RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VPS54 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020128

Ensembl transcript IDs: ENSMUST00000006221.14, ENSMUST00000109578.8, ENSMUST00000132017.2

Found 199 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTaGATCCAGTTCCCAACACTGATCCTTCTTTTCCCTTCCCCCACC +
Preference number: 1 (lower is better)
Translates to: SLLRDAQNGFLCRSH*IQFPTLILLFPSPT
Trigger: GGTGGGGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR TCA 90 bp AACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATAGACACCTaGTCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCT +
Preference number: 1 (lower is better)
Translates to: NLSLFPERMKNVIDT*SLAPYSGMHRMAFS
Trigger: AGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACCAGAAACACATCCCGTaGTCAGATGAACGACCTGGG +
Preference number: 2 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHQKHIP*SDERPG
Trigger: CCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTG...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
3UTR-3UTR CCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACCCACCTCAGTCACTTTaGGTCCCAGGTTCAGTTCCT +
Preference number: 2 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHPPQSL*VPGSVP
Trigger: AGGAACTGAACCTGGGACCCAAAGTGACTGAGGTGG...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
3UTR-3UTR TCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAATCCAGTTCCCAACACTaGTCCTTCTTTTCCCTTCCC +
Preference number: 2 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKESSSQH*SFFSLP
Trigger: GGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGA...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTCCAGTTCCCAACACTaGTCCTTCTTTTCCCTTCCC +
Preference number: 2 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLSSSQH*SFFSLP
Trigger: GGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGA...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR GCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAACTCCTTACTCAGGGATaGACAGAATGGCTTTCTCTG +
Preference number: 2 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKELLTQG*TEWLSL
Trigger: CAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAG...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCCAGAAACACATCCCGTaGTCAGATGAACGACCTGGG +
Preference number: 2 (lower is better)
Translates to: VSRENEKCYRHLITCSLLQKHIP*SDERPG
Trigger: CCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTG...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTCAGAAACACATCCCGTaGTCAGATGAACGACCTGGG +
Preference number: 2 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVQKHIP*SDERPG
Trigger: CCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTG...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CAA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAACCCACCTCAGTCACTTaGGGTCCCAGGTTCAGTTCC +
Preference number: 3 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKEPTSVT*GPRFSS
Trigger: GGAACTGAACCTGGGACCCAAAGTGACTGAGGTGGG...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR TCA 72 bp AGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTaGATCCAGTTCCCAACACTGATCCTTCTTTTCCCT +
Preference number: 3 (lower is better)
Translates to: RDAQNGFLCRSH*IQFPTLILLFP
Trigger: AGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CAA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAACCCACCTCAGTCACTTaGGGTCCCAGGTTCAGTTCC +
Preference number: 3 (lower is better)
Translates to: VPSLNKVGHHMNFIALEEPTSVT*GPRFSS
Trigger: GGAACTGAACCTGGGACCCAAAGTGACTGAGGTGGG...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
3UTR-3UTR CAA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACCATATATTTAACAGTTaGAGGCTTTTACCCAGTGAC +
Preference number: 3 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHHIFNS*RLLPSD
Trigger: GTCACTGGGTAAAAGCCTCAAACTGTTAAATATATG...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
3UTR GCA 72 bp AGAGAGAATGAAAAATGTTATAGACACCTGATCACTTaGTCCTTACTCAGGGATGCACAGAATGGCTTTCTC +
Preference number: 3 (lower is better)
Translates to: RENEKCYRHLIT*SLLRDAQNGFL
Trigger: GAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCAAGGGCCCCAAGCAGTaGCGTGCTCTTCCTCCCACA +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVKGPKQ*RALPPT
Trigger: TGTGGGAGGAAGAGCACGTCACTGCTTGGGGCCCTT...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp ATCCCACTGAATCCAGTTCCCAACACTGATCCTTCTTTTCCCTTCCCCCACCTCAAGGGCCCCAAGCAGTaGCGTGCTCTTCCTCCCACA +
Preference number: 4 (lower is better)
Translates to: IPLNPVPNTDPSFPFPHLKGPKQ*RALPPT
Trigger: TGTGGGAGGAAGAGCACGTCACTGCTTGGGGCCCTT...GAGGTGGGGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCTGGAGGAGCACACGCTaGTGTCTGCTCCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVWRSTR*CLLLAG
Trigger: TCCAGCAAGGAGCAGACATCAGCGTGTGCTCCTCCA...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CCACCTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGCTGTGGGAGGTAGAGTaGAGGTATGACTTCAGTGTC +
Preference number: 4 (lower is better)
Translates to: PPQSLWVPGSVPNTPGIQLWEVE*RYDFSV
Trigger: GACACTGAAGTCATACCTTCACTCTACCTCCCACAG...CTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp CACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAAAGGGCCCCAAGCAGTaGCGTGCTCTTCCTCCCACA +
Preference number: 4 (lower is better)
Translates to: HFGSQVQFLTHQASRFSSKGPKQ*RALPPT
Trigger: TGTGGGAGGAAGAGCACGTCACTGCTTGGGGCCCTT...TGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCAGTCGGGCTTCAAAGTaGGCCCGGATCACGGGAATG +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFSRASK*ARITGM
Trigger: CATTCCCGTGATCCGGGCTCACTTTGAAGCCCGACT...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GGCATCCAGATTTTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTACCTGCACTGTAGGCTaGGTTTGGTGTACAGTGGCC +
Preference number: 4 (lower is better)
Translates to: GIQIFFRNTSRGQMNDLGTCTVG*VWCTVA
Trigger: GGCCACTGTACACCAAACTCAGCCTACAGTGCAGGT...ACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAAAATCTGGATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCGCCGGAAGCTGTGAATaGCCTGAAGCTCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFAGSCE*PEAPAA
Trigger: TGCAGCAGGAGCTTCAGGGCATTCACAGCTTCCGGC...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTATCAACCGCCGCAGATaGTGGCTCACCCTCACTGAA +
Preference number: 4 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFINRRR*WLTLTE
Trigger: TTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGAT...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CCACCTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGAGTACATTCTGGTTCTaGTACCGAATCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: PPQSLWVPGSVPNTPGIQSTFWF*YRITAA
Trigger: TGCAGCAGTGATTCGGTATCAGAACCAGAATGTACT...CTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp CACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAATCAACCGCCGCAGATaGTGGCTCACCCTCACTGAA +
