RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VPS36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031479

Ensembl transcript IDs: ENSMUST00000033866.9

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCTCCACCTCATCCAGACAGTGTCCTCAAACTCCCAGATAGTGTaGCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACGCTATCACCA +
Preference number: 1 (lower is better)
Translates to: SLHLIQTVSSNSQIV*LRIPPCGSKATLSP
Trigger: TGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACACTGTCTGGATGAGGTGGAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 90 bp CCCTGGCTTGCAGCTGAGGACACTGGCACTTCTCCACAGGGCATCTaGAGTAGCCTCCACCTCATCCAGACAGTGTCCTCAAACTCCCAG +
Preference number: 1 (lower is better)
Translates to: PWLAAEDTGTSPQGI*SSLHLIQTVSSNSQ
Trigger: CTGGGAGTTTGAGGACACTGTCTGGATGAGGTGGAGGCTACTGCAGATGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 90 bp GGAAAACCCACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATACTaGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGG +
Preference number: 1 (lower is better)
Translates to: GKPTQKALATAGSRY*RTEAKAITVQESVR
Trigger: CCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 90 bp GTCACCACAACCAGTGACAGACTGGAAAACCCACACAAAAGGCCTTaGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCA +
Preference number: 1 (lower is better)
Translates to: VTTTSDRLENPHKRP*PQRARDTGGQRQRP
Trigger: TGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 90 bp GAGGTGATTAGGGAAGACCTAAGGTCACCACAACCAGTGACAGACTaGAAAACCCACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATA +
Preference number: 1 (lower is better)
Translates to: EVIREDLRSPQPVTD*KTHTKGLGHSGLEI
Trigger: TATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGACCTTAGGTCTTCCCTAATCACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 90 bp CCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTaGTTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTT +
Preference number: 1 (lower is better)
Translates to: PSCPSRTRPFRLPDL*LQLGVCLYSSLIPF
Trigger: AAATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 90 bp AAGTCTGCTTCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTaGAGTTTGATTTCAGTGCTGTTGATTCTTAAACTACAGTGTAGC +
Preference number: 1 (lower is better)
Translates to: KSASNAPKEEPGTAF*SLISVLLILKLQCS
Trigger: GCTACACTGTAGTTTAAGAATCAACAGCACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGAAGCAGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 90 bp CTAAAACAGATTATCAGTGACCTGTGGATTTTAAGATCCTTAGTTTaGCAAGAGGAATGTGCGTGCTTGCGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: LKQIISDLWILRSLV*QEECACLRVCVCVC
Trigger: ACACACACACACACACACACGCAAGCACGCACATTCCTCTTGTCAAACTAAGGATCTTAAAATCCACAGGTCACTGATAATCTGTTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 90 bp CTTAAACAAAATGATACTGCTGCAGGCTTTAAAGAATGCCACTCATaGAACTATCACTTAGAAACTAAACAGGACCTGAGGTGTAAATGC +
Preference number: 1 (lower is better)
Translates to: LKQNDTAAGFKECHS*NYHLETKQDLRCKC
Trigger: GCATTTACACCTCAGGTCCTGTTTAGTTTCTAAGTGATAGTTTCATGAGTGGCATTCTTTAAAGCCTGCAGCAGTATCATTTTGTTTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 90 bp AACATTTACAATTTGATGAGGTTTAGTCATGGCAAAATGATTACCTaGTCTATCCAAACATGCAACTTCACATCTTCTTCCTCCAAGGAC +
Preference number: 1 (lower is better)
Translates to: NIYNLMRFSHGKMIT*SIQTCNFTSSSSKD
Trigger: GTCCTTGGAGGAAGAAGATGTGAAGTTGCATGTTTGGATAGATCAGGTAATCATTTTGCCATGACTAAACCTCATCAAATTGTAAATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CAA 90 bp AAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCCCTGGCTaGCAGCTGAGGACACTGGCACTTCTCCACAGGGCATCTGCAGTA +
Preference number: 2 (lower is better)
