RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VPS18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034216

Ensembl transcript IDs: ENSMUST00000037280.5

Found 218 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACCTAGTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTaGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGT +
Preference number: 1 (lower is better)
Translates to: HLVEAEEGELEVQRL*KDGGRKDSGPLSPG
Trigger: ACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAACTAGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR GCA 90 bp GCATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTaGTTGCTCCTGGGTCACCTAGTTGAGGCAGAAGAGGGCGAGCTG +
Preference number: 1 (lower is better)
Translates to: ASPHAHSPHKCLGSA*LLLGHLVEAEEGEL
Trigger: CAGCTCGCCCTCTTCTGCCTCAACTAGGTGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR GCA 90 bp AGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATaGCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCT +
Preference number: 1 (lower is better)
Translates to: RAPDTGAPGHISIST*PLSPQVPRVCLLAP
Trigger: AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR TCA 90 bp TTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTaGAGGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACT +
Preference number: 1 (lower is better)
Translates to: FIVREGNKQNLPHPQ*RTYAKAQRLAGLWT
Trigger: AGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR CCA 90 bp CCACACTTGGTGCAGGCAGCCTTCTTGTGGCATTCCATCCTTTCTTaGGATCATATCCTGTTAGCTTCAGCATCAACACAAAGCCATCAA +
Preference number: 1 (lower is better)
Translates to: PHLVQAAFLWHSILS*DHILLASASTQSHQ
Trigger: TTGATGGCTTTGTGTTGATGCTGAAGCTAACAGGATATGATCCCAAGAAAGGATGGAATGCCACAAGAAGGCTGCCTGCACCAAGTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR-3UTR CCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACCAGAAGAGGGCGAGCTaGAGGTCCAGAGGCTGTGGA +
Preference number: 2 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDQKRAS*RSRGCG
Trigger: TCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTG...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR-3UTR GCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGCTATTCCACACTTGGTaGAGGCAGCCTTCTTGTGGC +
Preference number: 2 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVLFHTW*RQPSCG
Trigger: GCCACAAGAAGGCTGCCTGCACCAAGTGTGGAATAG...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR-3UTR CCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGCAGGCAGCCTTCTTGTaGCATTCCATCCTTTCTTGG +
Preference number: 2 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVQAAFL*HSILSW
Trigger: CCAAGAAAGGATGGAATGCCACAAGAAGGCTGCCTG...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR CCA 72 bp GAACACCAACCAGGGCCTGGCTTTCGCAGGAGGGTCTaGCAGCTGGATCCATGTCTGTCCACCCACGCGGGG +
Preference number: 3 (lower is better)
Translates to: EHQPGPGFRRRV*QLDPCLSTHAG
Trigger: CCCCGCGTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCCTGGTTGGTGTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR CCA 72 bp GAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTaGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTC +
Preference number: 3 (lower is better)
Translates to: EAEEGELEVQRL*KDGGRKDSGPL
Trigger: GAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR TCA 72 bp CCTAGGGTCTGCCTGCTTGCTCCTGGGTCACCTAGTTaGGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCT +
Preference number: 3 (lower is better)
Translates to: PRVCLLAPGSPS*GRRGRAGGPEA
Trigger: AGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAACTAGGTGACCCAGGAGCAAGCAGGCAGACCCTAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR-3UTR CAA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACCTAGGGTCTGCCTGCTaGCTCCTGGGTCACCTAGTT +
Preference number: 3 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHLGSAC*LLGHLV
Trigger: AACTAGGTGACCCAGGAGCAAGCAGGCAGACCCTAG...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR GCA 72 bp GACACTGGAGCCCCAGGTCACATTAGCATCTCCACATaGCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTG +
Preference number: 3 (lower is better)
Translates to: DTGAPGHISIST*PLSPQVPRVCL
Trigger: CAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR GCA 72 bp ACATTAGCATCTCCACATGCCCACTCTCCCCACAAGTaGCTAGGGTCTGCCTGCTTGCTCCTGGGTCACCTA +
Preference number: 3 (lower is better)
Translates to: TLASPHAHSPHK*LGSACLLLGHL
Trigger: TAGGTGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGCTAATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR TCA 72 bp AGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTaGAGGACCTACGCCAAGGCTCAAAGGCTTGCAGGA +
Preference number: 3 (lower is better)
Translates to: REGNKQNLPHPQ*RTYAKAQRLAG
Trigger: TCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR CCA 72 bp TGTTCTATTCCACACTTGGTGCAGGCAGCCTTCTTGTaGCATTCCATCCTTTCTTGGGATCATATCCTGTTA +
Preference number: 3 (lower is better)
Translates to: CSIPHLVQAAFL*HSILSWDHILL
Trigger: TAACAGGATATGATCCCAAGAAAGGATGGAATGCCACAAGAAGGCTGCCTGCACCAAGTGTGGAATAGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR-3UTR CAA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGGCATTCCATCCTTTCTaGGGATCATATCCTGTTAGC +
Preference number: 3 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVAFHPF*GSYPVS
Trigger: GCTAACAGGATATGATCCCAAGAAAGGATGGAATGC...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGCCGGCCAGTTTCCGCTaGAGAAACTCGGCCAGCGCC +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTAPASFR*RNSASA
Trigger: GGCGCTGGCCGAGTTTCTTCAGCGGAAACTGGCCGG...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAATGGCCTGGCTCACCTaGTGGGCCTCACCGCCCTGG +
Preference number: 4 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGMAWLT*WASPPW
Trigger: CCAGGGCGGTGAGGCCCAGCAGGTGAGCCAGGCCAT...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGCTGGCGAGCAGCTCGTaGATAGAGGCCCGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTALASSS*IEARLA
