |
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Preference number: 4 (lower is better) Translates to: RLTLSGGMIKNLYCYGISSCLSS*QTPCSL Trigger: GAGTGAGCAGGGTGTTTGCCAGGAAGACAAGCAACT...AGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | CATGATAAAGAACCTCTACTGCTATGGAATTTCTCTGCTGTTTGGAGAAGAGTTGCGGCCTCTGTACTTTaGCTGCTGGATATGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: HDKEPLLLWNFSAVWRRVAASVL*LLDMVS Trigger: GGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGC...AACTCTTCTCCAAACAGCAGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGTTCCTGTCATCCATCTaGAGGGTATTTATTTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKFLSSI*RVFIWR Trigger: CCTCCAAATAAATACCCTGCAGATGGATGACAGGAA...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | CCAGGATTTCTCAATGGCCCCAGAATTGGCAGACTAGATAGATACTTTAGGTTGTCCCTGAACCAGCAATaGTCTCCTCAAGTTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PGFLNGPRIGRLDRYFRLSLNQQ*SPQVFQ Trigger: CTGGAAAACTTGAGGAGACCATTGCTGGTTCAGGGA...CAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGGGCCATTGAGAAATCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | ACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTCTGTGCAGGGTTGTAGGTaGTTCAGTATTGATTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: THAVWRHDKEPLLLWNFSVQGCR*FSIDSR Trigger: CCTAGAATCAATACTGAAGCACCTACAACCCTGCAC...AGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | GAATTTCTCTGCTGTTTGGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGTACTTTGCCTGCTaGATATGGTCTCCAGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: EFLCCLEKSCEGPRKKIVLYFAC*IWSPVE Trigger: CTCCACTGGAGACCATATCCAGCAGGCAAAGTACAG...AACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | GAATTTCTCTGCTGTTTGGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTTCCTGGCAAACACCCTaGTCACTCCATAGACATACT | + |
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Preference number: 4 (lower is better) Translates to: EFLCCLEKSCEGPRKKIVSWQTP*SLHRHT Trigger: AGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGGA...AACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | CCAGGATTTCTCAATGGCCCCAGAATTGGCAGACTAGATAGATACTTTAGGTTGTCACTAATCAGAGCCTaGGAATCTGGTTCATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: PGFLNGPRIGRLDRYFRLSLIRA*ESGSSV Trigger: AACTGATGAACCAGATTCCCAGGCTCTGATTAGTGA...CAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGGGCCATTGAGAAATCCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | ACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTCTACTCATTATAGTTGTTaGTTCCAAAGAGGAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: THAVWRHDKEPLLLWNFSTHYSC*FQRGVQ Trigger: CTGCACTCCTCTTTGGAAGCAACAACTATAATGAGT...AGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | GAATTTCTCTGCTGTTTGGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTTGCAGGGTATTTATTTaGAGGGACACATCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: EFLCCLEKSCEGPRKKIVCRVFI*RDTSPG Trigger: TCCAGGAGATGTGTCCCTCCAAATAAATACCCTGCA...AACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGAGTATTGATTCTAGGTaGATTATATTTCCGAACACG | + |
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Preference number: 4 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKSIDSR*IIFPNT Trigger: CGTGTTCGGAAATATAATCCACCTAGAATCAATACT...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR GCA 90 bp | CCCAGAATTGGCAGACTAGATAGATACTTTAGGTTGTCTAAGAAGAAAGGAAGCTGGTTTCTTCAGAGTTaGTTGTCTTCCTGGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: PRIGRLDRYFRLSKKKGSWFLQS*LSSWQT Trigger: TGTTTGCCAGGAAGACAAGCAACTCTGAAGAAACCA...GCTTCCTTTCTTCTTAGACAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | AGACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTTTATCTCTTATTACTTaGTTTCCATCAGGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RLTLSGGMIKNLYCYGISLSLIT*FPSGVC Trigger: GCAGACTCCTGATGGAAACCAAGTAATAAGAGATAA...AGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CCA 90 bp | CATGATAAAGAACCTCTACTGCTATGGAATTTCTCTGCTGTTTGGAGAAGAGTTGATCTGATGGTTATTTaGTACTCCTGGCTGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HDKEPLLLWNFSAVWRRVDLMVI*YSWLRQ Trigger: TTGCCTCAGCCAGGAGTACCAAATAACCATCAGATC...AACTCTTCTCCAAACAGCAGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR TCA 90 bp | CCCAGAATTGGCAGACTAGATAGATACTTTAGGTTGTCTAAGAAGAAAGGAAGCGAACACGGAGCTCAATaGTCTTATCTCTTATTACTT | + |
