Pregenerated sensors for VPS26C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022898Ensembl transcript IDs: ENSMUST00000023615.7, ENSMUST00000125229.9
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGCTGGTTGCTaGCTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTGGGGG | + |
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Preference number: 1 (lower is better) Translates to: SLEGITDSIRELAGC*LFAVRSLGKIEGWG Trigger: CCCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 90 bp | ATACCCTCCATACAGTATGAGTTACAGTGTGAGGCTAAAGCCATGTaGCCCAGGGGGTCAGGGACAGGCCAAGGCCATTGCCCTTCCTCA | + |
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Preference number: 1 (lower is better) Translates to: IPSIQYELQCEAKAM*PRGSGTGQGHCPSS Trigger: TGAGGAAGGGCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCTTTAGCCTCACACTGTAACTCATACTGTATGGAGGGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CCA 90 bp | CTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGCTaGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGG | + |
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Preference number: 1 (lower is better) Translates to: LSLLGGDYRLNQRAC*LLTLCCQESGQDRG Trigger: CCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 90 bp | TCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTaGTGGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGA | + |
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Preference number: 1 (lower is better) Translates to: SLSLLGGDYRLNQRA*WLLTLCCQESGQDR Trigger: TCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CCA 90 bp | AGAAGGGAAAACTCCGTATTCCCAGATGAAGTCACTGTCACTCCTTaGAGGGGATTACAGACTCAATCAGAGAGCTTGCTGGTTGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: RRENSVFPDEVTVTP*RGLQTQSESLLVAD Trigger: GTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATCTGGGAATACGGAGTTTTCCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 90 bp | CCTTGTCTCTCAATACATTCTGGGAATATGGCAGCATTAACTGTGTaGCAGTACCACACACACAAACACTCCAGCAACAGCCACTGTTCA | + |
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Preference number: 1 (lower is better) Translates to: PCLSIHSGNMAALTV*QYHTHKHSSNSHCS Trigger: TGAACAGTGGCTGTTGCTGGAGTGTTTGTGTGTGTGGTACTGGCACACAGTTAATGCTGCCATATTCCCAGAATGTATTGAGAGACAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 90 bp | ACACAAACACTCCAGCAACAGCCACTGTTCACCATTCTCCCTCTGTaGGAACCAGGACTATTTGTTGGTTTTTATTTCCAGTGCCCTAAA | + |
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Preference number: 1 (lower is better) Translates to: TQTLQQQPLFTILPL*EPGLFVGFYFQCPK Trigger: TTTAGGGCACTGGAAATAAAAACCAACAAATAGTCCTGGTTCTCACAGAGGGAGAATGGTGAACAGTGGCTGTTGCTGGAGTGTTTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 90 bp | CAGAACCTAGTACTTACCAGTAGTCCATGTGCATTCTTCCCCTTATaGAAGCACCTTGTCTCTCAATACATTCTGGGAATATGGCAGCAT | + |
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Preference number: 1 (lower is better) Translates to: QNLVLTSSPCAFFPL*KHLVSQYILGIWQH Trigger: ATGCTGCCATATTCCCAGAATGTATTGAGAGACAAGGTGCTTGCATAAGGGGAAGAATGCACATGGACTACTGGTAAGTACTAGGTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 90 bp | AAACACTATCAAGATGTCAAGAAGGGAAAACTCCGTATTCCCAGATaGAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGA | + |
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Preference number: 1 (lower is better) Translates to: KHYQDVKKGKLRIPR*SHCHSLEGITDSIR Trigger: TCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATCTGGGAATACGGAGTTTTCCCTTCTTGACATCTTGATAGTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | GGGGTGGGGGCTCTCTTCTGCCTCCATGATCTCACTAGGCAGCCCATCTTAATGTCCAGACGTGAGGGCTaGGGTAAGGCACCTGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: GVGALFCLHDLTRQPILMSRREG*GKAPAG Trigger: CCCTGCAGGTGCCTTACCTCAGCCCTCACGTCTGGA...CATTAAGATGGGCTGCCTAGTGAGATCATGGAGGCAGAAGAGAGCCCCCACCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CCA 90 bp | CAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCAGAGGGTCAATGTCCACATaGCCATTCTGGCTCTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: QGQAKAIALPQHGVLSLRGSMST*PFWLSP Trigger: AGGGGAGAGCCAGAATGGCCATGTGGACATTGACCC...TCTGAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | GTGAGGCTAAAGCCATGTGACCCAGGGGGTCAGGGACAGGCCAAGGCCATTGCCCTCCGTATTCCCAGATaGAGTCACTGTCACTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: VRLKPCDPGGQGQAKAIALRIPR*SHCHSL Trigger: CAAGGAGTGACAGTGACTTCATCTGGGAATACGGAG...GGCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCTTTAGCCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CCA 90 bp | GTGAGGCTAAAGCCATGTGACCCAGGGGGTCAGGGACAGGCCAAGGCCATTGCCGTCACTGTCACTCCTTaGAGGGGATTACAGACTCAA | + |
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Preference number: 2 (lower is better) Translates to: VRLKPCDPGGQGQAKAIAVTVTP*RGLQTQ Trigger: TTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGAC...GGCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCTTTAGCCTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | CTCTCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTGTGAAGCTCTCTCTTTaGCGTTCTGCAAGGTTTCCG | + |
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Preference number: 2 (lower is better) Translates to: LSCQGLRDSAVSGVQMSSVKLSL*RSARFP Trigger: CGGAAACCTTGCAGAACGTCAAAGAGAGAGCTTCAC...AGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| 3UTR-3UTR GCA 90 bp | CCAGAACCTGTGAAGGCAGGCCAGCTGGTGTACAGGGCGCTCATTAACTCTGGACTCAATCAGAGAGCTTaGTGGTTGCTGACTCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: PEPVKAGQLVYRALINSGLNQRA*WLLTLC Trigger: GCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAG...TCCAGAGTTAATGAGCGCCCTGTACACCAGCTGGCCTGCCTTCACAGGTTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 90 bp | TCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGCTGGTaGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: SLLGGDYRLNQRACW*LTLCCQESGQDRGV Trigger: CACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | TGCACACCCACAGGTCTCCACCCGGACCAACTGAAGCTCTATGCTCCGGATAGCGAAGAATTTGGGAAGTaGAGCTCTCTCTTTGACGTT | + |
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Preference number: 2 (lower is better) Translates to: CTPTGLHPDQLKLYAPDSEEFGK*SSLFDV Trigger: AACGTCAAAGAGAGAGCTTCACTTCCCAAATTCTTC...GCTATCCGGAGCATAGAGCTTCAGTTGGTCCGGGTGGAGACCTGTGGGTGTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| 3UTR-3UTR GCA 90 bp | GGTCAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCGGTTTTTATTTCCAGTaGCCTAAAACATTTAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: GQGQAKAIALPQHGVLSLGFYFQ*PKTFRG Trigger: GCCTCTAAATGTTTTAGGGCACTGGAAATAAAAACC...GAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | TTCCCAGATGAAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGCCCCATGTGAGCAGATaGCTGGGTCAATGTCCACAT | + |
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Preference number: 2 (lower is better) Translates to: FPDEVTVTPWRGLQTQSEPHVSR*LGQCPH Trigger: ATGTGGACATTGACCCAGTCATCTGCTCACATGGGG...CTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATCTGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTAATCTCTCTTTGACGTTCTaGAAGGTTTCCGGAGTGATC | + |
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Preference number: 2 (lower is better) Translates to: SCQGLRDSAVSGVQMSSNLSLTF*KVSGVI Trigger: GATCACTCCGGAAACCTTGCAGAACGTCAAAGAGAG...ATTAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| 3UTR-3UTR CCA 90 bp | CCAGAACCTGTGAAGGCAGGCCAGCTGGTGTACAGGGCGCTCATTAACTCTGGAACCAGGACTATTTGTTaGTTTTTATTTCCAGTGCCC | + |