Trigger: TGCCAGCCGGGCCTCTATCCACGAGCTGCTCGCCAG...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp GCCTCAGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCAGGTATGCCAGAAGTaGGGCTGGCTGGCCACGGGC +
Preference number: 4 (lower is better)
Translates to: ASGHPTLEPQVTLASPHAQVCQK*GWLATG
Trigger: GCCCGTGGCCAGCCAGCCTCACTTCTGGCATACCTG...GGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCTGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACCCTGGGGCTCCACGGTaGCATAGCGGCCTCGGAGCT +
Preference number: 4 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHPGAPR*HSGLGA
Trigger: AGCTCCGAGGCCGCTATGGCACCGTGGAGCCCCAGG...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCAACTGGGCCCCACCGCTaGAGCCCCAGCTTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSTGPHR*SPSFCL
Trigger: GAGGCAGAAGCTGGGGCTGCAGCGGTGGGGCCCAGT...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CGGCGTTCGCACCTGAAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACACAGGCGTCTACGAGCTaGCGGGGGATGTGGCGGATG +
Preference number: 4 (lower is better)
Translates to: RRSHLKTSRLKLGCNPLTQASTS*RGMWRM
Trigger: CATCCGCCACATCCCCCGCCAGCTCGTAGACGCCTG...TGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTTCAGGTGCGAACGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp GGGCCTGGCTTTCGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACGCACATCCTCGATCTTaGGCAAGGGGCAGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: GPGFRRRVWQLDPCLSTHAHPRS*ARGSWP
Trigger: TGGCCAGCTGCCCCTTGCTCAAGATCGAGGATGTGC...GTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGACTAGGGCAACCAGTCTaGAAGACGGCCGAGCGGGAC +
Preference number: 4 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGLGQPV*KTAERD
Trigger: GTCCCGCTCGGCCGTCTTGCAGACTGGTTGCCCTAG...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCACCAGGATGGGGCCGGTaGTGCTCTCGTTGCCCATGG +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAPGWGR*CSRCPW
Trigger: CCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGG...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGACCTGCCCTGTTAGCGTaGACACAGCCTCCACCCGGT +
Preference number: 4 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGPALLA*TQPPPG
Trigger: ACCGGGTGGAGGCTGTGTGCACGCTAACAGGGCAGG...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCAAGGGCAGGGATGAGCTaGCGAGCATCCAGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSRAGMS*RASSRL
Trigger: CAGCCGGCTGGATGCTCGGCAGCTCATCCCTGCCCT...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp GCCTCAGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCACGCAGGCGCGGTGGTaGCCGTGCTCAGCACAAAGT +
Preference number: 4 (lower is better)
Translates to: ASGHPTLEPQVTLASPHATQARW*PCSAQS
Trigger: ACTTTGTGCTGAGCACGGCCACCACCGCGCCTGCGT...GGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCTGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTTCACCAGGGCAGGGATaGGCTGCCGAGCATCCAGCC +
Preference number: 4 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHASPGQG*AAEHPA
Trigger: GGCTGGATGCTCGGCAGCTCATCCCTGCCCTGGTGA...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTCATCCAGGTCAGCCTTaGGCTGCTCCCGACTGGGCC +
Preference number: 4 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPHPGQP*AAPDWA
Trigger: GGCCCAGTCGGGAGCAGCTCAAGGCTGACCTGGATG...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAGTCAGCAGTGTGGCCTaGGTACGCTCCGTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAVSSVA*VRSVGF
Trigger: GAAGCCGACGGAGCGTACCCAGGCCACACTGCTGAC...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp TTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGCACAGCTGGGGGTCCCGGTaGCGGGCAAGCACAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LILSLFPLVPGVPSASGHSWGSR*RASTAR
Trigger: CCTGGCTGTGCTTGCCCGCCACCGGGACCCCCAGCT...GTGCCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAAGCTGGCGGGGGATGTaGCGGATGAGAATGGGGGAG +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPASWRGM*RMRMGE
Trigger: CTCCCCCATTCTCATCCGCCACATCCCCCGCCAGCT...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGATTCCATGTAGCGGATaGCCTGGCTCACCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTAIPCSG*PGSPAG
Trigger: CCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAAT...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACGCGGGGGAACTTCAGGCCATGGCTGTCTaGACGTCTTCTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: RRRVWQLDPCLSTHAGELQAMAV*TSSSSC
Trigger: GCAGGAGGAAGAAGACGTCCAGACAGCCATGGCCTG...AAGTTCCCCCGCGTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GGGCCTGGCTTTCGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACCCTTGCCCAGGCTCATaGAGAGCTGATTGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: GPGFRRRVWQLDPCLSTHPCPGS*RADCRR
Trigger: TCTCCTGCAATCAGCTCTGCATGAGCCTGGGCAAGG...GTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GGGCCTGGCTTTCGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACACGGTTGGGCTCACTTaGCTTGCCCAAGTCAATGCG +
Preference number: 4 (lower is better)
Translates to: GPGFRRRVWQLDPCLSTHTVGLT*LAQVNA
Trigger: CGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGT...GTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GCCTCAGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCGGCAGCAAAGAGTCCTaGGAAGCCCTGGGCTTCAGT +
Preference number: 4 (lower is better)
Translates to: ASGHPTLEPQVTLASPHAGSKES*EALGFS
Trigger: ACTGAAGCCCAGGGCTTCGCAGGACTCTTTGCTGCC...GGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCTGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAGCGCGGTGGTGGCCGTaGTCAGCACAAAGTCGAAGT +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAARWWP*SAQSRS
Trigger: ACTTCGACTTTGTGCTGAGCACGGCCACCACCGCGC...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CGGCGTTCGCACCTGAAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAGGCAAGTCTGCACACTaGTTGGCCAGGTCCACATCC +
Preference number: 4 (lower is better)