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Preference number: 4 (lower is better) Translates to: PRIGRLDRYFRLSKKKGSEHGAQ*SYLLLL Trigger: AAGTAATAAGAGATAAGATCATTGAGCTCCGTGTTC...GCTTCCTTTCTTCTTAGACAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 90 bp | CCTGGAACTTTGTGGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTaGTGGATATGGTCTCCAGTGGAGTCACGTAGGAAGATGGTGACG | + |
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Preference number: 5 (lower is better) Translates to: PGTLWLTFRRPLYFA*WIWSPVESRRKMVT Trigger: CGTCACCATCTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAAAGTTCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 90 bp | TTGTGGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTGCTGGATATaGTCTCCAGTGGAGTCACGTAGGAAGATGGTGACGGAGTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LWLTFRRPLYFACWI*SPVESRRKMVTESE Trigger: CTCTGACTCCGTCACCATCTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 90 bp | GGAACTTTGTGGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTGCTaGATATGGTCTCCAGTGGAGTCACGTAGGAAGATGGTGACGGAG | + |
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Preference number: 5 (lower is better) Translates to: GTLWLTFRRPLYFAC*IWSPVESRRKMVTE Trigger: CTCCGTCACCATCTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAAAGTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 90 bp | ATCTGCAGGGTATTTATTTGGAGGGACACATCTCCTGGAACTTTGTaGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTGCTGGATATGG | + |
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Preference number: 5 (lower is better) Translates to: ICRVFIWRDTSPGTL*LTFRRPLYFACWIW Trigger: CCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAAAGTTCCAGGAGATGTGTCCCTCCAAATAAATACCCTGCAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | AGACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTGGCGGCCTCTGTACTTaGCCTGCTGGATATGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: RLTLSGGMIKNLYCYGISGGLCT*PAGYGL Trigger: GAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCC...AGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | GAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCTGGGTGAAGCCCAGAAGACATCTCCTGGAACTTaGTGGCTCACTTTCAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: EKSCEGPRKKIVLGEAQKTSPGT*WLTFRR Trigger: CCGCCTGAAAGTGAGCCACAAAGTTCCAGGAGATGT...CTTCTGGGCTTCACCCAGAACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 90 bp | GCCATTTCACCAAAACTTGCCTGTAGCCTCTCAGGGGATCATAGATaGACTGAATCTTCACATCTCCTTTCCAGGTCCCTGTCACACTCT | + |
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Preference number: 5 (lower is better) Translates to: AISPKLACSLSGDHR*TESSHLLSRSLSHS Trigger: AGAGTGTGACAGGGACCTGGAAAGGAGATGTGAAGATTCAGTGCATCTATGATCCCCTGAGAGGCTACAGGCAAGTTTTGGTGAAATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS TCA 90 bp | AAGGGAGATGATGAAGATTATGGCAAAGATTGGCAGGTTCCTCCCTaGACCAGCAATGGTCTCCTCAAGTTTTCCAGTCCCATTAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: KGDDEDYGKDWQVPP*TSNGLLKFSSPISG Trigger: ACCACTAATGGGACTGGAAAACTTGAGGAGACCATTGCTGGTTCAGGGAGGAACCTGCCAATCTTTGCCATAATCTTCATCATCTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | GAATTTCTCTGCTGTTTGGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTCCATTTCACCAAAACTaGCCTGTAGCCTCTCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: EFLCCLEKSCEGPRKKIVPFHQN*PVASQG Trigger: CCCCTGAGAGGCTACAGGCAAGTTTTGGTGAAATGG...AACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | ACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTCTAGATTATGGCAAAGATaGGCAGGTTCCTCCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: THAVWRHDKEPLLLWNFSRLWQR*AGSSLN Trigger: GTTCAGGGAGGAACCTGCCAATCTTTGCCATAATCT...AGAGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | CCAGGATTTCTCAATGGCCCCAGAATTGGCAGACTAGATAGATACTTTAGGTTGTTTCTTCAGAGTTGCTaGTCTTCCTGGCAAACACCC | + |
