Pregenerated sensors for VSIG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031430Ensembl transcript IDs: ENSMUST00000033806.5
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTCCAGGGCACAATGGGATTATAAAAGGGAACAAAGAAGCACTTTaGGATGGTGGAAACCATCTACTTCTACATAGGTATGGTGGTTTC | + |
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Preference number: 1 (lower is better) Translates to: GPGHNGIIKGNKEAL*DGGNHLLLHRYGGF Trigger: GAAACCACCATACCTATGTAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAATCCCATTGTGCCCTGGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR CCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAGATGGACGGACAAACTaGGGGCTGGTTAAGTCAACC | + |
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Preference number: 2 (lower is better) Translates to: IIKGNKEALWDGGNHLLLDGRTN*GLVKST Trigger: GGTTGACTTAACCAGCCCCCAGTTTGTCCGTCCATC...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR TCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAGTCAAAGGTTTACTCTaGATCGCCTCCAATACCAAC | + |
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Preference number: 2 (lower is better) Translates to: IIKGNKEALWDGGNHLLLVKGLL*IASNTN Trigger: GTTGGTATTGGAGGCGATTCAGAGTAAACCTTTGAC...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR CCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAATAAACCACGTGTCTTaGCCTTGGCCTTTGTTATGT | + |
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Preference number: 2 (lower is better) Translates to: IIKGNKEALWDGGNHLLLINHVS*PWPLLC Trigger: ACATAACAAAGGCCAAGGCCAAGACACGTGGTTTAT...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR CCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTAAAACCATCCCAGTCTaGTGCCAAAACCACATAGCA | + |
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Preference number: 2 (lower is better) Translates to: MVVSWVYATVKTHQIIQFKTIPV*CQNHIA Trigger: TGCTATGTGGTTTTGGCACCAGACTGGGATGGTTTT...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR TCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTAGAGTGGGATATCAGTaGTATATGACCATGAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: MVVSWVYATVKTHQIIQFRVGYQ*YMTMKK Trigger: CTTTTTCATGGTCATATATCACTGATATCCCACTCT...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR GCA 72 bp | ACCAAAGTGTTCATCTGGAAAACCATCCCAGTCTGGTaGCAAAACCACATAGCATCCGACAGTAATAACATC | + |
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Preference number: 3 (lower is better) Translates to: TKVFIWKTIPVW*QNHIASDSNNI Trigger: GATGTTATTACTGTCGGATGCTATGTGGTTTTGGCACCAGACTGGGATGGTTTTCCAGATGAACACTTTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR-3UTR CAA 90 bp | ATCGCCTCCAATACCAACACTTTATGCTCACCAAAGAAAAGGTTTATTCTAAATAATAAACCACGTGTCTaGGCCTTGGCCTTTGTTATG | + |
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Preference number: 3 (lower is better) Translates to: IASNTNTLCSPKKRFILNNKPRV*ALAFVM Trigger: CATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT...ATTTAGAATAAACCTTTTCTTTGGTGAGCATAAAGTGTTGGTATTGGAGGCGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR CCA 72 bp | CACAATGGGATTATAAAAGGGAACAAAGAAGCACTTTaGGATGGTGGAAACCATCTACTTCTACATAGGTAT | + |
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Preference number: 3 (lower is better) Translates to: HNGIIKGNKEAL*DGGNHLLLHRY Trigger: ATACCTATGTAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAATCCCATTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR CCA 72 bp | GAAACCATCTACTTCTACATAGGTATGGTGGTTTCATaGGTGTATGCAACTGTCAAAACTCATCAAATTATA | + |
