Pregenerated sensors for VPS72 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008958Ensembl transcript IDs: ENSMUST00000009102.9
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACGAAGGGAGGGCGGAGTaGAGAGCCAGGTCAGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNEGRAE*RARSGE Trigger: CTCTCCTGACCTGGCTCTCCACTCCGCCCTCCCTTC...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| 3UTR-3UTR CCA 90 bp | TGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTAACAAGGGCGAAGGTTaGCAGAAGGGAGGGCGGAGT | + |
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Preference number: 2 (lower is better) Translates to: CRPGWPRTQKSPCLCPNLNKGEG*QKGGRS Trigger: ACTCCGCCCTCCCTTCTGCCAACCTTCGCCCTTGTT...AAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| 3UTR-3UTR TCA 90 bp | ACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACAGAACTAGGGAGGAACTaGGGGAAACAAGGGCGAAGG | + |
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Preference number: 2 (lower is better) Translates to: TRLASNSEIPLPLPQPYTELGRN*GKQGRR Trigger: CCTTCGCCCTTGTTTCCCTCAGTTCCTCCCTAGTTC...TGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| 3UTR-3UTR TCA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACAAGAGCACAAGTAAATaGAATGAACTAGGGAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNKSTSK*NELGRN Trigger: GTTCCTCCCTAGTTCATTTCATTTACTTGTGCTCTT...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCCCAGCGGTTTTCCGTaGGGCCCGGCCCCCAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNPSGFP*GPAPSQ Trigger: TTGGCTGGGGGCCGGGCCCCACGGAAAACCGCTGGG...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR GCA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTCTGGGAGCTGCTTaGTGGGGTGCTGACCTTGCG | + |
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Preference number: 4 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNLLGAA*WGADLA Trigger: CGCAAGGTCAGCACCCCAGCAAGCAGCTCCCAGAAG...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | GTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACTGGGAGCTGCTTGCTaGGGTGCTGACCTTGCGAGG | + |
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Preference number: 4 (lower is better) Translates to: VGLELRNPPASAPTLHIRLGAAC*GADLAR Trigger: CCTCGCAAGGTCAGCACCCCAGCAAGCAGCTCCCAG...TCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | TTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACCCCGGTCCCAGCATGTaGAGCCAGTGCAGAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LASNSEIPLPLPQPYTSDPGPSM*SQCRGC Trigger: ACAGCCTCTGCACTGGCTCCACATGCTGGGACCGGG...GTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | ACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACAGTCCCGGTACAAAGCTaGACGGTGGGTCACTGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TRLASNSEIPLPLPQPYTVPVQS*TVGHWA Trigger: TGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGAC...TGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | GTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGAGTCCTGGAGCTCCAGTaGCAGCAGCGTCTTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: VGLELRNPPASAPTLHIRVLELQ*QQRLLL Trigger: GAGGAGAAGACGCTGCTGCCACTGGAGCTCCAGGAC...TCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | TTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACTCAGAGCCATCGTCCTaGAGCTCCAGTGGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LASNSEIPLPLPQPYTSDSEPSS*SSSGSS Trigger: GCTGCTGCCACTGGAGCTCCAGGACGATGGCTCTGA...GTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | ACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACACCACATTTTCCTCCTTaGGGCCGGGCTCCCCAACAA | + |
|
Preference number: 4 (lower is better) Translates to: TRLASNSEIPLPLPQPYTPHFPP*GRAPQQ Trigger: TTGTTGGGGAGCCCGGCCCCAAGGAGGAAAATGTGG...TGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | CCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACAAAAAGTGAGCAGGAGGGGTaGCAGCGGCAGCTCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PRTQKSPCLCPNLTHQTKSEQEG*QRQLQS Trigger: GGACTGGAGCTGCCGCTGCCACCCCTCCTGCTCACT...TTTTGTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | CCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACAAAACGCCGAGGCGGTGGGTaGAAGTCCGTGGGCAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PRTQKSPCLCPNLTHQTKRRGGG*KSVGSD Trigger: ATCACTGCCCACGGACTTCCACCCACCGCCTCGGCG...TTTTGTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR TCA 90 bp | GGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGTGCTCAGCTGTAGACTaGCGCATAGACTTGCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GWPRTQKSPCLCPNLTHQCSAVD*RIDLRL