Pregenerated sensors for VPS36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031479Ensembl transcript IDs: ENSMUST00000033866.9
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCCTCCACCTCATCCAGACAGTGTCCTCAAACTCCCAGATAGTGTaGCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACGCTATCACCA | + |
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Preference number: 1 (lower is better) Translates to: SLHLIQTVSSNSQIV*LRIPPCGSKATLSP Trigger: TGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACACTGTCTGGATGAGGTGGAGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 90 bp | CCCTGGCTTGCAGCTGAGGACACTGGCACTTCTCCACAGGGCATCTaGAGTAGCCTCCACCTCATCCAGACAGTGTCCTCAAACTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: PWLAAEDTGTSPQGI*SSLHLIQTVSSNSQ Trigger: CTGGGAGTTTGAGGACACTGTCTGGATGAGGTGGAGGCTACTGCAGATGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 90 bp | GGAAAACCCACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATACTaGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: GKPTQKALATAGSRY*RTEAKAITVQESVR Trigger: CCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 90 bp | GTCACCACAACCAGTGACAGACTGGAAAACCCACACAAAAGGCCTTaGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCA | + |
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Preference number: 1 (lower is better) Translates to: VTTTSDRLENPHKRP*PQRARDTGGQRQRP Trigger: TGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 90 bp | GAGGTGATTAGGGAAGACCTAAGGTCACCACAACCAGTGACAGACTaGAAAACCCACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATA | + |
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Preference number: 1 (lower is better) Translates to: EVIREDLRSPQPVTD*KTHTKGLGHSGLEI Trigger: TATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGACCTTAGGTCTTCCCTAATCACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 90 bp | CCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTaGTTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTT | + |
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Preference number: 1 (lower is better) Translates to: PSCPSRTRPFRLPDL*LQLGVCLYSSLIPF Trigger: AAATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 90 bp | AAGTCTGCTTCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTaGAGTTTGATTTCAGTGCTGTTGATTCTTAAACTACAGTGTAGC | + |
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Preference number: 1 (lower is better) Translates to: KSASNAPKEEPGTAF*SLISVLLILKLQCS Trigger: GCTACACTGTAGTTTAAGAATCAACAGCACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGAAGCAGACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 90 bp | CTAAAACAGATTATCAGTGACCTGTGGATTTTAAGATCCTTAGTTTaGCAAGAGGAATGTGCGTGCTTGCGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: LKQIISDLWILRSLV*QEECACLRVCVCVC Trigger: ACACACACACACACACACACGCAAGCACGCACATTCCTCTTGTCAAACTAAGGATCTTAAAATCCACAGGTCACTGATAATCTGTTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 90 bp | CTTAAACAAAATGATACTGCTGCAGGCTTTAAAGAATGCCACTCATaGAACTATCACTTAGAAACTAAACAGGACCTGAGGTGTAAATGC | + |
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Preference number: 1 (lower is better) Translates to: LKQNDTAAGFKECHS*NYHLETKQDLRCKC Trigger: GCATTTACACCTCAGGTCCTGTTTAGTTTCTAAGTGATAGTTTCATGAGTGGCATTCTTTAAAGCCTGCAGCAGTATCATTTTGTTTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 90 bp | AACATTTACAATTTGATGAGGTTTAGTCATGGCAAAATGATTACCTaGTCTATCCAAACATGCAACTTCACATCTTCTTCCTCCAAGGAC | + |
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Preference number: 1 (lower is better) Translates to: NIYNLMRFSHGKMIT*SIQTCNFTSSSSKD Trigger: GTCCTTGGAGGAAGAAGATGTGAAGTTGCATGTTTGGATAGATCAGGTAATCATTTTGCCATGACTAAACCTCATCAAATTGTAAATGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CAA 90 bp | AAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCCCTGGCTaGCAGCTGAGGACACTGGCACTTCTCCACAGGGCATCTGCAGTA | + |
