Pregenerated sensors for VRK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064090Ensembl transcript IDs: ENSMUST00000078362.13, ENSMUST00000109504.8, ENSMUST00000156264.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGCTGCCGGCCTGCTCTGCAGCATTGTGGGCTGGCTGTCTTCCTaGTCCTCTCTCTGCCTTGCTCTTGTCTCCCTGTGGACTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: GAAGLLCSIVGWLSS*SSLCLALVSLWTFF Trigger: AAAGAAAGTCCACAGGGAGACAAGAGCAAGGCAGAGAGAGGAGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCCGGCAGCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | CAGGTTGGTTTTAGCAGTCTGGACAGCCACAGGGTCGTCCAGCTTTaGTTCCCAAGGAAGCTTCCCGAAGAGCCAGTGCAGCATGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: QVGFSSLDSHRVVQL*FPRKLPEEPVQHAV Trigger: TACTGCATGCTGCACTGGCTCTTCGGGAAGCTTCCTTGGGAAGCAAAGCTGGACGACCCTGTGGCTGTCCAGACTGCTAAAACCAACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | TGTATTTTCCTTGTCCTTGAGTTTTCCGGTGCTGCCGGCCTGCTCTaGAGCATTGTGGGCTGGCTGTCTTCCTGCTCCTCTCTCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: CIFLVLEFSGAAGLL*SIVGWLSSCSSLCL Trigger: AAGGCAGAGAGAGGAGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCCGGCAGCACCGGAAAACTCAAGGACAAGGAAAATACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 90 bp | AGCACCGACTCTGGGAGTTCATCCAGCAGGTTGGTTTTAGCAGTCTaGACAGCCACAGGGTCGTCCAGCTTTGCTTCCCAAGGAAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: STDSGSSSSRLVLAV*TATGSSSFASQGSF Trigger: GAAGCTTCCTTGGGAAGCAAAGCTGGACGACCCTGTGGCTGTCCAGACTGCTAAAACCAACCTGCTGGATGAACTCCCAGAGTCGGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 90 bp | TCCCAGATTACCCGTGGGCGTGTGTCTGTACCGAGGCAGGGATCTTaGCTTCCTGATGGGATCTCTTCTAGTGCAGTCCAGATAGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: SQITRGRVSVPRQGS*LPDGISSSAVQIGL Trigger: AAGCCCTATCTGGACTGCACTAGAAGAGATCCCATCAGGAAGCCAAGATCCCTGCCTCGGTACAGACACACGCCCACGGGTAATCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | ATTCATGTATTTTCCTTGTCCTTGAGTTTTCCGGTGCTGCCGGCCTaGTCTGCAGCATTGTGGGCTGGCTGTCTTCCTGCTCCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: IHVFSLSLSFPVLPA*SAALWAGCLPAPLS Trigger: AGAGAGAGGAGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCCGGCAGCACCGGAAAACTCAAGGACAAGGAAAATACATGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 90 bp | TTCACTGCAACTGCTTCCAGAAGGAGCCCACTTAAGCACCGACTCTaGGAGTTCATCCAGCAGGTTGGTTTTAGCAGTCTGGACAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: FTATASRRSPLKHRL*EFIQQVGFSSLDSH Trigger: GTGGCTGTCCAGACTGCTAAAACCAACCTGCTGGATGAACTCCCAGAGTCGGTGCTTAAGTGGGCTCCTTCTGGAAGCAGTTGCAGTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | GGAAAGCTAAGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTTaGCCAGTGCCCACCGGTTTCCTTCCATATCATCCAGAATTTTGC | + |
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Preference number: 5 (lower is better) Translates to: GKLSISVQTLQSRSS*PVPTGFLPYHPEFC Trigger: GCAAAATTCTGGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGATGATCGGCTCTGGAGGGTTTGGACTGATATACTTAGCTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS TCA 90 bp | GAACTTAGCTGGGAACTCATTGGCTGGTTTTCTTGTAGCCTTTGGTaGATCAACTTTTTGTTGGGCTGGAGTCCGCACATGGACACTCTG | + |
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Preference number: 5 (lower is better) Translates to: ELSWELIGWFSCSLW*INFLLGWSPHMDTL Trigger: CAGAGTGTCCATGTGCGGACTCCAGCCCAACAAAAAGTTGATTCACCAAAGGCTACAAGAAAACCAGCCAATGAGTTCCCAGCTAAGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | TCTTGCCCAGTGCCCACCGGTTTCCTTCCATATCATCCAGAATTTTaGCTTCTGGGAGTGGAACCGGAAGCTTATATTTCTCTTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SCPVPTGFLPYHPEF*LLGVEPEAYISLFF Trigger: GAAGAAAAGAGAAATATAAGCTTCCGGTTCCACTCCCAGAAGGCAAAATTCTGGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS