Pregenerated sensors for VPS35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031696Ensembl transcript IDs: ENSMUST00000034131.10
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATaGAAGGGAGACCTAGTTAAGCCCTTTCTGATGTGTAGAAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: KEWETYLSISERHNL*KGDLVKPFLMCRKE Trigger: CTCCTTTCTACACATCAGAAAGGGCTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR TCA 90 bp | TATATTACACATAGGCTTTATCTTGCATTCAGGGAAAGCCCACGCTaGATTTCACGCACAGTACTCCTGTCCTCTAAAGTAATCTCACAT | + |
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Preference number: 1 (lower is better) Translates to: YITHRLYLAFRESPR*ISRTVLLSSKVISH Trigger: ATGTGAGATTACTTTAGAGGACAGGAGTACTGTGCGTGAAATTCAGCGTGGGCTTTCCCTGAATGCAAGATAAAGCCTATGTGTAATATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR-3UTR CCA 90 bp | GATCAGTCATGCTACTTGGGTGATCAGACAGACTTAAACAATTATGAAGTGAGTGAAAGGCACAATCTATaGAAGGGAGACCTAGTTAAG | + |
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Preference number: 2 (lower is better) Translates to: DQSCYLGDQTDLNNYEVSERHNL*KGDLVK Trigger: CTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTC...ACTCACTTCATAATTGTTTAAGTCTGTCTGATCACCCAAGTAGCATGACTGATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR-3UTR CCA 90 bp | TTCAATTTTCACAGATCACAGAAGTTTAAAGAGCAGATCAGTCATGCTACTTGGATCACAGGTAAGGAATaGGAAACCTACCTCAGCATT | + |
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Preference number: 2 (lower is better) Translates to: FNFHRSQKFKEQISHATWITGKE*ETYLSI Trigger: AATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT...CCAAGTAGCATGACTGATCTGCTCTTTAAACTTCTGTGATCTGTGAAAATTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR CAA 90 bp | AAAATAAGAAAGGAGAGCTCCATTAGTAGCCAGAATAAGTGGGTTTaGCTTTCAATTTTCACAGATCACAGAAGTTTAAAGAGCAGATCA | + |
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Preference number: 2 (lower is better) Translates to: KIRKESSISSQNKWV*LSIFTDHRSLKSRS Trigger: TGATCTGCTCTTTAAACTTCTGTGATCTGTGAAAATTGAAAGCAAAACCCACTTATTCTGGCTACTAATGGAGCTCTCCTTTCTTATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR-3UTR CAA 90 bp | TCACGCACAGTACTCCTGTCCTCTAAAGTAATCTCACATAGGACCAGAGAACGAGATCAGTCATGCTACTaGGGTGATCAGACAGACTTA | + |
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Preference number: 3 (lower is better) Translates to: SRTVLLSSKVISHRTRERDQSCY*GDQTDL Trigger: TAAGTCTGTCTGATCACCCAAGTAGCATGACTGATC...TCGTTCTCTGGTCCTATGTGAGATTACTTTAGAGGACAGGAGTACTGTGCGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR CCA 72 bp | GAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATaGAAGGGAGACCTAGTTAAGCCCTTTCTGATGTGT | + |
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Preference number: 3 (lower is better) Translates to: ETYLSISERHNL*KGDLVKPFLMC Trigger: ACACATCAGAAAGGGCTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACGTGAAGCGAATCCGCTaGTTTCCACCAGCCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDVKRIR*FPPAPK Trigger: TTTTGGGGCTGGTGGAAATCAGCGGATTCGCTTCAC...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTACCAAAGGTGGCAGTGTaGAGCGAATCCGCTGATTTC | + |
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Preference number: 4 (lower is better) Translates to: ITGKEWETYLSISERHNLPKVAV*SESADF Trigger: GAAATCAGCGGATTCGCTTCACACTGCCACCTTTGG...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | GTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAAACCTACCTCACAACCTGCTCCAGAATaGCTGTTAGAACAATCTGTT | + |
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Preference number: 4 (lower is better) Translates to: VWRCWVNTSQVRNGKPTSQPAPE*LLEQSV Trigger: AACAGATTGTTCTAACAGGCATTCTGGAGCAGGTTG...TGAGGTAGGTTTCCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACAGCCAACTGGTAAGCTaGAAATACCAAAGGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDSQLVS*KYQRWQ Trigger: CTGCCACCTTTGGTATTTGCAGCTTACCAGTTGGCT...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTACCAGACCAAAAGAGATaGGCACATGTGCTCACGGCT | + |
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Preference number: 4 (lower is better) Translates to: ITGKEWETYLSISERHNLPDQKR*AHVLTA Trigger: AGCCGTGAGCACATGTGCGCATCTCTTTTGGTCTGG...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | TACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACCTAGTTAAGCCCTGCAAATACCAAAGGTaGCAGTGTGAAGCGAATCCG | + |
