Pregenerated sensors for VPS4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031913Ensembl transcript IDs: ENSMUST00000034388.10
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTaGGCTCAGTTCTCAGGTGAAGGCAGCGATAAAGACCTGCCTGTT | + |
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Preference number: 1 (lower is better) Translates to: GKGFIRHLQDRTSRG*AQFSGEGSDKDLPV Trigger: AACAGGCAGGTCTTTATCGCTGCCTTCACCTGAGAACTGAGCCCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR TCA 90 bp | AAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTAGGTTaGCAGCCAGGCAGTAGAGGAAATACTATTGACTTCACGACTTCA | + |
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Preference number: 1 (lower is better) Translates to: KHLCSWGGPFFILLG*QPGSRGNTIDFTTS Trigger: TGAAGTCGTGAAGTCAATAGTATTTCCTCTACTGCCTGGCTGTCAACCTAGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTAGCCCTGCCTGGCCACTaGTGTACGAAGTCCCATGAA | + |
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Preference number: 2 (lower is better) Translates to: VSYMVKHLCSWGGPFFILALPGH*CTKSHE Trigger: TTCATGGGACTTCGTACACCAGTGGCCAGGCAGGGC...TAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR CCA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTACTTCAGGCCCTGCCTaGCCACTGGTGTACGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: VLHGEASLQLGRPLLHPTTSGPA*PLVYEV Trigger: GACTTCGTACACCAGTGGCCAGGCAGGGCCTGAAGT...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR GCA 90 bp | CTGCAAGGAGGACCTGAAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGGCTTTATGGTGAAGCATCTCTaGAGCTGGGGAGGCCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LQGGPEAPDASLGEWDGFMVKHL*SWGGPF Trigger: GAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCAT...AAAGCCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGGTCCTCCTTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR GCA 90 bp | CCTGAAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCCACGACTTCAGGCCCTaGCTGGCCACTGGTGTACGA | + |
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Preference number: 2 (lower is better) Translates to: PEAPDASLGEWDGFSYFTHDFRP*LATGVR Trigger: TCGTACACCAGTGGCCAGGCAGGGCCTGAAGTCGTG...GGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR TCA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCAAGTGTCCTACATGGTaGAGCATCTCTGCAGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFKCPTW*SISAAG Trigger: CCCAGCTGCAGAGATGCTTCACCATGTAGGACACTT...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR GCA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGTCCAGTAGTGAAGTATaGAGAGCCAGTCTCAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWSSSEV*RASLKC Trigger: ACACTTGAGACTGGCTCTGCATACTTCACTACTGGA...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR TCA 72 bp | GAAGTATGCAGAGCCAGTCTCAAGTGTCCTACATGGTaGAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: EVCRASLKCPTW*SISAAGEAPSS Trigger: TGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACACTTGAGACTGGCTCTGCATACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR TCA 72 bp | TGTTCACAGAAGCTGTCAGCTCCTGCAAGGAGGACCTaGAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGG | + |
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Preference number: 3 (lower is better) Translates to: CSQKLSAPARRT*SSRCKLRRVGW Trigger: CCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGGTCCTCCTTGCAGGAGCTGACAGCTTCTGTGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR GCA 72 bp | AGCCAGTCTCAAGTGTCCTACATGGTGAAGCATCTCTaGAGCTGGGGAGGCCCCTTCTTCATCCTACTAGGT | + |
