Pregenerated sensors for VPS28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115987Ensembl transcript IDs: ENSMUST00000078803.5, ENSMUST00000229019.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGGTCTGCAGCCACTGGCTGACTGTCTGGCGGCCCTCGAAGTCTaGAGGCAGGTGGCTCATTCTGTGCATTGTCTCCATCAGCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: QGLQPLADCLAALEV*RQVAHSVHCLHQLP Trigger: CGGGAGCTGATGGAGACAATGCACAGAATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGACAGTCAGCCAGTGGCTGCAGACCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 90 bp | GAGCTGATCTCTGAGCCTTGGACCTGTCGGAAGGCAGCTTTGTACTaGACCAGGAGCCTGGAGCAGGCTGCAGTGTACTCATTGGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ELISEPWTCRKAALY*TRSLEQAAVYSLGV Trigger: CACCCCCAATGAGTACACTGCAGCCTGCTCCAGGCTCCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS GCA 90 bp | CGCCTTCTCCAGGGCCTGCATCGTCTTCACCACGGCAAAGAGCTCTaGCATGTTGTCATACTTCTCCCGCTCCCGAGCATTCTTGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: RLLQGLHRLHHGKEL*HVVILLPLPSILVE Trigger: CTCTACAAGAATGCTCGGGAGCGGGAGAAGTATGACAACATGGCAGAGCTCTTTGCCGTGGTGAAGACGATGCAGGCCCTGGAGAAGGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078803.5 |
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| CDS GCA 90 bp | TCATTGGGGGTGACACAGTCCTTGATGTACGCCTTCTCCAGGGCCTaGATCGTCTTCACCACGGCAAAGAGCTCTGCCATGTTGTCATAC | + |
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Preference number: 5 (lower is better) Translates to: SLGVTQSLMYAFSRA*IVFTTAKSSAMLSY Trigger: GTATGACAACATGGCAGAGCTCTTTGCCGTGGTGAAGACGATGCAGGCCCTGGAGAAGGCGTACATCAAGGACTGTGTCACCCCCAATGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078803.5 |
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| CDS CCA 90 bp | CTGAACTTTCGGCAAAATTCATCAATGGAGCTGATCTCTGAGCCTTaGACCTGTCGGAAGGCAGCTTTGTACTGGACCAGGAGCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LNFRQNSSMELISEP*TCRKAALYWTRSLE Trigger: CTCCAGGCTCCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTCCATTGATGAATTTTGCCGAAAGTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS TCA 90 bp | GTCCAGTCTGAACTTTCGGCAAAATTCATCAATGGAGCTGATCTCTaGGCCTTGGACCTGTCGGAAGGCAGCTTTGTACTGGACCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: VQSELSAKFINGADL*ALDLSEGSFVLDQE Trigger: CTCCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTCCATTGATGAATTTTGCCGAAAGTTCAGACTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 90 bp | TTTGATAGTGATGGGCCGGTCCTCTTTGATCCTCTCCATAGCAAGTaGGCAGTCCAGTCTGAACTTTCGGCAAAATTCATCAATGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: FDSDGPVLFDPLHSK*AVQSELSAKFINGA Trigger: AGCTCCATTGATGAATTTTGCCGAAAGTTCAGACTGGACTGCCCACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS GCA 72 bp | TCCAGCTCGTCAGAGGCCGACATACCACTCAGGGTCTaGAGCCACTGGCTGACTGTCTGGCGGCCCTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSSSEADIPLRV*SHWLTVWRPSK Trigger: CTTCGAGGGCCGCCAGACAGTCAGCCAGTGGCTGCAGACCCTGAGTGGTATGTCGGCCTCTGACGAGCTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | CTGACTGTCTGGCGGCCCTCGAAGTCTGGAGGCAGGTaGCTCATTCTGTGCATTGTCTCCATCAGCTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: LTVWRPSKSGGR*LILCIVSISSR Trigger: GCGGGAGCTGATGGAGACAATGCACAGAATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGACAGTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | ATACCACTCAGGGTCTGCAGCCACTGGCTGACTGTCTaGCGGCCCTCGAAGTCTGGAGGCAGGTGGCTCATT | + |