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Preference number: 5 (lower is better) Translates to: PGFLNGPRIGRLDRYFRLFLQSC*SSWQTP Trigger: GGGTGTTTGCCAGGAAGACAAGCAACTCTGAAGAAA...CAACCTAAAGTATCTATCTAGTCTGCCAATTCTGGGGCCATTGAGAAATCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | GAATTTCTCTGCTGTTTGGAGAAGAGTTGTGAAGGCCCTAGGAAGAAAATTGTTGTGGTTTCTTCAGAGTaGCTTGTCTTCCTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: EFLCCLEKSCEGPRKKIVVVSSE*LVFLAN Trigger: GTTTGCCAGGAAGACAAGCAACTCTGAAGAAACCAC...AACAATTTTCTTCCTAGGGCCTTCACAACTCTTCTCCAAACAGCAGAGAAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 90 bp | ACTCATTATAGTTGTTGCTTCCAAAGAGGAGTGCAGGGTTGTAGGTaGTTCAGTATTGATTCTAGGTGGATTATATTTCCGAACACGGAG | + |
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Preference number: 5 (lower is better) Translates to: THYSCCFQRGVQGCR*FSIDSRWIIFPNTE Trigger: CTCCGTGTTCGGAAATATAATCCACCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTGGAAGCAACAACTATAATGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | AGACTCACGCTGTCTGGAGGCATGATAAAGAACCTCTACTGCTATGGAATTTCTCTTATCTCTTATTACTaGGTTTCCATCAGGAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RLTLSGGMIKNLYCYGISLISYY*VSIRSL Trigger: CAGACTCCTGATGGAAACCAAGTAATAAGAGATAAG...AGAAATTCCATAGCAGTAGAGGTTCTTTATCATGCCTCCAGACAGCGTGAGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 90 bp | CAAAGAGGAGTGCAGGGTTGTAGGTGCTTCAGTATTGATTCTAGGTaGATTATATTTCCGAACACGGAGCTCAATGATCTTATCTCTTAT | + |
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Preference number: 5 (lower is better) Translates to: QRGVQGCRCFSIDSR*IIFPNTELNDLISY Trigger: ATAAGAGATAAGATCATTGAGCTCCGTGTTCGGAAATATAATCCACCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS-3UTR CAA 90 bp | AGAAAGAGGAGTAATCCTAGACCCATGTGCTTGTCTGAGTTTGTAGGACTGAGAGTAGGTGCTTCAGTATaGATTCTAGGTGGATTATAT | + |
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Preference number: 5 (lower is better) Translates to: RKRSNPRPMCLSEFVGLRVGASV*ILGGLY Trigger: ATATAATCCACCTAGAATCAATACTGAAGCACCTAC...TCTCAGTCCTACAAACTCAGACAAGCACATGGGTCTAGGATTACTCCTCTTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 72 bp | TTGTGGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTaGTGGATATGGTCTCCAGTGGAGTCACGTAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LWLTFRRPLYFA*WIWSPVESRRK Trigger: CTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 72 bp | ACTTTCAGGCGGCCTCTGTACTTTGCCTGCTGGATATaGTCTCCAGTGGAGTCACGTAGGAAGATGGTGACG | + |
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Preference number: 6 (lower is better) Translates to: TFRRPLYFACWI*SPVESRRKMVT Trigger: CGTCACCATCTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 72 bp | TGGCTCACTTTCAGGCGGCCTCTGTACTTTGCCTGCTaGATATGGTCTCCAGTGGAGTCACGTAGGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: WLTFRRPLYFAC*IWSPVESRRKM Trigger: CATCTTCCTACGTGACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS TCA 72 bp | GGATATGGTCTCCAGTGGAGTCACGTAGGAAGATGGTaGCGGAGTCAGAGCCGTGTCTTACCAGCCATTTCA | + |
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Preference number: 6 (lower is better) Translates to: GYGLQWSHVGRW*RSQSRVLPAIS Trigger: TGAAATGGCTGGTAAGACACGGCTCTGACTCCGTCACCATCTTCCTACGTGACTCCACTGGAGACCATATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | GTCAGAGCCGTGTCTTACCAGCCATTTCACCAAAACTaGCCTGTAGCCTCTCAGGGGATCATAGATGCACTG | + |
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Preference number: 6 (lower is better) Translates to: VRAVSYQPFHQN*PVASQGIIDAL Trigger: CAGTGCATCTATGATCCCCTGAGAGGCTACAGGCAAGTTTTGGTGAAATGGCTGGTAAGACACGGCTCTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | AGGGTATTTATTTGGAGGGACACATCTCCTGGAACTTaGTGGCTCACTTTCAGGCGGCCTCTGTACTTTGCC | + |
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Preference number: 6 (lower is better) Translates to: RVFIWRDTSPGT*WLTFRRPLYFA Trigger: GGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAAAGTTCCAGGAGATGTGTCCCTCCAAATAAATACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS TCA 72 bp | GATGAAGATTATGGCAAAGATTGGCAGGTTCCTCCCTaGACCAGCAATGGTCTCCTCAAGTTTTCCAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: DEDYGKDWQVPP*TSNGLLKFSSP Trigger: GGGACTGGAAAACTTGAGGAGACCATTGCTGGTTCAGGGAGGAACCTGCCAATCTTTGCCATAATCTTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | CCTGGCAAACACCCTGCTCACTCCATAGACATACTCTaGTTGGAATGTCCTGCAGCGGAACAAGATATAAGG | + |