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Preference number: 4 (lower is better) Translates to: YLSISERHNLWKGDLVKPCKYQR*QCEANP Trigger: CGGATTCGCTTCACACTGCCACCTTTGGTATTTGCA...GGGCTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | GGTCCTGAAGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGCACTTGTCATCCATTTaGGAATTCTCTTTGTATCGA | + |
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Preference number: 4 (lower is better) Translates to: GPEGVWRCWVNTSQVRNGHLSSI*EFSLYR Trigger: TCGATACAAAGAGAATTCCCAAATGGATGACAAGTG...CCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCTTCAGGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | AGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAAACCTACGCACTGATAGTCTGGTaGGCAAATGAAAATATCTTC | + |
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Preference number: 4 (lower is better) Translates to: RCLEVLGKHITGKEWETYALIVW*ANENIF Trigger: GAAGATATTTTCATTTGCTCACCAGACTATCAGTGC...GTAGGTTTCCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACGCAGCTAATGCTCCTTaGAGAAAAAGTCTCAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDAANAP*RKSLSG Trigger: ACCACTGAGACTTTTTCTTCAAGGAGCATTAGCTGC...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | AGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAAACCTACCATGATTCTCTTCACTaGAGCATTTCATCCTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: RCLEVLGKHITGKEWETYHDSLH*SISSSQ Trigger: TTGAGAGGATGAAATGCTTCAGTGAAGAGAATCATG...GTAGGTTTCCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACTCTTTAGGCACTCCATaGCCCTTTTACCTCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDSLGTP*PFYLHE Trigger: TTCATGGAGGTAAAAGGGTCATGGAGTGCCTAAAGA...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACATCTCTATAAAGAGCTaGACTTGTAGAGAGGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDISIKS*TCREGS Trigger: GGACCCCTCTCTACAAGTTCAGCTCTTTATAGAGAT...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | TCACGCACAGTACTCCTGTCCTCTAAAGTAATCTCACATAGGACCAGAGAACGACTACAATTCACAACCTaGTCCAGAATGCCTGTTAGA | + |
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Preference number: 4 (lower is better) Translates to: SRTVLLSSKVISHRTRERLQFTT*SRMPVR Trigger: TCTAACAGGCATTCTGGAGCAGGTTGTGAATTGTAG...TCGTTCTCTGGTCCTATGTGAGATTACTTTAGAGGACAGGAGTACTGTGCGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | GAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACGATAGCAGCCAGCTGTaGTTTAGAATCACTGATTTC | + |
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Preference number: 4 (lower is better) Translates to: EWETYLSISERHNLWKGDDSSQL*FRITDF Trigger: GAAATCAGTGATTCTAAAGCACAGCTGGCTGCTATC...GTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | GATCAGTCATGCTACTTGGGTGATCAGACAGACTTAAACAATTATGAAGTGAGTATAGTAACTCTTTGGTaGCAGCATAGAGGTCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: DQSCYLGDQTDLNNYEVSIVTLW*QHRGPE Trigger: CTCCGGACCTCTATGCTGTCACCAAAGAGTTACTAT...ACTCACTTCATAATTGTTTAAGTCTGTCTGATCACCCAAGTAGCATGACTGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR TCA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATCATCAGGAAAAACCTaGATGATGCACTCCATGAGA | + |
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Preference number: 4 (lower is better) Translates to: ITGKEWETYLSISERHNLSSGKT*MMHSMR Trigger: TCTCATGGAGTGCATCATTCAGGTTTTTCCTGATGA...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR GCA 90 bp | AGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACCTAGTTAAGCCCTTTCTGGTAGAGAGGGGTCCATaGACTGATTTGCTATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SISERHNLWKGDLVKPFLVERGP*TDLLFL Trigger: TAAAAATAGCAAATCAGTGCATGGACCCCTCTCTAC...CAGAAAGGGCTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | GGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGCAAGAGATAAAGCCTTaGAATAATGTTTCCCGCGTA | + |
