Pregenerated sensors for VSIG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001943Ensembl transcript IDs: ENSMUST00000002008.7, ENSMUST00000213699.2, ENSMUST00000215271.2, ENSMUST00000215957.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCATCTCTCCTTTCTGTGCCAAGGCTAAACAGGAACTCCCTCCCCTaGAAGGCTTTTAATGACAACAGCTTGAAGTCTGAAGACATCCAC | + |
|
Preference number: 1 (lower is better) Translates to: PSLLSVPRLNRNSLP*KAFNDNSLKSEDIH Trigger: GTGGATGTCTTCAGACTTCAAGCTGTTGTCATTAAAAGCCTTTCAGGGGAGGGAGTTCCTGTTTAGCCTTGGCACAGAAAGGAGAGATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR-3UTR TCA 90 bp | ACGCACAACACACACACACACATACCACACACACGTGACAGTCTGACAAACAGCAGGAACTCCCTCCCCTaGAAGGCTTTTAATGACAAC | + |
|
Preference number: 2 (lower is better) Translates to: THNTHTHIPHTRDSLTNSRNSLP*KAFNDN Trigger: GTTGTCATTAAAAGCCTTTCAGGGGAGGGAGTTCCT...GCTGTTTGTCAGACTGTCACGTGTGTGTGGTATGTGTGTGTGTGTGTTGTGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR-3UTR TCA 90 bp | AATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCCACCTTCCCCAATTACCCAACAGCTTGAAGTCTaGAGACATCCACTTGGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: NLKTNETPGIHPPPSPITQQLEV*RHPLGA Trigger: GGCTCCAAGTGGATGTCTTCAGACTTCAAGCTGTTG...GGTAATTGGGGAAGGTGGAGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR-3UTR CCA 90 bp | GTCCCATCCAGAATAACTAATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCTGAAGACATCCACTTaGAGCCTGAGCCCGATCCCT | + |
|
Preference number: 2 (lower is better) Translates to: VPSRITNLKTNETPGIHPLKTST*SLSPIP Trigger: AGGGATCGGGCTCAGGCTCCAAGTGGATGTCTTCAG...AGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATTAGTTATTCTGGATGGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR-3UTR TCA 90 bp | AGAATAACTAATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCCACCTTCCATCCCTTCCAGTTTATaGATCCATCTCTCCTTTCTG | + |
|
Preference number: 2 (lower is better) Translates to: RITNLKTNETPGIHPPPSIPSSL*IHLSFL Trigger: CAGAAAGGAGAGATGGATTCATAAACTGGAAGGGAT...GGAAGGTGGAGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATTAGTTATTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR TCA 72 bp | ACTCCCTCCCCTGAAAGGCTTTTAATGACAACAGCTTaGAGTCTGAAGACATCCACTTGGAGCCTGAGCCCG | + |
|
Preference number: 3 (lower is better) Translates to: TPSPERLLMTTA*SLKTSTWSLSP Trigger: CGGGCTCAGGCTCCAAGTGGATGTCTTCAGACTTCAAGCTGTTGTCATTAAAAGCCTTTCAGGGGAGGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR TCA 72 bp | CTTTCTGTGCCAAGGCTAAACAGGAACTCCCTCCCCTaGAAGGCTTTTAATGACAACAGCTTGAAGTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: LSVPRLNRNSLP*KAFNDNSLKSE Trigger: TTCAGACTTCAAGCTGTTGTCATTAAAAGCCTTTCAGGGGAGGGAGTTCCTGTTTAGCCTTGGCACAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCCCATCCAGAATAACTAATCTTAAGACAAATGAAACTCCTGGTATCCACCCTTTTAATGACAACAGCTaGAAGTCTGAAGACATCCAC | + |
|
Preference number: 3 (lower is better) Translates to: VPSRITNLKTNETPGIHPFNDNS*KSEDIH Trigger: GTGGATGTCTTCAGACTTCAAGCTGTTGTCATTAAA...AGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATTAGTTATTCTGGATGGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS-3UTR CCA 90 bp | AGTCTGAAGACATCCACTTGGAGCCTGAGCCCGATCCCTTTCATTTCCCTCTGCTGCCCATCTGGTTGCTaGCCACACATCGGTAGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLKTSTWSLSPIPFISLCCPSGC*PHIGRC Trigger: GCACCTACCGATGTGTGGCCAGCAACCAGATGGGCA...GCAGAGGGAAATGAAAGGGATCGGGCTCAGGCTCCAAGTGGATGTCTTCAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS-3UTR GCA 90 bp | ACGCACAACACACACACACACATACCACACACACGTGACAGTCTGACAAACAGCGCTCACAGGAGGCACTaGCCATCTGGTTGCTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: THNTHTHIPHTRDSLTNSAHRRH*PSGCWP Trigger: TGGCCAGCAACCAGATGGGCAGTGCCTCCTGTGAGC...GCTGTTTGTCAGACTGTCACGTGTGTGTGGTATGTGTGTGTGTGTGTTGTGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS-3UTR GCA 90 bp | ACGCACAACACACACACACACATACCACACACACGTGACAGTCTGACAAACAGCCACTGCCCATCTGGTTaGTGGCCACACATCGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: THNTHTHIPHTRDSLTNSHCPSG*WPHIGR Trigger: CCTACCGATGTGTGGCCAGCAACCAGATGGGCAGTG...GCTGTTTGTCAGACTGTCACGTGTGTGTGGTATGTGTGTGTGTGTGTTGTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS-3UTR GCA 90 bp | AGAATAACTAATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCCACCTTCCCCACACATCGGTAGGTaGCAGAGGAGGTCAGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RITNLKTNETPGIHPPPSPHIGR*QRRSGR Trigger: TCTCCCTGACCTCCTCTGGCACCTACCGATGTGTGG...GGAAGGTGGAGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATTAGTTATTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| 3UTR CAA 72 bp | TTTAATGACAACAGCTTGAAGTCTGAAGACATCCACTaGGAGCCTGAGCCCGATCCCTTTCATTTCCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: FNDNSLKSEDIH*EPEPDPFHFPL Trigger: CAGAGGGAAATGAAAGGGATCGGGCTCAGGCTCCAAGTGGATGTCTTCAGACTTCAAGCTGTTGTCATTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS-3UTR TCA 90 bp | AGAATAACTAATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCCACCTTCCTACTCGGCCTTCAGATaGGTCAGTCACGGAGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: RITNLKTNETPGIHPPPSYSAFR*VSHGEV Trigger: AACCTCTCCGTGACTGACTCATCTGAAGGCCGAGTA...GGAAGGTGGAGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATTAGTTATTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS GCA 90 bp | CAGTCACGGAGAGGTTCAGCTCACAGGAGGCACTGCCCATCTGGTTaGTGGCCACACATCGGTAGGTGCCAGAGGAGGTCAGGGAGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: QSRRGSAHRRHCPSG*WPHIGRCQRRSGRD Trigger: ATCTCTCCCTGACCTCCTCTGGCACCTACCGATGTGTGGCCAGCAACCAGATGGGCAGTGCCTCCTGTGAGCTGAACCTCTCCGTGACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 |
||
| CDS CCA 90 bp | AGGGCGGAGGTCAGTCAGTTTCAGGGTAGCCAGTCCTCCTGTGGGTaGATCGTGGAGAAGGATGGCCCGATCTGCTTTAGAGCCAGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: RAEVSQFQGSQSSCG*IVEKDGPICFRASG Trigger: CCCACTGGCTCTAAAGCAGATCGGGCCATCCTTCTCCACGATCCACCCACAGGAGGACTGGCTACCCTGAAACTGACTGACCTCCGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS GCA 90 bp | TGTAGGAGAAGATCCGAGACGTTCCCAGTTGTACACTGGCTTGGGTaGTCCCTCAGAGGAGCGGCATCCCAGTGCAGCAGAACCTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: CRRRSETFPVVHWLG*SLRGAASQCSRTSH Trigger: GTGGGAGGTTCTGCTGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCCTACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS GCA 90 bp | CTTCAGATGAGTCAGTCACGGAGAGGTTCAGCTCACAGGAGGCACTaGCCATCTGGTTGCTGGCCACACATCGGTAGGTGCCAGAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LQMSQSRRGSAHRRH*PSGCWPHIGRCQRR Trigger: CCTCCTCTGGCACCTACCGATGTGTGGCCAGCAACCAGATGGGCAGTGCCTCCTGTGAGCTGAACCTCTCCGTGACTGACTCATCTGAAG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 |
||