Translates to: KAITVQESVRVGLPG*QLRTLALLHRASAV
Trigger: TACTGCAGATGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGGAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR GCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCCTGGTACGGCTTTCTaGAGTTTGATTTCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKPGTAF*SLISVL
Trigger: CAGCACTGAAATCAAACTGCAGAAAGCCGTACCAGG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR CCA 90 bp GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTAGTGTCGTGAGACCTTaGCAAAATGCAAGCTTATTG +
Preference number: 2 (lower is better)
Translates to: ALATAGSRYWRTEAKAITSVVRP*QNASLL
Trigger: CAATAAGCTTGCATTTTGCCAAGGTCTCACGACACT...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR CCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCAACCAGTGACAGACTaGAAAACCCACACAAAAGGC +
Preference number: 2 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKQPVTD*KTHTKG
Trigger: GCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR GCA 90 bp ATACTGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGTGCTTCCTTCATGTGTaGCTCCAAGGATGGGCACAT +
Preference number: 2 (lower is better)
Translates to: ILEDRGKGHHCPGKCQGRCFLHV*LQGWAH
Trigger: ATGTGCCCATCCTTGGAGGCACACATGAAGGAAGCA...CCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR GCA 90 bp GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGCTACAGTGTAGCTGTTaGTTCCTTCATGTGTGCCTC +
Preference number: 2 (lower is better)
Translates to: EVRQPTESSSNLEVVLARLQCSC*FLHVCL
Trigger: GAGGCACACATGAAGGAAGCAACAGCTACACTGTAG...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR CCA 90 bp TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCATAGGAATATGCGTCTaGTTGAGGCTGAGACTTCTT +
Preference number: 2 (lower is better)
Translates to: WRTEAKAITVQESVRVGLIGICV*LRLRLL
Trigger: AAGAAGTCTCAGCCTCAACCAGACGCATATTCCTAT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR GCA 90 bp GTGTCCTCAAACTCCCAGATAGTGTGCCTGCGCATCCCTCCCTGTGGCTCCAAGGAGACCTTGGCAAAATaGAAGCTTATTGACATAAAG +
Preference number: 2 (lower is better)
Translates to: VSSNSQIVCLRIPPCGSKETLAK*KLIDIK
Trigger: CTTTATGTCAATAAGCTTGCATTTTGCCAAGGTCTC...CTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR GCA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTGCATAACAGGTCCTTaGTCCCTCCTTCCCCGGTGT +
Preference number: 2 (lower is better)
Translates to: ARPVITTRGVSIQLFNSICITGP*SLLPRC
Trigger: ACACCGGGGAAGGAGGGAGCAAGGACCTGTTATGCA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR TCA 90 bp TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGCTTCCTCCAAGGACCTaGACTCAGGATCAAATTAAT +
Preference number: 2 (lower is better)
Translates to: SNAPKEEPGTAFCSLISVLPPRT*TQDQIN
Trigger: ATTAATTTGATCCTGAGTTCAGGTCCTTGGAGGAAG...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR CCA 90 bp GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGCATTCTTGGTTTATTTaGGTTTATCTCTTAGCTCAG +
Preference number: 2 (lower is better)
Translates to: ATLSPPFHLSSASEKHLLHSWFI*VYLLAQ
Trigger: CTGAGCTAAGAGATAAACCCAAATAAACCAAGAATG...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR TCA 90 bp AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATGGCAAAATGATTACCTaGTCTATCCAAACATGCAAC +
Preference number: 2 (lower is better)
Translates to: RQPTESSSNLEVVLARFYGKMIT*SIQTCN
Trigger: GTTGCATGTTTGGATAGATCAGGTAATCATTTTGCC...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR TCA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTCAAGGGTATTTTATTTaGTCTGGTAGAGGCATGCCT +
Preference number: 2 (lower is better)
Translates to: ARPVITTRGVSIQLFNSIQGYFI*SGRGMP