Preference number: 4 (lower is better)
Translates to: HFGSQVQFLTHQASRFSSINRRR*WLTLTE
Trigger: TTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGAT...TGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCATACCGAATCACTGCTaGAGGGCTCGCTATGTGGAG +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFIPNHC*RARYVE
Trigger: CTCCACATAGCGAGCCCTGCAGCAGTGATTCGGTAT...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCCACCTGTGGGTTCCTTaGGACACACATCTGGCAGTG +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFHLWVP*DTHLAV
Trigger: CACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTG...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS-3UTR TCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACACCTGCACTGTAGGCTaGGTTTGGTGTACAGTGGCC +
Preference number: 4 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHTCTVG*VWCTVA
Trigger: GGCCACTGTACACCAAACTCAGCCTACAGTGCAGGT...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp AGTCTTCAGATAGCTTACTCATCAACCTTGTATTTCTGGCCCCAACACAGCAGCATCAACCGCCGCAGATaGTGGCTCACCCTCACTGAA +
Preference number: 4 (lower is better)
Translates to: SLQIAYSSTLYFWPQHSSINRRR*WLTLTE
Trigger: TTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGAT...GCTGCTGTGTTGGGGCCAGAAATACAAGGTTGATGAGTAAGCTATCTGAAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp CACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAATACCGAATCACTGCTaGAGGGCTCGCTATGTGGAG +
Preference number: 4 (lower is better)
Translates to: HFGSQVQFLTHQASRFSSIPNHC*RARYVE
Trigger: CTCCACATAGCGAGCCCTGCAGCAGTGATTCGGTAT...TGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCGCAGGAACATCAGCCTaGTTCCAACGCTCGTTGTCT +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFAGTSA*FQRSLS
Trigger: AGACAACGAGCGTTGGAAGCAGGCTGATGTTCCTGC...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTGCAGGGCTCGCTATGTaGAGACGTGTTTCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFAGLAM*RRVSLR
Trigger: TCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGC...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp ATCCCACTGAATCCAGTTCCCAACACTGATCCTTCTTTTCCCTTCCCCCACCTCCCGACAACTGCATACTaGTGTCCCTCAACAACAAGA +
Preference number: 4 (lower is better)
Translates to: IPLNPVPNTDPSFPFPHLPTTAY*CPSTTR
Trigger: TCTTGTTGTTGAGGGACACCAGTATGCAGTTGTCGG...GAGGTGGGGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp ATCCCACTGAATCCAGTTCCCAACACTGATCCTTCTTTTCCCTTCCCCCACCTCGCTTACAAATATTCCTaGAACACGGGGAAGGAACAG +
Preference number: 4 (lower is better)
Translates to: IPLNPVPNTDPSFPFPHLAYKYS*NTGKEQ
Trigger: CTGTTCCTTCCCCGTGTTTCAGGAATATTTGTAAGC...GAGGTGGGGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAGCCGGAAGCTGTGAATaGCCTGAAGCTCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKEAGSCE*PEAPAA
Trigger: TGCAGCAGGAGCTTCAGGGCATTCACAGCTTCCGGC...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACGCAGGAACATCAGCCTaGTTCCAACGCTCGTTGTCT +
Preference number: 4 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHAGTSA*FQRSLS
Trigger: AGACAACGAGCGTTGGAAGCAGGCTGATGTTCCTGC...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp TCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTTTTCCTGAAGCAACTTaGAAGAAGCTGCGTCGCGAC +
Preference number: 4 (lower is better)
Translates to: SLAPYSGMHRMAFSVDPTFPEAT*KKLRRD
Trigger: GTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAA...AGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACGCAGGGCTCGCTATGTaGAGACGTGTTTCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNAGLAM*RRVSLR
Trigger: TCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGC...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCCCGACAACTGCATACTaGTGTCCCTCAACAACAAGA +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFPTTAY*CPSTTR
Trigger: TCTTGTTGTTGAGGGACACCAGTATGCAGTTGTCGG...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAGCATGCTCCATTGCTTaGGGGGCAGTCGGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKEACSIA*GAVGLQ
Trigger: TTGAAGCCCGACTGCCCCCCAAGCAATGGAGCATGC...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACTGGCTCAGCTTTTCCTaGAGCAACTTGGAAGAAGCT +
Preference number: 4 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNWLSFS*SNLEEA
Trigger: AGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGCCA...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGCACTGTAGGCTaGGTTTGGTGTACAGTGGCC +
Preference number: 4 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKETCTVG*VWCTVA
Trigger: GGCCACTGTACACCAAACTCAGCCTACAGTGCAGGT...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTGCTGCAGAACCTCTTaGGTTGTTGCTATTAAGTCC +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFCCRTS*VVAIKS
Trigger: GGACTTAATAGCAACAACTCAAGAGGTTCTGCAGCA...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp AGTCTTCAGATAGCTTACTCATCAACCTTGTATTTCTGGCCCCAACACAGCAGCGGAGACGTGTTTCTTTaGGAGGTAGTATCAACCGCC +
Preference number: 4 (lower is better)
Translates to: SLQIAYSSTLYFWPQHSSGDVFL*EVVSTA
Trigger: GGCGGTTGATACTACCTCTCAAAGAAACACGTCTCC...GCTGCTGTGTTGGGGCCAGAAATACAAGGTTGATGAGTAAGCTATCTGAAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCAGTACATTCTGGTTCTaGTACCGAATCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFSTFWF*YRITAA
Trigger: TGCAGCAGTGATTCGGTATCAGAACCAGAATGTACT...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTACCGTCCTTTGCTCTTaGCATGAGAAATTTGACAGC +
Preference number: 4 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFTVLCS*HEKFDS
Trigger: GCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGT...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTGCTTACAAATATTCCTaGAACACGGGGAAGGAACAG +
Preference number: 4 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFAYKYS*NTGKEQ
Trigger: CTGTTCCTTCCCCGTGTTTCAGGAATATTTGTAAGC...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GATTCTTGGTGTGAGACACAGGCACTTTCATTTGTAGAGTGCTGCCGATTCTGGAAGCTACATCTGCTGTaGCCAACCCATTTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: DSWCETQALSFVECCRFWKLHLL*PTHFEV
Trigger: GACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTT...CCAGAATCGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACACCAAGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAAGCTACATCTGCTGTaGCCAACCCATTTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFKLHLL*PTHFEV
Trigger: GACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTT...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCGTTCACAAACTTATTTaGTTGGCTCTGAAGGGCCCC +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFVHKLI*LALKGP
Trigger: GGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAAC...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGCATGCTCCATTGCTTaGGGGGCAGTCGGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGACSIA*GAVGLQ