Translates to: RRSHLKTSRLKLGCNPLTGKSAH*LARSTS
Trigger: GGATGTGGACCTGGCCAAGCAGTGTGCAGACTTGCC...TGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTTCAGGTGCGAACGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACCTCCTCCGGCAAGTCTaGACACTGCTTGGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHLLRQV*TLLGQV
Trigger: GACCTGGCCAAGCAGTGTGCAGACTTGCCGGAGGAG...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCAACGTCTTCTTCCTCCTaGACCACGTGCCGGGCGATC +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSTSSSS*TTCRAI
Trigger: GATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGT...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGCAAGTCTCGTCGGATaGGCTGGGCACTGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPASLVG*AGHWLW
Trigger: CCACAGCCAGTGCCCAGCGCATCCGACGAGACTTGC...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGTGCTCTCGTTGCCCATaGCCTTGTTCCATCCCACAC +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTACSRCP*PCSIPH
Trigger: GTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCA...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACAAGTGGTCAGCAGTGTaGCCTGGGTACGCTCCGTCG +
Preference number: 4 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHKWSAV*PGYAPS
Trigger: CGACGGAGCGTACCCAGGCCACACTGCTGACCACTT...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGGCCTGGCTCACCTGCTaGGCCTCACCGCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: DLILSLFPLVPGVPSASGAWLTC*ASPPWL
Trigger: CAGCCAGGGCGGTGAGGCCCAGCAGGTGAGCCAGGC...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAAGAAGTGAGGCTGGCTaGCCACGGGCATACAGGGAC +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPARSEAG*PRAYRD
Trigger: GTCCCTGTATGCCCGTGGCCAGCCAGCCTCACTTCT...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGGCAGTTCCTCAAGTCTaGCCTGCTTGTAGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTAAVPQV*PACRQG
Trigger: TCCCTGCCTACAAGCAGGCCAGACTTGAGGAACTGC...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGCCGAGCGGGACAATaGGTCCTCGTACTCATCCAG +
Preference number: 4 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPGRAGQ*VLVLIQ
Trigger: CTGGATGAGTACGAGGACTCATTGTCCCGCTCGGCC...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGTGTAAAGGACCTCGGTaGTACTCAGCGCAACCAGCA +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTACKGPR*YSAQPA
Trigger: TGCTGGTTGCGCTGAGTAGCACCGAGGTCCTTTACA...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGACTTACATACCCAGAATaGGGGATGCCCACGCTAGGG +
Preference number: 4 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGLTYPE*GMPTLG
Trigger: CCCTAGCGTGGGCATCCCCCATTCTGGGTATGTAAG...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCACCAGTTCCACACGGTTaGGCTCACTTGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSPVPHG*AHLPCP
Trigger: TGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGG...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAGGATGCGCTGGGCACTaGCTGTGGCTTCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAGCAGH*LWLLPS
Trigger: AGATGGAAGAAGCCACAGCCAGTGCCCAGCGCATCC...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCACAGCTTCTGCCTCCTTaGCCTTCACGGAGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSQLLPP*PSRSLW
Trigger: CCAAAGGCTCCGTGAAGGCCAAGGAGGCAGAAGCTG...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGACCTTGCCCAAGTCAATaGGGAGCAGTGTATCCTTGC +
Preference number: 4 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGPCPSQ*GAVYPC
Trigger: GCAAGGATACACTGCTCCGCATTGACTTGGGCAAGG...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGGCATCTGGGTCACCCTaGAGAGCACCCAGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: DLILSLFPLVPGVPSASGASGSP*RAPRRL
Trigger: GAGCCGCCTGGGTGCTCTGCAGGGTGACCCAGATGC...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAACATCTTGTGGACTTTaGCGTCGTCCTTGCGCCCCA +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPATSCGL*RRPCAP
Trigger: TGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGT...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGAAGGAAGGACAGCGAGCAGCAGTAGGAAATaGAACTGGGTCAGGACGATG +
Preference number: 4 (lower is better)
Translates to: RASWRSRGCGRTEEGRTASSSRK*NWVRTM
Trigger: CATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCT...CGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CGGCGTTCGCACCTGAAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACACCCATAGGTGGCCTGTaGATGAGTCCTTCACCATGT +
Preference number: 4 (lower is better)
Translates to: RRSHLKTSRLKLGCNPLTPIGGL*MSPSPC
Trigger: ACATGGTGAAGGACTCATCCACAGGCCACCTATGGG...TGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTTCAGGTGCGAACGCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCATCAAAGATCTGTCCTTaGGCTGTGCCGACCAGGATG +
Preference number: 4 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSSKICP*AVPTRM
Trigger: CATCCTGGTCGGCACAGCTCAAGGACAGATCTTTGA...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTGCCACCCTCGCTAGCTaGGAGCTCTGCTTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHAATLAS*ELCFKD
Trigger: ATCTTTGAAGCAGAGCTCTCAGCTAGCGAGGGTGGC...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTTGGGCTCACTTGCCTTaGCCAAGTCAATGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHAWAHLP*PSQCGA
Trigger: TGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCA...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CGGCGTTCGCACCTGAAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAGAGTCCTTCACCATGTaGCTCAGTGGTCCAAACTTC +
Preference number: 4 (lower is better)
Translates to: RRSHLKTSRLKLGCNPLTESFTM*LSGPNF
Trigger: GAAGTTTGGACCACTGAGGCACATGGTGAAGGACTC...TGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTTCAGGTGCGAACGCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CGTGATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAAGGTCAGCCTTGAGCTaGTCCCGACTGGGCCCCACC +
Preference number: 4 (lower is better)
Translates to: RDLILSLFPLVPGVPSASRSALS*SRLGPT