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Preference number: 3 (lower is better) Translates to: SQSQVSYMVKHL*SWGGPFFILLG Trigger: ACCTAGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACACTTGAGACTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR-3UTR CAA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTGTAGAGGAAATACTATaGACTTCACGACTTCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: VLHGEASLQLGRPLLHPTVEEIL*TSRLQA Trigger: GGCCTGAAGTCGTGAAGTCAATAGTATTTCCTCTAC...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| 3UTR TCA 72 bp | TCAGGCCCTGCCTGGCCACTGGTGTACGAAGTCCCATaGATTTTCTCCAGTCAGACTCTCAATTTCATTATC | + |
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Preference number: 3 (lower is better) Translates to: SGPAWPLVYEVP*IFSSQTLNFII Trigger: GATAATGAAATTGAGAGTCTGACTGGAGAAAATTCATGGGACTTCGTACACCAGTGGCCAGGCAGGGCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTTGGCCAGGTAGGACTTaGCTGTGCCTGGGGGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VLHGEASLQLGRPLLHPTWPGRT*LCLGAQ Trigger: TTGGGCCCCCAGGCACAGGCAAGTCCTACCTGGCCA...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | GTGTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACCTCCTCCTGATGGCTaGATCCAACACCCAGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: VSYMVKHLCSWGGPFFILPPPDG*IQHPGD Trigger: ATCCCCTGGGTGTTGGATTCAGCCATCAGGAGGAGG...TAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | CTGCAAGGAGGACCTGAAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGGCTTTGGTAGGACTTGCCTGTaGCTGGGGGCCCAAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: LQGGPEAPDASLGEWDGFGRTCL*LGAQRG Trigger: TCCTCTTTGGGCCCCCAGGCACAGGCAAGTCCTACC...AAAGCCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGGTCCTCCTTGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTCTGTTGCCACGGCTTTaGCCAGGTAGGACTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: VLHGEASLQLGRPLLHPTLLPRL*PGRTCL Trigger: CAGGCAAGTCCTACCTGGCCAAAGCCGTGGCAACAG...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTGTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTGGTAGAGACGGAGTaGCTCCTCGTAGTTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: VSYMVKHLCSWGGPFFILLVETE*LLVVLG Trigger: GCCAAGAACTACGAGGAGGCACTCCGTCTCTACCAG...TAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | CCAGCAGAGGCTGGGCTCAGTTCTCAGGTGAAGGCAGCGATAAAGACCTGCCTGCCCTTGCCTTCACTCTaGTTCTCTTTGACTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PAEAGLSSQVKAAIKTCLPLPSL*FSLTGF Trigger: GAAGCCAGTCAAAGAGAACCAGAGTGAAGGCAAGGG...CAGGCAGGTCTTTATCGCTGCCTTCACCTGAGAACTGAGCCCAGCCTCTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | CTGCAAGGAGGACCTGAAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGGCTTTTTGCGGGCCAGCTCGTaGATGTTAGCATCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: LQGGPEAPDASLGEWDGFLRASS*MLASVR Trigger: CCTCACAGATGCTAACATTCACGAGCTGGCCCGCAA...AAAGCCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGGTCCTCCTTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTGTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTAAGTAGCCTTCTGTCTTaGGGGCCAGCTCGTGAATGT | + |
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Preference number: 4 (lower is better) Translates to: VSYMVKHLCSWGGPFFILSSLLS*GPAREC Trigger: ACATTCACGAGCTGGCCCGCAAGACAGAAGGCTACT...TAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCTCCAAGTCATCTCTATaGCCCCTGGATCTCCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFSKSSL*PLDLPE Trigger: CTCCGGGAGATCCAGGGGCCATAGAGATGACTTGGA...