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Preference number: 2 (lower is better) Translates to: KAITVQESVRVGLPG*QLRTLALLHRASAV Trigger: TACTGCAGATGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGGAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR GCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCCTGGTACGGCTTTCTaGAGTTTGATTTCAGTGCTG | + |
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Preference number: 2 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKPGTAF*SLISVL Trigger: CAGCACTGAAATCAAACTGCAGAAAGCCGTACCAGG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR CCA 90 bp | GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTAGTGTCGTGAGACCTTaGCAAAATGCAAGCTTATTG | + |
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Preference number: 2 (lower is better) Translates to: ALATAGSRYWRTEAKAITSVVRP*QNASLL Trigger: CAATAAGCTTGCATTTTGCCAAGGTCTCACGACACT...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR CCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCAACCAGTGACAGACTaGAAAACCCACACAAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKQPVTD*KTHTKG Trigger: GCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR GCA 90 bp | ATACTGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGTGCTTCCTTCATGTGTaGCTCCAAGGATGGGCACAT | + |
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Preference number: 2 (lower is better) Translates to: ILEDRGKGHHCPGKCQGRCFLHV*LQGWAH Trigger: ATGTGCCCATCCTTGGAGGCACACATGAAGGAAGCA...CCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR GCA 90 bp | GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGCTACAGTGTAGCTGTTaGTTCCTTCATGTGTGCCTC | + |
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Preference number: 2 (lower is better) Translates to: EVRQPTESSSNLEVVLARLQCSC*FLHVCL Trigger: GAGGCACACATGAAGGAAGCAACAGCTACACTGTAG...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCATAGGAATATGCGTCTaGTTGAGGCTGAGACTTCTT | + |
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Preference number: 2 (lower is better) Translates to: WRTEAKAITVQESVRVGLIGICV*LRLRLL Trigger: AAGAAGTCTCAGCCTCAACCAGACGCATATTCCTAT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR GCA 90 bp | GTGTCCTCAAACTCCCAGATAGTGTGCCTGCGCATCCCTCCCTGTGGCTCCAAGGAGACCTTGGCAAAATaGAAGCTTATTGACATAAAG | + |
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Preference number: 2 (lower is better) Translates to: VSSNSQIVCLRIPPCGSKETLAK*KLIDIK Trigger: CTTTATGTCAATAAGCTTGCATTTTGCCAAGGTCTC...CTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR GCA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTGCATAACAGGTCCTTaGTCCCTCCTTCCCCGGTGT | + |
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Preference number: 2 (lower is better) Translates to: ARPVITTRGVSIQLFNSICITGP*SLLPRC Trigger: ACACCGGGGAAGGAGGGAGCAAGGACCTGTTATGCA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR TCA 90 bp | TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGCTTCCTCCAAGGACCTaGACTCAGGATCAAATTAAT | + |
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Preference number: 2 (lower is better) Translates to: SNAPKEEPGTAFCSLISVLPPRT*TQDQIN Trigger: ATTAATTTGATCCTGAGTTCAGGTCCTTGGAGGAAG...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR CCA 90 bp | GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGCATTCTTGGTTTATTTaGGTTTATCTCTTAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: ATLSPPFHLSSASEKHLLHSWFI*VYLLAQ Trigger: CTGAGCTAAGAGATAAACCCAAATAAACCAAGAATG...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR TCA 90 bp | AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATGGCAAAATGATTACCTaGTCTATCCAAACATGCAAC | + |
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Preference number: 2 (lower is better) Translates to: RQPTESSSNLEVVLARFYGKMIT*SIQTCN Trigger: GTTGCATGTTTGGATAGATCAGGTAATCATTTTGCC...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR TCA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTCAAGGGTATTTTATTTaGTCTGGTAGAGGCATGCCT | + |
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Preference number: 2 (lower is better) Translates to: ARPVITTRGVSIQLFNSIQGYFI*SGRGMP Trigger: AGGCATGCCTCTACCAGATCAAATAAAATACCCTTG...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 72 bp | CTCATCCAGACAGTGTCCTCAAACTCCCAGATAGTGTaGCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACG | + |
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Preference number: 3 (lower is better) Translates to: LIQTVSSNSQIV*LRIPPCGSKAT Trigger: CGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTTGAGGACACTGTCTGGATGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 72 bp | AAACTCCCAGATAGTGTGCCTGCGCATCCCTCCCTGTaGCTCCAAGGCCACGCTATCACCACCCTTCCACCT | + |
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Preference number: 3 (lower is better) Translates to: KLPDSVPAHPSL*LQGHAITTLPP Trigger: AGGTGGAAGGGTGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCACACTATCTGGGAGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 72 bp | ACACAAAAGGCCTTGGCCACAGCGGGCTCGAGATACTaGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: TQKALATAGSRY*RTEAKAITVQE Trigger: TTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 72 bp | ACCAGTGACAGACTGGAAAACCCACACAAAAGGCCTTaGCCACAGCGGGCTCGAGATACTGGAGGACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: TSDRLENPHKRP*PQRARDTGGQR Trigger: CCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 72 bp | GCCCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTaGCCGACCTGTGATTACAACTCGGGGTGTGTCTAT | + |
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Preference number: 3 (lower is better) Translates to: ALHALPEPDLSD*PTCDYNSGCVY Trigger: ATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CCA 72 bp | AGGGAAGACCTAAGGTCACCACAACCAGTGACAGACTaGAAAACCCACACAAAAGGCCTTGGCCACAGCGGG | + |
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Preference number: 3 (lower is better) Translates to: REDLRSPQPVTD*KTHTKGLGHSG Trigger: CCCGCTGTGGCCAAGGCCTTTTGTGTGGGTTTTCCAGTCTGTCACTGGTTGTGGTGACCTTAGGTCTTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR-3UTR CAA 90 bp | ACAGTGATGAGCACCAAGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTTGGAATATGCGTCTGGTaGAGGCTGAGACTTCTTGGG | + |
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Preference number: 3 (lower is better) Translates to: TVMSTKSRAFVRPGLDWFGICVW*RLRLLG Trigger: CCCAAGAAGTCTCAGCCTCAACCAGACGCATATTCC...AAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCTTGGTGCTCATCACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 72 bp | CCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTaGTTACAACTCGGGGTGTGTCTATACAGCTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: PSRTRPFRLPDL*LQLGVCLYSSL Trigger: TAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 72 bp | GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATaGTATACATATGAAGTCAGGCAACCTACTGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: AYGLPEFEVTSP*YTYEVRQPTES Trigger: GCTTTCAGTAGGTTGCCTGACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 72 bp | GGACCTAGCCCTCTCCTTTTCCAAGGGTATTTTATTTaGTCTGGTAGAGGCATGCCTAAGTCTGCTTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: GPSPLLFQGYFI*SGRGMPKSASN Trigger: GTTGGAAGCAGACTTAGGCATGCCTCTACCAGATCAAATAAAATACCCTTGGAAAAGGAGAGGGCTAGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR GCA 72 bp | TATCACTTAGAAACTAAACAGGACCTGAGGTGTAAATaGATAACAGGTCCTTGCTCCCTCCTTCCCCGGTGT | + |
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Preference number: 3 (lower is better) Translates to: YHLETKQDLRCK*ITGPCSLLPRC Trigger: ACACCGGGGAAGGAGGGAGCAAGGACCTGTTATGCATTTACACCTCAGGTCCTGTTTAGTTTCTAAGTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 72 bp | AATGATACTGCTGCAGGCTTTAAAGAATGCCACTCATaGAACTATCACTTAGAAACTAAACAGGACCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: NDTAAGFKECHS*NYHLETKQDLR Trigger: CCTCAGGTCCTGTTTAGTTTCTAAGTGATAGTTTCATGAGTGGCATTCTTTAAAGCCTGCAGCAGTATCATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR TCA 72 bp | CTTACAACCAATCCAAGTGCTAAAACAGATTATCAGTaGCCTGTGGATTTTAAGATCCTTAGTTTGACAAGA | + |