Trigger: GGTGGGGCCCAGTCGGGAGCAGCTCAAGGCTGACCT...TGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAAGGAAACTCACGGAATaGGGGCGGGTGGTCTGTATA +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPARKLTE*GRVVCI
Trigger: TATACAGACCACCCGCCCCCATTCCGTGAGTTTCCT...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp TTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGCACGCTCTGTCAGCCAAGTaGTCAGCAGTGTGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LILSLFPLVPGVPSASGHALSAK*SAVWPG
Trigger: CCCAGGCCACACTGCTGACCACTTGGCTGACAGAGC...GTGCCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTGCAGGTAGTTGTGAATaGCCTGCTCCGTCTCACCGA +
Preference number: 4 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHAAGSCE*PAPSHR
Trigger: TCGGTGAGACGGAGCAGGCCATTCACAACTACCTGC...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAGGGCCTCCAAGAACTTaGGGGCAATCTCCTCAAAAT +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAGPPRT*GQSPQN
Trigger: ATTTTGAGGAGATTGCCCTCAAGTTCTTGGAGGCCC...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCACACCATGTGCCTCAGTaGTCCAAACTTCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: KTSRLKLGCNPLTIADPAHHVPQ*SKLLQE
Trigger: TTCCTGGAGAAGTTTGGACCACTGAGGCACATGGTG...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CGGCGTTCGCACCTGAAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAGTCCTGCATGATCACTaGAAAATACACCATGTGCTC +
Preference number: 4 (lower is better)
Translates to: RRSHLKTSRLKLGCNPLTVLHDH*KIHHVL
Trigger: GAGCACATGGTGTATTTTGCAGTGATCATGCAGGAC...TGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTTCAGGTGCGAACGCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CGTGATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCATCTCGTCGGATGCGCTaGGCACTGGCTGTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: RDLILSLFPLVPGVPSASSRRMR*ALAVAS
Trigger: AGAAGCCACAGCCAGTGCCCAGCGCATCCGACGAGA...TGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTAAGGAAAGTCACAGGTaGAGCATTTGTCCTGGGGCT +
Preference number: 4 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHAKESHR*SICPGA
Trigger: AGCCCCAGGACAAATGCTCCACCTGTGACTTTCCTT...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp GGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTTTATTTGCTCTGTGTCTCCGTaGCTGGCGAGCAGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: GPTPRLKGLQDSGLLLFICSVSP*LASSSW
Trigger: CCACGAGCTGCTCGCCAGTCACGGAGACACAGAGCA...AATAAAAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGGGAGCAGTGTATCCTTaGCCAGGCTCATGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: DLILSLFPLVPGVPSASGGAVYP*PGSCRA
Trigger: AGCTCTGCATGAGCCTGGGCAAGGATACACTGCTCC...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CGTGATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGCGCCAGACATCCCGTaGCTCACGTTGCACATGGTA +
Preference number: 4 (lower is better)
Translates to: RDLILSLFPLVPGVPSASAPDIP*LTLHMV
Trigger: TACCATGTGCAACGTGAGGCACGGGATGTCTGGCGC...TGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTTTATTGCCAGCGCCTCCTCTTaGCGGGCCTCCAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: GPTPRLKGLQDSGLLLFIASASS*RASKNL
Trigger: CAAGTTCTTGGAGGCCCGGCAAGAGGAGGCGCTGGC...AATAAAAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACCTCTACAATACTCTTTaGCCAGGTCAAAGCGGTTCA +
Preference number: 4 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHLYNTL*PGQSGS
Trigger: TGAACCGCTTTGACCTGGCCAAAGAGTATTGTAGAG...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGAGGAGACAGTCAGCGTaGAACATGTGGCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: DLILSLFPLVPGVPSASGRRQSA*NMWPQR
Trigger: TCTCTGTGGCCACATGTTTCACGCTGACTGTCTCCT...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GTGAAGGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTAACTGGAAGAGGCGCTaGCGAGTGGTGGCAATGACA +
Preference number: 4 (lower is better)
Translates to: VKDLRQGSKACRTLDFFFNWKRR*RVVAMT
Trigger: TGTCATTGCCACCACTCGGCAGCGCCTCTTCCAGTT...AAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGCTGTGCCGACCAGGATaGGGCCGGTGCTGCTCTCGT +
Preference number: 4 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVLCRPG*GRCCSR
Trigger: ACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAG...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGCCACAGCTCGGCCTATaGACTGGAAGAGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVPQLGL*TGRGAA
Trigger: GGCAGCGCCTCTTCCAGTTCATAGGCCGAGCTGTGG...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGGGGCCTTCTGTCCATTaGGGTTCATGTAAAGGACCT +
Preference number: 4 (lower is better)
Translates to: DLILSLFPLVPGVPSASGGPSVH*GSCKGP
Trigger: AGGTCCTTTACATGAACCGCAATGGACAGAAGGCCC...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp TTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGCACAAGAGCCACTCTTTGTaGCGAGGGCTACTGAGAAAA +
Preference number: 4 (lower is better)
Translates to: LILSLFPLVPGVPSASGHKSHSL*RGLLRK
Trigger: TTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTT...GTGCCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACTCCTCCTGCACCACGTaGCGGGCGATCTTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDSSCTT*RAILSH
Trigger: ATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGA...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACAGGCTCATGCAGAGCTaGTTGCAGGAGACCACGAGG +
Preference number: 4 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDRLMQS*LQETTR
Trigger: CCTCGTGGTCTCCTGCAATCAGCTCTGCATGAGCCT...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp GTGAAGGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTTCCAGGAACATCTTGTaGACTTTGGCGTCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: VKDLRQGSKACRTLDFFFSRNIL*TLASSL
Trigger: CAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGA...AAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGGCTCGGCCTATGAACTaGAAGAGGCGCTGCCGAGTG +
Preference number: 4 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVARPMN*KRRCRV