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTGTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTATGCACTTTGCTCGAATaGTCTCCTTGGCCTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VSYMVKHLCSWGGPFFILCTLLE*SPWPCH Trigger: GTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCA...TAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTGTACTGCATGCACTTTaGTCGAATGCTCTCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: VLHGEASLQLGRPLLHPTVLHAL*SNALLG Trigger: GCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTAC...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCATGATGGAAGGCTTATaGTGCCGGGCCAGCTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFMMEGL*CRASSN Trigger: GTTTGAGCTGGCCCGGCAGCATAAGCCTTCCATCAT...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | CCAGCAGAGGCTGGGCTCAGTTCTCAGGTGAAGGCAGCGATAAAGACCTGCCTGTTATTCCCCACTCCTTaGATCTGGACCAAGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: PAEAGLSSQVKAAIKTCLLFPTP*IWTKNS Trigger: AGAGTTCTTGGTCCAGATGCAAGGAGTGGGGAATAA...CAGGCAGGTCTTTATCGCTGCCTTCACCTGAGAACTGAGCCCAGCCTCTGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCTTTCAAACCTCCTCCTaGTGGCTGAATCCAACACCC | + |
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Preference number: 4 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFFQTSS*WLNPTP Trigger: GGGTGTTGGATTCAGCCATCAGGAGGAGGTTTGAAA...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTGGCCTTGTCACTGTGTaGTTCATATTTGATGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: VLHGEASLQLGRPLLHPTGLVTV*FIFDGV Trigger: CACGCCATCAAATATGAAGCACACAGTGACAAGGCC...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | CCTGAAGCTCCAGATGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCGCATCTGTGAGGTTGTaGGGTGTGCTTCCCAGATGT | + |
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Preference number: 4 (lower is better) Translates to: PEAPDASLGEWDGFSYFTASVRL*GVLPRC Trigger: ACATCTGGGAAGCACACCTCACAACCTCACAGATGC...GGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCATCTGGAGCTTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | CCAGTAGTGAAGTATGCAGAGCCAGTCTCAAGTGTCCTACATGGTGAAGCATCTATGGAAGGCTTATGCTaGCGGGCCAGCTCAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: PVVKYAEPVSSVLHGEASMEGLC*RASSNR Trigger: CCTGTTTGAGCTGGCCCGGCAGCATAAGCCTTCCAT...AGATGCTTCACCATGTAGGACACTTGAGACTGGCTCTGCATACTTCACTACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | CCAGTAGTGAAGTATGCAGAGCCAGTCTCAAGTGTCCTACATGGTGAAGCATCTCATCTCTATGGCCCCTaGATCTCCCGGAGAACATGG | + |
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Preference number: 4 (lower is better) Translates to: PVVKYAEPVSSVLHGEASHLYGP*ISRRTW Trigger: CCATGTTCTCCGGGAGATCCAGGGGCCATAGAGATG...AGATGCTTCACCATGTAGGACACTTGAGACTGGCTCTGCATACTTCACTACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCTGTGTGCTTCATATTTaGTGGCGTGGAGGAAATACT | + |
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Preference number: 4 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFCVLHI*WRGGNT Trigger: AGTATTTCCTCCACGCCATCAAATATGAAGCACACA...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGGGCCACACACCTTCTTaGAGTGTGTTGCTGACTGTA | + |
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Preference number: 4 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWGHTPS*SVLLTV Trigger: TACAGTCAGCAACACACTTCAAGAAGGTGTGTGGCC...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | CCAGTAGTGAAGTATGCAGAGCCAGTCTCAAGTGTCCTACATGGTGAAGCATCTTTGTCACCAGATCGATaGCTTTCTGGAGGGTTGACG | + |
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Preference number: 4 (lower is better) Translates to: PVVKYAEPVSSVLHGEASLSPDR*LSGGLT Trigger: CGTCAACCCTCCAGAAAGCCATCGATCTGGTGACAA...AGATGCTTCACCATGTAGGACACTTGAGACTGGCTCTGCATACTTCACTACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | CCAGTAGTGAAGTATGCAGAGCCAGTCTCAAGTGTCCTACATGGTGAAGCATCTCTCGAATGCTCTCCTTaGCCTTGTCACTGTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: PVVKYAEPVSSVLHGEASLECSP*PCHCVL Trigger: AAGCACACAGTGACAAGGCCAAGGAGAGCATTCGAG...AGATGCTTCACCATGTAGGACACTTGAGACTGGCTCTGCATACTTCACTACTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACAACGGGCCGCTTCCTCTaGCAATGGGATATAAATTCG | + |