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Preference number: 3 (lower is better) Translates to: LTTNPSAKTDYQ*PVDFKILSLTR Trigger: TCTTGTCAAACTAAGGATCTTAAAATCCACAGGTCACTGATAATCTGTTTTAGCACTTGGATTGGTTGTAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR CCA 90 bp | CGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGCCTTCTCCAGGAGGCCGCTaGTCCACACGAAGCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RYHHPSTSAQPPKSTFWPSPGGR*STRSGP Trigger: TGGACCGCTTCGTGTGGACCAGCGGCCTCCTGGAGA...AGGCCAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR TCA 90 bp | GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: ATLSPPFHLSSASEKHLLGAGCR*TTILAL Trigger: GAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR CCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGCGCACCCCGCGCTGCTaGATAACCAGGGTCTCGTTG | + |
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Preference number: 4 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKRTPRC*ITRVSL Trigger: CAACGAGACCCTGGTTATCCAGCAGCGCGGGGTGCG...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| 3UTR CAA 72 bp | ACTGTCCAGGAAAGTGTCAGGGTAGGGCTCCCTGGCTaGCAGCTGAGGACACTGGCACTTCTCCACAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TVQESVRVGLPG*QLRTLALLHRA Trigger: TGCCCTGTGGAGAAGTGCCAGTGTCCTCAGCTGCAAGCCAGGGAGCCCTACCCTGACACTTTCCTGGACAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR TCA 90 bp | GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTGACAGTACACCTCTGTaGGGGACATTATTCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: ALATAGSRYWRTEAKAITDSTPL*GTLFPH Trigger: GTGGGGGAATAATGTCCCTCACAGAGGTGTACTGTC...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR TCA 90 bp | GTGCCTGCGCATCCCTCCCTGTGGCTCCAAGGCCACGCTATCACCACCCTTCCAGAAGCTCAATTACCATaGCACCACTGTCAAAAACCC | + |
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Preference number: 4 (lower is better) Translates to: VPAHPSLWLQGHAITTLPEAQLP*HHCQKP Trigger: GGGTTTTTGACAGTGGTGTCATGGTAATTGAGCTTC...TGGAAGGGTGGTGATAGCGTGGCCTTGGAGCCACAGGGAGGGATGCGCAGGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR GCA 90 bp | GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGTGTAGGAGTTCTTACTaGTCTGGAACGGACCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ATLSPPFHLSSASEKHLLCRSSY*SGTDRA Trigger: AGCCCGGTCCGTTCCAGAGCAGTAAGAACTCCTACA...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR CCA 90 bp | GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGAGTTCTTACTGCTCTaGAACGGACCGGGCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: ATLSPPFHLSSASEKHLLEFLLL*NGPGSL Trigger: CAAAGAGCCCGGTCCGTTCCAGAGCAGTAAGAACTC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR GCA 90 bp | GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCACGCGCACCCCGCGCTaGTGGATAACCAGGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: AYGLPEFEVTSPCYTYEVTRTPR*WITRVS Trigger: CGAGACCCTGGTTATCCAGCAGCGCGGGGTGCGCGT...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR GCA 90 bp | TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCACGCTCCTCCAAAGGTaGCTGCAATATTCCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: WRTEAKAITVQESVRVGLTLLQR*LQYSSQ Trigger: CTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR CCA 90 bp | GCCTTGGCCACAGCGGGCTCGAGATACTGGAGGACAGAGGCAAAGGCCATCACTTCTGAGACAGGGGAATaGCCATGCAGCACTCATTAT | + |
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Preference number: 4 (lower is better) Translates to: ALATAGSRYWRTEAKAITSETGE*PCSTHY Trigger: ATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGA...AGTGATGGCCTTTGCCTCTGTCCTCCAGTATCTCGAGCCCGCTGTGGCCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS-3UTR CCA 90 bp | TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGTTGGCCAGCTGCATGTaGTACTGTGTGCCGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SNAPKEEPGTAFCSLISVLASCM*YCVPEP Trigger: TGGCTCCGGCACACAGTACCACATGCAGCTGGCCAA...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGTTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACT | + |
|