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Preference number: 2 (lower is better) Translates to: PEPVKAGQLVYRALINSGTRTIC*FLFPVP Trigger: GGGCACTGGAAATAAAAACCAACAAATAGTCCTGGT...TCCAGAGTTAATGAGCGCCCTGTACACCAGCTGGCCTGCCTTCACAGGTTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | GGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAGAAATCCTGTTGAAGATGTATGCTGCTaGTGTGATGCCTGTGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: GAIGNAFCDLATHRRNPVEDVCC*CDACEQ Trigger: CTGCTCACAGGCATCACATCAGCAGCATACATCTTC...AACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | GACACACTGCTTAATGAACCTAAGAAGAAACAGGCACATCTGGAGCCATTGGGAGGCCATGAGAAGACATaGAGATGTATGCTGCTGATG | + |
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Preference number: 2 (lower is better) Translates to: DTLLNEPKKKQAHLEPLGGHEKT*RCMLLM Trigger: CATCAGCAGCATACATCTTCATGTCTTCTCATGGCC...TCCCAATGGCTCCAGATGTGCCTGTTTCTTCTTAGGTTCATTAAGCAGTGTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR TCA 90 bp | CTCTTCTGCCTCCATGATCTCACTAGGCAGCCCATCTTAATGTGCAGACACACTCAAGCTTTGAGGCCATaGGAAGACATGAAGATGTAT | + |
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Preference number: 2 (lower is better) Translates to: LFCLHDLTRQPILMCRHTQALRP*EDMKMY Trigger: ATACATCTTCATGTCTTCTCATGGCCTCAAAGCTTG...AGTGTGTCTGCACATTAAGATGGGCTGCCTAGTGAGATCATGGAGGCAGAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR GCA 90 bp | AATTATGTAATCAAAGATGACTTTTCCTTAGACTCACTAGAAAGTACGGCCCACGCATTCTTCCCCTTATaGAAGCACCTTGTCTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: NYVIKDDFSLDSLESTAHAFFPL*KHLVSQ Trigger: TTGAGAGACAAGGTGCTTGCATAAGGGGAAGAATGC...GTGGGCCGTACTTTCTAGTGAGTCTAAGGAAAAGTCATCTTTGATTACATAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 72 bp | CAGGAGGCTGCCAGTCGGGCCTGCTTTGCCTCGGCCTaGCCCCCAGAACCTGTGAAGGCAGGCCAGCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: QEAASRACFASA*PPEPVKAGQLV Trigger: CACCAGCTGGCCTGCCTTCACAGGTTCTGGGGGGCAGGCCGAGGCAAAGCAGGCCCGACTGGCAGCCTCCTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CCA 72 bp | CAGCAGTGCCCCAGTTCCCTCAGCTGTTCAGAACAGTaGGAGTGCAGCCAGGAGGCTGCCAGTCGGGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: QQCPSSLSCSEQ*ECSQEAASRAC Trigger: GCAGGCCCGACTGGCAGCCTCCTGGCTGCACTCCCACTGTTCTGAACAGCTGAGGGAACTGGGGCACTGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CAA 90 bp | CAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCAGACAGAGAGCTTGCTGGTaGCTGACTCTTTGCTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: QGQAKAIALPQHGVLSLRQRACW*LTLCCQ Trigger: CTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTG...TCTGAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CCA 72 bp | CTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTaGGGGCTCTCTTCTGCCTCCATGATCTCACTAGGC | + |
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Preference number: 3 (lower is better) Translates to: LFAVRSLGKIEG*GLSSASMISLG Trigger: GCCTAGTGAGATCATGGAGGCAGAAGAGAGCCCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CAA 90 bp | CAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCAGAACTCAATCAGAGAGCTaGCTGGTTGCTGACTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: QGQAKAIALPQHGVLSLRTQSES*LVADSL Trigger: CAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGT...TCTGAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 72 bp | ATACAGTATGAGTTACAGTGTGAGGCTAAAGCCATGTaGCCCAGGGGGTCAGGGACAGGCCAAGGCCATTGC | + |