Trigger: CACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGC...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACGAGAGTCAGAGCATCTaGGTCACCCTGCAGAGCACC +
Preference number: 4 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDESQSI*VTLQST
Trigger: GGTGCTCTGCAGGGTGACCCAGATGCTCTGACTCTC...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACGTGAAGTCAACCCGCTaGTTGGTGAAGATGGGCACC +
Preference number: 4 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDVKSTR*LVKMGT
Trigger: GGTGCCCATCTTCACCAAGCAGCGGGTTGACTTCAC...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGTCTTCCATCTCGCGCTaGAGCTCCTGGATGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVSSISR*SSWMWW
Trigger: CCACCACATCCAGGAGCTGCAGCGCGAGATGGAAGA...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp ATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGAAGGACTGGCCAAGCAGGCCATaGCTGTCTGGACGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: IYSQRRKQAKPASPPVKDWPSRP*LSGRLL
Trigger: AAGAAGACGTCCAGACAGCCATGGCCTGCTTGGCCA...GTCCTTCACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR GCA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTAGCACAAAGTCGAAGTaGATATTTGAGATCATAATG +
Preference number: 4 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPSTKSK*IFEIIM
Trigger: CATTATGATCTCAAATATGCACTTCGACTTTGTGCT...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CCA 90 bp CGTGATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAATTGCCTCCTTGAAGTaGTCGATGGTGACAAAGTCA +
Preference number: 4 (lower is better)
Translates to: RDLILSLFPLVPGVPSASIASLK*SMVTKS
Trigger: TGACTTTGTCACCATCGACCACTTCAAGGAGGCAAT...TGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
3UTR CAA 72 bp ACCTGTTCTATTCCACACTTGGTGCAGGCAGCCTTCTaGTGGCATTCCATCCTTTCTTGGGATCATATCCTG +
Preference number: 4 (lower is better)
Translates to: TCSIPHLVQAAF*WHSILSWDHIL
Trigger: CAGGATATGATCCCAAGAAAGGATGGAATGCCACAAGAAGGCTGCCTGCACCAAGTGTGGAATAGAACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR TCA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGGTCGAAGTGCATATTTaGGATCATAATGTACACGGT +
Preference number: 4 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVVEVHI*DHNVHG
Trigger: ACCGTGTACATTATGATCTCAAATATGCACTTCGAC...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp TCGGAGGAGGCGCCGCCCCAAGCTTGCGCTGCAGTTCCTCAAGTCTaGCCTGCTTGTAGGCAGGGAGGCCGGGCCGCACAGCCTGTAGGA +
Preference number: 5 (lower is better)
Translates to: SEEAPPQACAAVPQV*PACRQGGRAAQPVG
Trigger: TCCTACAGGCTGTGCGGCCCGGCCTCCCTGCCTACAAGCAGGCCAGACTTGAGGAACTGCAGCGCAAGCTTGGGGCGGCGCCTCCTCCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp CCTGCTGGGCCTCACCGCCCTGGCTGTAGTTCACCAGGGCAGGGATaGGCTGCCGAGCATCCAGCCGGCTGCCCATCTCAATCCAGGCGT +
Preference number: 5 (lower is better)
Translates to: PAGPHRPGCSSPGQG*AAEHPAGCPSQSRR
Trigger: ACGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGGCAGCTCATCCCTGCCCTGGTGAACTACAGCCAGGGCGGTGAGGCCCAGCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp GTGGCCTGGGTACGCTCCGTCGGCTTCAAGCCGGCCAGTTTCCGCTaGAGAAACTCGGCCAGCGCCTCCTCTTGCCGGGCCTCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: VAWVRSVGFKPASFR*RNSASASSCRASKN
Trigger: GTTCTTGGAGGCCCGGCAAGAGGAGGCGCTGGCCGAGTTTCTTCAGCGGAAACTGGCCGGCTTGAAGCCGACGGAGCGTACCCAGGCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CCTGCAGAGCACCCAGGCGGCTCAGGTAGAGCTCTGTCAGCCAAGTaGTCAGCAGTGTGGCCTGGGTACGCTCCGTCGGCTTCAAGCCGG +
Preference number: 5 (lower is better)
Translates to: PAEHPGGSGRALSAK*SAVWPGYAPSASSR
Trigger: CCGGCTTGAAGCCGACGGAGCGTACCCAGGCCACACTGCTGACCACTTGGCTGACAGAGCTCTACCTGAGCCGCCTGGGTGCTCTGCAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp GAGCTGTGCCGACCAGGATGGGGCCGGTGCTGCTCTCGTTGCCCATaGCCTTGTTCCATCCCACACTCTCCACCAGCTGTCCCTTCCAGC +
Preference number: 5 (lower is better)
Translates to: ELCRPGWGRCCSRCP*PCSIPHSPPAVPSS
Trigger: GCTGGAAGGGACAGCTGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CCAGGCGGCTCAGGTAGAGCTCTGTCAGCCAAGTGGTCAGCAGTGTaGCCTGGGTACGCTCCGTCGGCTTCAAGCCGGCCAGTTTCCGCT +
Preference number: 5 (lower is better)
Translates to: PGGSGRALSAKWSAV*PGYAPSASSRPVSA
Trigger: AGCGGAAACTGGCCGGCTTGAAGCCGACGGAGCGTACCCAGGCCACACTGCTGACCACTTGGCTGACAGAGCTCTACCTGAGCCGCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp AGCGGCCTCGGAGCTCCTGCAAGTCTCGTCGGATGCGCTGGGCACTaGCTGTGGCTTCTTCCATCTCGCGCTGCAGCTCCTGGATGTGGT +
Preference number: 5 (lower is better)
Translates to: SGLGAPASLVGCAGH*LWLLPSRAAAPGCG
Trigger: ACCACATCCAGGAGCTGCAGCGCGAGATGGAAGAAGCCACAGCCAGTGCCCAGCGCATCCGACGAGACTTGCAGGAGCTCCGAGGCCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GGGCCTGGCTTTCGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACCCCAGTTCCACACGGTaGGGCTCACTTGCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: GPGFRRRVWQLDPCLSTHPSSTR*GSLALP
Trigger: GGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGG...GTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp GTCCTTGAGCTGTGCCGACCAGGATGGGGCCGGTGCTGCTCTCGTTaGCCATGGCCTTGTTCCATCCCACACTCTCCACCAGCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: VLELCRPGWGRCCSR*PWPCSIPHSPPAVP
Trigger: AGGGACAGCTGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp TACACGGTGCGGGCTGGCCCCAGCTTGTTCCAGGTATGCCAGAAGTaGGGCTGGCTGGCCACGGGCATACAGGGACAGCAGGTAGTTGTG +
Preference number: 5 (lower is better)
Translates to: YTVRAGPSLFQVCQK*GWLATGIQGQQVVV
Trigger: CACAACTACCTGCTGTCCCTGTATGCCCGTGGCCAGCCAGCCTCACTTCTGGCATACCTGGAACAAGCTGGGGCCAGCCCGCACCGTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CCAGCTGTCCCTTCCAGCGAGCCAGGGGCCGGGCCTTCTGTCCATTaGGGTTCATGTAAAGGACCTCGGTGCTACTCAGCGCAACCAGCA +
Preference number: 5 (lower is better)
Translates to: PAVPSSEPGAGPSVH*GSCKGPRCYSAQPA
Trigger: TGCTGGTTGCGCTGAGTAGCACCGAGGTCCTTTACATGAACCGCAATGGACAGAAGGCCCGGCCCCTGGCTCGCTGGAAGGGACAGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CCCGGTCGGCCAGCAGCAGTAGGAAATGGAACTGGGTCAGGACGATaGCTAAGGGTGGATTGGCCCCAGGACCAACCCCCGCTGGGTATT +
