Pregenerated sensors for VPS25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078656Ensembl transcript IDs: ENSMUST00000007533.15, ENSMUST00000042477.13, ENSMUST00000100414.12, ENSMUST00000107280.11
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCTCTTGCTGTAGGGCCTaGAGAGCGCGCAGCAGGGTC | + |
|
Preference number: 2 (lower is better) Translates to: GRARNASFLRGTVGLLYPSCCRA*RARSRV Trigger: GACCCTGCTGCGCGCTCTGCAGGCCCTACAGCAAGA...GGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| 3UTR-3UTR TCA 90 bp | GGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATTTGAGTCTGGAGGAGTaGCAGATCCAGTCTGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: GGRARNASFLRGTVGLLYLSLEE*QIQSVG Trigger: CCCCACAGACTGGATCTGTCACTCCTCCAGACTCAA...ATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| 3UTR-3UTR TCA 90 bp | CAGTATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCATTGAGTCTGGAGGAGTaGCAGATCCAGTCTGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: QYRMGKEVGQETHPFSVALSLEE*QIQSVG Trigger: CCCCACAGACTGGATCTGTCACTCCTCCAGACTCAA...TGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| 3UTR-3UTR TCA 90 bp | AAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAAATTGAGTCTGGAGGAGTaGCAGATCCAGTCTGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: KRILSPWHCGLTLSQGQKLSLEE*QIQSVG Trigger: CCCCACAGACTGGATCTGTCACTCCTCCAGACTCAA...TTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| 3UTR-3UTR GCA 90 bp | GCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAATAATCTCAGCCTTGTaGTCTTGCTGTAGGGCCTGC | + |
|
Preference number: 2 (lower is better) Translates to: ASFLRGTVGLLYPRDRNKIISAL*SCCRAC Trigger: GCAGGCCCTACAGCAAGAGCACAAGGCTGAGATTAT...TTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| 3UTR-3UTR CCA 90 bp | CTTGTGCAGGCGCATGTAGGTGGGTGTGTACTTATGTGTGAGAACACATGTAAATTCTCCGTGGCACTGTaGGCTTACTCTATCCCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: LVQAHVGGCVLMCENTCKFSVAL*AYSIPG Trigger: CCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAA...TTTACATGTGTTCTCACACATAAGTACACACCCACCTACATGCGCCTGCACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 |
||
| 3UTR-3UTR GCA 90 bp | TGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCCTCTAGACAGGAAGAGATaGTCAGTCAGGGATACTCAG | + |
|
Preference number: 2 (lower is better) Translates to: WAYSIPGTEIKGYVGNIPLDRKR*SVRDTQ Trigger: CTGAGTATCCCTGACTGAGCATCTCTTCCTGTCTAG...AGGGATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| 3UTR CCA 72 bp | TGCAGAGCGCGCAGCAGGGTCGCCTCGTCCAGCCCATaGAACTCTAGACAGGAAGAGATGCTCAGTCAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: CRARSRVASSSP*NSRQEEMLSQG Trigger: TCCCTGACTGAGCATCTCTTCCTGTCTAGAGTTCCATGGGCTGGACGAGGCGACCCTGCTGCGCGCTCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR GCA 90 bp | GGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: GRARNASFLRGTVGLLYPGGKRY*HGHSKL Trigger: GAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCC...GGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | AGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: RNASFLRGTVGLLYPRDRGGKRY*HGHSKL Trigger: GAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCC...TCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | AGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGATCTTGCTGTAGGGCCTaGAGAGCGCGCAGCAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RNASFLRGTVGLLYPRDRSCCRA*RARSRV Trigger: GACCCTGCTGCGCGCTCTGCAGGCCCTACAGCAAGA...TCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | TATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTCTTGCTGTAGGGCCTaGAGAGCGCGCAGCAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: YRMGKEVGQETHPFSVALSCCRA*RARSRV Trigger: GACCCTGCTGCGCGCTCTGCAGGCCCTACAGCAAGA...CAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR CCA 90 bp | AAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGCCATCACCGTCATGCTaGACTGTTTGTGCAGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: KKRILSPWHCGLTLSQGQPSPSC*TVCAGG Trigger: GCCGCCTGCACAAACAGTCCAGCATGACGGTGATGG...CTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CCA 90 bp | GGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGAGCCTCGTCCAGCCCATaGAACTCTTCATCCTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: GKKRILSPWHCGLTLSQGASSSP*NSSSSV Trigger: CACAGAGGATGAAGAGTTCCATGGGCTGGACGAGGC...TCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | GGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCATGCTGGACTGTTTGTaGAGGCGGCAGAAGGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: GRARNASFLRGTVGLLYPMLDCL*RRQKDR Trigger: TCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCAT...GGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | GGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCCTTCCATCACCGTCATaGTGGACTGTTTGTGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GRARNASFLRGTVGLLYPLPSPS*WTVCAG Trigger: GCCTGCACAAACAGTCCAGCATGACGGTGATGGAAG...GGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | TATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGGCACTGCTGCAGCTGTaGCTCACAATTCCTGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: YRMGKEVGQETHPFSVALALLQL*LTIPGH Trigger: ATGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGC...CAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR CCA 90 bp | TATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGGCCTCGTCCAGCCCATaGAACTCTTCATCCTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YRMGKEVGQETHPFSVALASSSP*NSSSSV Trigger: CACAGAGGATGAAGAGTTCCATGGGCTGGACGAGGC...CAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | AGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGGGGGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: RPYKSLPGINPKFLNGLGGGKRY*HGHSKL Trigger: GAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCC...CCCCAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR GCA 90 bp | CAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGCACCAGGCGGCCAGCTaGTTCTGCCGGGTGTCCACG | + |
|
Preference number: 4 (lower is better) Translates to: QRPYKSLPGINPKFLNGLHQAAS*FCRVST Trigger: CGTGGACACCCGGCAGAAGCAGCTGGCCGCCTGGTG...CAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR GCA 90 bp | CAGTATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCAATGCTGGACTGTTTGTaGAGGCGGCAGAAGGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: QYRMGKEVGQETHPFSVAMLDCL*RRQKDR Trigger: TCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCAT...TGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | AGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAATAATCTCAGCCTTGTaGTCTTGCTGTAGGGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RNASFLRGTVGLLYPRDRIISAL*SCCRAC Trigger: GCAGGCCCTACAGCAAGAGCACAAGGCTGAGATTAT...TCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | GGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATATAATCTCAGCCTTGTaGTCTTGCTGTAGGGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GGRARNASFLRGTVGLLYIISAL*SCCRAC Trigger: GCAGGCCCTACAGCAAGAGCACAAGGCTGAGATTAT...ATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | TACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCCTAAGTCTGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: YSIPGTEIKGYVGNIPKSGGKRY*HGHSKL Trigger: GAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCC...AGACTTAGGGATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CCA 90 bp | CTTGTGCAGGCGCATGTAGGTGGGTGTGTACTTATGTGTGAGAACACATGTAAACCATCACCGTCATGCTaGACTGTTTGTGCAGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: LVQAHVGGCVLMCENTCKPSPSC*TVCAGG Trigger: GCCGCCTGCACAAACAGTCCAGCATGACGGTGATGG...TTTACATGTGTTCTCACACATAAGTACACACCCACCTACATGCGCCTGCACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 |
||