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Preference number: 3 (lower is better) Translates to: IQYELQCEAKAM*PRGSGTGQGHC Trigger: GCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCTTTAGCCTCACACTGTAACTCATACTGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 72 bp | AGACTCAATCAGAGAGCTTGCTGGTTGCTGACTCTTTaGTGTCAGGAGTCTGGGCAAGATAGAGGGGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: RLNQRACWLLTL*CQESGQDRGVG Trigger: CCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 72 bp | CTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTaGTGGTTGCTGACTCTTTGCTGTCAGGAGTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: LLGGDYRLNQRA*WLLTLCCQESG Trigger: CCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CCA 72 bp | CTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGCTaGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAA | + |
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Preference number: 3 (lower is better) Translates to: LGGDYRLNQRAC*LLTLCCQESGQ Trigger: TTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CAA 90 bp | AAGCTCTATGCTCCGGATAGCAGCATCCGAGTGTTCCACCACCAGCTCTCCTGTCCTCTAATGAAGAATTaGGGAAGTGAAGCTCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: KLYAPDSSIRVFHHQLSCPLMKN*GSEALS Trigger: AGAGAGAGCTTCACTTCCCAAATTCTTCATTAGAGG...ACAGGAGAGCTGGTGGTGGAACACTCGGATGCTGCTATCCGGAGCATAGAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCTGCCTCCATGATCTCACTAGGCAGCCCATCTTAATGTGCAGACACACTACGCTTTCTGTGATCTaGCAACACACAGGAGAAATC | + |
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Preference number: 3 (lower is better) Translates to: LFCLHDLTRQPILMCRHTTLSVI*QHTGEI Trigger: GATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGT...AGTGTGTCTGCACATTAAGATGGGCTGCCTAGTGAGATCATGGAGGCAGAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 72 bp | CAAGATGTCAAGAAGGGAAAACTCCGTATTCCCAGATaGAGTCACTGTCACTCCTTGGAGGGGATTACAGAC | + |
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Preference number: 3 (lower is better) Translates to: QDVKKGKLRIPR*SHCHSLEGITD Trigger: GTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATCTGGGAATACGGAGTTTTCCCTTCTTGACATCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR TCA 72 bp | CTCCAGCAACAGCCACTGTTCACCATTCTCCCTCTGTaGGAACCAGGACTATTTGTTGGTTTTTATTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: LQQQPLFTILPL*EPGLFVGFYFQ Trigger: CTGGAAATAAAAACCAACAAATAGTCCTGGTTCTCACAGAGGGAGAATGGTGAACAGTGGCTGTTGCTGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR GCA 72 bp | GTACTTACCAGTAGTCCATGTGCATTCTTCCCCTTATaGAAGCACCTTGTCTCTCAATACATTCTGGGAATA | + |
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Preference number: 3 (lower is better) Translates to: VLTSSPCAFFPL*KHLVSQYILGI Trigger: TATTCCCAGAATGTATTGAGAGACAAGGTGCTTGCATAAGGGGAAGAATGCACATGGACTACTGGTAAGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR-3UTR CAA 90 bp | AATTATGTAATCAAAGATGACTTTTCCTTAGACTCACTAGAAAGTACGGCCCACCCTTATGCAAGCACCTaGTCTCTCAATACATTCTGG | + |
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Preference number: 3 (lower is better) Translates to: NYVIKDDFSLDSLESTAHPYAST*SLNTFW Trigger: CCAGAATGTATTGAGAGACAAGGTGCTTGCATAAGG...GTGGGCCGTACTTTCTAGTGAGTCTAAGGAAAAGTCATCTTTGATTACATAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR GCA 90 bp | GGTCAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCCTCTGTGGCATCTCGTaGATAGCCTTCTGCACACCC | + |
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Preference number: 4 (lower is better) Translates to: GQGQAKAIALPQHGVLSLLCGIS*IAFCTP Trigger: GGGTGTGCAGAAGGCTATGCACGAGATGCCACAGAG...GAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CCA 90 bp | TGCACACCCACAGGTCTCCACCCGGACCAACTGAAGCTCTATGCTCCGGATAGCCGGGGCCTCTTCCTCTaGCTGAGTCATGACTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CTPTGLHPDQLKLYAPDSRGLFL*LSHDWA Trigger: AGCCCAGTCATGACTCAGCCAGAGGAAGAGGCCCCG...GCTATCCGGAGCATAGAGCTTCAGTTGGTCCGGGTGGAGACCTGTGGGTGTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR GCA 90 bp | GGTCAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCAAAGAGACTCCCTGGTaGTGGACTGAGTCCTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: GQGQAKAIALPQHGVLSLKETPW*WTESLL Trigger: TAGCAAGGACTCAGTCCAGCACCAGGGAGTCTCTTT...GAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | TGGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTGGGGGCTCCAGTGTTGGACAGGTaGACAGTCTGGGGAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: WLLTLCCQESGQDRGVGAPVLDR*TVWGRP Trigger: TGGTCTTCCCCAGACTGTTCACCTGTCCAACACTGG...AGCCCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | TGTGAGCAGGTGGTCTGTGTGACGTCCCCATGTGAGCAGATGACTGGGTCAATGTCCCTGGTGCTGGACTaGGTCCTTGCTAGAGATGAC | + |
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Preference number: 4 (lower is better) Translates to: CEQVVCVTSPCEQMTGSMSLVLD*VLARDD Trigger: GTCATCTCTAGCAAGGACTCAGTCCAGCACCAGGGA...CATTGACCCAGTCATCTGCTCACATGGGGACGTCACACAGACCACCTGCTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | AAGCTCTATGCTCCGGATAGCAGCATCCGAGTGTTCCACCACCAGCTCTCCTGTTCCCTGGTGCTGGACTaGGTCCTTGCTAGAGATGAC | + |
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Preference number: 4 (lower is better) Translates to: KLYAPDSSIRVFHHQLSCSLVLD*VLARDD Trigger: GTCATCTCTAGCAAGGACTCAGTCCAGCACCAGGGA...ACAGGAGAGCTGGTGGTGGAACACTCGGATGCTGCTATCCGGAGCATAGAGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR GCA 90 bp | CAGGTGGTCTGTGTGACGTCCCCATGTGAGCAGATGACTGGGTCAATGTCCACATCTCCTGTCAGGGGCTaGGTGATAGCGCAGTTAGTG | + |
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Preference number: 4 (lower is better) Translates to: QVVCVTSPCEQMTGSMSTSPVRG*VIAQLV Trigger: CACTAACTGCGCTATCACGCAGCCCCTGACAGGAGA...TGTGGACATTGACCCAGTCATCTGCTCACATGGGGACGTCACACAGACCACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CCA 90 bp | CTCTCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTGAGACTCCCTGGTGCTaGACTGAGTCCTTGCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LSCQGLRDSAVSGVQMSSETPWC*TESLLE Trigger: CTCTAGCAAGGACTCAGTCCAGCACCAGGGAGTCTC...AGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR TCA 90 bp | GGGGTGGGGGCTCTCTTCTGCCTCCATGATCTCACTAGGCAGCCCATCTTAATGGTGAAGCTCTCTCTTTaGCGTTCTGCAAGGTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: GVGALFCLHDLTRQPILMVKLSL*RSARFP Trigger: CGGAAACCTTGCAGAACGTCAAAGAGAGAGCTTCAC...CATTAAGATGGGCTGCCTAGTGAGATCATGGAGGCAGAAGAGAGCCCCCACCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR GCA 90 bp | GAATTCACAGGTCTTGGTCAGGTCCTTGGCCAACAGGGACCGCCGCATGTCACAAAAGAGACTCCCTGGTaGTGGACTGAGTCCTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: EFTGLGQVLGQQGPPHVTKETPW*WTESLL Trigger: TAGCAAGGACTCAGTCCAGCACCAGGGAGTCTCTTT...TGTGACATGCGGCGGTCCCTGTTGGCCAAGGACCTGACCAAGACCTGTGAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR GCA 90 bp | CCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTAATGCATACAGGACCTTGCTaGCTTTCACAAGCAGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: PVRGCVIAQLVEFRCPLMHTGPC*LSQAVG Trigger: TCCCACTGCTTGTGAAAGGCAGCAAGGTCCTGTATG...CATTAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CCA 90 bp | TCTCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTATGGCTGAGTCATGACTaGGCTCTGCTCCTGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: SPVRGCVIAQLVEFRCPLWLSHD*ALLLNV Trigger: AACATTCAGGAGCAGAGCCCAGTCATGACTCAGCCA...TAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR TCA 90 bp | CTCTTCTGCCTCCATGATCTCACTAGGCAGCCCATCTTAATGTGCAGACACACTATGAGGTGGTCAGCATaGAGGAGGACCACCACATTG | + |