Preference number: 5 (lower is better)
Translates to: PGRPAAVGNGTGSGR*LRVDWPQDQPPLGI
Trigger: AATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CACACAGCCTCCACCCGGTCGGCCAGCAGCAGTAGGAAATGGAACTaGGTCAGGACGATGGCTAAGGGTGGATTGGCCCCAGGACCAACC +
Preference number: 5 (lower is better)
Translates to: HTASTRSASSSRKWN*VRTMAKGGLAPGPT
Trigger: GGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGGTGGAGGCTGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp AGCGTGCACACAGCCTCCACCCGGTCGGCCAGCAGCAGTAGGAAATaGAACTGGGTCAGGACGATGGCTAAGGGTGGATTGGCCCCAGGA +
Preference number: 5 (lower is better)
Translates to: SVHTASTRSASSSRK*NWVRTMAKGGLAPG
Trigger: TCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGGTGGAGGCTGTGTGCACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp TCGATCTTGAGCAAGGGGCAGCTGGCCAAGCAGGCCATGGCTGTCTaGACGTCTTCTTCCTCCTGCACCACGTGCCGGGCGATCTTGAGC +
Preference number: 5 (lower is better)
Translates to: SILSKGQLAKQAMAV*TSSSSCTTCRAILS
Trigger: GCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGCCATGGCCTGCTTGGCCAGCTGCCCCTTGCTCAAGATCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GCCTCAGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCTCACAGGTGGAGCATTaGTCCTGGGGCTCCACGGTG +
Preference number: 5 (lower is better)
Translates to: ASGHPTLEPQVTLASPHASQVEH*SWGSTV
Trigger: CACCGTGGAGCCCCAGGACAAATGCTCCACCTGTGA...GGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCTGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp GCTTCAGTATCTTCCACAGCTCGGCCTATGAACTGGAAGAGGCGCTaGCGAGTGGTGGCAATGACAAAGCCTCGGCCATCGGGGCCACGC +
Preference number: 5 (lower is better)
Translates to: ASVSSTARPMNWKRR*RVVAMTKPRPSGPR
Trigger: GCGTGGCCCCGATGGCCGAGGCTTTGTCATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCTGTGGAAGATACTGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp GCAAAGGAAAGTCACAGGTGGAGCATTTGTCCTGGGGCTCCACGGTaGCATAGCGGCCTCGGAGCTCCTGCAAGTCTCGTCGGATGCGCT +
Preference number: 5 (lower is better)
Translates to: AKESHRWSICPGAPR*HSGLGAPASLVGCA
Trigger: AGCGCATCCGACGAGACTTGCAGGAGCTCCGAGGCCGCTATGGCACCGTGGAGCCCCAGGACAAATGCTCCACCTGTGACTTTCCTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCACGGAGCAGTGTATCCTaGCCCAGGCTCATGCAGAGC +
Preference number: 5 (lower is better)
Translates to: KTSRLKLGCNPLTIADPARSSVS*PRLMQS
Trigger: GCTCTGCATGAGCCTGGGCAAGGATACACTGCTCCG...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GTTGAGGCAGAAGAGGGCGAGCTGGAGGTCCAGAGGCTGTGGAAGGACGGAGGATTGGGCTCACTTGCCTaGCCCAAGTCAATGCGGAGC +
Preference number: 5 (lower is better)
Translates to: VEAEEGELEVQRLWKDGGLGSLA*PKSMRS
Trigger: GCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAA...TCCTCCGTCCTTCCACAGCCTCTGGACCTCCAGCTCGCCCTCTTCTGCCTCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp AAAACCTCCCGGCTGAAGCTTGGCTGCAACCCCCTCACAATCGCAGACCCGGCAAGCACATCCTCGATCTaGAGCAAGGGGCAGCTGGCC +
Preference number: 5 (lower is better)
Translates to: KTSRLKLGCNPLTIADPASTSSI*SKGQLA
Trigger: GGCCAGCTGCCCCTTGCTCAAGATCGAGGATGTGCT...TGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGGAGGTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTTCATCCAGGTCAGCCTaGAGCTGCTCCCGACTGGGC +
Preference number: 5 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPSSRSA*SCSRLG
Trigger: GCCCAGTCGGGAGCAGCTCAAGGCTGACCTGGATGA...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CAAAGATCTGTCCTTGAGCTGTGCCGACCAGGATGGGGCCGGTGCTaGTCTCGTTGCCCATGGCCTTGTTCCATCCCACACTCTCCACCA +
Preference number: 5 (lower is better)
Translates to: QRSVLELCRPGWGRC*SRCPWPCSIPHSPP
Trigger: TGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGACAGATCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp ACTTCTCCAGGAAGTGATCCCGTAGCACCACCTGCCCTGTTAGCGTaGACACAGCCTCCACCCGGTCGGCCAGCAGCAGTAGGAAATGGA +
Preference number: 5 (lower is better)
Translates to: TSPGSDPVAPPALLA*TQPPPGRPAAVGNG
Trigger: TCCATTTCCTACTGCTGCTGGCCGACCGGGTGGAGGCTGTGTGCACGCTAACAGGGCAGGTGGTGCTACGGGATCACTTCCTGGAGAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp GCGAAGCCCTGGGCTTCAGTATCTTCCACAGCTCGGCCTATGAACTaGAAGAGGCGCTGCCGAGTGGTGGCAATGACAAAGCCTCGGCCA +
Preference number: 5 (lower is better)
Translates to: AKPWASVSSTARPMN*KRRCRVVAMTKPRP
Trigger: TGGCCGAGGCTTTGTCATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCTGTGGAAGATACTGAAGCCCAGGGCTTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp GCAGTAGGAAATGGAACTGGGTCAGGACGATGGCTAAGGGTGGATTaGCCCCAGGACCAACCCCCGCTGGGTATTCCCACACTCGCTCCT +
Preference number: 5 (lower is better)
Translates to: AVGNGTGSGRWLRVD*PQDQPPLGIPTLAP
Trigger: AGGAGCGAGTGTGGGAATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp AGTACGGAAACACTCCCGTGTGTCCCGGTAGAGAGTCAGAGCATCTaGGTCACCCTGCAGAGCACCCAGGCGGCTCAGGTAGAGCTCTGT +
Preference number: 5 (lower is better)
Translates to: STETLPCVPVESQSI*VTLQSTQAAQVELC
Trigger: ACAGAGCTCTACCTGAGCCGCCTGGGTGCTCTGCAGGGTGACCCAGATGCTCTGACTCTCTACCGGGACACACGGGAGTGTTTCCGTACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCACACGGTTGGGCTCACTaGCCTTGCCCAAGTCAATGC +
Preference number: 5 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSHGWAH*PCPSQC
Trigger: GCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTG...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GCCTCAGGGCACCCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCTGGTCCAGGAACATCTaGTGGACTTTGGCGTCGTCC +
Preference number: 5 (lower is better)
Translates to: ASGHPTLEPQVTLASPHAWSRNI*WTLASS
Trigger: GGACGACGCCAAAGTCCACAAGATGTTCCTGGACCA...GGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGGGTGCCCTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp AAGTCAATGCGGAGCAGTGTATCCTTGCCCAGGCTCATGCAGAGCTaGTTGCAGGAGACCACGAGGCTAGTGATCCGCTCCGAGGGGGTG +
Preference number: 5 (lower is better)
Translates to: KSMRSSVSLPRLMQS*LQETTRLVIRSEGV