Trigger: CAGCCGCAAGTCTATGCGTCAGTCTACAGCTGAGCA...CTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | ACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCTGCGCTTCCTCCTTaGCTCTTCCGCTTCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: TRLASNSEIPLPLPQPYTSALPP*LFRFSI Trigger: GATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGA...TGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | TTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACGCGTCTTCTCCTCTCTaGCCTTCTGGGAGCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LASNSEIPLPLPQPYTSDASSPL*PSGSCL Trigger: CAAGCAGCTCCCAGAAGGCCAGAGAGGAGAAGACGC...GTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR TCA 90 bp | GGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGGAAGTCCGTGGGCAGTaGTGTACTTCTTGTACGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GWPRTQKSPCLCPNLTHQEVRGQ*CTSCTP Trigger: AGGCGTACAAGAAGTACATCACTGCCCACGGACTTC...CTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | GGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGGTGGGTGGAAGTCCGTaGGCAGTGATGTACTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GWPRTQKSPCLCPNLTHQVGGSP*AVMYFL Trigger: CAAGAAGTACATCACTGCCCACGGACTTCCACCCAC...CTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR TCA 90 bp | TGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTTGTCCTTGCCTCTCTTaGACCCGAAGGAACGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: CRPGWPRTQKSPCLCPNLCPCLS*TRRNVC Trigger: ACAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACA...AAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR TCA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACTCAGACTGGTCTCCTTaGTACTCATCATCTCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNSDWSP*YSSSPD Trigger: ATCTGGAGATGATGAGTATCAAGGAGACCAGTCTGA...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR TCA 90 bp | CCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACAAAATTGATGACAATCTTCTaGCGCAAGGCTCGAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PRTQKSPCLCPNLTHQTKLMTIF*RKARGP Trigger: TGGGCCTCGAGCCTTGCGTCAGAAGATTGTCATCAA...TTTTGTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | CCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACAAAAGTGGTAGGTGATTATTaGCCCAGGGCACTTCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: PRTQKSPCLCPNLTHQTKVVGDY*PRALPL Trigger: AAGCGGAAGTGCCCTGGGCCAATAATCACCTACCAC...TTTTGTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CCA 90 bp | TTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGACTTCTCCATCACTGGATaGTTCATCCCCTTCATCAAT | + |
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Preference number: 4 (lower is better) Translates to: LASNSEIPLPLPQPYTSDFSITG*FIPFIN Trigger: ATTGATGAAGGGGATGAACCATCCAGTGATGGAGAA...GTCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 90 bp | TATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTaGGCAGACCTCCCGCACCGGGACCTTCGGGGGTCGCCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: YVCNRVPVQSWTVGH*ADLPHRDLRGSPLG Trigger: CCCCAGGGGCGACCCCCGAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTTACAGACATA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS GCA 90 bp | GGTGGCAGCGGCAGCTCCAGTCCCGGTCCCAGCATGTGGAGCCAGTaGAGAGGCTGTAGGAGCAGGATCAAGGCCTTCCACGTCCACATT | + |
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Preference number: 5 (lower is better) Translates to: GGSGSSSPGPSMWSQ*RGCRSRIKAFHVHI Trigger: AATGTGGACGTGGAAGGCCTTGATCCTGCTCCTACAGCCTCTGCACTGGCTCCACATGCTGGGACCGGGACTGGAGCTGCCGCTGCCACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 90 bp | AGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTaGACGGTGGGTCACTGGGCAGACCTCCCGCACCGGGACCTTCGG | + |
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Preference number: 5 (lower is better) Translates to: SSGIGYVCNRVPVQS*TVGHWADLPHRDLR Trigger: CCGAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTTACAGACATACCCTATGCCACTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 90 bp | TGGGGCCGGGCTCCCCAACAAGCGGCACCGTCACTGAGTGGTAGGTaGTTATTGGCCCAGGGCACTTCCGCTTCTTGTGAACCTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: WGRAPQQAAPSLSGR*LLAQGTSASCEPAS Trigger: AGAAGCAGGTTCACAAGAAGCGGAAGTGCCCTGGGCCAATAATCACCTACCACTCAGTGACGGTGCCGCTTGTTGGGGAGCCCGGCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 90 bp | AAGTTGAGCTCTTCAGTGATCTTGGCCTCCCTGAGCAGCTCTTCCTaGGTTAGTGGTCGCTCACAGTGGGGACCCTTCCGCCTCCGGGAC | + |