Trigger: TTGAAGCCCGACTGCCCCCCAAGCAATGGAGCATGC...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp GATTCTTGGTGTGAGACACAGGCACTTTCATTTGTAGAGTGCTGCCGATTCTGGGGTAGAGTGAAGGTATaGCTTCAGTGTCCACAAAGT +
Preference number: 4 (lower is better)
Translates to: DSWCETQALSFVECCRFWGRVKV*LQCPQS
Trigger: ACTTTGTGGACACTGAAGTCATACCTTCACTCTACC...CCAGAATCGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACACCAAGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp AGACACCTGATCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTCGTAGAGAGATCTGGTaGGCAATGTTTACTTCCACA +
Preference number: 4 (lower is better)
Translates to: RHLITCSLLRDAQNGFLCRREIW*AMFTST
Trigger: TGTGGAAGTAAACATTGCTCACCAGATCTCTCTACG...ACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACTGCTGCAGAACCTCTTaGGTTGTTGCTATTAAGTCC +
Preference number: 4 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNCCRTS*VVAIKS
Trigger: GGACTTAATAGCAACAACTCAAGAGGTTCTGCAGCA...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCGCTTTTCTCAAGAACTaGCAGAACAACACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFAFLKN*QNNTVD
Trigger: ATCCACAGTGTTGTTCTGTCAGTTCTTGAGAAAAGC...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCACCGTCCTTTGCTCTTaGCATGAGAAATTTGACAGC +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFTVLCS*HEKFDS
Trigger: GCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGT...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTATTTGCTTGGCTCTaGAGGGCCCCAAGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLLFAWL*RAPSSD
Trigger: GTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAA...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GGCATCCAGATTTTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTGGCAACTTCTTGAATTaGAGTACTTCAGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: GIQIFFRNTSRGQMNDLGGNFLN*STSADL
Trigger: CAGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCC...ACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAAAATCTGGATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCGTGACCAACCCATTTTaGGGTCCTCCGTCATTTATT +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFVTNPF*GPPSFI
Trigger: AATAAATGACGGAGGACCTCAAAATGGGTTGGTCAC...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCACATCTGGCAGTGACTaGACAGGTCGAATGTGTTTT +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFTSGSD*TGRMCF
Trigger: AAAACACATTCGACCTGTGCAGTCACTGCCAGATGT...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTTTAGTCCAACAACTTaGAAAGCACCAGCTCCAAGA +
Preference number: 4 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFFSPTT*KAPAPR
Trigger: TCTTGGAGCTGGTGCTTTGCAAGTTGTTGGACTAAA...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGTAAAAAGCTACATCTaGTGTGACCAACCCATTTTG +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVVKSYI*CDQPIL
Trigger: CAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTAC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGCTCCAAGAACTAACTaGCAACTTCTTGAATTGAAG +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVAPRTN*QLLELK
Trigger: CTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACCGCTCTTCTAAAACTTaGCATTCACCTTCCAGTGGT +
Preference number: 4 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNRSSKT*HSPSSG
Trigger: ACCACTGGAAGGTGAATGCCAAGTTTTAGAAGAGCG...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTACACACATCTGGCAGTaGCTGCACAGGTCGAATGTG +
Preference number: 4 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGTHIWQ*LHRSNV
Trigger: CACATTCGACCTGTGCAGTCACTGCCAGATGTGTGT...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCATCCCCAAGTTTTTGTaGAGAAGTCAGATTCTCTTT +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVIPKFL*RSQILF
Trigger: AAAGAGAATCTGACTTCTTCACAAAAACTTGGGGAT...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAACTGTGGGAGGTAGAGTaGAGGTATGACTTCAGTGTC +
Preference number: 4 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKELWEVE*RYDFSV
Trigger: GACACTGAAGTCATACCTTCACTCTACCTCCCACAG...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGTCCTGGATTTATCATaGATATGTAAAAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVVLDLS*ICKRVL
Trigger: CAGGACTCTTTTACATATTCATGATAAATCCAGGAC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp AGTCTTCAGATAGCTTACTCATCAACCTTGTATTTCTGGCCCCAACACAGCAGCCGTAGAGAGATCTGGTaGGCAATGTTTACTTCCACA +
Preference number: 4 (lower is better)
Translates to: SLQIAYSSTLYFWPQHSSRREIW*AMFTST
Trigger: TGTGGAAGTAAACATTGCTCACCAGATCTCTCTACG...GCTGCTGTGTTGGGGCCAGAAATACAAGGTTGATGAGTAAGCTATCTGAAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACCGTAGAGAGATCTGGTaGGCAATGTTTACTTCCACA +
Preference number: 4 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHRREIW*AMFTST
Trigger: TGTGGAAGTAAACATTGCTCACCAGATCTCTCTACG...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp AGTCTTCAGATAGCTTACTCATCAACCTTGTATTTCTGGCCCCAACACAGCAGCAGTACATTCTGGTTCTaGTACCGAATCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SLQIAYSSTLYFWPQHSSSTFWF*YRITAA
Trigger: TGCAGCAGTGATTCGGTATCAGAACCAGAATGTACT...GCTGCTGTGTTGGGGCCAGAAATACAAGGTTGATGAGTAAGCTATCTGAAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp AGACACCTGATCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTGGCAACTTCTTGAATTaGAGTACTTCAGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: RHLITCSLLRDAQNGFLCGNFLN*STSADL
Trigger: CAGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCC...ACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTAGTCGGGCTTCAAAGTaGGCCCGGATCACGGGAATG +
Preference number: 4 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVSRASK*ARITGM
Trigger: CATTCCCGTGATCCGGGCTCACTTTGAAGCCCGACT...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAAAGTCGGGCTTCAAAGTaGGCCCGGATCACGGGAATG +
Preference number: 4 (lower is better)
Translates to: VPSLNKVGHHMNFIALEESRASK*ARITGM
Trigger: CATTCCCGTGATCCGGGCTCACTTTGAAGCCCGACT...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCAAAATCTTAGGTACTTaGTCCAGATCTGTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFKILGT*SRSVLD
Trigger: ATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTT...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGGCCGGAAGCTGTGAATaGCCTGAAGCTCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKAGSCE*PEAPAA
Trigger: TGCAGCAGGAGCTTCAGGGCATTCACAGCTTCCGGC...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp TCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTAAGATCCTGAAATTCTaGAGGAACATCAGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SLAPYSGMHRMAFSVDPTKILKF*RNISLL
Trigger: AAGCAGGCTGATGTTCCTGCAGAATTTCAGGATCTT...AGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAAGATCCTGAAATTCTaGAGGAACATCAGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFKILKF*RNISLL