Trigger: CACCCCCTCGGAGCGGATCACTAGCCTCGTGGTCTCCTGCAATCAGCTCTGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp GAAGAAACTCGGCCAGCGCCTCCTCTTGCCGGGCCTCCAAGAACTTaGGGGCAATCTCCTCAAAATAGCTCTGGGTCAGCGCGTAGCAGC +
Preference number: 5 (lower is better)
Translates to: EETRPAPPLAGPPRT*GQSPQNSSGSARSS
Trigger: GCTGCTACGCGCTGACCCAGAGCTATTTTGAGGAGATTGCCCTCAAGTTCTTGGAGGCCCGGCAAGAGGAGGCGCTGGCCGAGTTTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CTTACATACCCAGAATGGGGGATGCCCACGCTAGGGCAACCAGTCTaGAAGACGGCCGAGCGGGACAATGAGTCCTCGTACTCATCCAGG +
Preference number: 5 (lower is better)
Translates to: LTYPEWGMPTLGQPV*KTAERDNESSYSSR
Trigger: CCTGGATGAGTACGAGGACTCATTGTCCCGCTCGGCCGTCTTGCAGACTGGTTGCCCTAGCGTGGGCATCCCCCATTCTGGGTATGTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp GGGGCCGGGCCTTCTGTCCATTGCGGTTCATGTAAAGGACCTCGGTaGTACTCAGCGCAACCAGCAGATGAGAGCCAGTATGGTCCAGGA +
Preference number: 5 (lower is better)
Translates to: GAGPSVHCGSCKGPR*YSAQPADESQYGPG
Trigger: TCCTGGACCATACTGGCTCTCATCTGCTGGTTGCGCTGAGTAGCACCGAGGTCCTTTACATGAACCGCAATGGACAGAAGGCCCGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CTTCAAAGATCTGTCCTTGAGCTGTGCCGACCAGGATGGGGCCGGTaGTGCTCTCGTTGCCCATGGCCTTGTTCCATCCCACACTCTCCA +
Preference number: 5 (lower is better)
Translates to: LQRSVLELCRPGWGR*CSRCPWPCSIPHSP
Trigger: TGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGACAGATCTTTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CAGCTGGCCAAGCAGGCCATGGCTGTCTGGACGTCTTCTTCCTCCTaGACCACGTGCCGGGCGATCTTGAGCCATAGTTTCTTGCGAAGT +
Preference number: 5 (lower is better)
Translates to: QLAKQAMAVWTSSSS*TTCRAILSHSFLRS
Trigger: ACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGCCATGGCCTGCTTGGCCAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp TGGAAGGACGGAGGAAGGAAGGACAGCGGGCCACTCAGTCCAGGTGAACATGCTAACATCTTGTGGACTTaGGCGTCGTCCTTGCGCCCC +
Preference number: 5 (lower is better)
Translates to: WKDGGRKDSGPLSPGEHANILWT*ASSLRP
Trigger: GGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTT...AGCATGTTCACCTGGACTGAGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp TTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGCACCGGGCTGGCCCCAGCTaGTTCCAGGTATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: LILSLFPLVPGVPSASGHRAGPS*FQVCQK
Trigger: CTTCTGGCATACCTGGAACAAGCTGGGGCCAGCCCG...GTGCCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GGGCCTGGCTTTCGCAGGAGGGTCTGGCAGCTGGATCCATGTCTGTCCACCCACCTACAGATTGCCTCCTaGAAGTGGTCGATGGTGACA +
Preference number: 5 (lower is better)
Translates to: GPGFRRRVWQLDPCLSTHLQIAS*KWSMVT
Trigger: TGTCACCATCGACCACTTCAAGGAGGCAATCTGTAG...GTGGGTGGACAGACATGGATCCAGCTGCCAGACCCTCCTGCGAAAGCCAGGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp GAGTCCTTCACCATGTGCCTCAGTGGTCCAAACTTCTCCAGGAAGTaGTCCCGTAGCACCACCTGCCCTGTTAGCGTGCACACAGCCTCC +
Preference number: 5 (lower is better)
Translates to: ESFTMCLSGPNFSRK*SRSTTCPVSVHTAS
Trigger: GGAGGCTGTGTGCACGCTAACAGGGCAGGTGGTGCTACGGGATCACTTCCTGGAGAAGTTTGGACCACTGAGGCACATGGTGAAGGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp AGCCAGTATGGTCCAGGAACATCTTGTGGACTTTGGCGTCGTCCTTaGGCCCCAGTTCCACACGGTTGGGCTCACTTGCCTTGCCCAAGT +
Preference number: 5 (lower is better)
Translates to: SQYGPGTSCGLWRRP*APVPHGWAHLPCPS
Trigger: ACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACCATACTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp CAGGTCAAAGCGGTTCATGTCCAAGTAGGTGCGCCAGACATCCCGTaGCTCACGTTGCACATGGTAGCGGAAGACCGCACGCTCAGTGTA +
Preference number: 5 (lower is better)
Translates to: QVKAVHVQVGAPDIP*LTLHMVAEDRTLSV
Trigger: TACACTGAGCGTGCGGTCTTCCGCTACCATGTGCAACGTGAGGCACGGGATGTCTGGCGCACCTACTTGGACATGAACCGCTTTGACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp AGCAGCTCGTGGATAGAGGCCCGGCTGGCAAAGAGCCACTCTTTGTaGCGAGGGCTACTGAGAAAAGTACGGAAACACTCCCGTGTGTCC +
Preference number: 5 (lower is better)
Translates to: SSSWIEARLAKSHSL*RGLLRKVRKHSRVS
Trigger: GGACACACGGGAGTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCACGAGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp TCTTGTGGACTTTGGCGTCGTCCTTGCGCCCCAGTTCCACACGGTTaGGCTCACTTGCCTTGCCCAAGTCAATGCGGAGCAGTGTATCCT +
Preference number: 5 (lower is better)
Translates to: SCGLWRRPCAPVPHG*AHLPCPSQCGAVYP
Trigger: AGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CCAGCAGATGAGAGCCAGTATGGTCCAGGAACATCTTGTGGACTTTaGCGTCGTCCTTGCGCCCCAGTTCCACACGGTTGGGCTCACTTG +
Preference number: 5 (lower is better)
Translates to: PADESQYGPGTSCGL*RRPCAPVPHGWAHL
Trigger: CAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACCATACTGGCTCTCATCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp AGGCTGGCTGGCCACGGGCATACAGGGACAGCAGGTAGTTGTGAATaGCCTGCTCCGTCTCACCGAGCACATTCACGCAGAATTCCATGT +
Preference number: 5 (lower is better)
Translates to: RLAGHGHTGTAGSCE*PAPSHRAHSRRIPC
Trigger: ACATGGAATTCTGCGTGAATGTGCTCGGTGAGACGGAGCAGGCCATTCACAACTACCTGCTGTCCCTGTATGCCCGTGGCCAGCCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACCGGGCCTCCAAGAACTaGAGGGCAATCTCCTCAAAA +
Preference number: 5 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHRASKN*RAISSK
Trigger: TTTTGAGGAGATTGCCCTCAAGTTCTTGGAGGCCCG...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGCAAAGAGCCACTCTTaGTGCCGAGGGCTACTGAGA +
Preference number: 5 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPAKSHS*CRGLLR
Trigger: TCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGC...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp TCCTGCATGATCACTGCAAAATACACCATGTGCTCTGTGTCTCCGTaGCTGGCGAGCAGCTCGTGGATAGAGGCCCGGCTGGCAAAGAGC +
Preference number: 5 (lower is better)
Translates to: SCMITAKYTMCSVSP*LASSSWIEARLAKS
Trigger: GCTCTTTGCCAGCCGGGCCTCTATCCACGAGCTGCTCGCCAGTCACGGAGACACAGAGCACATGGTGTATTTTGCAGTGATCATGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp AGGCGCGGTGGTGGCCGTGCTCAGCACAAAGTCGAAGTGCATATTTaGGATCATAATGTACACGGTGCGGGCTGGCCCCAGCTTGTTCCA +
Preference number: 5 (lower is better)
Translates to: RRGGGRAQHKVEVHI*DHNVHGAGWPQLVP