Trigger: AGGCATGCCTCTACCAGATCAAATAAAATACCCTTG...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 72 bp CTCATCCAGACAGTGTCCTCAAACTCCCAGATAGTGTaGCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACG +
Preference number: 3 (lower is better)
Translates to: LIQTVSSNSQIV*LRIPPCGSKAT
Trigger: CGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACACTGTCTGGATGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 72 bp AAACTCCCAGATAGTGTGCCTGCGCATCCCTCCCTGTaGCTCCAAGGCCACGCTATCACCACCCTTCCACCT +
Preference number: 3 (lower is better)
Translates to: KLPDSVPAHPSL*LQGHAITTLPP
Trigger: AGGTGGAAGGGTGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 72 bp ACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATACTaGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAA +
Preference number: 3 (lower is better)
Translates to: TQKALATAGSRY*RTEAKAITVQE
Trigger: TTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 72 bp ACCAGTGACAGACTGGAAAACCCACACAAAAGGCCTTaGCCACAGCGGGCTCGAGATACTGGAGGACAGAGG +
Preference number: 3 (lower is better)
Translates to: TSDRLENPHKRP*PQRARDTGGQR
Trigger: CCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 72 bp GCCCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTaGCCGACCTGTGATTACAACTCGGGGTGTGTCTAT +
Preference number: 3 (lower is better)
Translates to: ALHALPEPDLSD*PTCDYNSGCVY
Trigger: ATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CCA 72 bp AGGGAAGACCTAAGGTCACCACAACCAGTGACAGACTaGAAAACCCACACAAAAGGCCTTGGCCACAGCGGG +
Preference number: 3 (lower is better)
Translates to: REDLRSPQPVTD*KTHTKGLGHSG
Trigger: CCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGACCTTAGGTCTTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR-3UTR CAA 90 bp ACAGTGATGAGCACCAAGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTTGGAATATGCGTCTGGTaGAGGCTGAGACTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: TVMSTKSRAFVRPGLDWFGICVW*RLRLLG
Trigger: CCCAAGAAGTCTCAGCCTCAACCAGACGCATATTCC...AAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCTTGGTGCTCATCACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 72 bp CCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTaGTTACAACTCGGGGTGTGTCTATACAGCTCTTTA +
Preference number: 3 (lower is better)
Translates to: PSRTRPFRLPDL*LQLGVCLYSSL
Trigger: TAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 72 bp GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATaGTATACATATGAAGTCAGGCAACCTACTGAAAGC +
Preference number: 3 (lower is better)
Translates to: AYGLPEFEVTSP*YTYEVRQPTES
Trigger: GCTTTCAGTAGGTTGCCTGACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 72 bp GGACCTAGCCCTCTCCTTTTCCAAGGGTATTTTATTTaGTCTGGTAGAGGCATGCCTAAGTCTGCTTCCAAC +
Preference number: 3 (lower is better)
Translates to: GPSPLLFQGYFI*SGRGMPKSASN
Trigger: GTTGGAAGCAGACTTAGGCATGCCTCTACCAGATCAAATAAAATACCCTTGGAAAAGGAGAGGGCTAGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR GCA 72 bp TATCACTTAGAAACTAAACAGGACCTGAGGTGTAAATaGATAACAGGTCCTTGCTCCCTCCTTCCCCGGTGT +
Preference number: 3 (lower is better)
Translates to: YHLETKQDLRCK*ITGPCSLLPRC
Trigger: ACACCGGGGAAGGAGGGAGCAAGGACCTGTTATGCATTTACACCTCAGGTCCTGTTTAGTTTCTAAGTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 72 bp AATGATACTGCTGCAGGCTTTAAAGAATGCCACTCATaGAACTATCACTTAGAAACTAAACAGGACCTGAGG +
Preference number: 3 (lower is better)
Translates to: NDTAAGFKECHS*NYHLETKQDLR
Trigger: CCTCAGGTCCTGTTTAGTTTCTAAGTGATAGTTTCATGAGTGGCATTCTTTAAAGCCTGCAGCAGTATCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR TCA 72 bp CTTACAACCAATCCAAGTGCTAAAACAGATTATCAGTaGCCTGTGGATTTTAAGATCCTTAGTTTGACAAGA +
Preference number: 3 (lower is better)