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Preference number: 4 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTTGRFL*QWDINS Trigger: CGAATTTATATCCCATTGCCAGAGGAAGCGGCCCGT...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR TCA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACACTCATTTTCATTCCGTaGCCCACAGAGGGAATCTAC | + |
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Preference number: 4 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTLIFIP*PTEGIY Trigger: GTAGATTCCCTCTGTGGGTCACGGAATGAAAATGAG...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACAGCTCTGTCTAGGTACTaGATGCACTTTGCTCGAATG | + |
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Preference number: 4 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTALSRY*MHFARM Trigger: CATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGC...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR GCA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGTGTCTAGGTACTGCATaGACTTTGCTCGAATGCTCT | + |
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Preference number: 4 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWCLGTA*TLLECS Trigger: AGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACA...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | GATGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCATCATATTTGATGGCGTaGAGGAAATACTCCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: DASLGEWDGFSYFTTVSSSYLMA*RKYSTA Trigger: TGCTGTGGAGTATTTCCTCCACGCCATCAAATATGA...TGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CCA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGCGCTTCCTCTGGCAATaGGATATAAATTCGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWRFLWQ*DINSLF Trigger: GAAAAGCGAATTTATATCCCATTGCCAGAGGAAGCG...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | CCAGCAGAGGCTGGGCTCAGTTCTCAGGTGAAGGCAGCGATAAAGACCTGCCTGACACCCAGGGGATGTTaGTGGCACCAAGAACAAGAG | + |
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Preference number: 5 (lower is better) Translates to: PAEAGLSSQVKAAIKTCLTPRGC*WHQEQE Trigger: CTCTTGTTCTTGGTGCCACAAACATCCCCTGGGTGT...CAGGCAGGTCTTTATCGCTGCCTTCACCTGAGAACTGAGCCCAGCCTCTGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS TCA 90 bp | TGGCTGCATGAGGGAGTCCCGCACAATGATGCTGATATCTGCTCCTaGGTAGCCTTCTGTCTTGCGGGCCAGCTCGTGAATGTTAGCATC | + |
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Preference number: 5 (lower is better) Translates to: WLHEGVPHNDADICS*VAFCLAGQLVNVSI Trigger: GATGCTAACATTCACGAGCTGGCCCGCAAGACAGAAGGCTACTCAGGAGCAGATATCAGCATCATTGTGCGGGACTCCCTCATGCAGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCGCTCGAATGCTCTCCTaGGCCTTGTCACTGTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFARMLS*ALSLCA Trigger: AGCACACAGTGACAAGGCCAAGGAGAGCATTCGAGC...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | GTCCTACATGGTGAAGCATCTCTGCAGCTGGGGAGGCCCCTTCTTCATCCTACTGGTACTGCATGCACTTaGCTCGAATGCTCTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: VLHGEASLQLGRPLLHPTGTACT*LECSPW Trigger: CCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACC...AGTAGGATGAAGAAGGGGCCTCCCCAGCTGCAGAGATGCTTCACCATGTAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CCA 90 bp | AGAGACGGAGTGCCTCCTCGTAGTTCTTGGCTTTATCCTCTTCTGTaGCTTTTGTCACCAGATCGATGGCTTTCTGGAGGGTTGACGTTG | + |