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Preference number: 3 (lower is better) Translates to: ETIYFYIGMVVS*VYATVKTHQII Trigger: TATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCATACCTATGTAGAAGTAGATGGTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| 3UTR CCA 72 bp | ATTCTTCCAAGTAAATTAGAAATAAACCACGTGTCTTaGCCTTGGCCTTTGTTATGTTACATATTAGTACAG | + |
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Preference number: 3 (lower is better) Translates to: ILPSKLEINHVS*PWPLLCYILVQ Trigger: CTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATTTCTAATTTACTTGGAAGAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | GGCCAGTTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCAGCTCTGGGTGTGGTTaGATCTCTGCCTCAGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: GQFRLSKVDQSVHLENHPSSGCG*ISASGA Trigger: AGCACCTGAGGCAGAGATTCAACCACACCCAGAGCT...GGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAACTGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTACTCCGGGTCCAGCTCTaGGTGTGGTTGAATCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: IIKGNKEALWDGGNHLLLLRVQL*VWLNLC Trigger: GCAGAGATTCAACCACACCCAGAGCTGGACCCGGAG...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTATCACTTGCACCATACTaGCCTGACCTGCAAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: IIKGNKEALWDGGNHLLLSLAPY*PDLQGS Trigger: ACTGCCTTGCAGGTCAGGTCAGTATGGTGCAAGTGA...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | GGCCAGTTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCCCACTGTCTGCTGGCTaGATATGCAATATGGTGATA | + |
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Preference number: 4 (lower is better) Translates to: GQFRLSKVDQSVHLENHPPLSAG*ICNMVI Trigger: TATCACCATATTGCATATGCAGCCAGCAGACAGTGG...GGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAACTGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTGTGGCCAGCATGGATaGAAGATGGCAGAGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVCGQHG*KMAEFL Trigger: AAGGAACTCTGCCATCTTCCATCCATGCTGGCCACA...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTTGCACCATACTGACCTaGCCTGCAAGGCAGTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFCTILT*PARQFK Trigger: CTTAAACTGCCTTGCAGGTCAGGTCAGTATGGTGCA...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | TTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTAAGTAAGCCCTATGAATTGCCCAATAGCTaGAGCCTGTCCACCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: LALAFVMLHISTVLSKPYELPNS*SLSTFR Trigger: TCTGAAGGTGGACAGGCTTCAGCTATTGGGCAATTC...ATAGGGCTTACTTAAAACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTACTCCAGTGGCCGTGTTaGAACTTTCTTTTACTGGCA | + |
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Preference number: 4 (lower is better) Translates to: IIKGNKEALWDGGNHLLLLQWPC*NFLLLA Trigger: TGCCAGTAAAAGAAAGTTTCAACACGGCCACTGGAG...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTGGAGGCCTTGGTTTTTaGCCACAAAATCTGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVGGLGF*PQNLED Trigger: ATCCTCCAGATTTTGTGGGCAAAAACCAAGGCCTCC...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTCTGGTCTTCCTTGGATaGTACAAAAGGGCTTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVLVFLG*YKRAWK Trigger: CTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAG...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAGCTTCTGGTCTTCCTTaGATGGTACAAAAGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: IIKGNKEALWDGGNHLLLASGLP*MVQKGL Trigger: CAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGC...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATCGCCTCCAATACCAACACTTTATGCTCACCAAAGAAAAGGTTTATTCTAAATGTGTTGTGGCCAGCATaGATGGAAGATGGCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: IASNTNTLCSPKKRFILNVLWPA*MEDGRV Trigger: AACTCTGCCATCTTCCATCCATGCTGGCCACAACAC...ATTTAGAATAAACCTTTTCTTTGGTGAGCATAAAGTGTTGGTATTGGAGGCGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATCGCCTCCAATACCAACACTTTATGCTCACCAAAGAAAAGGTTTATTCTAAATGTAGGTTCGGTGTTGTaGCCAGCATGGATGGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: IASNTNTLCSPKKRFILNVGSVL*PAWMED Trigger: ATCTTCCATCCATGCTGGCCACAACACCGAACCTAC...ATTTAGAATAAACCTTTTCTTTGGTGAGCATAAAGTGTTGGTATTGGAGGCGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | TTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCAGTCTGACGTCAAGGAGGCCTTaGTTTTTGCCCACAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: FRLSKVDQSVHLENHPSLTSRRP*FLPTKS Trigger: AGATTTTGTGGGCAAAAACCAAGGCCTCCTTGACGT...CAGACTGGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | TTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTAAGTAAGCCCTATGACAAGGAAATAGGATaGCCTGCTTCTGGTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LALAFVMLHISTVLSKPYDKEIG*PASGLP Trigger: AGGAAGACCAGAAGCAGGCCATCCTATTTCCTTGTC...ATAGGGCTTACTTAAAACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTATTATTACTCCAGACTaGGGATCAGGCTCAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVIITPD*GSGSSS Trigger: TGAGCTTGAGCCTGATCCCCAGTCTGGAGTAATAAT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTATTCGGTCTTTGAATTaGCCAATAGCTGAAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVIRSLN*PIAEAC Trigger: ACAGGCTTCAGCTATTGGGCAATTCAAAGACCGAAT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTATTCACGAAAGTGTCTaGGATGGTCACTTGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFIHESV*DGHLHH Trigger: ATGGTGCAAGTGACCATCCCAGACACTTTCGTGAAT...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTAATTCCACTGTCTGCTaGCTGCATATGCAATATGGT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVNSTVC*LHMQYG Trigger: ACCATATTGCATATGCAGCCAGCAGACAGTGGAATT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTGTGTACCTTTGTCATTaGCTCAAGTTCTGTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFVYLCH*LKFCAG Trigger: TCCAGCACAGAACTTGAGCCAATGACAAAGGTACAC...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | TTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTAAGTAAGCCCTATTATTGCCAAGACTGTTaGTGGCAGTACACTGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: LALAFVMLHISTVLSKPYYCQDC*WQYTGN Trigger: ATTACCAGTGTACTGCCATCAACAGTCTTGGCAATA...ATAGGGCTTACTTAAAACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTTCTGCTGGCTGCATATaGAATATGGTGATAGATGCA | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFSAGCI*NMVIDA Trigger: TGCATCTATCACCATATTGCATATGCAGCCAGCAGA...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | GGCCAGTTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCGTAGTAGATAGATATTaGCTCCTCCATTTCCTTATT | + |
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Preference number: 4 (lower is better) Translates to: GQFRLSKVDQSVHLENHPVVDRY*LLHFLI Trigger: AATAAGGAAATGGAGGAGCCAATATCTATCTACTAC...GGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAACTGGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATCGCCTCCAATACCAACACTTTATGCTCACCAAAGAAAAGGTTTATTCTAAATGAAACTTTCTTTTACTaGCACAATGGTGTTCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: IASNTNTLCSPKKRFILNETFFY*HNGVPL Trigger: GAGGGGAACACCATTGTGCCAGTAAAAGAAAGTTTC...ATTTAGAATAAACCTTTTCTTTGGTGAGCATAAAGTGTTGGTATTGGAGGCGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTGAAAGACCATTGAATTaGAAGCTTTTCCAGGGACTT | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFERPLN*KLFQGL Trigger: AAGTCCCTGGAAAAGCTTTCAATTCAATGGTCTTTC...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR TCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTAATCTGGAGGATTGTTaGCATCACAGATGTAAATTC | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVNLEDC*HHRCKF Trigger: GAATTTACATCTGTGATGTCAACAATCCTCCAGATT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTGTAAATTCCACTGTCTaGTGGCTGCATATGCAATAT | + |