Translates to: LTTNPSAKTDYQ*PVDFKILSLTR
Trigger: TCTTGTCAAACTAAGGATCTTAAAATCCACAGGTCACTGATAATCTGTTTTAGCACTTGGATTGGTTGTAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp CGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGCCTTCTCCAGGAGGCCGCTaGTCCACACGAAGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: RYHHPSTSAQPPKSTFWPSPGGR*STRSGP
Trigger: TGGACCGCTTCGTGTGGACCAGCGGCCTCCTGGAGA...AGGCCAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR TCA 90 bp GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTC +
Preference number: 4 (lower is better)
Translates to: ATLSPPFHLSSASEKHLLGAGCR*TTILAL
Trigger: GAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCGCACCCCGCGCTGCTaGATAACCAGGGTCTCGTTG +
Preference number: 4 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKRTPRC*ITRVSL
Trigger: CAACGAGACCCTGGTTATCCAGCAGCGCGGGGTGCG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CAA 72 bp ACTGTCCAGGAAAGTGTCAGGGTAGGGCTCCCTGGCTaGCAGCTGAGGACACTGGCACTTCTCCACAGGGCA +
Preference number: 4 (lower is better)
Translates to: TVQESVRVGLPG*QLRTLALLHRA
Trigger: TGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGGAGCCCTACCCTGACACTTTCCTGGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR TCA 90 bp GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTGACAGTACACCTCTGTaGGGGACATTATTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: ALATAGSRYWRTEAKAITDSTPL*GTLFPH
Trigger: GTGGGGGAATAATGTCCCTCACAGAGGTGTACTGTC...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR TCA 90 bp GTGCCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACGCTATCACCACCCTTCCAGAAGCTCAATTACCATaGCACCACTGTCAAAAACCC +
Preference number: 4 (lower is better)
Translates to: VPAHPSLWLQGHAITTLPEAQLP*HHCQKP
Trigger: GGGTTTTTGACAGTGGTGTCATGGTAATTGAGCTTC...TGGAAGGGTGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGTGTAGGAGTTCTTACTaGTCTGGAACGGACCGGGCT +
Preference number: 4 (lower is better)
Translates to: ATLSPPFHLSSASEKHLLCRSSY*SGTDRA
Trigger: AGCCCGGTCCGTTCCAGAGCAGTAAGAACTCCTACA...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGAGTTCTTACTGCTCTaGAACGGACCGGGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: ATLSPPFHLSSASEKHLLEFLLL*NGPGSL
Trigger: CAAAGAGCCCGGTCCGTTCCAGAGCAGTAAGAACTC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCACGCGCACCCCGCGCTaGTGGATAACCAGGGTCTCG +
Preference number: 4 (lower is better)
Translates to: AYGLPEFEVTSPCYTYEVTRTPR*WITRVS
Trigger: CGAGACCCTGGTTATCCAGCAGCGCGGGGTGCGCGT...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCACGCTCCTCCAAAGGTaGCTGCAATATTCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: WRTEAKAITVQESVRVGLTLLQR*LQYSSQ
Trigger: CTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTTCTGAGACAGGGGAATaGCCATGCAGCACTCATTAT +
Preference number: 4 (lower is better)
Translates to: ALATAGSRYWRTEAKAITSETGE*PCSTHY
Trigger: ATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGA...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGTTGGCCAGCTGCATGTaGTACTGTGTGCCGGAGCCA +
Preference number: 4 (lower is better)
Translates to: SNAPKEEPGTAFCSLISVLASCM*YCVPEP
Trigger: TGGCTCCGGCACACAGTACCACATGCAGCTGGCCAA...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGTTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACT +
Preference number: 4 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKFQPAV*PAACGT
Trigger: AGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAA...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGAGCTGTTTGGCCAGCTaGATGTGGTACTGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: EVRQPTESSSNLEVVLARSCLAS*MWYCVP