Trigger: AAGCAGGCTGATGTTCCTGCAGAATTTCAGGATCTT...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCTTTAGTCCAACAACTTaGAAAGCACCAGCTCCAAGA +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFFSPTT*KAPAPR
Trigger: TCTTGGAGCTGGTGCTTTGCAAGTTGTTGGACTAAA...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCGTAAAAAGCTACATCTaGTGTGACCAACCCATTTTG +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFVKSYI*CDQPIL
Trigger: CAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTAC...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGACAGAACAACACTGTaGATAATATTCAATGTTGCC +
Preference number: 4 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVDRTTL*IIFNVA
Trigger: GGCAACATTGAATATTATCCACAGTGTTGTTCTGTC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTGCATGCTCCATTGCTTaGGGGGCAGTCGGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVACSIA*GAVGLQ
Trigger: TTGAAGCCCGACTGCCCCCCAAGCAATGGAGCATGC...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTGGCTCAGCTTTTCCTaGAGCAACTTGGAAGAAGCT +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLWLSFS*SNLEEA
Trigger: AGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGCCA...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATATGGAGGAGCACACGCTaGTGTCTGCTCCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: DLVQRNLSLFPERMKNVIWRSTR*CLLLAG
Trigger: TCCAGCAAGGAGCAGACATCAGCGTGTGCTCCTCCA...TATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCTTATTTGCTTGGCTCTaGAGGGCCCCAAGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLLFAWL*RAPSSD
Trigger: GTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAA...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGGTTCACAAACTTATTTaGTTGGCTCTGAAGGGCCCC +
Preference number: 4 (lower is better)
Translates to: AMCSFGFGPKKPESVSREVHKLI*LALKGP
Trigger: GGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAAC...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGCAGGAACATCAGCCTaGTTCCAACGCTCGTTGTCT +
Preference number: 4 (lower is better)
Translates to: LQLCVLLDLVQRNLSLFPAGTSA*FQRSLS
Trigger: AGACAACGAGCGTTGGAAGCAGGCTGATGTTCCTGC...TGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCGAGTTTGGTGTACAGTaGCCATTAACTTCAGTTTAT +
Preference number: 4 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFEFGVQ*PLTSVY
Trigger: ATAAACTGAAGTTAATGGCCACTGTACACCAAACTC...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACTTGACAGCTCGATCATaGCATACATCTGAAGCATTA +
Preference number: 4 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNLTARS*HTSEAL
Trigger: TAATGCTTCAGATGTATGCCATGATCGAGCTGTCAA...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGCCGACAACTGCATACTaGTGTCCCTCAACAACAAGA +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLPTTAY*CPSTTR
Trigger: TCTTGTTGTTGAGGGACACCAGTATGCAGTTGTCGG...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp TCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTGCTCCAAGAACTAACTaGCAACTTCTTGAATTGAAG +
Preference number: 4 (lower is better)
Translates to: SLAPYSGMHRMAFSVDPTAPRTN*QLLELK
Trigger: CTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGC...AGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp CACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGCTCCAAGAACTAACTaGCAACTTCTTGAATTGAAG +
Preference number: 4 (lower is better)
Translates to: HFGSQVQFLTHQASRFSSAPRTN*QLLELK
Trigger: CTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGC...TGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGACACACATCTGGCAGTaGCTGCACAGGTCGAATGTG +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKTHIWQ*LHRSNV
Trigger: CACATTCGACCTGTGCAGTCACTGCCAGATGTGTGT...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCGGAGACGTGTTTCTTTaGGAGGTAGTATCAACCGCC +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLGDVFL*EVVSTA
Trigger: GGCGGTTGATACTACCTCTCAAAGAAACACGTCTCC...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAATTATTTGCTTGGCTCTaGAGGGCCCCAAGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: VPSLNKVGHHMNFIALEELFAWL*RAPSSD
Trigger: GTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAA...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGGCTTACAAATATTCCTaGAACACGGGGAAGGAACAG +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLAYKYS*NTGKEQ
Trigger: CTGTTCCTTCCCCGTGTTTCAGGAATATTTGTAAGC...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAGTGACCAACCCATTTTaGGGTCCTCCGTCATTTATT +
Preference number: 4 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKEVTNPF*GPPSFI
Trigger: AATAAATGACGGAGGACCTCAAAATGGGTTGGTCAC...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTAAGCTACATCTGCTGTaGCCAACCCATTTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGKLHLL*PTHFEV
Trigger: GACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTT...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGACAGTCCATCTATGTTaGTCTGTAACTGTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLTVHLC*SVTVGS
Trigger: GGAACCCACAGTTACAGATCAACATAGATGGACTGT...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp AACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGTGAGACACAAAATCTTAGGTACTTaGTCCAGATCTGTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: NHKIRHSDRLGKILGVRHKILGT*SRSVLD
Trigger: ATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTT...GTGTCTCACACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGTATGTGAATCACCTGTaGGTTCCTTGGGACACACAT +
Preference number: 4 (lower is better)
Translates to: AMCSFGFGPKKPESVSREYVNHL*VPWDTH
Trigger: ATGTGTGTCCCAAGGAACCCACAGGTGATTCACATA...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS-3UTR CCA 90 bp GATTCTTGGTGTGAGACACAGGCACTTTCATTTGTAGAGTGCTGCCGATTCTGGGCTCCAGATCTGTCCTaGATTTATCATGAATATGTA +
Preference number: 4 (lower is better)
Translates to: DSWCETQALSFVECCRFWAPDLS*IYHEYV
Trigger: TACATATTCATGATAAATCCAGGACAGATCTGGAGC...CCAGAATCGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACACCAAGAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCGCTCCAGATCTGTCCTaGATTTATCATGAATATGTA +
Preference number: 4 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFAPDLS*IYHEYV
Trigger: TACATATTCATGATAAATCCAGGACAGATCTGGAGC...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GATTCTTGGTGTGAGACACAGGCACTTTCATTTGTAGAGTGCTGCCGATTCTGGGAGTTTGGTGTACAGTaGCCATTAACTTCAGTTTAT +
Preference number: 4 (lower is better)
Translates to: DSWCETQALSFVECCRFWEFGVQ*PLTSVY
Trigger: ATAAACTGAAGTTAATGGCCACTGTACACCAAACTC...CCAGAATCGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACACCAAGAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp TTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGCAGGGCTCGCTATGTaGAGACGTGTTTCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: LQLCVLLDLVQRNLSLFPAGLAM*RRVSLR
Trigger: TCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGC...TGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGGCTTTTCTCAAGAACTaGCAGAACAACACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLAFLKN*QNNTVD