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Preference number: 6 (lower is better) Translates to: PGKHPAHSIDIL*LECPAAEQDIR Trigger: CCTTATATCTTGTTCCGCTGCAGGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 90 bp | TGTCTTCCTGGCAAACACCCTGCTCACTCCATAGACATACTCTTGTaGGAATGTCCTGCAGCGGAACAAGATATAAGGTATGGTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: CLPGKHPAHSIDILL*ECPAAEQDIRYGDS Trigger: GCTGTCACCATACCTTATATCTTGTTCCGCTGCAGGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGGAAGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 90 bp | GCTTGTCTTCCTGGCAAACACCCTGCTCACTCCATAGACATACTCTaGTTGGAATGTCCTGCAGCGGAACAAGATATAAGGTATGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: ACLPGKHPAHSIDIL*LECPAAEQDIRYGD Trigger: GTCACCATACCTTATATCTTGTTCCGCTGCAGGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGGAAGACAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 90 bp | CTCACATGTATAGTGATTCCTGTCATCCATCTGCAGGGTATTTATTaGGAGGGACACATCTCCTGGAACTTTGTGGCTCACTTTCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: LTCIVIPVIHLQGIY*EGHISWNFVAHFQA Trigger: CGCCTGAAAGTGAGCCACAAAGTTCCAGGAGATGTGTCCCTCCAAATAAATACCCTGCAGATGGATGACAGGAATCACTATACATGTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CCA 72 bp | ATCATCAGAGTAGTCACTAATCAGAGCCTGGGAATCTaGTTCATCAGTTGCGATGGTAGTCACCCTTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: IIRVVTNQSLGI*FISCDGSHPCG Trigger: ACCACAAGGGTGACTACCATCGCAACTGATGAACCAGATTCCCAGGCTCTGATTAGTGACTACTCTGATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 72 bp | TTTCTTCAGAGTTGCTTGTCTTCCTGGCAAACACCCTaGTCACTCCATAGACATACTCTTGTTGGAATGTCC | + |
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Preference number: 6 (lower is better) Translates to: FLQSCLSSWQTP*SLHRHTLVGMS Trigger: GGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGGAAGACAAGCAACTCTGAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | ATAGTGATTCCTGTCATCCATCTGCAGGGTATTTATTaGGAGGGACACATCTCCTGGAACTTTGTGGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: IVIPVIHLQGIY*EGHISWNFVAH Trigger: GTGAGCCACAAAGTTCCAGGAGATGTGTCCCTCCAAATAAATACCCTGCAGATGGATGACAGGAATCACTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | TCCAAAGAGGAGTGCAGGGTTGTAGGTGCTTCAGTATaGATTCTAGGTGGATTATATTTCCGAACACGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SKEECRVVGASV*ILGGLYFRTRS Trigger: GCTCCGTGTTCGGAAATATAATCCACCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 72 bp | GGCAAACACCCTGCTCACTCCATAGACATACTCTTGTaGGAATGTCCTGCAGCGGAACAAGATATAAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: GKHPAHSIDILL*ECPAAEQDIRY Trigger: ATACCTTATATCTTGTTCCGCTGCAGGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 90 bp | GTTGTTGCTTCCAAAGAGGAGTGCAGGGTTGTAGGTGCTTCAGTATaGATTCTAGGTGGATTATATTTCCGAACACGGAGCTCAATGATC | + |
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Preference number: 6 (lower is better) Translates to: VVASKEECRVVGASV*ILGGLYFRTRSSMI Trigger: GATCATTGAGCTCCGTGTTCGGAAATATAATCCACCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTGGAAGCAACAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS TCA 72 bp | CTCTTATTACTTGGTTTCCATCAGGAGTCTGCCAGGTaGCCTCACATGTATAGTGATTCCTGTCATCCATCT | + |
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Preference number: 6 (lower is better) Translates to: LLLLGFHQESAR*PHMYSDSCHPS Trigger: AGATGGATGACAGGAATCACTATACATGTGAGGTCACCTGGCAGACTCCTGATGGAAACCAAGTAATAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS GCA 72 bp | AGTTGTTGCTTCCAAAGAGGAGTGCAGGGTTGTAGGTaGTTCAGTATTGATTCTAGGTGGATTATATTTCCG | + |
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Preference number: 6 (lower is better) Translates to: SCCFQRGVQGCR*FSIDSRWIIFP Trigger: CGGAAATATAATCCACCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTGGAAGCAACAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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| CDS CAA 90 bp | ATTATATTTCCGAACACGGAGCTCAATGATCTTATCTCTTATTACTaGGTTTCCATCAGGAGTCTGCCAGGTGACCTCACATGTATAGTG | + |
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Preference number: 6 (lower is better) Translates to: IIFPNTELNDLISYY*VSIRSLPGDLTCIV Trigger: CACTATACATGTGAGGTCACCTGGCAGACTCCTGATGGAAACCAAGTAATAAGAGATAAGATCATTGAGCTCCGTGTTCGGAAATATAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050707.3 |
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