| CDS CCA 90 bp | AGGAGGAGGTGTAGGAGAAGATCCGAGACGTTCCCAGTTGTACACTaGCTTGGGTGCTCCCTCAGAGGAGCGGCATCCCAGTGCAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: RRRCRRRSETFPVVH*LGCSLRGAASQCSR Trigger: TCTGCTGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCCTACACCTCCTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS CCA 90 bp | TGGAGAAGGATGGCCCGATCTGCTTTAGAGCCAGTGGGATACAGGTaGCCATTGGTGAAGTACAGAACGGGCACGGACGCAGAGATGGGC | + |
|
Preference number: 5 (lower is better) Translates to: WRRMARSALEPVGYR*PLVKYRTGTDAEMG Trigger: GCCCATCTCTGCGTCCGTGCCCGTTCTGTACTTCACCAATGGCCACCTGTATCCCACTGGCTCTAAAGCAGATCGGGCCATCCTTCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS GCA 90 bp | AGCTCCACTCCAAGGCAAAGTTGTCGCCCACCGATGTTTTGTAACTaGAGCTCAGCTCGGCCGTCTTACCCTTTGGCACGCTCAGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SSTPRQSCRPPMFCN*SSARPSYPLARSVA Trigger: AGCCACTGAGCGTGCCAAAGGGTAAGACGGCCGAGCTGAGCTGCAGTTACAAAACATCGGTGGGCGACAACTTTGCCTTGGAGTGGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS CCA 90 bp | AGGTCAGTCAGTTTCAGGGTAGCCAGTCCTCCTGTGGGTGGATCGTaGAGAAGGATGGCCCGATCTGCTTTAGAGCCAGTGGGATACAGG | + |
|
Preference number: 5 (lower is better) Translates to: RSVSFRVASPPVGGS*RRMARSALEPVGYR Trigger: CCTGTATCCCACTGGCTCTAAAGCAGATCGGGCCATCCTTCTCCACGATCCACCCACAGGAGGACTGGCTACCCTGAAACTGACTGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS TCA 90 bp | CTTTTTCCTCTCTTTCTGGAACCTGATGAGGCAGAATGCGGCGACTaGCAGGAGCAGCACTCCCAGCAGCACCCCAATAAGAGTCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LFPLFLEPDEAECGD*QEQHSQQHPNKSPS Trigger: GCTGGGACTCTTATTGGGGTGCTGCTGGGAGTGCTGCTCCTGTCAGTCGCCGCATTCTGCCTCATCAGGTTCCAGAAAGAGAGGAAAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 ENSMUST00000215957.2 |
||
| CDS TCA 90 bp | GTCATGGTGCTGGCACATGGAGACTTCTCCAGGAGCTCTTTGCTATaGTCGGCTCTCATAGAAGCTTGCTCAAAAACCCCAGGAGCGGTT | + |
|
Preference number: 5 (lower is better) Translates to: VMVLAHGDFSRSSLL*SALIEACSKTPGAV Trigger: AACCGCTCCTGGGGTTTTTGAGCAAGCTTCTATGAGAGCCGATCATAGCAAAGAGCTCCTGGAGAAGTCTCCATGTGCCAGCACCATGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 ENSMUST00000215957.2 |
||
| CDS-3UTR CAA 90 bp | AATCTTAAGACAAATGAAACTCCTGGTATCCACCCTCCACCTTCCCCAATTACCGAGGTCAGGGAGAGATaGGTAAGAATGAGCTGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: NLKTNETPGIHPPPSPITEVRER*VRMSWP Trigger: CGGCCAGCTCATTCTTACCAATCTCTCCCTGACCTC...GGTAATTGGGGAAGGTGGAGGGTGGATACCAGGAGTTTCATTTGTCTTAAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213699.2 |
||
| CDS GCA 72 bp | GCCAGTCCTCCGCTCAGGCACACGAAGCCCAGCAAGTaGCCGCAAAGGAAAGCCCCCACCAGGGGCCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: ASPPLRHTKPSK*PQRKAPTRGQA Trigger: GGCCTGGCCCCTGGTGGGGGCTTTCCTTTGCGGGCACTTGCTGGGCTTCGTGTGCCTGAGCGGAGGACTGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215271.2 |
||
| CDS GCA 72 bp | ACAGCTAGCCCGCTCAGGCACACGAAGCCCAGCAAGTaGCCGCAAAGGAAAGCCCCCACCAGGGGCCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: TASPLRHTKPSK*PQRKAPTRGQA Trigger: GGCCTGGCCCCTGGTGGGGGCTTTCCTTTGCGGGCACTTGCTGGGCTTCGTGTGCCTGAGCGGGCTAGCTGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS GCA 72 bp | TGGCTTGGGTGCTCCCTCAGAGGAGCGGCATCCCAGTaGAGCAGAACCTCCCACAGAGGTTTGCCCACTCTG | + |
|