| CDS-3UTR GCA 90 bp | GTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCCCTTCCATCACCGTCATaGTGGACTGTTTGTGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VGLLYPRDRNKGLCGKHPLPSPS*WTVCAG Trigger: GCCTGCACAAACAGTCCAGCATGACGGTGATGGAAG...GGGATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CCA 90 bp | ACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCATCACCGTCATGCTaGACTGTTTGTGCAGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: TVGLLYPRDRNKGLCGKHPSPSC*TVCAGG Trigger: GCCGCCTGCACAAACAGTCCAGCATGACGGTGATGG...ATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | GTTATGTGGGAAACATCCCTAAGTCTGAGCTTTCAGGACTTGAGCCCTTTGAGTATGCTGGACTGTTTGTaGAGGCGGCAGAAGGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: VMWETSLSLSFQDLSPLSMLDCL*RRQKDR Trigger: TCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCAT...ACTCAAAGGGCTCAAGTCCTGAAAGCTCAGACTTAGGGATGTTTCCCACATAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | TATGTGGGAAACATCCCTAAGTCTGAGCTTTCAGGACTTGAGCCCTTTGAGTCTCTTCCATCACCGTCATaGTGGACTGTTTGTGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: YVGNIPKSELSGLEPFESLPSPS*WTVCAG Trigger: GCCTGCACAAACAGTCCAGCATGACGGTGATGGAAG...AGACTCAAAGGGCTCAAGTCCTGAAAGCTCAGACTTAGGGATGTTTCCCACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CCA 90 bp | AGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGGGGAAAAGCGGGCTCTCCTaGGCTTCCATCACCGTCATG | + |
|
Preference number: 4 (lower is better) Translates to: RPYKSLPGINPKFLNGLGKSGLS*ASITVM Trigger: CATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTT...CCCCAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR CCA 90 bp | TATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGCACAGGAAGTTTCCCTaGCTTAAGGTTAAGGGAATG | + |
|
Preference number: 4 (lower is better) Translates to: YRMGKEVGQETHPFSVALHRKFP*LKVKGM Trigger: CATTCCCTTAACCTTAAGCCAGGGAAACTTCCTGTG...CAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107280.11 |
||
| CDS-3UTR TCA 90 bp | GGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGATCTTCTAATACAATCTaGATTGACTCCACAGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: GKKRILSPWHCGLTLSQGSSNTI*IDSTGS Trigger: ACTTCCTGTGGAGTCAATTCAGATTGTATTAGAAGA...TCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR TCA 90 bp | AGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGATCTTCTAATACAATCTaGATTGACTCCACAGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: RNASFLRGTVGLLYPRDRSSNTI*IDSTGS Trigger: ACTTCCTGTGGAGTCAATTCAGATTGTATTAGAAGA...TCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR GCA 90 bp | GTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAGATAATCTATTTGTATaGTGTGTGCACTGCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VALWAYSIPGTEIKGYVGDNLFV*CVHCCS Trigger: GCTGCAGCAGTGCACACAGCATACAAATAGATTATC...TCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR CCA 90 bp | AATCAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGCCATCACCGTCATGCTaGACTGTTTGTGCAGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: NQRPYKSLPGINPKFLNGPSPSC*TVCAGG Trigger: GCCGCCTGCACAAACAGTCCAGCATGACGGTGATGG...CCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR CCA 90 bp | ACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATGTGCCTCACAATTCCTaGGCATTCCTTCATCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TVGLLYPRDRNKGLCGKHVPHNS*AFLHPL Trigger: CAGAGGATGAAGGAATGCCCAGGAATTGTGAGGCAC...ATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR GCA 90 bp | AATCAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGATGCTGGACTGTTTGTaGAGGCGGCAGAAGGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: NQRPYKSLPGINPKFLNGMLDCL*RRQKDR Trigger: TCTGTCCTTCTGCCGCCTGCACAAACAGTCCAGCAT...CCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR GCA 90 bp | AATCAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGCTTCCATCACCGTCATaGTGGACTGTTTGTGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: NQRPYKSLPGINPKFLNGLPSPS*WTVCAG Trigger: GCCTGCACAAACAGTCCAGCATGACGGTGATGGAAG...CCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR TCA 90 bp | CAGGCGCATGTAGGTGGGTGTGTACTTATGTGTGAGAACACATGTAAAGTGTCATCTTCTAATACAATCTaGATTGACTCCACAGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: QAHVGGCVLMCENTCKVSSSNTI*IDSTGS Trigger: ACTTCCTGTGGAGTCAATTCAGATTGTATTAGAAGA...TGACACTTTACATGTGTTCTCACACATAAGTACACACCCACCTACATGCGCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 |
||