Trigger: CGGCACACAGTACCACATGCAGCTGGCCAAACAGCT...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGTCCTCCAAAGGTGCCTaGAATATTCCAGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKSSKGA*NIPASC
Trigger: ACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGA...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACT +
Preference number: 4 (lower is better)
Translates to: ATLSPPFHLSSASEKHLLGFSGD*VGYSHT
Trigger: AGTATGGGAATAGCCAACCCAGTCACCAGAGAAACC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CAA 72 bp AGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTaGTATTTAAGCACAGCCAGTACCAAAGGACCCAGC +
Preference number: 4 (lower is better)
Translates to: RAGHLSARGLIG*YLSTASTKGPS
Trigger: GCTGGGTCCTTTGGTACTGGCTGTGCTTAAATACAAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGTTTGTTAGAAGGAGCTaGGTGCAGGTGAACCACGAT +
Preference number: 4 (lower is better)
Translates to: SNAPKEEPGTAFCSLISVFVRRS*VQVNHD
Trigger: ATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAA...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGACATTCCCACAAGCTTaGCAAACTCTTCGGATGTTA +
Preference number: 4 (lower is better)
Translates to: SQYQRTQRHTGQEKKRQKTFPQA*QTLRML
Trigger: TAACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGT...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR TCA 90 bp AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATCATAGGTTTCTCTGGTaGCTGGGTTGGCTATTCCCA +
Preference number: 4 (lower is better)
Translates to: RQPTESSSNLEVVLARFYHRFLW*LGWLFP
Trigger: TGGGAATAGCCAACCCAGTCACCAGAGAAACCTATG...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCCCGATTCCAGCTGCCTaGTCCTCGATGAACACAATC +
Preference number: 4 (lower is better)
Translates to: AYGLPEFEVTSPCYTYEVPIPAA*SSMNTI
Trigger: GATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGG...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp ACAGTGATGAGCACCAAGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTTCTTACTCTTCCTGGCTaGGGTCCTTTATTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: TVMSTKSRAFVRPGLDWFLTLPG*GPLFVC
Trigger: ACAAACAAATAAAGGACCCCAGCCAGGAAGAGTAAG...AAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCTTGGTGCTCATCACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGAGCTCTTACTCTTCCTaGCTGGGGTCCTTTATTTGT +
Preference number: 4 (lower is better)
Translates to: EVRQPTESSSNLEVVLARSSYSS*LGSFIC
Trigger: ACAAATAAAGGACCCCAGCCAGGAAGAGTAAGAGCT...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTCGTCTCGGCAAAGGTaGCCCATCTTCTCTGCAAGG +
Preference number: 4 (lower is better)
Translates to: ARPVITTRGVSIQLFNSISSRQR*PIFSAR
Trigger: CCTTGCAGAGAAGATGGGCCACCTTTGCCGAGACGA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
3UTR CAA 72 bp GAAACATGCTGGCCTATGATAGGAATATGCGTCTGGTaGAGGCTGAGACTTCTTGGGAGACGAGAAAGGAGA +
Preference number: 4 (lower is better)
Translates to: ETCWPMIGICVW*RLRLLGRRERR
Trigger: TCTCCTTTCTCGTCTCCCAAGAAGTCTCAGCCTCAACCAGACGCATATTCCTATCATAGGCCAGCATGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGGCATGTGGTACTGTGTaGCGGAGCCATAGGTTTCTC +
Preference number: 4 (lower is better)
Translates to: FIWVYLLAQCRETLAKCKACGTV*RSHRFL
Trigger: GAGAAACCTATGGCTCCGGCACACAGTACCACATGC...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTTTGTTTGTAGTGACTaGGAAACTGGCACAGTCTCC +
Preference number: 4 (lower is better)
Translates to: ARPVITTRGVSIQLFNSIFVCSD*ETGTVS
Trigger: GGAGACTGTGCCAGTTTCCCAGTCACTACAAACAAA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR TCA 90 bp TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGTCGATGAACACAATCTaGGACAGGGGAATGGCCATG +
Preference number: 4 (lower is better)
Translates to: FIWVYLLAQCRETLAKCKSMNTI*DRGMAM