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Preference number: 5 (lower is better) Translates to: RDGVPPRSSWLYPLL*LLSPDRWLSGGLTL Trigger: CAACGTCAACCCTCCAGAAAGCCATCGATCTGGTGACAAAAGCCACAGAAGAGGATAAAGCCAAGAACTACGAGGAGGCACTCCGTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | GCGATAAAGACCTGCCTGTTTGCCGTCTCTCCTGATGGAAACGGCATCGTGTTCAAAATCACAGCTTCTTaGAGAGCCTCTTTAGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: AIKTCLFAVSPDGNGIVFKITAS*RASLAP Trigger: GGGGGCTAAAGAGGCTCTCAAAGAAGCTGTGATTTT...GAACACGATGCCGTTTCCATCAGGAGAGACGGCAAACAGGCAGGTCTTTATCGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CCA 90 bp | ATCCATCCAAGTCATCTCTATGGCCCCTGGATCTCCCGGAGAACATaGGGTCAGAAGATCATCAATCATAACGCTAGGGTTGGTTCGAGA | + |
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Preference number: 5 (lower is better) Translates to: IHPSHLYGPWISRRT*GQKIINHNARVGSR Trigger: TCTCGAACCAACCCTAGCGTTATGATTGATGATCTTCTGACCCCATGTTCTCCGGGAGATCCAGGGGCCATAGAGATGACTTGGATGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | GATGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCATCACTGTCACTACCCTaGCCTTCACTCTGGTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: DASLGEWDGFSYFTTVSSSLSLP*PSLWFS Trigger: AGAGAACCAGAGTGAAGGCAAGGGTAGTGACAGTGA...TGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS GCA 90 bp | TTCGTAAATAATCCTTCAGCTTCTCCGCTCTGTCTAGGTACTGCATaGACTTTGCTCGAATGCTCTCCTTGGCCTTGTCACTGTGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: FVNNPSASPLCLGTA*TLLECSPWPCHCVL Trigger: AAGCACACAGTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGCGGAGAAGCTGAAGGATTATTTACGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGATGCTCTCCTTGGCCTaGTCACTGTGTGCTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWMLSLA*SLCASY Trigger: ATATGAAGCACACAGTGACAAGGCCAAGGAGAGCAT...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACATCACTCTGGTTCTCTTaGACTGGCTTCTTGCCATGT | + |
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Preference number: 5 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTSLWFS*TGFLPC Trigger: ACATGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGA...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGAGCTCAAACAGGTTCTaGACTAGCTTCTCGCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWSSNRF*TSFSLS Trigger: GGAAAGCGAGAAGCTAGTCAAGAACCTGTTTGAGCT...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACAACCAAGAACTCTGTTTaGATCCTACGAGCGGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTTKNSV*ILRAAS Trigger: TGAAGCCGCTCGTAGGATCAAAACAGAGTTCTTGGT...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | AATAAGGGAAAAGGGTTTATTAGACATCTCCAGGACAGGACCAGCAGAGGCTGGATTATTCCCCACTCCTaGCATCTGGACCAAGAACTC | + |
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Preference number: 5 (lower is better) Translates to: NKGKGFIRHLQDRTSRGWIIPHS*HLDQEL Trigger: GAGTTCTTGGTCCAGATGCAAGGAGTGGGGAATAAT...CCAGCCTCTGCTGGTCCTGTCCTGGAGATGTCTAATAAACCCTTTTCCCTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS-3UTR CAA 90 bp | TGCAAGCTTAGGAGAGTGGGATGGCTTTTCCTACTTTACCACAGTCAGCTCACATCTTTGACTGGCTTCTaGCCATGTTTCTCTTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: CKLRRVGWLFLLYHSQLTSLTGF*PCFSLF Trigger: AAACAAAGAGAAACATGGCAAGAAGCCAGTCAAAGA...TGTGAGCTGACTGTGGTAAAGTAGGAAAAGCCATCCCACTCTCCTAAGCTTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CCA 72 bp | TGCCACGGCTTTGGCCAGGTAGGACTTGCCTGTGCCTaGGGGCCCAAAGAGGAGTATGCCTCGCCAAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: CHGFGQVGLACA*GPKEEYASPRS Trigger: ACTCCTTGGCGAGGCATACTCCTCTTTGGGCCCCCAGGCACAGGCAAGTCCTACCTGGCCAAAGCCGTGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS TCA 72 bp | GAGGGAGTCCCGCACAATGATGCTGATATCTGCTCCTaGGTAGCCTTCTGTCTTGCGGGCCAGCTCGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: EGVPHNDADICS*VAFCLAGQLVN Trigger: ATTCACGAGCTGGCCCGCAAGACAGAAGGCTACTCAGGAGCAGATATCAGCATCATTGTGCGGGACTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 72 bp | TCAGCTTCTCCGCTCTGTCTAGGTACTGCATGCACTTaGCTCGAATGCTCTCCTTGGCCTTGTCACTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SASPLCLGTACT*LECSPWPCHCV Trigger: CACACAGTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGCGGAGAAGCTGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 90 bp | CCCGGAGAACATGGGGTCAGAAGATCATCAATCATAACGCTAGGGTaGGTTCGAGAAGGGCCACACACCTTCTTGAAGTGTGTTGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: PGEHGVRRSSIITLG*VREGPHTFLKCVAD Trigger: GTCAGCAACACACTTCAAGAAGGTGTGTGGCCCTTCTCGAACCAACCCTAGCGTTATGATTGATGATCTTCTGACCCCATGTTCTCCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 72 bp | ACGCTAGGGTTGGTTCGAGAAGGGCCACACACCTTCTaGAAGTGTGTTGCTGACTGTACTTTTCTGACTGGC | + |
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Preference number: 6 (lower is better) Translates to: TLGLVREGPHTF*KCVADCTFLTG Trigger: GCCAGTCAGAAAAGTACAGTCAGCAACACACTTCAAGAAGGTGTGTGGCCCTTCTCGAACCAACCCTAGCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 90 bp | TCCGCTCTGTCTAGGTACTGCATGCACTTTGCTCGAATGCTCTCCTaGGCCTTGTCACTGTGTGCTTCATATTTGATGGCGTGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SALSRYCMHFARMLS*ALSLCASYLMAWRK Trigger: TTTCCTCCACGCCATCAAATATGAAGCACACAGTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGCGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS GCA 72 bp | CCGCTCTGTCTAGGTACTGCATGCACTTTGCTCGAATaGTCTCCTTGGCCTTGTCACTGTGTGCTTCATATT | + |
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Preference number: 6 (lower is better) Translates to: PLCLGTACTLLE*SPWPCHCVLHI Trigger: AATATGAAGCACACAGTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGCGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CCA 72 bp | CCGAAACATTTGGGCACGGGCCGCTTCCTCTGGCAATaGGATATAAATTCGCTTTTCAAACCTCCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: PKHLGTGRFLWQ*DINSLFKPPPD Trigger: ATCAGGAGGAGGTTTGAAAAGCGAATTTATATCCCATTGCCAGAGGAAGCGGCCCGTGCCCAAATGTTTCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CCA 72 bp | AGTCATCTCTATGGCCCCTGGATCTCCCGGAGAACATaGGGTCAGAAGATCATCAATCATAACGCTAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: SHLYGPWISRRT*GQKIINHNARV Trigger: AACCCTAGCGTTATGATTGATGATCTTCTGACCCCATGTTCTCCGGGAGATCCAGGGGCCATAGAGATGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 72 bp | CATGGGGTCAGAAGATCATCAATCATAACGCTAGGGTaGGTTCGAGAAGGGCCACACACCTTCTTGAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: HGVRRSSIITLG*VREGPHTFLKC Trigger: ACACTTCAAGAAGGTGTGTGGCCCTTCTCGAACCAACCCTAGCGTTATGATTGATGATCTTCTGACCCCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS CAA 90 bp | AATAATCCTTCAGCTTCTCCGCTCTGTCTAGGTACTGCATGCACTTaGCTCGAATGCTCTCCTTGGCCTTGTCACTGTGTGCTTCATATT | + |
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Preference number: 6 (lower is better) Translates to: NNPSASPLCLGTACT*LECSPWPCHCVLHI Trigger: AATATGAAGCACACAGTGACAAGGCCAAGGAGAGCATTCGAGCAAAGTGCATGCAGTACCTAGACAGAGCGGAGAAGCTGAAGGATTATT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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| CDS TCA 72 bp | GATATAAATTCGCTTTTCAAACCTCCTCCTGATGGCTaGATCCAACACCCAGGGGATGTTTGTGGCACCAAG | + |
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Preference number: 6 (lower is better) Translates to: DINSLFKPPPDG*IQHPGDVCGTK Trigger: CTTGGTGCCACAAACATCCCCTGGGTGTTGGATTCAGCCATCAGGAGGAGGTTTGAAAAGCGAATTTATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034388.10 |
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