Trigger: ATCCACAGTGTTGTTCTGTCAGTTCTTGAGAAAAGC...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGGGCAACTTCTTGAATTaGAGTACTTCAGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: AMCSFGFGPKKPESVSREGNFLN*STSADL
Trigger: CAGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCC...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAGATCCCACTGAGGACAAATATTCTTaGATCTCTCATGAATCTTCT +
Preference number: 4 (lower is better)
Translates to: SLAPYSGMHRMAFSVDPTEDKYS*ISHESS
Trigger: AGAAGATTCATGAGAGATGCAAGAATATTTGTCCTC...AGTGGGATCTACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAATTTCCTGAAGCAACTTaGAAGAAGCTGCGTCGCGAC +
Preference number: 4 (lower is better)
Translates to: VPSLNKVGHHMNFIALEEFPEAT*KKLRRD
Trigger: GTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAA...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTCCTCTTCTAAAACTTaGCATTCACCTTCCAGTGGT +
Preference number: 4 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLSSSKT*HSPSSG
Trigger: ACCACTGGAAGGTGAATGCCAAGTTTTAGAAGAGGA...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTTGGCTCAGCTTTTCCTaGAGCAACTTGGAAGAAGCT +
Preference number: 4 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVWLSFS*SNLEEA
Trigger: AGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGCCA...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATATTTCCTGAAGCAACTTaGAAGAAGCTGCGTCGCGAC +
Preference number: 4 (lower is better)
Translates to: DLVQRNLSLFPERMKNVIFPEAT*KKLRRD
Trigger: GTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAA...TATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGTGCTGCAGAACCTCTTaGGTTGTTGCTATTAAGTCC +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKCCRTS*VVAIKS
Trigger: GGACTTAATAGCAACAACTCAAGAGGTTCTGCAGCA...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCAAGATCCTGAAATTCTaGAGGAACATCAGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLKILKF*RNISLL
Trigger: AAGCAGGCTGATGTTCCTGCAGAATTTCAGGATCTT...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGACAGTCCATCTATGTTaGTCTGTAACTAGAGATGGG +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKTVHLC*SVTRDG
Trigger: CCCATCTCTAGTTACAGATCAACATAGATGGACTGT...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS-3UTR TCA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAAGCTTTTCTCAAGAACTaGCAGAACAACACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: VPSLNKVGHHMNFIALEEAFLKN*QNNTVD
Trigger: ATCCACAGTGTTGTTCTGTCAGTTCTTGAGAAAAGC...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATAACCGTCCTTTGCTCTTaGCATGAGAAATTTGACAGC +
Preference number: 4 (lower is better)
Translates to: DLVQRNLSLFPERMKNVITVLCS*HEKFDS
Trigger: GCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGT...TATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp GATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATAACATCTGGCAGTGACTaGACAGGTCGAATGTGTTTT +
Preference number: 4 (lower is better)
Translates to: DLVQRNLSLFPERMKNVITSGSD*TGRMCF
Trigger: AAAACACATTCGACCTGTGCAGTCACTGCCAGATGT...TATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGATCTCCTGCTGATATaGTATAAAATTCTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGDLLLI*YKILLA
Trigger: AGCAAGGAGAATTTTATAGCATATCAGCAGGAGATC...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR GCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTTTTAGTCCAACAACTTaGAAAGCACCAGCTCCAAGA +
Preference number: 4 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVFSPTT*KAPAPR
Trigger: TCTTGGAGCTGGTGCTTTGCAAGTTGTTGGACTAAA...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCGTAAAAAGCTACATCTaGTGTGACCAACCCATTTTG +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLVKSYI*CDQPIL
Trigger: CAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTAC...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCTTGACAGCTCGATCATaGCATACATCTGAAGCATTA +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLLTARS*HTSEAL
Trigger: TAATGCTTCAGATGTATGCCATGATCGAGCTGTCAA...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR TCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCATCCCCAAGTTTTTGTaGAGAAGTCAGATTCTCTTT +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLIPKFL*RSQILF
Trigger: AAAGAGAATCTGACTTCTTCACAAAAACTTGGGGAT...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCGTCCTGGATTTATCATaGATATGTAAAAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLVLDLS*ICKRVL
Trigger: CAGGACTCTTTTACATATTCATGATAAATCCAGGAC...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GTTTCCAGAGAGAATGAAAAATGTTATAGACACCTGATCACTTGCTCCTTACTCGCTCCAGATCTGTCCTaGATTTATCATGAATATGTA +
Preference number: 4 (lower is better)
Translates to: VSRENEKCYRHLITCSLLAPDLS*IYHEYV
Trigger: TACATATTCATGATAAATCCAGGACAGATCTGGAGC...GAGTAAGGAGCAAGTGATCAGGTGTCTATAACATTTTTCATTCTCTCTGGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CCA 90 bp GATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTATATCCTCTTCTAAAACTTaGCATTCACCTTCCAGTGGT +
Preference number: 4 (lower is better)
Translates to: DLVQRNLSLFPERMKNVISSSKT*HSPSSG
Trigger: ACCACTGGAAGGTGAATGCCAAGTTTTAGAAGAGGA...TATAACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR TCA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAAGTCCTGGATTTATCATaGATATGTAAAAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: VPSLNKVGHHMNFIALEEVLDLS*ICKRVL
Trigger: CAGGACTCTTTTACATATTCATGATAAATCCAGGAC...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR GCA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTGATCTCCTGCTGATATaGTATAAAATTCTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVDLLLI*YKILLA
Trigger: AGCAAGGAGAATTTTATAGCATATCAGCAGGAGATC...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGGAGTTTGGTGTACAGTaGCCATTAACTTCAGTTTAT +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKEFGVQ*PLTSVY
Trigger: ATAAACTGAAGTTAATGGCCACTGTACACCAAACTC...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CCA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGGACAGAACAACACTGTaGATAATATTCAATGTTGCC +
Preference number: 4 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKDRTTL*IIFNVA
Trigger: GGCAACATTGAATATTATCCACAGTGTTGTTCTGTC...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS TCA 90 bp ACCGAATCACTGCTGCAGGGCTCGCTATGTGGAGACGTGTTTCTTTaGGAGGTAGTATCAACCGCCGCAGATGCTGGCTCACCCTCACTG +
Preference number: 5 (lower is better)
Translates to: TESLLQGSLCGDVFL*EVVSTAADAGSPSL
Trigger: CAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGCAGCAGTGATTCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CCACCTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGTGCTTCCAACGCTCGTaGTCTAAGAGGAGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: PPQSLWVPGSVPNTPGIQCFQRS*SKRRLS