Preference number: 4 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKFQPAV*PAACGT Trigger: AGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAA...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR GCA 90 bp | GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGAGCTGTTTGGCCAGCTaGATGTGGTACTGTGTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: EVRQPTESSSNLEVVLARSCLAS*MWYCVP Trigger: CGGCACACAGTACCACATGCAGCTGGCCAAACAGCT...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR GCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGTCCTCCAAAGGTGCCTaGAATATTCCAGCCAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKSSKGA*NIPASC Trigger: ACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGA...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | GCCACGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACT | + |
|
Preference number: 4 (lower is better) Translates to: ATLSPPFHLSSASEKHLLGFSGD*VGYSHT Trigger: AGTATGGGAATAGCCAACCCAGTCACCAGAGAAACC...CAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| 3UTR CAA 72 bp | AGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTaGTATTTAAGCACAGCCAGTACCAAAGGACCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RAGHLSARGLIG*YLSTASTKGPS Trigger: GCTGGGTCCTTTGGTACTGGCTGTGCTTAAATACAAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | TCCAACGCCCCCAAGGAAGAGCCTGGTACGGCTTTCTGCAGTTTGATTTCAGTGTTTGTTAGAAGGAGCTaGGTGCAGGTGAACCACGAT | + |
|
Preference number: 4 (lower is better) Translates to: SNAPKEEPGTAFCSLISVFVRRS*VQVNHD Trigger: ATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAA...CACTGAAATCAAACTGCAGAAAGCCGTACCAGGCTCTTCCTTGGGGGCGTTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | AGCCAGTACCAAAGGACCCAGCGGCACACTGGGCAAGAAAAGAAGCGCCAGAAGACATTCCCACAAGCTTaGCAAACTCTTCGGATGTTA | + |
|
Preference number: 4 (lower is better) Translates to: SQYQRTQRHTGQEKKRQKTFPQA*QTLRML Trigger: TAACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGT...CTTCTGGCGCTTCTTTTCTTGCCCAGTGTGCCGCTGGGTCCTTTGGTACTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR TCA 90 bp | AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATCATAGGTTTCTCTGGTaGCTGGGTTGGCTATTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RQPTESSSNLEVVLARFYHRFLW*LGWLFP Trigger: TGGGAATAGCCAACCCAGTCACCAGAGAAACCTATG...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR GCA 90 bp | GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCCCGATTCCAGCTGCCTaGTCCTCGATGAACACAATC | + |
|
Preference number: 4 (lower is better) Translates to: AYGLPEFEVTSPCYTYEVPIPAA*SSMNTI Trigger: GATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGG...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | ACAGTGATGAGCACCAAGAGCAGGGCATTTGTCCGCCCGGGGCTTGATTGGTTTCTTACTCTTCCTGGCTaGGGTCCTTTATTTGTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TVMSTKSRAFVRPGLDWFLTLPG*GPLFVC Trigger: ACAAACAAATAAAGGACCCCAGCCAGGAAGAGTAAG...AAACCAATCAAGCCCCGGGCGGACAAATGCCCTGCTCTTGGTGCTCATCACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | GAAGTCAGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGAGCTCTTACTCTTCCTaGCTGGGGTCCTTTATTTGT | + |
|
Preference number: 4 (lower is better) Translates to: EVRQPTESSSNLEVVLARSSYSS*LGSFIC Trigger: ACAAATAAAGGACCCCAGCCAGGAAGAGTAAGAGCT...CCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCTGACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTCGTCTCGGCAAAGGTaGCCCATCTTCTCTGCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: ARPVITTRGVSIQLFNSISSRQR*PIFSAR Trigger: CCTTGCAGAGAAGATGGGCCACCTTTGCCGAGACGA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| 3UTR CAA 72 bp | GAAACATGCTGGCCTATGATAGGAATATGCGTCTGGTaGAGGCTGAGACTTCTTGGGAGACGAGAAAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ETCWPMIGICVW*RLRLLGRRERR Trigger: TCTCCTTTCTCGTCTCCCAAGAAGTCTCAGCCTCAACCAGACGCATATTCCTATCATAGGCCAGCATGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR GCA 90 bp | TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGGCATGTGGTACTGTGTaGCGGAGCCATAGGTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FIWVYLLAQCRETLAKCKACGTV*RSHRFL Trigger: GAGAAACCTATGGCTCCGGCACACAGTACCACATGC...