GCA 90 bp | AAGGATTTCAACATCACTCCTCCTGGACGGGGCCACTCCTTTGTGTaGATCCAAACTTGTAAACTCTATTGTCCCATTATGGCCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: KDFNITPPGRGHSFV*IQTCKLYCPIMALS Trigger: AGAAAGGGCCATAATGGGACAATAGAGTTTACAAGTTTGGATGCACACAAAGGAGTGGCCCCGTCCAGGAGGAGTGATGTTGAAATCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | ATACACATCTGCCTTTGTCTCTTCACTCAGAGTCAACTGAAAAATTaGAGGCCAAAACCTTGGAGAACTTTCCAAGTCTGTGACTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: IHICLCLFTQSQLKN*RPKPWRTFQVCDSQ Trigger: CTGGGAGTCACAGACTTGGAAAGTTCTCCAAGGTTTTGGCCTGCAATTTTTCAGTTGACTCTGAGTGAAGAGACAAAGGCAGATGTGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 90 bp | TATGGCCCTTTCTGGGATCTTCCTGATACTGTTTGTGGTTCCCATTaGGACAATATCTGTAGGAAAGTCCATAGTCTGCAAGATAAACCC | + |
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Preference number: 5 (lower is better) Translates to: YGPFWDLPDTVCGSH*DNICRKVHSLQDKP Trigger: GGGTTTATCTTGCAGACTATGGACTTTCCTACAGATATTGTCCCAATGGGAACCACAAACAGTATCAGGAAGATCCCAGAAAGGGCCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 90 bp | AAATATCAGCAGACAGAATATAGTGATCCCATAGTAATACACATCTaGCTTTGTCTCTTCACTCAGAGTCAACTGAAAAATTGCAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KYQQTEYSDPIVIHI*LCLFTQSQLKNCRP Trigger: TGGCCTGCAATTTTTCAGTTGACTCTGAGTGAAGAGACAAAGGCAGATGTGTATTACTATGGGATCACTATATTCTGTCTGCTGATATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | GGCCTGCTCTGCAGCATTGTGGGCTGGCTGTCTTCCTaGTCCTCTCTCTGCCTTGCTCTTGTCTCCCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: GLLCSIVGWLSS*SSLCLALVSLW Trigger: CCACAGGGAGACAAGAGCAAGGCAGAGAGAGGAGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | CTTGTCCTTGAGTTTTCCGGTGCTGCCGGCCTGCTCTaGAGCATTGTGGGCTGGCTGTCTTCCTGCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LVLEFSGAAGLL*SIVGWLSSCSS Trigger: AGAGGAGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCCGGCAGCACCGGAAAACTCAAGGACAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | ACCCGTGGGCGTGTGTCTGTACCGAGGCAGGGATCTTaGCTTCCTGATGGGATCTCTTCTAGTGCAGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: TRGRVSVPRQGS*LPDGISSSAVQ Trigger: CTGGACTGCACTAGAAGAGATCCCATCAGGAAGCCAAGATCCCTGCCTCGGTACAGACACACGCCCACGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | TTTAGCAGTCTGGACAGCCACAGGGTCGTCCAGCTTTaGTTCCCAAGGAAGCTTCCCGAAGAGCCAGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: FSSLDSHRVVQL*FPRKLPEEPVQ Trigger: CTGCACTGGCTCTTCGGGAAGCTTCCTTGGGAAGCAAAGCTGGACGACCCTGTGGCTGTCCAGACTGCTAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | TTTTCCTTGTCCTTGAGTTTTCCGGTGCTGCCGGCCTaGTCTGCAGCATTGTGGGCTGGCTGTCTTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: FSLSLSFPVLPA*SAALWAGCLPA Trigger: AGCAGGAAGACAGCCAGCCCACAATGCTGCAGAGCAGGCCGGCAGCACCGGAAAACTCAAGGACAAGGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CAA 72 bp | CACTTAAGCACCGACTCTGGGAGTTCATCCAGCAGGTaGGTTTTAGCAGTCTGGACAGCCACAGGGTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: HLSTDSGSSSSR*VLAVWTATGSS Trigger: GGACGACCCTGTGGCTGTCCAGACTGCTAAAACCAACCTGCTGGATGAACTCCCAGAGTCGGTGCTTAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | TCTGGGAGTTCATCCAGCAGGTTGGTTTTAGCAGTCTaGACAGCCACAGGGTCGTCCAGCTTTGCTTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: SGSSSSRLVLAV*TATGSSSFASQ Trigger: TTGGGAAGCAAAGCTGGACGACCCTGTGGCTGTCCAGACTGCTAAAACCAACCTGCTGGATGAACTCCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS TCA 72 bp | TTGCAGGCCAAAACCTTGGAGAACTTTCCAAGTCTGTaGCTCCCAGATTACCCGTGGGCGTGTGTCTGTACC | + |