Trigger: GCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCA...CTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CCA 90 bp TGGAGACGTGTTTCTTTGAGAGGTAGTATCAACCGCCGCAGATGCTaGCTCACCCTCACTGAAAGCATCACTTATGAACCAGCCCTCGTG +
Preference number: 5 (lower is better)
Translates to: WRRVSLRGSINRRRC*LTLTESITYEPALV
Trigger: CACGAGGGCTGGTTCATAAGTGATGCTTTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAACACGTCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTGCTTCCAACGCTCGTaGTCTAAGAGGAGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFCFQRS*SKRRLS
Trigger: GCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCA...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGACACCTGATCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTTCACCTGTGGGTTCCTaGGGACACACATCTGGCAGT +
Preference number: 5 (lower is better)
Translates to: RHLITCSLLRDAQNGFLCSPVGS*GHTSGS
Trigger: ACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTGA...ACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS TCA 90 bp CCTGTTCACAAACTTATTTGCTTGGCTCTGAAGGGCCCCAAGCAGTaGCGTGCTCTTCCTCCCACAGATCTGTTCAGTGTCCACTATGAA +
Preference number: 5 (lower is better)
Translates to: PVHKLICLALKGPKQ*RALPPTDLFSVHYE
Trigger: TTCATAGTGGACACTGAACAGATCTGTGGGAGGAAGAGCACGTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGCTGATGTCTGCTCCTaGCTGGATGAAGAATCAGTA +
Preference number: 5 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVADVCS*LDEESV
Trigger: TACTGATTCTTCATCCAGCAAGGAGCAGACATCAGC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp ATCCCACTGAATCCAGTTCCCAACACTGATCCTTCTTTTCCCTTCCCCCACCTCTGTTCACAAACTTATTaGCTTGGCTCTGAAGGGCCC +
Preference number: 5 (lower is better)
Translates to: IPLNPVPNTDPSFPFPHLCSQTY*LGSEGP
Trigger: GGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACA...GAGGTGGGGGAAGGGAAAAGAAGGATCAGTGTTGGGAACTGGATTCAGTGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGTAACTGTGGGTTCCTaGGGACACACATCTGGCAGT +
Preference number: 5 (lower is better)
Translates to: HFGSQVQFLTHQASRFSSVTVGS*GHTSGS
Trigger: ACTGCCAGATGTGTGTCCCAAGGAACCCACAGTTAC...TGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109578.8
CDS-3UTR CAA 90 bp TTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTCCAGTCTGTCGCAGAACCTCTTGAGTaGTTGCTATTAAGTCCAACG +
Preference number: 5 (lower is better)
Translates to: FFRNTSRGQMNDLGLQSVAEPLE*LLLSPT
Trigger: CGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGC...GACAGACTGGAGACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCGTCCTGCAATTCGTGTaGAGAGGTCATTGCATGAAA +
Preference number: 5 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFVLQFV*RGHCMK
Trigger: TTTCATGCAATGACCTCTCAACACGAATTGCAGGAC...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CTCAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTACTCCTGGATGTTACTaGCTAGTTTTCCTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: LSHFGSQVQFLTHQASRFTPGCY*LVFLAP
Trigger: TGGAGCTAGGAAAACTAGCAAGTAACATCCAGGAGT...AAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGTCTTCAGATAGCTTACTCATCAACCTTGTATTTCTGGCCCCAACACAGCAGCCACAAACTTATTTGCTaGGCTCTGAAGGGCCCCAAG +
Preference number: 5 (lower is better)
Translates to: SLQIAYSSTLYFWPQHSSHKLIC*ALKGPK
Trigger: CTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTG...GCTGCTGTGTTGGGGCCAGAAATACAAGGTTGATGAGTAAGCTATCTGAAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS GCA 90 bp ATCCAGATAATGGCTCAGCTTTTCCTGAAGCAACTTGGAAGAAGCTaGGTCGCGACTTCCTTTCCCACCAGCAGTATTAAAATGAGACCA +
Preference number: 5 (lower is better)
Translates to: IQIMAQLFLKQLGRS*VATSFPTSSIKMRP
Trigger: TGGTCTCATTTTAATACTGCTGGTGGGAAAGGAAGTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGCCATTATCTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCAAAAATCTTAGGTACTaGCTCCAGATCTGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFKNLRY*LQICPG
Trigger: TCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTT...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGACACCTGATCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTGAACCTCTTGAGTTGTaGCTATTAAGTCCAACGCTC +
Preference number: 5 (lower is better)
Translates to: RHLITCSLLRDAQNGFLCEPLEL*LLSPTL
Trigger: GAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTC...ACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCAGAAACACTCCTGGATGTTACTaGCTAGTTTTCCTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: WVPGSVPNTPGIQIFFRNTPGCY*LVFLAP
Trigger: TGGAGCTAGGAAAACTAGCAAGTAACATCCAGGAGT...GTTTCTGAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GGCATCCAGATTTTCTTCAGAAACACATCCCGTGGTCAGATGAACGACCTGGGTCTTGACATGAGAAATTaGACAGCTCGATCATGGCAT +
Preference number: 5 (lower is better)
Translates to: GIQIFFRNTSRGQMNDLGLDMRN*TARSWH
Trigger: ATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAG...ACCCAGGTCGTTCATCTGACCACGGGATGTGTTTCTGAAGAAAATCTGGATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GATTCTTGGTGTGAGACACAGGCACTTTCATTTGTAGAGTGCTGCCGATTCTGGTGTGACCAACCCATTTaGAGGTCCTCCGTCATTTAT +
Preference number: 5 (lower is better)
Translates to: DSWCETQALSFVECCRFWCDQPI*RSSVIY
Trigger: ATAAATGACGGAGGACCTCAAAATGGGTTGGTCACA...CCAGAATCGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACACCAAGAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CAA 90 bp TCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTTCTGTGACCAACCCATTTaGAGGTCCTCCGTCATTTAT +
Preference number: 5 (lower is better)
Translates to: SLWVPGSVPNTPGIQIFFCDQPI*RSSVIY
Trigger: ATAAATGACGGAGGACCTCAAAATGGGTTGGTCACA...GAAGAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 90 bp CTGACTATAATCTCTATACCTCCTGGAGGAGCACACGCTGATGTCTaGTCCTTGCTGGATGAAGAATCAGTAGTACATTCTGGTTCTGAT +
Preference number: 5 (lower is better)
Translates to: LTIISIPPGGAHADV*SLLDEESVVHSGSD
Trigger: ATCAGAACCAGAATGTACTACTGATTCTTCATCCAGCAAGGAGCAGACATCAGCGTGTGCTCCTCCAGGAGGTATAGAGATTATAGTCAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CCA 90 bp CGAGTGAGCATGTCAGTAGTGACGGAGGGGATGTTATCCACACACTaGCAATATTCAAGAATGATTCTTATTAACAGCAAGACGGTTCCG +
Preference number: 5 (lower is better)
Translates to: RVSMSVVTEGMLSTH*QYSRMILINSKTVP
Trigger: CGGAACCGTCTTGCTGTTAATAAGAATCATTCTTGAATATTGCCAGTGTGTGGATAACATCCCCTCCGTCACTACTGACATGCTCACTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGACACCTGATCACTTGCTCCTTACTCAGGGATGCACAGAATGGCTTTCTCTGTAAAAATCTTAGGTACTaGCTCCAGATCTGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: RHLITCSLLRDAQNGFLCKNLRY*LQICPG
Trigger: TCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTT...ACAGAGAAAGCCATTCTGTGCATCCCTGAGTAAGGAGCAAGTGATCAGGTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGCACAAACTTATTTGCTaGGCTCTGAAGGGCCCCAAG +
Preference number: 5 (lower is better)
Translates to: AMCSFGFGPKKPESVSREHKLIC*ALKGPK
Trigger: CTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTG...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCATGCTTCCAACGCTCGTaGTCTAAGAGGAGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: LQLCVLLDLVQRNLSLFPCFQRS*SKRRLS