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Preference number: 4 (lower is better) Translates to: MVVSWVYATVKTHQIIQFVNSTV*WLHMQY Trigger: ATATTGCATATGCAGCCAGCAGACAGTGGAATTTAC...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | TTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTAAGTAAGCCCTATTTTGCCCACAAAATCTaGAGGATTGTTGACATCACA | + |
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Preference number: 4 (lower is better) Translates to: LALAFVMLHISTVLSKPYFAHKI*RIVDIT Trigger: TGTGATGTCAACAATCCTCCAGATTTTGTGGGCAAA...ATAGGGCTTACTTAAAACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | ATCGCCTCCAATACCAACACTTTATGCTCACCAAAGAAAAGGTTTATTCTAAATCTTTTACTGGCACAATaGTGTTCCCCTCAATCTTAT | + |
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Preference number: 4 (lower is better) Translates to: IASNTNTLCSPKKRFILNLLLAQ*CSPQSY Trigger: ATAAGATTGAGGGGAACACCATTGTGCCAGTAAAAG...ATTTAGAATAAACCTTTTCTTTGGTGAGCATAAAGTGTTGGTATTGGAGGCGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTGCTCAAGTTCTGTGCTaGAATTTAAATTCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVAQVLC*NLNSSA Trigger: AGCAGAAGAATTTAAATTCCAGCACAGAACTTGAGC...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR GCA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTGGCTCAAGTTCTGTaGTGGAATTTAAATTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NKPRVLALAFVMLHISTVLAQVL*WNLNSS Trigger: AGAAGAATTTAAATTCCAGCACAGAACTTGAGCCAA...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 90 bp | GTGTTGTGGCCAGCATGGATGGAAGATGGCAGAGTTCCTTCTAGCTaGACGCCATCAGCTGAAATTGCCTCACTTTGTTGGGGATGGTGT | + |
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Preference number: 5 (lower is better) Translates to: VLWPAWMEDGRVPSS*TPSAEIASLCWGWC Trigger: ACACCATCCCCAACAAAGTGAGGCAATTTCAGCTGATGGCGTCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCTGGCCACAACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 90 bp | GTCAGGCTGTGTGGTAGTTTCCAGTGGAGGATTAGGCTCATATTCTaGCTCCAAGACTGCTGTAGTAGTAGGTTCGGTGTTGTGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: VRLCGSFQWRIRLIF*LQDCCSSRFGVVAS Trigger: GCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGAGCCTAATCCTCCACTGGAAACTACCACACAGCCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 90 bp | TCATATTCTGGCTCCAAGACTGCTGTAGTAGTAGGTTCGGTGTTGTaGCCAGCATGGATGGAAGATGGCAGAGTTCCTTCTAGCTGGACG | + |
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Preference number: 5 (lower is better) Translates to: SYSGSKTAVVVGSVL*PAWMEDGRVPSSWT Trigger: CGTCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 90 bp | GAAAGGCAAGACAAGGAAATAGGATGGCCTGCTTCTGGTCTTCCTTaGATGGTACAAAAGGGCTTGGAAGGTTTGACTAAGACAGTGACG | + |
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Preference number: 5 (lower is better) Translates to: ERQDKEIGWPASGLP*MVQKGLEGLTKTVT Trigger: CGTCACTGTCTTAGTCAAACCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCAGGCCATCCTATTTCCTTGTCTTGCCTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 90 bp | GAGAAGAGTAACATTAGATCCAACAGTCACATTCACGAAAGTGTCTaGGATGGTCACTTGCACCATACTGACCTGACCTGCAAGGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: EKSNIRSNSHIHESV*DGHLHHTDLTCKAV Trigger: AACTGCCTTGCAGGTCAGGTCAGTATGGTGCAAGTGACCATCCCAGACACTTTCGTGAATGTGACTGTTGGATCTAATGTTACTCTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS TCA 90 bp | TATTGGCTCCTCCATTTCCTTATTGTGGAAGAAAGACCATTGAATTaGAAGCTTTTCCAGGGACTTCTCGGTGGTGGTATAGAGGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: YWLLHFLIVEERPLN*KLFQGLLGGGIEAE Trigger: CTCTGCCTCTATACCACCACCGAGAAGTCCCTGGAAAAGCTTTCAATTCAATGGTCTTTCTTCCACAATAAGGAAATGGAGGAGCCAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTGTCTGGGATGGTCACTaGCACCATACTGACCTGACC | + |