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Preference number: 6 (lower is better) Translates to: LQAKTLENFPSL*LPDYPWACVCT Trigger: GGTACAGACACACGCCCACGGGTAATCTGGGAGTCACAGACTTGGAAAGTTCTCCAAGGTTTTGGCCTGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | ACTGCTTCCAGAAGGAGCCCACTTAAGCACCGACTCTaGGAGTTCATCCAGCAGGTTGGTTTTAGCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: TASRRSPLKHRL*EFIQQVGFSSL Trigger: CAGACTGCTAAAACCAACCTGCTGGATGAACTCCCAGAGTCGGTGCTTAAGTGGGCTCCTTCTGGAAGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | CAGTCCAAACCCTCCAGAGCCGATCATCTTGCCCAGTaGCCACCGGTTTCCTTCCATATCATCCAGAATTTT | + |
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Preference number: 6 (lower is better) Translates to: QSKPSRADHLAQ*PPVSFHIIQNF Trigger: AAAATTCTGGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGATGATCGGCTCTGGAGGGTTTGGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS GCA 72 bp | AGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTTaGCCAGTGCCCACCGGTTTCCTTCCATATCATCCA | + |
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Preference number: 6 (lower is better) Translates to: SISVQTLQSRSS*PVPTGFLPYHP Trigger: TGGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGATGATCGGCTCTGGAGGGTTTGGACTGATATACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS CCA 72 bp | GCATGCAGTAACCAAGGATTTCAACATCACTCCTCCTaGACGGGGCCACTCCTTTGTGTGCATCCAAACTTG | + |
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Preference number: 6 (lower is better) Translates to: ACSNQGFQHHSS*TGPLLCVHPNL Trigger: CAAGTTTGGATGCACACAAAGGAGTGGCCCCGTCCAGGAGGAGTGATGTTGAAATCCTTGGTTACTGCATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CAA 72 bp | AAGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTaGCCCAGTGCCCACCGGTTTCCTTCCATATCATCC | + |
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Preference number: 6 (lower is better) Translates to: KYISPNPPEPII*PSAHRFPSISS Trigger: GGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGATGATCGGCTCTGGAGGGTTTGGACTGATATACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS CAA 90 bp | GGGAAAGCTAAGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTaGCCCAGTGCCCACCGGTTTCCTTCCATATCATCCAGAATTTTG | + |
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Preference number: 6 (lower is better) Translates to: GKAKYISPNPPEPII*PSAHRFPSISSRIL Trigger: CAAAATTCTGGATGATATGGAAGGAAACCGGTGGGCACTGGGCAAGATGATCGGCTCTGGAGGGTTTGGACTGATATACTTAGCTTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS CCA 72 bp | TCTCTGCCTTGCTCTTGTCTCCCTGTGGACTTTCTTTaGGAACTTAGCTGGGAACTCATTGGCTGGTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SLPCSCLPVDFL*ELSWELIGWFS Trigger: AGAAAACCAGCCAATGAGTTCCCAGCTAAGTTCCCAAAGAAAGTCCACAGGGAGACAAGAGCAAGGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS TCA 72 bp | TGGGAACTCATTGGCTGGTTTTCTTGTAGCCTTTGGTaGATCAACTTTTTGTTGGGCTGGAGTCCGCACATG | + |
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Preference number: 6 (lower is better) Translates to: WELIGWFSCSLW*INFLLGWSPHM Trigger: CATGTGCGGACTCCAGCCCAACAAAAAGTTGATTCACCAAAGGCTACAAGAAAACCAGCCAATGAGTTCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | GTGCCCACCGGTTTCCTTCCATATCATCCAGAATTTTaGCTTCTGGGAGTGGAACCGGAAGCTTATATTTCT | + |
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Preference number: 6 (lower is better) Translates to: VPTGFLPYHPEF*LLGVEPEAYIS Trigger: AGAAATATAAGCTTCCGGTTCCACTCCCAGAAGGCAAAATTCTGGATGATATGGAAGGAAACCGGTGGGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 ENSMUST00000156264.2 |
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| CDS GCA 72 bp | AACATCACTCCTCCTGGACGGGGCCACTCCTTTGTGTaGATCCAAACTTGTAAACTCTATTGTCCCATTATG | + |