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Preference number: 4 (lower is better) Translates to: GKEWETYLSISERHNLWKQEIKP*NNVSRV Trigger: TACGCGGGAAACATTATTCCAAGGCTTTATCTCTTG...CTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTAACACCAAATTCATTATaGAATCTACCTGGTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ITGKEWETYLSISERHNLTPNSL*NLPGPE Trigger: CTCAGGACCAGGTAGATTCCATAATGAATTTGGTGT...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTAACTGGACTCAAGATTTaGGAGATCTTCTCGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: ITGKEWETYLSISERHNLTGLKI*EIFSNL Trigger: AAGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGT...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CCA 90 bp | TTCAATTTTCACAGATCACAGAAGTTTAAAGAGCAGATCAGTCATGCTACTTGGGTTCTGTTTCTTCACTaGACTCAAGATTTGGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: FNFHRSQKFKEQISHATWVLFLH*TQDLGD Trigger: ATCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAAC...CCAAGTAGCATGACTGATCTGCTCTTTAAACTTCTGTGATCTGTGAAAATTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| 3UTR CAA 72 bp | AAGGAGAGCTCCATTAGTAGCCAGAATAAGTGGGTTTaGCTTTCAATTTTCACAGATCACAGAAGTTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: KESSISSQNKWV*LSIFTDHRSLK Trigger: CTTTAAACTTCTGTGATCTGTGAAAATTGAAAGCAAAACCCACTTATTCTGGCTACTAATGGAGCTCTCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | GGTCCTGAAGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAGAGCATCCATCAGCTaGTTTTTGTCCAGGCATCTT | + |
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Preference number: 5 (lower is better) Translates to: GPEGVWRCWVNTSQVRNGRASIS*FLSRHL Trigger: AAGATGCCTGGACAAAAACAAGCTGATGGATGCTCT...CCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCTTCAGGACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | AGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAAACCTACAGCTCTCCAAGCATATaGGAGGCATGCTTCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: RCLEVLGKHITGKEWETYSSPSI*EACFRA Trigger: TGCTCTGAAGCATGCCTCCAATATGCTTGGAGAGCT...GTAGGTTTCCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | GTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGAAACCTACCTCAAGCTCTTCCCCATTTTaGTCTGTGTTTCGGCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: VWRCWVNTSQVRNGKPTSSSSPF*SVFRPD Trigger: GTCTGGCCGAAACACAGACAAAAATGGGGAAGAGCT...TGAGGTAGGTTTCCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | TCACGCACAGTACTCCTGTCCTCTAAAGTAATCTCACATAGGACCAGAGAACGACTGGTGATTCCCGTCTaGAGCGCAAGTGCTCCAATG | + |
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Preference number: 5 (lower is better) Translates to: SRTVLLSSKVISHRTRERLVIPV*SASAPM Trigger: CATTGGAGCACTTGCGCTCAAGACGGGAATCACCAG...TCGTTCTCTGGTCCTATGTGAGATTACTTTAGAGGACAGGAGTACTGTGCGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | GGTCCTGAAGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGTCCATCAGCTTGTTTTaGTCCAGGCATCTTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: GPEGVWRCWVNTSQVRNGSISLF*SRHLFI Trigger: GATGAAAAGATGCCTGGACAAAAACAAGCTGATGGA...CCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCTTCAGGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | GGTCCTGAAGGTGTCTGGAGGTGCTGGGTAAACACATCACAGGTAAGGAATGGGTTGTTTCTTCATCTGTaGGCTCTCCTTCATCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: GPEGVWRCWVNTSQVRNGLFLHL*ALLHQV Trigger: TACCTGATGAAGGAGAGCCAACAGATGAAGAAACAA...CCCATTCCTTACCTGTGATGTGTTTACCCAGCACCTCCAGACACCTTCAGGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS GCA 90 bp | ATCCATTTGGGAATTCTCTTTGTATCGAAAAGCCAACTGGTAAGCTaGAAATACCAAAGGTGGCAGTGTGAAGCGAATCCGCTGATTTCC | + |
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Preference number: 5 (lower is better) Translates to: IHLGILFVSKSQLVS*KYQRWQCEANPLIS Trigger: GGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTATTTGCAGCTTACCAGTTGGCTTTTCGATACAAAGAGAATTCCCAAATGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | TACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGGGAGACCTAGTTAAGCCCCATTTCTTTTCCCACTaGTCATCCATTTGGGAATTC | + |
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Preference number: 5 (lower is better) Translates to: YLSISERHNLWKGDLVKPHFFSH*SSIWEF Trigger: GAATTCCCAAATGGATGACAAGTGGGAAAAGAAATG...GGGCTTAACTAGGTCTCCCTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | ATCACAGGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTACACTGGACTCAAGATTaGGGAGATCTTCTCGAATCT | + |
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Preference number: 5 (lower is better) Translates to: ITGKEWETYLSISERHNLHWTQD*GDLLES Trigger: AGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGTG...TAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACCTGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS-3UTR CAA 90 bp | GGTAAGGAATGGGAAACCTACCTCAGCATTTCTGAAAGGCACAATCTATGGAAGATTTGGGAATTCTCTTaGTATCGAAAAGCCAACTGG | + |