Trigger: CATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGA...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CCA 90 bp TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGCACTCATTATTCTTCTaGTCTCTCCAAATCAGCCGG +
Preference number: 4 (lower is better)
Translates to: FIWVYLLAQCRETLAKCKHSLFF*SLQISR
Trigger: CCGGCTGATTTGGAGAGACCAGAAGAATAATGAGTG...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR GCA 90 bp TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGTCTGTGACATCGCCTTaGTTCTCTTTAATCTTATTA +
Preference number: 4 (lower is better)
Translates to: FIWVYLLAQCRETLAKCKSVTSP*FSLILL
Trigger: TAATAAGATTAAAGAGAAGCAAGGCGATGTCACAGA...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 90 bp CTCTGGAACGGACCGGGCTCTTTGTTAGAAGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTCTTCCCGATTCCAGCTGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: LWNGPGSLLEGAGCR*TTILALFPIPAACS
Trigger: GGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAAGAGCCCGGTCCGTTCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 90 bp CCCCACGCTCCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCATAGGTTTCTC +
Preference number: 5 (lower is better)
Translates to: PHAPPKVPAIFQPAV*PAACGTVCRSHRFL
Trigger: GAGAAACCTATGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp CGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGCCTATTCCAGCCAGCTGTTaGGCCAGCTGCATGTGGTAC +
Preference number: 5 (lower is better)
Translates to: RYHHPSTSAQPPKSTFWPIPASC*ASCMWY
Trigger: GTACCACATGCAGCTGGCCAAACAGCTGGCTGGAAT...AGGCCAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 90 bp GCAACTCCATTCCTCGGGCCCGGTTCACTAGACAGTACACCTCTGTaGGGGACATTATTCCCCCACGCTCCTCCAAAGGTGCCTGCAATA +
Preference number: 5 (lower is better)
Translates to: ATPFLGPGSLDSTPL*GTLFPHAPPKVPAI
Trigger: TATTGCAGGCACCTTTGGAGGAGCGTGGGGGAATAATGTCCCTCACAGAGGTGTACTGTCTAGTGAACCGGGCCCGAGGAATGGAGTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS GCA 90 bp TGGGTGCAGGTGAACCACGATTTTGGCGCTCTTCCCGATTCCAGCTaGCTGCTCCTCGATGAACACAATCTGAGACAGGGGAATGGCCAT +
Preference number: 5 (lower is better)
Translates to: WVQVNHDFGALPDSS*LLLDEHNLRQGNGH
Trigger: ATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 90 bp GCGCTCTTCCCGATTCCAGCTGCCTGCTCCTCGATGAACACAATCTaGGACAGGGGAATGGCCATGCAGCACTCATTATTCTTCTGGTCT +
Preference number: 5 (lower is better)
Translates to: ALFPIPAACSSMNTI*DRGMAMQHSLFFWS
Trigger: AGACCAGAAGAATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 90 bp CCACGATTTTGGCGCTCTTCCCGATTCCAGCTGCCTGCTCCTCGATaGACACAATCTGAGACAGGGGAATGGCCATGCAGCACTCATTAT +
Preference number: 5 (lower is better)
Translates to: PRFWRSSRFQLPAPR*TQSETGEWPCSTHY
Trigger: ATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATAACGGACCGGGCTCTTaGTTAGAAGGAGCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: RQPTESSSNLEVVLARFYNGPGS*LEGAGC
Trigger: GCACCCAGCTCCTTCTAACAAAGAGCCCGGTCCGTT...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCT +
Preference number: 5 (lower is better)
Translates to: WRTEAKAITVQESVRVGLSASSI*HAFTKS
Trigger: AGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCGACATTCCCACAAGCTaGGCAAACTCTTCGGATGTT +
Preference number: 5 (lower is better)
Translates to: WRTEAKAITVQESVRVGLDIPTS*ANSSDV
Trigger: AACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGTC...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCATAACCAGGGTCTCGTaGATCTCCAGGAGGCCGCTG +
Preference number: 5 (lower is better)
Translates to: AYGLPEFEVTSPCYTYEVITRVS*ISRRPL