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Preference number: 6 (lower is better) Translates to: NITPPGRGHSFV*IQTCKLYCPIM Trigger: CATAATGGGACAATAGAGTTTACAAGTTTGGATGCACACAAAGGAGTGGCCCCGTCCAGGAGGAGTGATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | GGTGAATCAACTTTTTGTTGGGCTGGAGTCCGCACATaGACACTCTGTACTTTAGTGGAAAATTCCAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GESTFCWAGVRT*TLCTLVENSSG Trigger: GCCACTGGAATTTTCCACTAAAGTACAGAGTGTCCATGTGCGGACTCCAGCCCAACAAAAAGTTGATTCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | TCTTGTCTCCCTGTGGACTTTCTTTGGGAACTTAGCTaGGAACTCATTGGCTGGTTTTCTTGTAGCCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: SCLPVDFLWELS*ELIGWFSCSLW Trigger: CCAAAGGCTACAAGAAAACCAGCCAATGAGTTCCCAGCTAAGTTCCCAAAGAAAGTCCACAGGGAGACAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CAA 72 bp | ATTTCAACATCACTCCTCCTGGACGGGGCCACTCCTTaGTGTGCATCCAAACTTGTAAACTCTATTGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: ISTSLLLDGATP*CASKLVNSIVP Trigger: TGGGACAATAGAGTTTACAAGTTTGGATGCACACAAAGGAGTGGCCCCGTCCAGGAGGAGTGATGTTGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CAA 90 bp | CTTGTCTCCCTGTGGACTTTCTTTGGGAACTTAGCTGGGAACTCATaGGCTGGTTTTCTTGTAGCCTTTGGTGAATCAACTTTTTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: LVSLWTFFGNLAGNS*AGFLVAFGESTFCW Trigger: CCAACAAAAAGTTGATTCACCAAAGGCTACAAGAAAACCAGCCAATGAGTTCCCAGCTAAGTTCCCAAAGAAAGTCCACAGGGAGACAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS TCA 72 bp | TCTATTGTCCCATTATGGCCCTTTCTGGGATCTTCCTaGTACTGTTTGTGGTTCCCATTGGGACAATATCTG | + |
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Preference number: 6 (lower is better) Translates to: SIVPLWPFLGSS*YCLWFPLGQYL Trigger: CAGATATTGTCCCAATGGGAACCACAAACAGTATCAGGAAGATCCCAGAAAGGGCCATAATGGGACAATAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | GGTTTTCTTGTAGCCTTTGGTGAATCAACTTTTTGTTaGGCTGGAGTCCGCACATGGACACTCTGTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: GFLVAFGESTFC*AGVRTWTLCTL Trigger: TAAAGTACAGAGTGTCCATGTGCGGACTCCAGCCCAACAAAAAGTTGATTCACCAAAGGCTACAAGAAAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CCA 72 bp | ACTCAGAGTCAACTGAAAAATTGCAGGCCAAAACCTTaGAGAACTTTCCAAGTCTGTGACTCCCAGATTACC | + |
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Preference number: 6 (lower is better) Translates to: TQSQLKNCRPKP*RTFQVCDSQIT Trigger: GGTAATCTGGGAGTCACAGACTTGGAAAGTTCTCCAAGGTTTTGGCCTGCAATTTTTCAGTTGACTCTGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS CAA 72 bp | CTGTGGACTTTCTTTGGGAACTTAGCTGGGAACTCATaGGCTGGTTTTCTTGTAGCCTTTGGTGAATCAACT | + |
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Preference number: 6 (lower is better) Translates to: LWTFFGNLAGNS*AGFLVAFGEST Trigger: AGTTGATTCACCAAAGGCTACAAGAAAACCAGCCAATGAGTTCCCAGCTAAGTTCCCAAAGAAAGTCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS TCA 72 bp | ATCTCTTCTAGTGCAGTCCAGATAGGGCTTGCAATATaGACCTTGGAAACTCATATAGCTGGGTGTTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: ISSSAVQIGLAI*TLETHIAGCLL Trigger: CAACAAACACCCAGCTATATGAGTTTCCAAGGTTCATATTGCAAGCCCTATCTGGACTGCACTAGAAGAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | CCCATTGGGACAATATCTGTAGGAAAGTCCATAGTCTaGAAGATAAACCCGGTCTGGATTTGTAAAATCCAA | + |
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Preference number: 6 (lower is better) Translates to: PIGTISVGKSIV*KINPVWICKIQ Trigger: TTGGATTTTACAAATCCAGACCGGGTTTATCTTGCAGACTATGGACTTTCCTACAGATATTGTCCCAATGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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| CDS GCA 72 bp | CAGACAGAATATAGTGATCCCATAGTAATACACATCTaGCTTTGTCTCTTCACTCAGAGTCAACTGAAAAAT | + |
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Preference number: 6 (lower is better) Translates to: QTEYSDPIVIHI*LCLFTQSQLKN Trigger: ATTTTTCAGTTGACTCTGAGTGAAGAGACAAAGGCAGATGTGTATTACTATGGGATCACTATATTCTGTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078362.13 ENSMUST00000109504.8 |
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