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Preference number: 5 (lower is better) Translates to: KLSSSVILASLSSSS*VSGRSQWGPFRLRD Trigger: GTCCCGGAGGCGGAAGGGTCCCCACTGTGAGCGACCACTAACCCAGGAAGAGCTGCTCAGGGAGGCCAAGATCACTGAAGAGCTCAACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CAA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCCTCCGGGACTGTCCTaGCCTCTCTTGAACCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNPPGLS*PLLNPK Trigger: CTTCGGGTTCAAGAGAGGCAAGGACAGTCCCGGAGG...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 90 bp | GCGTCTTCTCCTCTCTGGCCTTCTGGGAGCTGCTTGCTGGGGTGCTaGCCTTGCGAGGCCTCAAGCTCTTTAGAGGCTCCTTATAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: ASSPLWPSGSCLLGC*PCEASSSLEAPYRL Trigger: AAGCCTATAAGGAGCCTCTAAAGAGCTTGAGGCCTCGCAAGGTCAGCACCCCAGCAAGCAGCTCCCAGAAGGCCAGAGAGGAGAAGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS GCA 90 bp | GGTGAAACCCCCGTAAGTTGTCTGGTAGAACTCATCTTCCTCCTCTaGTTCCAGGAGCCCAGAAAGCCGGTTCCCAGCGGTTTTCCGTGG | + |
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Preference number: 5 (lower is better) Translates to: GETPVSCLVELIFLL*FQEPRKPVPSGFPW Trigger: CCACGGAAAACCGCTGGGAACCGGCTTTCTGGGCTCCTGGAAGCAGAGGAGGAAGATGAGTTCTACCAGACAACTTACGGGGGTTTCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CAA 90 bp | CTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACAACCCGAAGGAACGTTaGTCGTGTGTGCTCAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LCRPGWPRTQKSPCLCPNNPKER*SCVLSC Trigger: ACAGCTGAGCACACACGACAAACGTTCCTTCGGGTT...GTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 90 bp | CCTTGCGAGGCCTCAAGCTCTTTAGAGGCTCCTTATAGGCTTTGGTaGCGACTCTGCGCTTCCTCCTTGGCTCTTCCGCTTCTCCATCAC | + |
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Preference number: 5 (lower is better) Translates to: PCEASSSLEAPYRLW*RLCASSLALPLLHH Trigger: GTGATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTCGTCACCAAAGCCTATAAGGAGCCTCTAAAGAGCTTGAGGCCTCGCAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CAA 90 bp | ACCAGGTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACACTGTCCTTGCCTCTCTaGAACCCGAAGGAACGTTTG | + |
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Preference number: 5 (lower is better) Translates to: TRLASNSEIPLPLPQPYTLSLPL*NPKERL Trigger: CAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACAG...TGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAACCTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS-3UTR CAA 90 bp | GTTGGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCCCAACCTTACACATCAGAGCCTCACGGATGATCTaGAAGGCTCTAGCAGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VGLELRNPPASAPTLHIRASRMI*KALAVA Trigger: TGCCACTGCTAGAGCCTTCAAGATCATCCGTGAGGC...TCTGATGTGTAAGGTTGGGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 90 bp | GACTCTGCGCTTCCTCCTTGGCTCTTCCGCTTCTCCATCACTGGATaGTTCATCCCCTTCATCAATGTCAAAGTCAGAGTCTACCTCATC | + |
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Preference number: 5 (lower is better) Translates to: DSALPPWLFRFSITG*FIPFINVKVRVYLI Trigger: GATGAGGTAGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | AACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTaGGCAGACCTCCCGCACCGGGACCTTCGGGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: NRVPVQSWTVGH*ADLPHRDLRGS Trigger: CGACCCCCGAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | CCGGGGCCCAGCGCCGAGGCGGTGGGTGGAAGTCCGTaGGCAGTGATGTACTTCTTGTACGCCTCACGGATG | + |
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Preference number: 6 (lower is better) Translates to: PGPSAEAVGGSP*AVMYFLYASRM Trigger: CATCCGTGAGGCGTACAAGAAGTACATCACTGCCCACGGACTTCCACCCACCGCCTCGGCGCTGGGCCCCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 72 bp | CTTGGGGCCGGGCTCCCCAACAAGCGGCACCGTCACTaGGTGGTAGGTGATTATTGGCCCAGGGCACTTCCG | + |
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Preference number: 6 (lower is better) Translates to: LGAGLPNKRHRH*VVGDYWPRALP Trigger: CGGAAGTGCCCTGGGCCAATAATCACCTACCACTCAGTGACGGTGCCGCTTGTTGGGGAGCCCGGCCCCAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS GCA 72 bp | GGCAGCTCCAGTCCCGGTCCCAGCATGTGGAGCCAGTaGAGAGGCTGTAGGAGCAGGATCAAGGCCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: GSSSPGPSMWSQ*RGCRSRIKAFH Trigger: GTGGAAGGCCTTGATCCTGCTCCTACAGCCTCTGCACTGGCTCCACATGCTGGGACCGGGACTGGAGCTGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | CTGAGCAGCTCTTCCTGGGTTAGTGGTCGCTCACAGTaGGGACCCTTCCGCCTCCGGGACTGTCCTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: LSSSSWVSGRSQ*GPFRLRDCPCL Trigger: GAGGCAAGGACAGTCCCGGAGGCGGAAGGGTCCCCACTGTGAGCGACCACTAACCCAGGAAGAGCTGCTCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | CAGGATCAAGGCCTTCCACGTCCACATTTTCCTCCTTaGGGCCGGGCTCCCCAACAAGCGGCACCGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: QDQGLPRPHFPP*GRAPQQAAPSL Trigger: CAGTGACGGTGCCGCTTGTTGGGGAGCCCGGCCCCAAGGAGGAAAATGTGGACGTGGAAGGCCTTGATCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | ATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTaGGTCACTGGGCAGACCTCCCGCACCGGGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: MSVTGSRYKAGR*VTGQTSRTGTF Trigger: GAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTTACAGACAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | ATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTaGACGGTGGGTCACTGGGCAGACCTCCCGCACCGG | + |
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Preference number: 6 (lower is better) Translates to: IGYVCNRVPVQS*TVGHWADLPHR Trigger: CCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTTACAGACATACCCTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | TCTTCAGTGATCTTGGCCTCCCTGAGCAGCTCTTCCTaGGTTAGTGGTCGCTCACAGTGGGGACCCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: SSVILASLSSSS*VSGRSQWGPFR Trigger: GCGGAAGGGTCCCCACTGTGAGCGACCACTAACCCAGGAAGAGCTGCTCAGGGAGGCCAAGATCACTGAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CAA 90 bp | CCGCCTCCGGGACTGTCCTTGCCTCTCTTGAACCCGAAGGAACGTTaGTCGTGTGTGCTCAGCTGTAGACTGACGCATAGACTTGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: PPPGLSLPLLNPKER*SCVLSCRLTHRLAA Trigger: AGCCGCAAGTCTATGCGTCAGTCTACAGCTGAGCACACACGACAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACAGTCCCGGAGGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 72 bp | GCTCCCCAACAAGCGGCACCGTCACTGAGTGGTAGGTaGTTATTGGCCCAGGGCACTTCCGCTTCTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: APQQAAPSLSGR*LLAQGTSASCE Trigger: TTCACAAGAAGCGGAAGTGCCCTGGGCCAATAATCACCTACCACTCAGTGACGGTGCCGCTTGTTGGGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 72 bp | CGAAGGAACGTTTGTCGTGTGTGCTCAGCTGTAGACTaGCGCATAGACTTGCGGCTGTCAGAGCCATCGTCC | + |
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Preference number: 6 (lower is better) Translates to: RRNVCRVCSAVD*RIDLRLSEPSS Trigger: GGACGATGGCTCTGACAGCCGCAAGTCTATGCGTCAGTCTACAGCTGAGCACACACGACAAACGTTCCTTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CAA 72 bp | GCGGTGGGTGGAAGTCCGTGGGCAGTGATGTACTTCTaGTACGCCTCACGGATGATCTTGAAGGCTCTAGCA | + |
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Preference number: 6 (lower is better) Translates to: AVGGSPWAVMYF*YASRMILKALA Trigger: TGCTAGAGCCTTCAAGATCATCCGTGAGGCGTACAAGAAGTACATCACTGCCCACGGACTTCCACCCACCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 72 bp | GCCTCAAGCTCTTTAGAGGCTCCTTATAGGCTTTGGTaGCGACTCTGCGCTTCCTCCTTGGCTCTTCCGCTT | + |
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Preference number: 6 (lower is better) Translates to: ASSSLEAPYRLW*RLCASSLALPL Trigger: AAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTCGTCACCAAAGCCTATAAGGAGCCTCTAAAGAGCTTGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | CTTATAGGCTTTGGTGACGACTCTGCGCTTCCTCCTTaGCTCTTCCGCTTCTCCATCACTGGATGGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: LIGFGDDSALPP*LFRFSITGWFI Trigger: GATGAACCATCCAGTGATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTCGTCACCAAAGCCTATAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CAA 72 bp | GGACTGTCCTTGCCTCTCTTGAACCCGAAGGAACGTTaGTCGTGTGTGCTCAGCTGTAGACTGACGCATAGA | + |
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Preference number: 6 (lower is better) Translates to: GLSLPLLNPKER*SCVLSCRLTHR Trigger: TCTATGCGTCAGTCTACAGCTGAGCACACACGACAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS TCA 72 bp | GAGTCTACCTCATCCTCCGTATCAGACTGGTCTCCTTaGTACTCATCATCTCCAGATTCCTCGGTGAAACCC | + |
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Preference number: 6 (lower is better) Translates to: ESTSSSVSDWSP*YSSSPDSSVKP Trigger: GGGTTTCACCGAGGAATCTGGAGATGATGAGTATCAAGGAGACCAGTCTGATACGGAGGATGAGGTAGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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| CDS CCA 72 bp | CTTCCTCCTTGGCTCTTCCGCTTCTCCATCACTGGATaGTTCATCCCCTTCATCAATGTCAAAGTCAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LPPWLFRFSITG*FIPFINVKVRV Trigger: GACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCGGAAGAGCCAAGGAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009102.9 |
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