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTTTTGTTTGTAGTGACTaGGAAACTGGCACAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ARPVITTRGVSIQLFNSIFVCSD*ETGTVS Trigger: GGAGACTGTGCCAGTTTCCCAGTCACTACAAACAAA...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR TCA 90 bp | TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGTCGATGAACACAATCTaGGACAGGGGAATGGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: FIWVYLLAQCRETLAKCKSMNTI*DRGMAM Trigger: CATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGA...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGCACTCATTATTCTTCTaGTCTCTCCAAATCAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: FIWVYLLAQCRETLAKCKHSLFF*SLQISR Trigger: CCGGCTGATTTGGAGAGACCAGAAGAATAATGAGTG...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR GCA 90 bp | TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGTCTGTGACATCGCCTTaGTTCTCTTTAATCTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: FIWVYLLAQCRETLAKCKSVTSP*FSLILL Trigger: TAATAAGATTAAAGAGAAGCAAGGCGATGTCACAGA...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 90 bp | CTCTGGAACGGACCGGGCTCTTTGTTAGAAGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTCTTCCCGATTCCAGCTGCCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LWNGPGSLLEGAGCR*TTILALFPIPAACS Trigger: GGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAAGAGCCCGGTCCGTTCCAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CCA 90 bp | CCCCACGCTCCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCATAGGTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PHAPPKVPAIFQPAV*PAACGTVCRSHRFL Trigger: GAGAAACCTATGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | CGCTATCACCACCCTTCCACCTCAGCTCAGCCTCCGAAAAGCACCTTCTGGCCTATTCCAGCCAGCTGTTaGGCCAGCTGCATGTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: RYHHPSTSAQPPKSTFWPIPASC*ASCMWY Trigger: GTACCACATGCAGCTGGCCAAACAGCTGGCTGGAAT...AGGCCAGAAGGTGCTTTTCGGAGGCTGAGCTGAGGTGGAAGGGTGGTGATAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 90 bp | GCAACTCCATTCCTCGGGCCCGGTTCACTAGACAGTACACCTCTGTaGGGGACATTATTCCCCCACGCTCCTCCAAAGGTGCCTGCAATA | + |
|
Preference number: 5 (lower is better) Translates to: ATPFLGPGSLDSTPL*GTLFPHAPPKVPAI Trigger: TATTGCAGGCACCTTTGGAGGAGCGTGGGGGAATAATGTCCCTCACAGAGGTGTACTGTCTAGTGAACCGGGCCCGAGGAATGGAGTTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS GCA 90 bp | TGGGTGCAGGTGAACCACGATTTTGGCGCTCTTCCCGATTCCAGCTaGCTGCTCCTCGATGAACACAATCTGAGACAGGGGAATGGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: WVQVNHDFGALPDSS*LLLDEHNLRQGNGH Trigger: ATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 90 bp | GCGCTCTTCCCGATTCCAGCTGCCTGCTCCTCGATGAACACAATCTaGGACAGGGGAATGGCCATGCAGCACTCATTATTCTTCTGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: ALFPIPAACSSMNTI*DRGMAMQHSLFFWS Trigger: AGACCAGAAGAATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 90 bp | CCACGATTTTGGCGCTCTTCCCGATTCCAGCTGCCTGCTCCTCGATaGACACAATCTGAGACAGGGGAATGGCCATGCAGCACTCATTAT | + |
|
Preference number: 5 (lower is better) Translates to: PRFWRSSRFQLPAPR*TQSETGEWPCSTHY Trigger: ATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATAACGGACCGGGCTCTTaGTTAGAAGGAGCTGGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: RQPTESSSNLEVVLARFYNGPGS*LEGAGC Trigger: GCACCCAGCTCCTTCTAACAAAGAGCCCGGTCCGTT...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCT | + |
|
Preference number: 5 (lower is better) Translates to: WRTEAKAITVQESVRVGLSASSI*HAFTKS Trigger: AGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCT...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | TGGAGGACAGAGGCAAAGGCCATCACTGTCCAGGAAAGTGTCAGGGTAGGGCTCGACATTCCCACAAGCTaGGCAAACTCTTCGGATGTT | + |
|