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Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVVWDGH*HHTDLT Trigger: GGTCAGGTCAGTATGGTGCAAGTGACCATCCCAGAC...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | GGCCAGTTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCCGCCATCAGCTGAAATaGCCTCACTTTGTTGGGGAT | + |
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Preference number: 5 (lower is better) Translates to: GQFRLSKVDQSVHLENHPRHQLK*PHFVGD Trigger: ATCCCCAACAAAGTGAGGCAATTTCAGCTGATGGCG...GGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAACTGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | GGCCAGTTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCTGCTTCTGGTCTTCCTaGGATGGTACAAAAGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: GQFRLSKVDQSVHLENHPCFWSS*DGTKGL Trigger: AAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCA...GGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAACTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS GCA 90 bp | GTAAATTCCACTGTCTGCTGGCTGCATATGCAATATGGTGATAGATaGATTACCGGGATTAGTAGCCCCAATTATTCGGTCTTTGAATTG | + |
|
Preference number: 5 (lower is better) Translates to: VNSTVCWLHMQYGDR*ITGISSPNYSVFEL Trigger: CAATTCAAAGACCGAATAATTGGGGCTACTAATCCCGGTAATGCATCTATCACCATATTGCATATGCAGCCAGCAGACAGTGGAATTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTAGGAGGCCTTGGTTTTaGCCCACAAAATCTGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVRRPWF*PTKSGG Trigger: TCCTCCAGATTTTGTGGGCAAAAACCAAGGCCTCCT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTGACGTCAAGGAGGCCTaGGTTTTTGCCCACAAAATC | + |
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Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVDVKEA*VFAHKI Trigger: GATTTTGTGGGCAAAAACCAAGGCCTCCTTGACGTC...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAGGTGTACCTTTGTCATaGGCTCAAGTTCTGTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: IIKGNKEALWDGGNHLLLGVPLS*AQVLCW Trigger: CCAGCACAGAACTTGAGCCAATGACAAAGGTACACC...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTGTATCCTCTCCCGCCTaGCTCAGAGGCTCAATTATT | + |
|
Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVVSSPA*LRGSII Trigger: AATAATTGAGCCTCTGAGCAAGGCGGGAGAGGATAC...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTACTCCAGTGGCCGTGTaGAAACTTTCTTTTACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVTPVAV*KLSFTG Trigger: GCCAGTAAAAGAAAGTTTCAACACGGCCACTGGAGT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | TTTAGATTATCTAAAGTAGACCAAAGTGTTCATCTGGAAAACCATCCCAGTCTGAATTGCCTCACTTTGTaGGGGATGGTGTACCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: FRLSKVDQSVHLENHPSLNCLTL*GMVYLC Trigger: ACAAAGGTACACCATCCCCAACAAAGTGAGGCAATT...CAGACTGGGATGGTTTTCCAGATGAACACTTTGGTCTACTTTAGATAATCTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | ATTATAAAAGGGAACAAAGAAGCACTTTGGGATGGTGGAAACCATCTACTTCTAATGGTACAAAAGGGCTaGGAAGGTTTGACTAAGACA | + |
|
Preference number: 5 (lower is better) Translates to: IIKGNKEALWDGGNHLLLMVQKG*EGLTKT Trigger: TGTCTTAGTCAAACCTTCCAAGCCCTTTTGTACCAT...TAGAAGTAGATGGTTTCCACCATCCCAAAGTGCTTCTTTGTTCCCTTTTATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | AATAAACCACGTGTCTTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTAGAAAGACCATTGAATaGAAAGCTTTTCCAGGGACT | + |
|
Preference number: 5 (lower is better) Translates to: NKPRVLALAFVMLHISTVRKTIE*KAFPGT Trigger: AGTCCCTGGAAAAGCTTTCAATTCAATGGTCTTTCT...AACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAAGACACGTGGTTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | ATGGTGGTTTCATGGGTGTATGCAACTGTCAAAACTCATCAAATTATACAGTTTATTTCACAGGAACTATaGCCAAGACTGTTGATGGCA | + |