| CDS-3UTR TCA 90 bp | CAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGTCTTCTAATACAATCTaGATTGACTCCACAGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: QRPYKSLPGINPKFLNGLSSNTI*IDSTGS Trigger: ACTTCCTGTGGAGTCAATTCAGATTGTATTAGAAGA...CAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS CCA 90 bp | AGGGAATGGCGCTGTAGCTTGACGTTGTTGAAAAGCGGGCTCTCCTaGGCTTCCATCACCGTCATGCTGGACTGTTTGTGCAGGCGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: REWRCSLTLLKSGLS*ASITVMLDCLCRRQ Trigger: CTGCCGCCTGCACAAACAGTCCAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGCCATTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | GGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATGTCATGCTGGACTGTTaGTGCAGGCGGCAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: GGRARNASFLRGTVGLLYVMLDC*CRRQKD Trigger: GTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGAC...ATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | AGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGCGCTGTAGCTTGACGTaGTTGAAAAGCGGGCTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RMGKEVGQETHPFSVALWRCSLT*LKSGLS Trigger: GGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCG...CCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | AAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAAAGTCATGCTGGACTGTTaGTGCAGGCGGCAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: KRILSPWHCGLTLSQGQKVMLDC*CRRQKD Trigger: GTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGAC...TTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | AGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGACAGACGCTGTAGCTTGACGTaGTTGAAAAGCGGGCTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RNASFLRGTVGLLYPRDRRCSLT*LKSGLS Trigger: GGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCG...TCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | GCTCGGGGACAGTATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCAGTTTCCGCTGTAGCTaGACGTTGTTGAAAAGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: ARGQYRMGKEVGQETHPFSFRCS*TLLKSG Trigger: CCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACT...GAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATACTGTCCCCGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 |
||
| CDS-3UTR CAA 90 bp | GGCAAGAAACGCATCCTTTCTCCGTGGCACTGTGGGCTTACTCTATCCCAGGGAGCCAGGATAATCTATTaGTATGCTGTGTGCACTGCT | + |
|
Preference number: 5 (lower is better) Translates to: GKKRILSPWHCGLTLSQGARIIY*YAVCTA Trigger: AGCAGTGCACACAGCATACAAATAGATTATCCTGGC...TCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR CAA 90 bp | GTGGCACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAGAATGGCGCTGTAGCTaGACGTTGTTGAAAAGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: VALWAYSIPGTEIKGYVGEWRCS*TLLKSG Trigger: CCCGCTTTTCAACAACGTCAAGCTACAGCGCCATTC...TCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | AGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGGGGGTCATGCTGGACTGTTaGTGCAGGCGGCAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: RPYKSLPGINPKFLNGLGVMLDC*CRRQKD Trigger: GTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGAC...CCCCAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR CAA 90 bp | ACTGTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATGTCATGCTGGACTGTTaGTGCAGGCGGCAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: TVGLLYPRDRNKGLCGKHVMLDC*CRRQKD Trigger: GTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGAC...ATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 ENSMUST00000107280.11 |
||
| CDS-3UTR CAA 90 bp | GTGGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCCGTGATAATCTCAGCCTaGTGCTCTTGCTGTAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VGLLYPRDRNKGLCGKHPVIISA*CSCCRA Trigger: GGCCCTACAGCAAGAGCACAAGGCTGAGATTATCAC...GGGATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS GCA 90 bp | GACTTCCAAAGCCAGGATAATCTATTTGTATGCTGTGTGCACTGCTaGAGCTGTGCCTCACAATTCCTGGGCATTCCTTCATCCTCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: DFQSQDNLFVCCVHC*SCASQFLGIPSSSV Trigger: CACAGAGGATGAAGGAATGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCTTTGGAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR CAA 90 bp | AGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTGGGGCGCTGTAGCTTGACGTaGTTGAAAAGCGGGCTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RPYKSLPGINPKFLNGLGRCSLT*LKSGLS Trigger: GGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCG...CCCCAACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR CAA 90 bp | GTTATGTGGGAAACATCCCTAAGTCTGAGCTTTCAGGACTTGAGCCCTTTGAGTGTGATAATCTCAGCCTaGTGCTCTTGCTGTAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VMWETSLSLSFQDLSPLSVIISA*CSCCRA Trigger: GGCCCTACAGCAAGAGCACAAGGCTGAGATTATCAC...ACTCAAAGGGCTCAAGTCCTGAAAGCTCAGACTTAGGGATGTTTCCCACATAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000107280.11 |