Preference number: 5 (lower is better) Translates to: WRTEAKAITVQESVRVGLDIPTS*ANSSDV Trigger: AACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGTC...GAGCCCTACCCTGACACTTTCCTGGACAGTGATGGCCTTTGCCTCTGTCCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCATAACCAGGGTCTCGTaGATCTCCAGGAGGCCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: AYGLPEFEVTSPCYTYEVITRVS*ISRRPL Trigger: CAGCGGCCTCCTGGAGATCAACGAGACCCTGGTTAT...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CCA 90 bp | CTGCATGTGGTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACTCAGCAGGTACGACTTAAACCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: LHVVLCAGAIGFSGD*VGYSHTQQVRLKPD Trigger: ATCAGGTTTAAGTCGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTACCACATGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | AGGCAACCTACTGAAAGCTCCAGCAATCTGGAGGTGGTACTAGCCAGGTTCTATTCTCTGGTGACTGGGTaGGCTATTCCCATACTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: RQPTESSSNLEVVLARFYSLVTG*AIPILS Trigger: GCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGA...ATAGAACCTGGCTAGTACCACCTCCAGATTGCTGGAGCTTTCAGTAGGTTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | GCCTATGGGCTCCCTGAGTTTGAGGTAACGTCACCATGCTATACATATGAAGTCGCCTTAATCATCAGCTaGCTCAGGTCTTCAAAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AYGLPEFEVTSPCYTYEVALIIS*LRSSKA Trigger: GGCCTTTGAAGACCTGAGCAAGCTGATGATTAAGGC...GACTTCATATGTATAGCATGGTGACGTTACCTCAAACTCAGGGAGCCCATAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | CCCTTCATGCCCTTCCAGAACCAGACCTTTCCGACTGCCCGACCTGTGATTACATTATTAGCGATTGATTaGGATAACTCCACCATTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PFMPFQNQTFPTARPVITLLAID*DNSTIS Trigger: GGAAATGGTGGAGTTATCCAAATCAATCGCTAATAA...TGTAATCACAGGTCGGGCAGTCGGAAAGGTCTGGTTCTGGAAGGGCATGAAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTGCTGGGGTCCTTTATTaGTTTGTAGTGACTGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: ARPVITTRGVSIQLFNSIAGVLY*FVVTGK Trigger: TTTCCCAGTCACTACAAACAAATAAAGGACCCCAGC...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | GCCCGACCTGTGATTACAACTCGGGGTGTGTCTATACAGCTCTTTAATTCCATTCTCTTCCTTGTGAGTTaGAAGCTCAATTACCATGAC | + |
|
Preference number: 5 (lower is better) Translates to: ARPVITTRGVSIQLFNSILFLVS*KLNYHD Trigger: GTCATGGTAATTGAGCTTCAAACTCACAAGGAAGAG...AATGGAATTAAAGAGCTGTATAGACACACCCCGAGTTGTAATCACAGGTCGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS-3UTR CAA 90 bp | TTTATTTGGGTTTATCTCTTAGCTCAGTGTCGTGAGACCTTGGCAAAATGCAAGCTCTGTGACATCGCCTaGCTTCTCTTTAATCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: FIWVYLLAQCRETLAKCKLCDIA*LLFNLI Trigger: AATAAGATTAAAGAGAAGCAAGGCGATGTCACAGAG...CTTGCATTTTGCCAAGGTCTCACGACACTGAGCTAAGAGATAAACCCAAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CAA 72 bp | ACGCGCACCCCGCGCTGCTGGATAACCAGGGTCTCGTaGATCTCCAGGAGGCCGCTGGTCCACACGAAGCGG | + |
|
Preference number: 6 (lower is better) Translates to: TRTPRCWITRVS*ISRRPLVHTKR Trigger: CCGCTTCGTGTGGACCAGCGGCCTCCTGGAGATCAACGAGACCCTGGTTATCCAGCAGCGCGGGGTGCGCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 72 bp | GGACCGGGCTCTTTGTTAGAAGGAGCTGGGTGCAGGTaGACCACGATTTTGGCGCTCTTCCCGATTCCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: GPGSLLEGAGCR*TTILALFPIPA Trigger: AGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCACCTGCACCCAGCTCCTTCTAACAAAGAGCCCGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CCA 72 bp | CCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTTaGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: PPKVPAIFQPAV*PAACGTVCRSH Trigger: ATGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CAA 72 bp | TCCTCCAAAGGTGCCTGCAATATTCCAGCCAGCTGTTaGGCCAGCTGCATGTGGTACTGTGTGCCGGAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: SSKGACNIPASC*ASCMWYCVPEP Trigger: TGGCTCCGGCACACAGTACCACATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS GCA 72 bp | GTGAACCACGATTTTGGCGCTCTTCCCGATTCCAGCTaGCTGCTCCTCGATGAACACAATCTGAGACAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: VNHDFGALPDSS*LLLDEHNLRQG Trigger: CCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGGGAAGAGCGCCAAAATCGTGGTTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS GCA 72 bp | AGGGACATTATTCCCCCACGCTCCTCCAAAGGTGCCTaGAATATTCCAGCCAGCTGTTTGGCCAGCTGCATG | + |
|