Trigger: GCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCA...TGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp CAGTCACTTTGGGTCCCAGGTTCAGTTCCTAACACACCAGGCATCCAGATTTTCTGGCAACTTCTTGAATaGAAGTACTTCAGCAGATCT +
Preference number: 5 (lower is better)
Translates to: QSLWVPGSVPNTPGIQIFWQLLE*KYFSRS
Trigger: AGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCCA...GAAAATCTGGATGCCTGGTGTGTTAGGAACTGAACCTGGGACCCAAAGTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGTGTTCACAAACTTATTaGCTTGGCTCTGAAGGGCCC +
Preference number: 5 (lower is better)
Translates to: AMCSFGFGPKKPESVSRECSQTY*LGSEGP
Trigger: GGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACA...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGGAACCTCTTGAGTTGTaGCTATTAAGTCCAACGCTC +
Preference number: 5 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLEPLEL*LLSPTL
Trigger: GAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTC...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGGCAGAACCTCTTGAGTaGTTGCTATTAAGTCCAACG +
Preference number: 5 (lower is better)
Translates to: AVLQLCVLLDLVQRNLSLAEPLE*LLLSPT
Trigger: CGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGC...CAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACTCCTGGATGTTACTaGCTAGTTTTCCTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKETPGCY*LVFLAP
Trigger: TGGAGCTAGGAAAACTAGCAAGTAACATCCAGGAGT...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCACACAAACTTATTTGCTaGGCTCTGAAGGGCCCCAAG +
Preference number: 5 (lower is better)
Translates to: LQLCVLLDLVQRNLSLFPHKLIC*ALKGPK
Trigger: CTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTG...TGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp AGGCAGCTACAGCTGTGTTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAATGTGACCAACCCATTTaGAGGTCCTCCGTCATTTAT +
Preference number: 5 (lower is better)
Translates to: RQLQLCYSYVFFWIWSKECDQPI*RSSVIY
Trigger: ATAAATGACGGAGGACCTCAAAATGGGTTGGTCACA...TTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAGCTGTAGCTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGCACAGTCCATCTATGTaGATCTGTAACTGTGGGTTC +
Preference number: 5 (lower is better)
Translates to: AMCSFGFGPKKPESVSREHSPSM*ICNCGF
Trigger: GAACCCACAGTTACAGATCAACATAGATGGACTGTG...CTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109578.8
CDS TCA 90 bp CTGATATGCTATAAAATTCTCCTTGCTGATCTGTGGGAGGTAGAGTaGAGGTATGACTTCAGTGTCCACAAAGTCCAATCCCCAAGTTTT +
Preference number: 5 (lower is better)
Translates to: LICYKILLADLWEVE*RYDFSVHKVQSPSF
Trigger: AAAACTTGGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCACTCTACCTCCCACAGATCAGCAAGGAGAATTTTATAGCATATCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CAA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTGAACCTCTTGAGTTGTaGCTATTAAGTCCAACGCTC +
Preference number: 5 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGEPLEL*LLSPTL
Trigger: GAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTC...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS CCA 90 bp AAACCGTCCTTTGCTCTTGACATGAGAAATTTGACAGCTCGATCATaGCATACATCTGAAGCATTACACAGTAACTCCTGGATGTTACTT +
Preference number: 5 (lower is better)
Translates to: KPSFALDMRNLTARS*HTSEALHSNSWMLL
Trigger: AAGTAACATCCAGGAGTTACTGTGTAATGCTTCAGATGTATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGTGTTCACAAACTTATTaGCTTGGCTCTGAAGGGCCC +
Preference number: 5 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKCSQTY*LGSEGP
Trigger: GGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACA...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS TCA 90 bp GCTCCAACAAATTCAGAAGTAGATAACAACACCTGCACTGTAGGCTaGGTTTGGTGTACAGTGGCCATTAACTTCAGTTTATTGTATACT +
Preference number: 5 (lower is better)
Translates to: APTNSEVDNNTCTVG*VWCTVAINFSLLYT
Trigger: AGTATACAATAAACTGAAGTTAATGGCCACTGTACACCAAACTCAGCCTACAGTGCAGGTGTTGTTATCTACTTCTGAATTTGTTGGAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTGCAGAACCTCTTGAGTaGTTGCTATTAAGTCCAACG +
Preference number: 5 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVAEPLE*LLLSPT
Trigger: CGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGC...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp GTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGATTCTTGGTTGGCAACTTCTTGAATaGAAGTACTTCAGCAGATCT +
Preference number: 5 (lower is better)
Translates to: VHYNHKIRHSDRLGKILGWQLLE*KYFSRS
Trigger: AGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCCA...ACCAAGAATCTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTAC
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CAA 90 bp TTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCAGAGAGAATGAAAAATGTTAAAAATCTTAGGTACTaGCTCCAGATCTGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: LDLVQRNLSLFPERMKNVKNLRY*LQICPG
Trigger: TCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTT...AACATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TATTTCATTGTACATTATAACCACAAGATTAGGCACTCTGACAGGTTAGGCAAGCTTGACATGAGAAATTaGACAGCTCGATCATGGCAT +
Preference number: 5 (lower is better)
Translates to: YFIVHYNHKIRHSDRLGKLDMRN*TARSWH
Trigger: ATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAG...CTTGCCTAACCTGTCAGAGTGCCTAATCTTGTGGTTATAATGTACAATGAAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
CDS-3UTR CAA 90 bp GTACCATCATTAAATAAGGTGGGACACCATATGAATTTCATTGCACTGGAAGAACTTGACATGAGAAATTaGACAGCTCGATCATGGCAT +
Preference number: 5 (lower is better)
Translates to: VPSLNKVGHHMNFIALEELDMRN*TARSWH
Trigger: ATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAG...TTCTTCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS-3UTR CAA 90 bp TTACAGCTATGTGTTCTTTTGGATTTGGTCCAAAGAAACCTGAGTCTGTTTCCATGGCAACTTCTTGAATaGAAGTACTTCAGCAGATCT +
Preference number: 5 (lower is better)
Translates to: LQLCVLLDLVQRNLSLFPWQLLE*KYFSRS
Trigger: AGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCCA...TGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS TCA 72 bp CTGCTGCAGGGCTCGCTATGTGGAGACGTGTTTCTTTaGGAGGTAGTATCAACCGCCGCAGATGCTGGCTCA +
Preference number: 6 (lower is better)
Translates to: LLQGSLCGDVFL*EVVSTAADAGS
Trigger: TGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp ACTGCTGCAGGGCTCGCTATGTGGAGACGTGTTTCTTaGAGAGGTAGTATCAACCGCCGCAGATGCTGGCTC +
Preference number: 6 (lower is better)
Translates to: TAAGLAMWRRVS*RGSINRRRCWL
Trigger: GAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGCAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 90 bp TACCGAATCACTGCTGCAGGGCTCGCTATGTGGAGACGTGTTTCTTaGAGAGGTAGTATCAACCGCCGCAGATGCTGGCTCACCCTCACT +
Preference number: 6 (lower is better)
Translates to: YRITAAGLAMWRRVS*RGSINRRRCWLTLT