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Preference number: 6 (lower is better) Translates to: IPLRVCSHWLTV*RPSKSGGRWLI Trigger: AATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGACAGTCAGCCAGTGGCTGCAGACCCTGAGTGGTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | TCTGGCGGCCCTCGAAGTCTGGAGGCAGGTGGCTCATTCTGTGCATaGTCTCCATCAGCTCCCGCAGGTCTGGCTGAATCTCGTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: SGGPRSLEAGGSFCA*SPSAPAGLAESRPW Trigger: CCATGGACGAGATTCAGCCAGACCTGCGGGAGCTGATGGAGACAATGCACAGAATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | CAGCCACTGGCTGACTGTCTGGCGGCCCTCGAAGTCTaGAGGCAGGTGGCTCATTCTGTGCATTGTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: QPLADCLAALEV*RQVAHSVHCLH Trigger: ATGGAGACAATGCACAGAATGAGCCACCTGCCTCCAGACTTCGAGGGCCGCCAGACAGTCAGCCAGTGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | AGCCTGGAGCAGGCTGCAGTGTACTCATTGGGGGTGACACAGTCCTaGATGTACGCCTTCTCCAGGGCCTGCATCGTCTTCACCACGGCA | + |
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Preference number: 6 (lower is better) Translates to: SLEQAAVYSLGVTQS*MYAFSRACIVFTTA Trigger: TGCCGTGGTGAAGACGATGCAGGCCCTGGAGAAGGCGTACATCAAGGACTGTGTCACCCCCAATGAGTACACTGCAGCCTGCTCCAGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | TCTGAGCCTTGGACCTGTCGGAAGGCAGCTTTGTACTaGACCAGGAGCCTGGAGCAGGCTGCAGTGTACTCA | + |
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Preference number: 6 (lower is better) Translates to: SEPWTCRKAALY*TRSLEQAAVYS Trigger: TGAGTACACTGCAGCCTGCTCCAGGCTCCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS GCA 72 bp | CAGGGCCTGCATCGTCTTCACCACGGCAAAGAGCTCTaGCATGTTGTCATACTTCTCCCGCTCCCGAGCATT | + |
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Preference number: 6 (lower is better) Translates to: QGLHRLHHGKEL*HVVILLPLPSI Trigger: AATGCTCGGGAGCGGGAGAAGTATGACAACATGGCAGAGCTCTTTGCCGTGGTGAAGACGATGCAGGCCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078803.5 |
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| CDS GCA 72 bp | GTGACACAGTCCTTGATGTACGCCTTCTCCAGGGCCTaGATCGTCTTCACCACGGCAAAGAGCTCTGCCATG | + |
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Preference number: 6 (lower is better) Translates to: VTQSLMYAFSRA*IVFTTAKSSAM Trigger: CATGGCAGAGCTCTTTGCCGTGGTGAAGACGATGCAGGCCCTGGAGAAGGCGTACATCAAGGACTGTGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078803.5 |
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| CDS CAA 72 bp | CAGGCTGCAGTGTACTCATTGGGGGTGACACAGTCCTaGATGTACGCCTTCTCCAGGGCCTGCATCGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: QAAVYSLGVTQS*MYAFSRACIVF Trigger: GAAGACGATGCAGGCCCTGGAGAAGGCGTACATCAAGGACTGTGTCACCCCCAATGAGTACACTGCAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | AAAGGCGTTGTAAGCGGACTCCAGATCGAAGAGCATCTGGCGAACTaGAGAGTCATCCAGCTCGTCAGAGGCCGACATACCACTCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: KGVVSGLQIEEHLAN*RVIQLVRGRHTTQG Trigger: ACCCTGAGTGGTATGTCGGCCTCTGACGAGCTGGATGACTCTCAAGTTCGCCAGATGCTCTTCGATCTGGAGTCCGCTTACAACGCCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 72 bp | CCCTTGTCGTCTTTGATAGTGATGGGCCGGTCCTCTTaGATCCTCTCCATAGCAAGTGGGCAGTCCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PLSSLIVMGRSS*ILSIASGQSSL Trigger: CAGACTGGACTGCCCACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | CGGCAAAATTCATCAATGGAGCTGATCTCTGAGCCTTaGACCTGTCGGAAGGCAGCTTTGTACTGGACCAGG | + |