Trigger: CAGCGGCCTCCTGGAGATCAACGAGACCCTGGTTAT...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 90 bp CTGCATGTGGTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACTCAGCAGGTACGACTTAAACCTGAT +
Preference number: 5 (lower is better)
Translates to: LHVVLCAGAIGFSGD*VGYSHTQQVRLKPD
Trigger: ATCAGGTTTAAGTCGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTACCACATGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATTCTCTGGTGACTGGGTaGGCTATTCCCATACTCAGC +
Preference number: 5 (lower is better)
Translates to: RQPTESSSNLEVVLARFYSLVTG*AIPILS
Trigger: GCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGA...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCGCCTTAATCATCAGCTaGCTCAGGTCTTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: AYGLPEFEVTSPCYTYEVALIIS*LRSSKA
Trigger: GGCCTTTGAAGACCTGAGCAAGCTGATGATTAAGGC...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp CCCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTGATTACATTATTAGCGATTGATTaGGATAACTCCACCATTTCC +
Preference number: 5 (lower is better)
Translates to: PFMPFQNQTFPTARPVITLLAID*DNSTIS
Trigger: GGAAATGGTGGAGTTATCCAAATCAATCGCTAATAA...TGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTGCTGGGGTCCTTTATTaGTTTGTAGTGACTGGGAAA +
Preference number: 5 (lower is better)
Translates to: ARPVITTRGVSIQLFNSIAGVLY*FVVTGK
Trigger: TTTCCCAGTCACTACAAACAAATAAAGGACCCCAGC...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTCTCTTCCTTGTGAGTTaGAAGCTCAATTACCATGAC +
Preference number: 5 (lower is better)
Translates to: ARPVITTRGVSIQLFNSILFLVS*KLNYHD
Trigger: GTCATGGTAATTGAGCTTCAAACTCACAAGGAAGAG...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS-3UTR CAA 90 bp TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGCTCTGTGACATCGCCTaGCTTCTCTTTAATCTTATT +
Preference number: 5 (lower is better)
Translates to: FIWVYLLAQCRETLAKCKLCDIA*LLFNLI
Trigger: AATAAGATTAAAGAGAAGCAAGGCGATGTCACAGAG...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 72 bp ACGCGCACCCCGCGCTGCTGGATAACCAGGGTCTCGTaGATCTCCAGGAGGCCGCTGGTCCACACGAAGCGG +
Preference number: 6 (lower is better)
Translates to: TRTPRCWITRVS*ISRRPLVHTKR
Trigger: CCGCTTCGTGTGGACCAGCGGCCTCCTGGAGATCAACGAGACCCTGGTTATCCAGCAGCGCGGGGTGCGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 72 bp GGACCGGGCTCTTTGTTAGAAGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTCTTCCCGATTCCAGCT +
Preference number: 6 (lower is better)
Translates to: GPGSLLEGAGCR*TTILALFPIPA
Trigger: AGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAAGAGCCCGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 72 bp CCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCAT +
Preference number: 6 (lower is better)
Translates to: PPKVPAIFQPAV*PAACGTVCRSH
Trigger: ATGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 72 bp TCCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTaGGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCA +
Preference number: 6 (lower is better)
Translates to: SSKGACNIPASC*ASCMWYCVPEP
Trigger: TGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS GCA 72 bp GTGAACCACGATTTTGGCGCTCTTCCCGATTCCAGCTaGCTGCTCCTCGATGAACACAATCTGAGACAGGGG +
Preference number: 6 (lower is better)
Translates to: VNHDFGALPDSS*LLLDEHNLRQG
Trigger: CCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS GCA 72 bp AGGGACATTATTCCCCCACGCTCCTCCAAAGGTGCCTaGAATATTCCAGCCAGCTGTTTGGCCAGCTGCATG +
Preference number: 6 (lower is better)
Translates to: RDIIPPRSSKGA*NIPASCLASCM
Trigger: CATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGTGGGGGAATAATGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 72 bp CGCTTCCAGCATCTTGCACGCATTTACCAAATCTTCTaGCGAGAGCAACTCCATTCCTCGGGCCCGGTTCAC +