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Preference number: 4 (lower is better) Translates to: LFCLHDLTRQPILMCRHTMRWSA*RRTTTL Trigger: CAATGTGGTGGTCCTCCTTCATGCTGACCACCTCAT...AGTGTGTCTGCACATTAAGATGGGCTGCCTAGTGAGATCATGGAGGCAGAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR GCA 90 bp | GATGAAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGTCGTGCATAGCCTTCTaGACACCCACAGGTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: DEVTVTPWRGLQTQSESLSCIAF*TPTGLH Trigger: GTGGAGACCTGTGGGTGTGCAGAAGGCTATGCACGA...CAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CCA 90 bp | GGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAGAAATCCTGTTGAGACTCCCTGGTGCTaGACTGAGTCCTTGCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: GAIGNAFCDLATHRRNPVETPWC*TESLLE Trigger: CTCTAGCAAGGACTCAGTCCAGCACCAGGGAGTCTC...AACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTAATCCTCAGTCTTGCCACTaGGAATCTTTCCTGGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SCQGLRDSAVSGVQMSSNPQSCH*ESFLAS Trigger: TGAAGCCAGGAAAGATTCCCAGTGGCAAGACTGAGG...ATTAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CCA 90 bp | GGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAGAAATCCTGTTGGTGGTCTCCAGTGTTaGACAGGTGAACAGTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GAIGNAFCDLATHRRNPVGGLQC*TGEQSG Trigger: CCCAGACTGTTCACCTGTCCAACACTGGAGACCACC...AACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | GGAGGGGATTACAGACTCAATCAGAGAGCTTGCTGGTaGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: GGDYRLNQRACW*LTLCCQESGQD Trigger: ATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | ACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTaGCTGGTTGCTGACTCTTTGCTGTCAGGAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TPWRGLQTQSES*LVADSLLSGVW Trigger: CCAGACTCCTGACAGCAAAGAGTCAGCAACCAGCAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | TCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTAATAGCATTTCCCCGGCGTaGTACACTTTATTCGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SCQGLRDSAVSGVQMSSNSISPA*YTLFAL Trigger: AAGAGCGAATAAAGTGTATCACGCCGGGGAAATGCT...ATTAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CCA 90 bp | GATGAAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGGCCTTTCACAAGCAGTaGGAACTCAAAGGGGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: DEVTVTPWRGLQTQSESLAFHKQ*ELKGDL Trigger: GAGGTCCCCTTTGAGTTCCCACTGCTTGTGAAAGGC...CAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CCA 90 bp | GATGAAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTTGCCTCAGTCTTGCCACTaGGAATCTTTCCTGGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: DEVTVTPWRGLQTQSESLPQSCH*ESFLAS Trigger: TGAAGCCAGGAAAGATTCCCAGTGGCAAGACTGAGG...CAAGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | GCACATCTGGAGCCATTGGGAACGCTTTCTGTGATCTaGCAACACACAGGAGAAATCCTGTTGCATTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: AHLEPLGTLSVI*QHTGEILLHSR Trigger: TCTGGAATGCAACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCCAGATGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | CAGATGAAGTCACTGTCACTCCTTGGAGGGGATTACAGACTCAATCAGAGAGCTAGCATTTCCCCGGCGTaGTACACTTTATTCGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QMKSLSLLGGDYRLNQRASISPA*YTLFAL Trigger: AAGAGCGAATAAAGTGTATCACGCCGGGGAAATGCT...AGCTCTCTGATTGAGTCTGTAATCCCCTCCAAGGAGTGACAGTGACTTCATCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | GGACCAACAGAACAACAGCGAGATTCAAAGGAAGCAAAGTATTGCAACATACCCCCTCAAACTCCACTTTaGAGTTGGTGGTCTCCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: GPTEQQRDSKEAKYCNIPPQTPL*SWWSPV Trigger: CACTGGAGACCACCAACTTCAAAGTGGAGTTTGAGG...GGGTATGTTGCAATACTTTGCTTCCTTTGAATCTCGCTGTTGTTCTGTTGGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR TCA 90 bp | GGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAGAAATCCTGTTGAAGAATTTGGGAAGTaGAGCTCTCTCTTTGACGTT | + |
|