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Preference number: 6 (lower is better) Translates to: RQNSSMELISEP*TCRKAALYWTR Trigger: CCTGGTCCAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTCCATTGATGAATTTTGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 72 bp | TCTGCAATGCAGCGGTTGAGATTGCCCTTGTCGTCTTaGATAGTGATGGGCCGGTCCTCTTTGATCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SAMQRLRLPLSS*IVMGRSSLILS Trigger: GGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | TTGAGATTGCCCTTGTCGTCTTTGATAGTGATGGGCCGGTCCTCTTaGATCCTCTCCATAGCAAGTGGGCAGTCCAGTCTGAACTTTCGG | + |
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Preference number: 6 (lower is better) Translates to: LRLPLSSLIVMGRSS*ILSIASGQSSLNFR Trigger: CCGAAAGTTCAGACTGGACTGCCCACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CCA 72 bp | GATGGGCCGGTCCTCTTTGATCCTCTCCATAGCAAGTaGGCAGTCCAGTCTGAACTTTCGGCAAAATTCATC | + |
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Preference number: 6 (lower is better) Translates to: DGPVLFDPLHSK*AVQSELSAKFI Trigger: GATGAATTTTGCCGAAAGTTCAGACTGGACTGCCCACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 72 bp | AAGAGCGAAACAACATCTGCAATGCAGCGGTTGAGATaGCCCTTGTCGTCTTTGATAGTGATGGGCCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: KSETTSAMQRLR*PLSSLIVMGRS Trigger: GGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | ATGAAGAGCGAAACAACATCTGCAATGCAGCGGTTGAGATTGCCCTaGTCGTCTTTGATAGTGATGGGCCGGTCCTCTTTGATCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: MKSETTSAMQRLRLP*SSLIVMGRSSLILS Trigger: GGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 72 bp | GAAACAACATCTGCAATGCAGCGGTTGAGATTGCCCTaGTCGTCTTTGATAGTGATGGGCCGGTCCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: ETTSAMQRLRLP*SSLIVMGRSSL Trigger: CAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | GAAACAACATCTGCAATGCAGCGGTTGAGATTGCCCTTGTCGTCTTaGATAGTGATGGGCCGGTCCTCTTTGATCCTCTCCATAGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: ETTSAMQRLRLPLSS*IVMGRSSLILSIAS Trigger: ACTTGCTATGGAGAGGATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | TCCATGACTGTAATGAAGAGCGAAACAACATCTGCAATGCAGCGGTaGAGATTGCCCTTGTCGTCTTTGATAGTGATGGGCCGGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SMTVMKSETTSAMQR*RLPLSSLIVMGRSS Trigger: AGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTTCATTACAGTCATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS TCA 72 bp | GAACTTTCGGCAAAATTCATCAATGGAGCTGATCTCTaGGCCTTGGACCTGTCGGAAGGCAGCTTTGTACTG | + |
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Preference number: 6 (lower is better) Translates to: ELSAKFINGADL*ALDLSEGSFVL Trigger: CAGTACAAAGCTGCCTTCCGACAGGTCCAAGGCTCAGAGATCAGCTCCATTGATGAATTTTGCCGAAAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 90 bp | ACTGTAATGAAGAGCGAAACAACATCTGCAATGCAGCGGTTGAGATaGCCCTTGTCGTCTTTGATAGTGATGGGCCGGTCCTCTTTGATC | + |
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Preference number: 6 (lower is better) Translates to: TVMKSETTSAMQRLR*PLSSLIVMGRSSLI Trigger: GATCAAAGAGGACCGGCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTTCATTACAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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| CDS CAA 72 bp | GTAATGAAGAGCGAAACAACATCTGCAATGCAGCGGTaGAGATTGCCCTTGTCGTCTTTGATAGTGATGGGC | + |
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Preference number: 6 (lower is better) Translates to: VMKSETTSAMQR*RLPLSSLIVMG Trigger: GCCCATCACTATCAAAGACGACAAGGGCAATCTCAACCGCTGCATTGCAGATGTTGTTTCGCTCTTCATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078803.5 ENSMUST00000229019.2 |
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