Preference number: 6 (lower is better)
Translates to: RFQHLARIYQIF*REQLHSSGPVH
Trigger: GTGAACCGGGCCCGAGGAATGGAGTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 72 bp TGTGGTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTaGCTGGGTTGGCTATTCCCATACTCAGCAGGTACG +
Preference number: 6 (lower is better)
Translates to: CGTVCRSHRFLW*LGWLFPYSAGT
Trigger: CGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTACCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS TCA 72 bp CCGATTCCAGCTGCCTGCTCCTCGATGAACACAATCTaGGACAGGGGAATGGCCATGCAGCACTCATTATTC +
Preference number: 6 (lower is better)
Translates to: PIPAACSSMNTI*DRGMAMQHSLF
Trigger: GAATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 72 bp GTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACTCAGCAGGTACGACTT +
Preference number: 6 (lower is better)
Translates to: VLCAGAIGFSGD*VGYSHTQQVRL
Trigger: AAGTCGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 90 bp AACCGTCTCCAGGGCCGAGGCCACCATTTCCTCTTCCTTGTGAGTTaGAAGCTCAATTACCATGACACCACTGTCAAAAACCCGAAGCCT +
Preference number: 6 (lower is better)
Translates to: NRLQGRGHHFLFLVS*KLNYHDTTVKNPKP
Trigger: AGGCTTCGGGTTTTTGACAGTGGTGTCATGGTAATTGAGCTTCAAACTCACAAGGAAGAGGAAATGGTGGCCTCGGCCCTGGAGACGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 90 bp AGGAGCAGCCTTTCTTTAGCCAGAAGGACAGACATTCCCACAAGCTaGGCAAACTCTTCGGATGTTAAGGACCCCCTTTCTGAAACCGTC +
Preference number: 6 (lower is better)
Translates to: RSSLSLARRTDIPTS*ANSSDVKDPLSETV
Trigger: GACGGTTTCAGAAAGGGGGTCCTTAACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGTCTGTCCTTCTGGCTAAAGAAAGGCTGCTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 72 bp CTTCCTGGCTGGGGTCCTTTATTTGTTTGTAGTGACTaGGAAACTGGCACAGTCTCCCATCTTCTCTGTGTC +
Preference number: 6 (lower is better)
Translates to: LPGWGPLFVCSD*ETGTVSHLLCV
Trigger: GACACAGAGAAGATGGGAGACTGTGCCAGTTTCCCAGTCACTACAAACAAATAAAGGACCCCAGCCAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CCA 72 bp GACAGGGGAATGGCCATGCAGCACTCATTATTCTTCTaGTCTCTCCAAATCAGCCGGTGTGTACTAAGAAGA +
Preference number: 6 (lower is better)
Translates to: DRGMAMQHSLFF*SLQISRCVLRR
Trigger: TCTTCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGAGTGCTGCATGGCCATTCCCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 72 bp CGAAGCCTGATAGGCAATTTTAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCTTCTGGCGAGAGCAAC +
Preference number: 6 (lower is better)
Translates to: RSLIGNFSASSI*HAFTKSSGESN
Trigger: GTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCTAAAATTGCCTATCAGGCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 90 bp TCAAAAACCCGAAGCCTGATAGGCAATTTTAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCTTCTGGCGAGAGCAACTCCATTCCT +
Preference number: 6 (lower is better)
Translates to: SKTRSLIGNFSASSI*HAFTKSSGESNSIP
Trigger: AGGAATGGAGTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCTAAAATTGCCTATCAGGCTTCGGGTTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 90 bp TCTGTGACATCGCCTTGCTTCTCTTTAATCTTATTAGCGATTGATTaGGATAACTCCACCATTTCCTTAGCCTTAATCATCAGCTTGCTC +
Preference number: 6 (lower is better)
Translates to: SVTSPCFSLILLAID*DNSTISLALIISLL
Trigger: GAGCAAGCTGATGATTAAGGCTAAGGAAATGGTGGAGTTATCCAAATCAATCGCTAATAAGATTAAAGAGAAGCAAGGCGATGTCACAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9
CDS CAA 72 bp TCGCCTTGCTTCTCTTTAATCTTATTAGCGATTGATTaGGATAACTCCACCATTTCCTTAGCCTTAATCATC +
Preference number: 6 (lower is better)
Translates to: SPCFSLILLAID*DNSTISLALII
Trigger: GATGATTAAGGCTAAGGAAATGGTGGAGTTATCCAAATCAATCGCTAATAAGATTAAAGAGAAGCAAGGCGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033866.9