|
Preference number: 5 (lower is better) Translates to: MVVSWVYATVKTHQIIQFISQEL*PRLLMA Trigger: TGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAAT...AAACTGTATAATTTGATGAGTTTTGACAGTTGCATACACCCATGAAACCACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS TCA 90 bp | GTGAAGACGTTAAGTCAATTTCACAGGAACTATTGCCAAGACTGTTaGTGGCAGTACACTGGTAATAACCTTGTTCAAAATTTGTTAGAT | + |
|
Preference number: 5 (lower is better) Translates to: VKTLSQFHRNYCQDC*WQYTGNNLVQNLLD Trigger: ATCTAACAAATTTTGAACAAGGTTATTACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTGACTTAACGTCTTCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS-3UTR CAA 90 bp | TTGGCCTTGGCCTTTGTTATGTTACATATTAGTACAGTTTTAAGTAAGCCCTATAAATTCTTCTGCTGCTaGGATTTAACTTTGTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: LALAFVMLHISTVLSKPYKFFCC*DLTLFL Trigger: CAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTT...ATAGGGCTTACTTAAAACTGTACTAATATGTAACATAACAAAGGCCAAGGCCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS TCA 72 bp | TCTGTCTCAGTCTCCGGGTCCAGCTCTGGGTGTGGTTaGATCTCTGCCTCAGGTGCTAGCACTGGCACTGAA | + |
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Preference number: 6 (lower is better) Translates to: SVSVSGSSSGCG*ISASGASTGTE Trigger: TTCAGTGCCAGTGCTAGCACCTGAGGCAGAGATTCAACCACACCCAGAGCTGGACCCGGAGACTGAGACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | GGCTCCAAGACTGCTGTAGTAGTAGGTTCGGTGTTGTaGCCAGCATGGATGGAAGATGGCAGAGTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GSKTAVVVGSVL*PAWMEDGRVPS Trigger: AGAAGGAACTCTGCCATCTTCCATCCATGCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | CTCTGGTTCAGGGTCAGGCTGTGTGGTAGTTTCCAGTaGAGGATTAGGCTCATATTCTGGCTCCAAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: LWFRVRLCGSFQ*RIRLIFWLQDC Trigger: GCAGTCTTGGAGCCAGAATATGAGCCTAATCCTCCACTGGAAACTACCACACAGCCTGACCCTGAACCAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 90 bp | GGCTCATATTCTGGCTCCAAGACTGCTGTAGTAGTAGGTTCGGTGTaGTGGCCAGCATGGATGGAAGATGGCAGAGTTCCTTCTAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GSYSGSKTAVVVGSV*WPAWMEDGRVPSSW Trigger: CCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGAGCC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS GCA 72 bp | CAGTGGAGGATTAGGCTCATATTCTGGCTCCAAGACTaGTGTAGTAGTAGGTTCGGTGTTGTGGCCAGCATG | + |
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Preference number: 6 (lower is better) Translates to: QWRIRLIFWLQD*CSSRFGVVASM Trigger: CATGCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGAGCCTAATCCTCCACTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | CCAGCATGGATGGAAGATGGCAGAGTTCCTTCTAGCTaGACGCCATCAGCTGAAATTGCCTCACTTTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: PAWMEDGRVPSS*TPSAEIASLCW Trigger: CCAACAAAGTGAGGCAATTTCAGCTGATGGCGTCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 72 bp | CCTGCTTCTGGTCTTCCTTGGATGGTACAAAAGGGCTaGGAAGGTTTGACTAAGACAGTGACGTCAAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PASGLPWMVQKG*EGLTKTVTSRR Trigger: CCTCCTTGACGTCACTGTCTTAGTCAAACCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 90 bp | ATAGGATGGCCTGCTTCTGGTCTTCCTTGGATGGTACAAAAGGGCTaGGAAGGTTTGACTAAGACAGTGACGTCAAGGAGGCCTTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: IGWPASGLPWMVQKG*EGLTKTVTSRRPWF Trigger: AAACCAAGGCCTCCTTGACGTCACTGTCTTAGTCAAACCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCAGGCCATCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | AGAAAGGCAAGACAAGGAAATAGGATGGCCTGCTTCTaGTCTTCCTTGGATGGTACAAAAGGGCTTGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: RKARQGNRMACF*SSLDGTKGLGR Trigger: CCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCAGGCCATCCTATTTCCTTGTCTTGCCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | ACGCCATCAGCTGAAATTGCCTCACTTTGTTGGGGATaGTGTACCTTTGTCATTGGCTCAAGTTCTGTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TPSAEIASLCWG*CTFVIGSSSVL Trigger: CAGCACAGAACTTGAGCCAATGACAAAGGTACACCATCCCCAACAAAGTGAGGCAATTTCAGCTGATGGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 72 bp | GGTCTTCCTTGGATGGTACAAAAGGGCTTGGAAGGTTaGACTAAGACAGTGACGTCAAGGAGGCCTTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: GLPWMVQKGLEG*TKTVTSRRPWF Trigger: AAACCAAGGCCTCCTTGACGTCACTGTCTTAGTCAAACCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CCA 72 bp | TGTGGTAGTTTCCAGTGGAGGATTAGGCTCATATTCTaGCTCCAAGACTGCTGTAGTAGTAGGTTCGGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: CGSFQWRIRLIF*LQDCCSSRFGV Trigger: AACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGAGCCTAATCCTCCACTGGAAACTACCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS GCA 72 bp | ACTGTCTGCTGGCTGCATATGCAATATGGTGATAGATaGATTACCGGGATTAGTAGCCCCAATTATTCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: TVCWLHMQYGDR*ITGISSPNYSV Trigger: GACCGAATAATTGGGGCTACTAATCCCGGTAATGCATCTATCACCATATTGCATATGCAGCCAGCAGACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 90 bp | ATATTGGCTCCTCCATTTCCTTATTGTGGAAGAAAGACCATTGAATaGAAAGCTTTTCCAGGGACTTCTCGGTGGTGGTATAGAGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: ILAPPFPYCGRKTIE*KAFPGTSRWWYRGR Trigger: TCTGCCTCTATACCACCACCGAGAAGTCCCTGGAAAAGCTTTCAATTCAATGGTCTTTCTTCCACAATAAGGAAATGGAGGAGCCAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS GCA 72 bp | GGCTCAAGTTCTGTGCTGGAATTTAAATTCTTCTGCTaGTTGGATTTAACTTTGTTCCTGGCAAAGTACACC | + |
|
Preference number: 6 (lower is better) Translates to: GSSSVLEFKFFC*LDLTLFLAKYT Trigger: GGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTTAAATTCCAGCACAGAACTTGAGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 72 bp | TTGCCTCACTTTGTTGGGGATGGTGTACCTTTGTCATaGGCTCAAGTTCTGTGCTGGAATTTAAATTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LPHFVGDGVPLS*AQVLCWNLNSS Trigger: AGAAGAATTTAAATTCCAGCACAGAACTTGAGCCAATGACAAAGGTACACCATCCCCAACAAAGTGAGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS GCA 72 bp | ATTGGCTCAAGTTCTGTGCTGGAATTTAAATTCTTCTaGTGCTTGGATTTAACTTTGTTCCTGGCAAAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: IGSSSVLEFKFF*CLDLTLFLAKY Trigger: GTACTTTGCCAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTTAAATTCCAGCACAGAACTTGAGCCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 72 bp | TCAAGTTCTGTGCTGGAATTTAAATTCTTCTGCTGCTaGGATTTAACTTTGTTCCTGGCAAAGTACACCACA | + |
|
Preference number: 6 (lower is better) Translates to: SSSVLEFKFFCC*DLTLFLAKYTT Trigger: TGTGGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTTAAATTCCAGCACAGAACTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS CAA 72 bp | CTGGAATTTAAATTCTTCTGCTGCTTGGATTTAACTTaGTTCCTGGCAAAGTACACCACACAGATGATAACA | + |
|
Preference number: 6 (lower is better) Translates to: LEFKFFCCLDLT*FLAKYTTQMIT Trigger: TGTTATCATCTGTGTGGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTTAAATTCCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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| CDS TCA 72 bp | TTAAGTCAATTTCACAGGAACTATTGCCAAGACTGTTaGTGGCAGTACACTGGTAATAACCTTGTTCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: LSQFHRNYCQDC*WQYTGNNLVQN Trigger: ATTTTGAACAAGGTTATTACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTGACTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033806.5 |
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