Trigger: AGTGAGGGTGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAACACGTCTCCACATAGCGAGCCCTGCAGCAGTGATTCGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS TCA 72 bp CAGCCTGCTTCCAACGCTCGTTGTCTAAGAGGAGGCTaGGCTTGGTCCGCCTCTCTTCATGAAACCTGTTCA +
Preference number: 6 (lower is better)
Translates to: QPASNARCLRGG*AWSASLHETCS
Trigger: TGAACAGGTTTCATGAAGAGAGGCGGACCAAGCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 72 bp TCTGTGTCCAAGGAGCTGTCCTTCCCAGCGCTCCTCTaGTGTGGGATCTCTTCCAATTCTCTAGTCCTTTGG +
Preference number: 6 (lower is better)
Translates to: SVSKELSFPALL*CGISSNSLVLW
Trigger: CCAAAGGACTAGAGAATTGGAAGAGATCCCACAGCAGAGGAGCGCTGGGAAGGACAGCTCCTTGGACACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp AATTCTGCAGGAACATCAGCCTGCTTCCAACGCTCGTaGTCTAAGAGGAGGCTGAGCTTGGTCCGCCTCTCT +
Preference number: 6 (lower is better)
Translates to: NSAGTSACFQRS*SKRRLSLVRLS
Trigger: AGAGAGGCGGACCAAGCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCAGGCTGATGTTCCTGCAGAATT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 72 bp CACAAAGCTGTGATCCCAAATGCCGGAAGCTGTGAATaGCCTGAAGCTCCTGCTGCAGAACCTCTTGAGTTG +
Preference number: 6 (lower is better)
Translates to: HKAVIPNAGSCE*PEAPAAEPLEL
Trigger: CAACTCAAGAGGTTCTGCAGCAGGAGCTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCACAGCTTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 72 bp TATTTGCTTGGCTCTGAAGGGCCCCAAGCAGTGACGTaGTCTTCCTCCCACAGATCTGTTCAGTGTCCACTA +
Preference number: 6 (lower is better)
Translates to: YLLGSEGPQAVT*SSSHRSVQCPL
Trigger: TAGTGGACACTGAACAGATCTGTGGGAGGAAGAGCACGTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 72 bp CCTGTGGGTTCCTTGGGACACACATCTGGCAGTGACTaGACAGGTCGAATGTGTTTTGTTGGATCTACCTCT +
Preference number: 6 (lower is better)
Translates to: PVGSLGHTSGSD*TGRMCFVGSTS
Trigger: AGAGGTAGATCCAACAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAACCCACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS CAA 72 bp TCCGCCTCTCTTCATGAAACCTGTTCACAAACTTATTaGCTTGGCTCTGAAGGGCCCCAAGCAGTGACGTGC +
Preference number: 6 (lower is better)
Translates to: SASLHETCSQTY*LGSEGPQAVTC
Trigger: GCACGTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACAGGTTTCATGAAGAGAGGCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS TCA 72 bp ATCACCTGTGGGTTCCTTGGGACACACATCTGGCAGTaGCTGCACAGGTCGAATGTGTTTTGTTGGATCTAC +
Preference number: 6 (lower is better)
Translates to: ITCGFLGTHIWQ*LHRSNVFCWIY
Trigger: GTAGATCCAACAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006221.14
CDS GCA 72 bp ACTGTGGGTTCCTTGGGACACACATCTGGCAGTGACTaGACAGGTCGAATGTGTTTTGTTGGATCTACCTCT +
Preference number: 6 (lower is better)
Translates to: TVGSLGHTSGSD*TGRMCFVGSTS
Trigger: AGAGGTAGATCCAACAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAACCCACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109578.8
CDS TCA 72 bp TGTAACTGTGGGTTCCTTGGGACACACATCTGGCAGTaGCTGCACAGGTCGAATGTGTTTTGTTGGATCTAC +
Preference number: 6 (lower is better)
Translates to: CNCGFLGTHIWQ*LHRSNVFCWIY
Trigger: GTAGATCCAACAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAACCCACAGTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109578.8
CDS GCA 72 bp ATGGCTCAGCTTTTCCTGAAGCAACTTGGAAGAAGCTaGGTCGCGACTTCCTTTCCCACCAGCAGTATTAAA +
Preference number: 6 (lower is better)
Translates to: MAQLFLKQLGRS*VATSFPTSSIK
Trigger: TTTAATACTGCTGGTGGGAAAGGAAGTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CCA 72 bp GTTTCTTTGAGAGGTAGTATCAACCGCCGCAGATGCTaGCTCACCCTCACTGAAAGCATCACTTATGAACCA +
Preference number: 6 (lower is better)
Translates to: VSLRGSINRRRC*LTLTESITYEP
Trigger: TGGTTCATAAGTGATGCTTTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCAAAGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp GCACCAGCTCCAAGAACTAACTGGCAACTTCTTGAATaGAAGTACTTCAGCAGATCTGTCAGGCGAGTGAGC +
Preference number: 6 (lower is better)
Translates to: APAPRTNWQLLE*KYFSRSVRRVS
Trigger: GCTCACTCGCCTGACAGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS GCA 72 bp ATCTCTATACCTCCTGGAGGAGCACACGCTGATGTCTaGTCCTTGCTGGATGAAGAATCAGTAGTACATTCT +
Preference number: 6 (lower is better)
Translates to: ISIPPGGAHADV*SLLDEESVVHS
Trigger: AGAATGTACTACTGATTCTTCATCCAGCAAGGAGCAGACATCAGCGTGTGCTCCTCCAGGAGGTATAGAGAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CCA 72 bp CTTATTAACAGCAAGACGGTTCCGACAACTGCATACTaGTGTCCCTCAACAACAAGAACATCAGCTGGCTTC +
Preference number: 6 (lower is better)
Translates to: LINSKTVPTTAY*CPSTTRTSAGF
Trigger: GAAGCCAGCTGATGTTCTTGTTGTTGAGGGACACCAGTATGCAGTTGTCGGAACCGTCTTGCTGTTAATAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp TGCCCTGAAGCTCCTGCTGCAGAACCTCTTGAGTTGTaGCTATTAAGTCCAACGCTCCAACAAATTCAGAAG +
Preference number: 6 (lower is better)
Translates to: CPEAPAAEPLEL*LLSPTLQQIQK
Trigger: CTTCTGAATTTGTTGGAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGCAGCAGGAGCTTCAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp GAATGCCCTGAAGCTCCTGCTGCAGAACCTCTTGAGTaGTTGCTATTAAGTCCAACGCTCCAACAAATTCAG +
Preference number: 6 (lower is better)
Translates to: ECPEAPAAEPLE*LLLSPTLQQIQ
Trigger: CTGAATTTGTTGGAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGCAGCAGGAGCTTCAGGGCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS TCA 72 bp AATTCAGAAGTAGATAACAACACCTGCACTGTAGGCTaGGTTTGGTGTACAGTGGCCATTAACTTCAGTTTA +
Preference number: 6 (lower is better)
Translates to: NSEVDNNTCTVG*VWCTVAINFSL
Trigger: TAAACTGAAGTTAATGGCCACTGTACACCAAACTCAGCCTACAGTGCAGGTGTTGTTATCTACTTCTGAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp TCAAGAAAACCGTCCTTTGCTCTTGACATGAGAAATTaGACAGCTCGATCATGGCATACATCTGAAGCATTA +
Preference number: 6 (lower is better)
Translates to: SRKPSFALDMRN*TARSWHTSEAL
Trigger: TAATGCTTCAGATGTATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGTTTTCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 72 bp CAGATCAATCCACTGGGGAAAATTCAACATTCTCATTaGATCTGCAAGCTTTACAACAACGTCTGTGTCTAT +
Preference number: 6 (lower is better)
Translates to: QINPLGKIQHSH*ICKLYNNVCVY
Trigger: ATAGACACAGACGTTGTTGTAAAGCTTGCAGATCAAATGAGAATGTTGAATTTTCCCCAGTGGATTGATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS CAA 90 bp TTCAATTTTTCAAGAAAACCGTCCTTTGCTCTTGACATGAGAAATTaGACAGCTCGATCATGGCATACATCTGAAGCATTACACAGTAAC +
Preference number: 6 (lower is better)
Translates to: FNFSRKPSFALDMRN*TARSWHTSEALHSN
Trigger: GTTACTGTGTAATGCTTCAGATGTATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGTTTTCTTGAAAAATTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2
CDS TCA 72 bp AGATCAATCCACTGGGGAAAATTCAACATTCTCATTTaGTCTGCAAGCTTTACAACAACGTCTGTGTCTATT +
Preference number: 6 (lower is better)
Translates to: RSIHWGKFNILI*SASFTTTSVSI
Trigger: AATAGACACAGACGTTGTTGTAAAGCTTGCAGATCAAATGAGAATGTTGAATTTTCCCCAGTGGATTGATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006221.14
ENSMUST00000109578.8
ENSMUST00000132017.2