Preference number: 6 (lower is better) Translates to: WLGCSLRGAASQ*SRTSHRGLPTL Trigger: CAGAGTGGGCAAACCTCTGTGGGAGGTTCTGCTGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS GCA 72 bp | AGTCAGTCACGGAGAGGTTCAGCTCACAGGAGGCACTaGCCATCTGGTTGCTGGCCACACATCGGTAGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: SQSRRGSAHRRH*PSGCWPHIGRC Trigger: GCACCTACCGATGTGTGGCCAGCAACCAGATGGGCAGTGCCTCCTGTGAGCTGAACCTCTCCGTGACTGACT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 |
||
| CDS CCA 72 bp | GAGAAGATCCGAGACGTTCCCAGTTGTACACTGGCTTaGGTGCTCCCTCAGAGGAGCGGCATCCCAGTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: EKIRDVPSCTLA*VLPQRSGIPVQ Trigger: CTGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS CAA 72 bp | GGAGAAGATCCGAGACGTTCCCAGTTGTACACTGGCTaGGGTGCTCCCTCAGAGGAGCGGCATCCCAGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: GEDPRRSQLYTG*GAPSEERHPSA Trigger: TGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS CAA 90 bp | GGAGGTGTAGGAGAAGATCCGAGACGTTCCCAGTTGTACACTGGCTaGGGTGCTCCCTCAGAGGAGCGGCATCCCAGTGCAGCAGAACCT | + |
|
Preference number: 6 (lower is better) Translates to: GGVGEDPRRSQLYTG*GAPSEERHPSAAEP Trigger: AGGTTCTGCTGCACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCCTACACCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS CCA 72 bp | TGTAGGAGAAGATCCGAGACGTTCCCAGTTGTACACTaGCTTGGGTGCTCCCTCAGAGGAGCGGCATCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: CRRRSETFPVVH*LGCSLRGAASQ Trigger: CTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS TCA 72 bp | CACCCCAATAAGAGTCCCAGCTACTCGGCCTTCAGATaGGTCAGTCACGGAGAGGTTCAGCTCACAGGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: HPNKSPSYSAFR*VSHGEVQLTGG Trigger: GCCTCCTGTGAGCTGAACCTCTCCGTGACTGACTCATCTGAAGGCCGAGTAGCTGGGACTCTTATTGGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 |
||
| CDS TCA 72 bp | CTCTTTCTGGAACCTGATGAGGCAGAATGCGGCGACTaGCAGGAGCAGCACTCCCAGCAGCACCCCAATAAG | + |
|
Preference number: 6 (lower is better) Translates to: LFLEPDEAECGD*QEQHSQQHPNK Trigger: CTTATTGGGGTGCTGCTGGGAGTGCTGCTCCTGTCAGTCGCCGCATTCTGCCTCATCAGGTTCCAGAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002008.7 ENSMUST00000213699.2 ENSMUST00000215271.2 ENSMUST00000215957.2 |
||
| CDS CCA 72 bp | ATGGCCCGATCTGCTTTAGAGCCAGTGGGATACAGGTaGCCATTGGTGAAGTACAGAACGGGCACGGACGCA | + |
|
Preference number: 6 (lower is better) Translates to: MARSALEPVGYR*PLVKYRTGTDA Trigger: TGCGTCCGTGCCCGTTCTGTACTTCACCAATGGCCACCTGTATCCCACTGGCTCTAAAGCAGATCGGGCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215957.2 |
||
| CDS CAA 72 bp | CAGGAGCTCTTTGCTATGATCGGCTCTCATAGAAGCTaGCTCAAAAACCCCAGGAGCGGTTGCATCCTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: QELFAMIGSHRS*LKNPRSGCILP Trigger: CGGGAGGATGCAACCGCTCCTGGGGTTTTTGAGCAAGCTTCTATGAGAGCCGATCATAGCAAAGAGCTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 ENSMUST00000215957.2 |
||
| CDS CAA 72 bp | GAGATTGGTAAGAATGAGCTGGCCGGACACTTCATCTaGAACCATGCTACCAGGAGGAGGTGTAGGAGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: EIGKNELAGHFI*NHATRRRCRRR Trigger: TCTTCTCCTACACCTCCTCCTGGTAGCATGGTTCAAGATGAAGTGTCCGGCCAGCTCATTCTTACCAATCTC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||
| CDS TCA 72 bp | AGATTGGTAAGAATGAGCTGGCCGGACACTTCATCTTaGACCATGCTACCAGGAGGAGGTGTAGGAGAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: RLVRMSWPDTSS*TMLPGGGVGED Trigger: ATCTTCTCCTACACCTCCTCCTGGTAGCATGGTTCAAGATGAAGTGTCCGGCCAGCTCATTCTTACCAATCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002008.7 ENSMUST00000215271.2 |
||