Preference number: 4 (lower is better) Translates to: GAIGNAFCDLATHRRNPVEEFGK*SSLFDV Trigger: AACGTCAAAGAGAGAGCTTCACTTCCCAAATTCTTC...AACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | AATGAACCTAAGAAGAAACAGGCACATCTGGAGCCATaGGGAACGCTTTCTGTGATCTTGCAACACACAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NEPKKKQAHLEP*GTLSVILQHTG Trigger: TCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCCAGATGTGCCTGTTTCTTCTTAGGTTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | GTAGTCCATGTGCATTCTTCCCCTTATGCAAGCACCTaGTCTCTCAATACATTCTGGGAATATGGCAGCATT | + |
|
Preference number: 4 (lower is better) Translates to: VVHVHSSPYAST*SLNTFWEYGSI Trigger: AATGCTGCCATATTCCCAGAATGTATTGAGAGACAAGGTGCTTGCATAAGGGGAAGAATGCACATGGACTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | CAGTTAGTGGAGTTCAGATGTCCTCTAATGAAGAATTaGGGAAGTGAAGCTCTCTCTTTGACGTTCTGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: QLVEFRCPLMKN*GSEALSLTFCK Trigger: CTTGCAGAACGTCAAAGAGAGAGCTTCACTTCCCAAATTCTTCATTAGAGGACATCTGAACTCCACTAACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR GCA 90 bp | AATTATGTAATCAAAGATGACTTTTCCTTAGACTCACTAGAAAGTACGGCCCACCATACAGGACCTTGCTaGCTTTCACAAGCAGTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: NYVIKDDFSLDSLESTAHHTGPC*LSQAVG Trigger: TCCCACTGCTTGTGAAAGGCAGCAAGGTCCTGTATG...GTGGGCCGTACTTTCTAGTGAGTCTAAGGAAAAGTCATCTTTGATTACATAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR GCA 90 bp | AATTATGTAATCAAAGATGACTTTTCCTTAGACTCACTAGAAAGTACGGCCCACCTCTCTTTGACGTTCTaGAAGGTTTCCGGAGTGATC | + |
|
Preference number: 4 (lower is better) Translates to: NYVIKDDFSLDSLESTAHLSLTF*KVSGVI Trigger: GATCACTCCGGAAACCTTGCAGAACGTCAAAGAGAG...GTGGGCCGTACTTTCTAGTGAGTCTAAGGAAAAGTCATCTTTGATTACATAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | TCACCATTCTCCCTCTGTGAGAACCAGGACTATTTGTaGGTTTTTATTTCCAGTGCCCTAAAACATTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: SPFSLCENQDYL*VFISSALKHLE Trigger: CTCTAAATGTTTTAGGGCACTGGAAATAAAAACCAACAAATAGTCCTGGTTCTCACAGAGGGAGAATGGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | TGTTCACCATTCTCCCTCTGTGAGAACCAGGACTATTaGTTGGTTTTTATTTCCAGTGCCCTAAAACATTTA | + |
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Preference number: 4 (lower is better) Translates to: CSPFSLCENQDY*LVFISSALKHL Trigger: TAAATGTTTTAGGGCACTGGAAATAAAAACCAACAAATAGTCCTGGTTCTCACAGAGGGAGAATGGTGAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| 3UTR CAA 72 bp | TTCCTTAGACTCACTAGAAAGTACGGCCCACATTTTTaGGGTACTAGATTGTTTAAATATAACAAGGATAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLRLTRKYGPHF*GTRLFKYNKDK Trigger: CTTATCCTTGTTATATTTAAACAATCTAGTACCCAAAAAATGTGGGCCGTACTTTCTAGTGAGTCTAAGGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | AGCCATGTGACCCAGGGGGTCAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCTTACAGTCCCTTCCATaGTCAAAGAGACTCCCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: SHVTQGVRDRPRPLPFLSLQSLP*SKRLPG Trigger: ACCAGGGAGTCTCTTTGACAATGGAAGGGACTGTAA...GCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | GTGAGGCTAAAGCCATGTGACCCAGGGGGTCAGGGACAGGCCAAGGCCATTGCCAGGAGGACCACCACATaGACCTCAAACTCCACTTTG | + |
|
Preference number: 5 (lower is better) Translates to: VRLKPCDPGGQGQAKAIARRTTT*TSNSTL Trigger: CAAAGTGGAGTTTGAGGTCAATGTGGTGGTCCTCCT...GGCAATGGCCTTGGCCTGTCCCTGACCCCCTGGGTCACATGGCTTTAGCCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | CAGGGACAGGCCAAGGCCATTGCCCTTCCTCAGCACGGTGTCCTGTCACTCAGAAACTCCACTTTGAAGTaGGTGGTCTCCAGTGTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: QGQAKAIALPQHGVLSLRNSTLK*VVSSVG Trigger: TCCAACACTGGAGACCACCAACTTCAAAGTGGAGTT...TCTGAGTGACAGGACACCGTGCTGAGGAAGGGCAATGGCCTTGGCCTGTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | TGGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTGGGGGCTTTCGCTCTTTTAATCTaGATGTCCAGAGTGGTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: WLLTLCCQESGQDRGVGAFALLI*MSRVVP Trigger: GGGGACCACTCTGGACATCAAGATTAAAAGAGCGAA...AGCCCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | TCTCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTATGCTGGACTGAGTCCTaGCTAGAGATGACCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: SPVRGCVIAQLVEFRCPLCWTES*LEMTTT Trigger: TGTGGTGGTCATCTCTAGCAAGGACTCAGTCCAGCA...TAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CAA 90 bp | CCATGTGAGCAGATGACTGGGTCAATGTCCACATGGCCATTCTGGCTCTCCCCTATGAATTCACAGGTCTaGGTCAGGTCCTTGGCCAAC | + |
|
Preference number: 5 (lower is better) Translates to: PCEQMTGSMSTWPFWLSPMNSQV*VRSLAN Trigger: GTTGGCCAAGGACCTGACCAAGACCTGTGAATTCAT...AGGGGAGAGCCAGAATGGCCATGTGGACATTGACCCAGTCATCTGCTCACATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | AAGCTCTATGCTCCGGATAGCAGCATCCGAGTGTTCCACCACCAGCTCTCCTGTTTCGCTCTTTTAATCTaGATGTCCAGAGTGGTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: KLYAPDSSIRVFHHQLSCFALLI*MSRVVP Trigger: GGGGACCACTCTGGACATCAAGATTAAAAGAGCGAA...ACAGGAGAGCTGGTGGTGGAACACTCGGATGCTGCTATCCGGAGCATAGAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CAA 90 bp | ACAGGCACATCTGGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAAGGGGACCTCAGTCTaGCCACTGGGAATCTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: TGTSGAIGNAFCDLATHRKGTSV*PLGIFP Trigger: AGGAAAGATTCCCAGTGGCAAGACTGAGGTCCCCTT...CCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCCAGATGTGCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | TCCTGTCAGGGGCTGCGTGATAGCGCAGTTAGTGGAGTTCAGATGTCCTCTAATAAGGGGACCTCAGTCTaGCCACTGGGAATCTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: SCQGLRDSAVSGVQMSSNKGTSV*PLGIFP Trigger: AGGAAAGATTCCCAGTGGCAAGACTGAGGTCCCCTT...ATTAGAGGACATCTGAACTCCACTAACTGCGCTATCACGCAGCCCCTGACAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125229.9 |
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| CDS-3UTR CAA 90 bp | TGGTTGCTGACTCTTTGCTGTCAGGAGTCTGGGCAAGATAGAGGGGTGGGGGCTCCTCTAATGAAGAATTaGGGAAGTGAAGCTCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: WLLTLCCQESGQDRGVGAPLMKN*GSEALS Trigger: AGAGAGAGCTTCACTTCCCAAATTCTTCATTAGAGG...AGCCCCCACCCCTCTATCTTGCCCAGACTCCTGACAGCAAAGAGTCAGCAACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | GACACACTGCTTAATGAACCTAAGAAGAAACAGGCACATCTGGAGCCATTGGGATGCTGGACTGAGTCCTaGCTAGAGATGACCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: DTLLNEPKKKQAHLEPLGCWTES*LEMTTT Trigger: TGTGGTGGTCATCTCTAGCAAGGACTCAGTCCAGCA...TCCCAATGGCTCCAGATGTGCCTGTTTCTTCTTAGGTTCATTAAGCAGTGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS-3UTR CAA 90 bp | GGAGCCATTGGGAACGCTTTCTGTGATCTTGCAACACACAGGAGAAATCCTGTTACCTCAAACTCCACTTaGAAGTTGGTGGTCTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: GAIGNAFCDLATHRRNPVTSNST*KLVVSS Trigger: ACTGGAGACCACCAACTTCAAAGTGGAGTTTGAGGT...AACAGGATTTCTCCTGTGTGTTGCAAGATCACAGAAAGCGTTCCCAATGGCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS TCA 72 bp | CCTTCTGCACACCCACAGGTCTCCACCCGGACCAACTaGAGCTCTATGCTCCGGATAGCAGCATCCGAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: PSAHPQVSTRTN*SSMLRIAASEC Trigger: ACACTCGGATGCTGCTATCCGGAGCATAGAGCTTCAGTTGGTCCGGGTGGAGACCTGTGGGTGTGCAGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023615.7 |
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| CDS GCA 72 bp | CAAACACGCCGTGGTAAGTCTCATACAGGACCTTGCTaGCTTTCACAAGCAGTGGGAACTCAAAGGGGACCT | + |
|
Preference number: 6 (lower is better) Translates to: QTRRGKSHTGPC*LSQAVGTQRGP Trigger: AGGTCCCCTTTGAGTTCCCACTGCTTGTGAAAGGCAGCAAGGTCCTGTATGAGACTTACCACGGCGTGTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023615.7 ENSMUST00000125229.9 |
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