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Preference number: 5 (lower is better) Translates to: GKEWETYLSISERHNLWKIWEFS*YRKANW Trigger: CCAGTTGGCTTTTCGATACAAAGAGAATTCCCAAAT...CTTCCATAGATTGTGCCTTTCAGAAATGCTGAGGTAGGTTTCCCATTCCTTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS TCA 90 bp | AGCCAGCTCAGCTTTAATCAAAGCACTGATAGTCTGGTGAGCAAATaGAAATATCTTCTGGCATTTCTTTTCCCACTTGTCATCCATTTG | + |
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Preference number: 5 (lower is better) Translates to: SQLSFNQSTDSLVSK*KYLLAFLFPLVIHL Trigger: CAAATGGATGACAAGTGGGAAAAGAAATGCCAGAAGATATTTTCATTTGCTCACCAGACTATCAGTGCTTTGATTAAAGCTGAGCTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS TCA 90 bp | GGTAATTCAGCCAGCTCAGCTTTAATCAAAGCACTGATAGTCTGGTaGGCAAATGAAAATATCTTCTGGCATTTCTTTTCCCACTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: GNSASSALIKALIVW*ANENIFWHFFSHLS Trigger: TGACAAGTGGGAAAAGAAATGCCAGAAGATATTTTCATTTGCTCACCAGACTATCAGTGCTTTGATTAAAGCTGAGCTGGCTGAATTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS TCA 72 bp | CCAACTGGTAAGCTGCAAATACCAAAGGTGGCAGTGTaGAGCGAATCCGCTGATTTCCACCAGCCCCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: PTGKLQIPKVAV*SESADFHQPQN Trigger: ATTTTGGGGCTGGTGGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTATTTGCAGCTTACCAGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS CCA 72 bp | TCGAAAAGCCAACTGGTAAGCTGCAAATACCAAAGGTaGCAGTGTGAAGCGAATCCGCTGATTTCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: SKSQLVSCKYQR*QCEANPLISTS Trigger: GCTGGTGGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTATTTGCAGCTTACCAGTTGGCTTTTCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS CAA 72 bp | CATAGATTGGCCCCTCAGACTCTGGTGATTCCCGTCTaGAGCGCAAGTGCTCCAATGTGTTGTGAAAATGCT | + |
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Preference number: 6 (lower is better) Translates to: HRLAPQTLVIPV*SASAPMCCENA Trigger: AGCATTTTCACAACACATTGGAGCACTTGCGCTCAAGACGGGAATCACCAGAGTCTGAGGGGCCAATCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS GCA 72 bp | GGAATTCTCTTTGTATCGAAAAGCCAACTGGTAAGCTaGAAATACCAAAGGTGGCAGTGTGAAGCGAATCCG | + |
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Preference number: 6 (lower is better) Translates to: GILFVSKSQLVS*KYQRWQCEANP Trigger: CGGATTCGCTTCACACTGCCACCTTTGGTATTTGCAGCTTACCAGTTGGCTTTTCGATACAAAGAGAATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS TCA 72 bp | TTTTCAAAGCCAATTTCTCCAGCAGCTAATGCTCCTTaGAGAAAAAGTCTCAGTGGTAATTCAGCCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: FSKPISPAANAP*RKSLSGNSASS Trigger: TGAGCTGGCTGAATTACCACTGAGACTTTTTCTTCAAGGAGCATTAGCTGCTGGAGAAATTGGCTTTGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS TCA 72 bp | GCCAGCTCAGCTTTAATCAAAGCACTGATAGTCTGGTaGGCAAATGAAAATATCTTCTGGCATTTCTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: ASSALIKALIVW*ANENIFWHFFS Trigger: GGAAAAGAAATGCCAGAAGATATTTTCATTTGCTCACCAGACTATCAGTGCTTTGATTAAAGCTGAGCTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS CAA 72 bp | ACTGGACTCAAGATTTGGGAGATCTTCTCGAATCTTTaGAATAAGTTGGTTCAAGACTTGAATGGTTACCGC | + |
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Preference number: 6 (lower is better) Translates to: TGLKIWEIFSNL*NKLVQDLNGYR Trigger: GCGGTAACCATTCAAGTCTTGAACCAACTTATTCAAAAGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS CAA 90 bp | TGTTTCTTCACTGGACTCAAGATTTGGGAGATCTTCTCGAATCTTTaGAATAAGTTGGTTCAAGACTTGAATGGTTACCGCATCATTTTC | + |
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Preference number: 6 (lower is better) Translates to: CFFTGLKIWEIFSNL*NKLVQDLNGYRIIF Trigger: GAAAATGATGCGGTAACCATTCAAGTCTTGAACCAACTTATTCAAAAGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGTGAAGAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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| CDS CCA 72 bp | GTTTATTTGTTCTGTTTCTTCACTGGACTCAAGATTTaGGAGATCTTCTCGAATCTTTTGAATAAGTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: VYLFCFFTGLKI*EIFSNLLNKLV Trigger: AACCAACTTATTCAAAAGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAACAAATAAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034131.10 |
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