||
| CDS GCA 90 bp | GAAGCTGAGACTTCCAAAGCCAGGATAATCTATTTGTATGCTGTGTaGACTGCTGCAGCTGTGCCTCACAATTCCTGGGCATTCCTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: EAETSKARIIYLYAV*TAAAVPHNSWAFLH Trigger: ATGAAGGAATGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCTTTGGAAGTCTCAGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS-3UTR CAA 90 bp | TACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGAAACATCCCTAAGTCTAGTTTCCGCTGTAGCTaGACGTTGTTGAAAAGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: YSIPGTEIKGYVGNIPKSSFRCS*TLLKSG Trigger: CCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACT...AGACTTAGGGATGTTTCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042477.13 ENSMUST00000100414.12 |
||
| CDS-3UTR CAA 90 bp | TCAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTTGTAGCTTGACGTTGTaGAAAAGCGGGCTCTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SKAIQILAWHKPKVFKWVCSLTL*KSGLSW Trigger: CCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACA...AACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS-3UTR CAA 90 bp | TCAAAGGCCATACAAATCCTTGCCTGGCATAAACCCAAAGTTTTTAAATGGGTTAGTTTCCGCTGTAGCTaGACGTTGTTGAAAAGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: SKAIQILAWHKPKVFKWVSFRCS*TLLKSG Trigger: CCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACT...AACCCATTTAAAAACTTTGGGTTTATGCCAGGCAAGGATTTGTATGGCCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007533.15 |
||
| CDS CCA 72 bp | GCTGTGTGCACTGCTGCAGCTGTGCCTCACAATTCCTaGGCATTCCTTCATCCTCTGTGTCTTCCCCACTCG | + |
|
Preference number: 6 (lower is better) Translates to: AVCTAAAVPHNS*AFLHPLCLPHS Trigger: CGAGTGGGGAAGACACAGAGGATGAAGGAATGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS CAA 90 bp | TTCCCTGGCTTAAGGTTAAGGGAATGGCGCTGTAGCTTGACGTTGTaGAAAAGCGGGCTCTCCTGGGCTTCCATCACCGTCATGCTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: FPGLRLREWRCSLTL*KSGLSWASITVMLD Trigger: GTCCAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGCCATTCCCTTAACCTTAAGCCAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107280.11 |
||
| CDS CAA 72 bp | TTAAGGTTAAGGGAATGGCGCTGTAGCTTGACGTTGTaGAAAAGCGGGCTCTCCTGGGCTTCCATCACCGTC | + |
|
Preference number: 6 (lower is better) Translates to: LRLREWRCSLTL*KSGLSWASITV Trigger: GACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGCCATTCCCTTAACCTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107280.11 |
||
| CDS CAA 90 bp | GTGGCTGAGCCAGAAGCTGAGACTTCCAAAGCCAGGATAATCTATTaGTATGCTGTGTGCACTGCTGCAGCTGTGCCTCACAATTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: VAEPEAETSKARIIY*YAVCTAAAVPHNSW Trigger: CCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCTTTGGAAGTCTCAGCTTCTGGCTCAGCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS CAA 72 bp | CCAGAAGCTGAGACTTCCAAAGCCAGGATAATCTATTaGTATGCTGTGTGCACTGCTGCAGCTGTGCCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: PEAETSKARIIY*YAVCTAAAVPH Trigger: GTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCTTTGGAAGTCTCAGCTTCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS GCA 72 bp | AGCCAGGATAATCTATTTGTATGCTGTGTGCACTGCTaGAGCTGTGCCTCACAATTCCTGGGCATTCCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: SQDNLFVCCVHC*SCASQFLGIPS Trigger: TGAAGGAATGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||
| CDS GCA 72 bp | ACTTCCAAAGCCAGGATAATCTATTTGTATGCTGTGTaGACTGCTGCAGCTGTGCCTCACAATTCCTGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: TSKARIIYLYAV*TAAAVPHNSWA Trigger: TGCCCAGGAATTGTGAGGCACAGCTGCAGCAGTGCACACAGCATACAAATAGATTATCCTGGCTTTGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100414.12 |
||