Preference number: 6 (lower is better) Translates to: RDIIPPRSSKGA*NIPASCLASCM Trigger: CATGCAGCTGGCCAAACAGCTGGCTGGAATATTGCAGGCACCTTTGGAGGAGCGTGGGGGAATAATGTCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CCA 72 bp | CGCTTCCAGCATCTTGCACGCATTTACCAAATCTTCTaGCGAGAGCAACTCCATTCCTCGGGCCCGGTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: RFQHLARIYQIF*REQLHSSGPVH Trigger: GTGAACCGGGCCCGAGGAATGGAGTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 72 bp | TGTGGTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTaGCTGGGTTGGCTATTCCCATACTCAGCAGGTACG | + |
|
Preference number: 6 (lower is better) Translates to: CGTVCRSHRFLW*LGWLFPYSAGT Trigger: CGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTACCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS TCA 72 bp | CCGATTCCAGCTGCCTGCTCCTCGATGAACACAATCTaGGACAGGGGAATGGCCATGCAGCACTCATTATTC | + |
|
Preference number: 6 (lower is better) Translates to: PIPAACSSMNTI*DRGMAMQHSLF Trigger: GAATAATGAGTGCTGCATGGCCATTCCCCTGTCTCAGATTGTGTTCATCGAGGAGCAGGCAGCTGGAATCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
||
| CDS CCA 72 bp | GTACTGTGTGCCGGAGCCATAGGTTTCTCTGGTGACTaGGTTGGCTATTCCCATACTCAGCAGGTACGACTT | + |
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Preference number: 6 (lower is better) Translates to: VLCAGAIGFSGD*VGYSHTQQVRL Trigger: AAGTCGTACCTGCTGAGTATGGGAATAGCCAACCCAGTCACCAGAGAAACCTATGGCTCCGGCACACAGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 90 bp | AACCGTCTCCAGGGCCGAGGCCACCATTTCCTCTTCCTTGTGAGTTaGAAGCTCAATTACCATGACACCACTGTCAAAAACCCGAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: NRLQGRGHHFLFLVS*KLNYHDTTVKNPKP Trigger: AGGCTTCGGGTTTTTGACAGTGGTGTCATGGTAATTGAGCTTCAAACTCACAAGGAAGAGGAAATGGTGGCCTCGGCCCTGGAGACGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 90 bp | AGGAGCAGCCTTTCTTTAGCCAGAAGGACAGACATTCCCACAAGCTaGGCAAACTCTTCGGATGTTAAGGACCCCCTTTCTGAAACCGTC | + |
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Preference number: 6 (lower is better) Translates to: RSSLSLARRTDIPTS*ANSSDVKDPLSETV Trigger: GACGGTTTCAGAAAGGGGGTCCTTAACATCCGAAGAGTTTGCCAAGCTTGTGGGAATGTCTGTCCTTCTGGCTAAAGAAAGGCTGCTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CCA 72 bp | CTTCCTGGCTGGGGTCCTTTATTTGTTTGTAGTGACTaGGAAACTGGCACAGTCTCCCATCTTCTCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: LPGWGPLFVCSD*ETGTVSHLLCV Trigger: GACACAGAGAAGATGGGAGACTGTGCCAGTTTCCCAGTCACTACAAACAAATAAAGGACCCCAGCCAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CCA 72 bp | GACAGGGGAATGGCCATGCAGCACTCATTATTCTTCTaGTCTCTCCAAATCAGCCGGTGTGTACTAAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: DRGMAMQHSLFF*SLQISRCVLRR Trigger: TCTTCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGAGTGCTGCATGGCCATTCCCCTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 72 bp | CGAAGCCTGATAGGCAATTTTAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCTTCTGGCGAGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: RSLIGNFSASSI*HAFTKSSGESN Trigger: GTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCTAAAATTGCCTATCAGGCTTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 90 bp | TCAAAAACCCGAAGCCTGATAGGCAATTTTAGCGCTTCCAGCATCTaGCACGCATTTACCAAATCTTCTGGCGAGAGCAACTCCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: SKTRSLIGNFSASSI*HAFTKSSGESNSIP Trigger: AGGAATGGAGTTGCTCTCGCCAGAAGATTTGGTAAATGCGTGCAAGATGCTGGAAGCGCTAAAATTGCCTATCAGGCTTCGGGTTTTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 90 bp | TCTGTGACATCGCCTTGCTTCTCTTTAATCTTATTAGCGATTGATTaGGATAACTCCACCATTTCCTTAGCCTTAATCATCAGCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SVTSPCFSLILLAID*DNSTISLALIISLL Trigger: GAGCAAGCTGATGATTAAGGCTAAGGAAATGGTGGAGTTATCCAAATCAATCGCTAATAAGATTAAAGAGAAGCAAGGCGATGTCACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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| CDS CAA 72 bp | TCGCCTTGCTTCTCTTTAATCTTATTAGCGATTGATTaGGATAACTCCACCATTTCCTTAGCCTTAATCATC | + |
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Preference number: 6 (lower is better) Translates to: SPCFSLILLAID*DNSTISLALII Trigger: GATGATTAAGGCTAAGGAAATGGTGGAGTTATCCAAATCAATCGCTAATAAGATTAAAGAGAAGCAAGGCGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033866.9 |
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