Trigger: TGGAACAAGCTGGGGCCAGCCCGCACCGTGTACATTATGATCTCAAATATGCACTTCGACTTTGTGCTGAGCACGGCCACCACCGCGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp CTGTCTGGACGTCTTCTTCCTCCTGCACCACGTGCCGGGCGATCTTaGGCCATAGTTTCTTGCGAAGTTCCTCATCCTCCTCCGGCAAGT +
Preference number: 5 (lower is better)
Translates to: LSGRLLPPAPRAGRS*AIVSCEVPHPPPAS
Trigger: ACTTGCCGGAGGAGGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp AAGCAGGCCATGGCTGTCTGGACGTCTTCTTCCTCCTGCACCACGTaGCGGGCGATCTTGAGCCATAGTTTCTTGCGAAGTTCCTCATCC +
Preference number: 5 (lower is better)
Translates to: KQAMAVWTSSSSCTT*RAILSHSFLRSSSS
Trigger: GGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGCCATGGCCTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAGGGCCGGTGCTGCTCTCGTaGCCCATGGCCTTGTTCCAT +
Preference number: 5 (lower is better)
Translates to: DLILSLFPLVPGVPSASGPVLLS*PMALFH
Trigger: ATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGG...CCCTGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 90 bp CCAGGACCGTGTCCAGGCAATCAGGCCGCTCTCTACAATACTCTTTaGCCAGGTCAAAGCGGTTCATGTCCAAGTAGGTGCGCCAGACAT +
Preference number: 5 (lower is better)
Translates to: PGPCPGNQAALYNTL*PGQSGSCPSRCARH
Trigger: ATGTCTGGCGCACCTACTTGGACATGAACCGCTTTGACCTGGCCAAAGAGTATTGTAGAGAGCGGCCTGATTGCCTGGACACGGTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp CCGACACTGGAGCCCCAGGTCACATTAGCATCTCCACATGCCCACTCTCCCCACTCTCTACAATACTCTTaGGCCAGGTCAAAGCGGTTC +
Preference number: 5 (lower is better)
Translates to: PTLEPQVTLASPHAHSPHSLQYS*ARSKRF
Trigger: GAACCGCTTTGACCTGGCCAAAGAGTATTGTAGAGA...GTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACCTGGGGCTCCAGTGTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp AAGCACAGCCAGGGCCTCCTCGTAAGCCTCATGCTGGCAGTGGTATaGGACCACCCGTTCATAGTCCTGCATGATCACTGCAAAATACAC +
Preference number: 5 (lower is better)
Translates to: KHSQGLLVSLMLAVV*DHPFIVLHDHCKIH
Trigger: GTGTATTTTGCAGTGATCATGCAGGACTATGAACGGGTGGTCGCATACCACTGCCAGCATGAGGCTTACGAGGAGGCCCTGGCTGTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GTGAAGGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTAAGTCAACCCGCTGCTaGGTGAAGATGGGCACCTCC +
Preference number: 5 (lower is better)
Translates to: VKDLRQGSKACRTLDFFFKSTRC*VKMGTS
Trigger: GGAGGTGCCCATCTTCACCAAGCAGCGGGTTGACTT...AAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp CGTGATTTAATACTCTCCCTATTTCCCCTTGTCCCAGGTGTGCCCTCAGCCTCAATCCCGTGCCTCACGTaGCACATGGTAGCGGAAGAC +
Preference number: 5 (lower is better)
Translates to: RDLILSLFPLVPGVPSASIPCLT*HMVAED
Trigger: GTCTTCCGCTACCATGTGCAACGTGAGGCACGGGAT...TGAGGCTGAGGGCACACCTGGGACAAGGGGAAATAGGGAGAGTATTAAATCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp ATCTCCACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTTTGAGCCATAGTTTCTaGCGAAGTTCCTCATCCTCC +
Preference number: 5 (lower is better)
Translates to: ISTCPLSPQVPRVCLLAPLSHSF*RSSSSS
Trigger: GGAGGATGAGGAACTTCGCAAGAAACTATGGCTCAA...AGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 90 bp TACAATACTCTTTGGCCAGGTCAAAGCGGTTCATGTCCAAGTAGGTaGGCCAGACATCCCGTGCCTCACGTTGCACATGGTAGCGGAAGA +
Preference number: 5 (lower is better)
Translates to: YNTLWPGQSGSCPSR*ARHPVPHVAHGSGR
Trigger: TCTTCCGCTACCATGTGCAACGTGAGGCACGGGATGTCTGGCGCACCTACTTGGACATGAACCGCTTTGACCTGGCCAAAGAGTATTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp ACATGCCCACTCTCCCCACAAGTGCCTAGGGTCTGCCTGCTTGCTCCTGGGTCATCACTATACCCCAAATaGCTAGGAAACTCACGGAAT +
Preference number: 5 (lower is better)
Translates to: TCPLSPQVPRVCLLAPGSSLYPK*LGNSRN
Trigger: ATTCCGTGAGTTTCCTAGCAATTTGGGGTATAGTGA...TGACCCAGGAGCAAGCAGGCAGACCCTAGGCACTTGTGGGGAGAGTGGGCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 90 bp CAGCGTGAAACATGTGGCCACAGAGAAACAGGTAAAAGGGTCGGTTaGGCAAAGGAAAGTCACAGGTGGAGCATTTGTCCTGGGGCTCCA +
Preference number: 5 (lower is better)
Translates to: QRETCGHRETGKRVG*AKESHRWSICPGAP
Trigger: TGGAGCCCCAGGACAAATGCTCCACCTGTGACTTTCCTTTGCTCAACCGACCCTTTTACCTGTTTCTCTGTGGCCACATGTTTCACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp GGACCTACGCCAAGGCTCAAAGGCTTGCAGGACTCTGGACTTCTTCTTTTTATTTCGTTGCCCATGGCCTaGTTCCATCCCACACTCTCC +
Preference number: 5 (lower is better)
Translates to: GPTPRLKGLQDSGLLLFISLPMA*FHPTLS
Trigger: GGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGA...AATAAAAAGAAGAAGTCCAGAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS-3UTR CAA 90 bp CTAAACATTTATAGTCAGAGAAGGAAACAAGCAAAACCTGCCTCACCCCCAGTGTTCAAAGATCTGTCCTaGAGCTGTGCCGACCAGGAT +
Preference number: 5 (lower is better)
Translates to: LNIYSQRRKQAKPASPPVFKDLS*SCADQD
Trigger: ATCCTGGTCGGCACAGCTCAAGGACAGATCTTTGAA...CACTGGGGGTGAGGCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp GCCCCAGCTTCTGCCTCCTTGGCCTTCACGGAGCCTTaGGTCGGAGGAGGCGCCGCCCCAAGCTTGCGCTGC +
Preference number: 6 (lower is better)
Translates to: APASASLAFTEP*VGGGAAPSLRC
Trigger: GCAGCGCAAGCTTGGGGCGGCGCCTCCTCCGACCAAAGGCTCCGTGAAGGCCAAGGAGGCAGAAGCTGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp CCCCAGCTTCTGCCTCCTTGGCCTTCACGGAGCCTTTaGTCGGAGGAGGCGCCGCCCCAAGCTTGCGCTGCA +
Preference number: 6 (lower is better)
Translates to: PQLLPPWPSRSL*SEEAPPQACAA
Trigger: TGCAGCGCAAGCTTGGGGCGGCGCCTCCTCCGACCAAAGGCTCCGTGAAGGCCAAGGAGGCAGAAGCTGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp GTGCCGACCAGGATGGGGCCGGTGCTGCTCTCGTTGCCCATGGCCTaGTTCCATCCCACACTCTCCACCAGCTGTCCCTTCCAGCGAGCC +
Preference number: 6 (lower is better)
Translates to: VPTRMGPVLLSLPMA*FHPTLSTSCPFQRA
Trigger: GGCTCGCTGGAAGGGACAGCTGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp CCTCACCGCCCTGGCTGTAGTTCACCAGGGCAGGGATaGGCTGCCGAGCATCCAGCCGGCTGCCCATCTCAA +
Preference number: 6 (lower is better)
Translates to: PHRPGCSSPGQG*AAEHPAGCPSQ
Trigger: TTGAGATGGGCAGCCGGCTGGATGCTCGGCAGCTCATCCCTGCCCTGGTGAACTACAGCCAGGGCGGTGAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp CACCCAGGCGGCTCAGGTAGAGCTCTGTCAGCCAAGTaGTCAGCAGTGTGGCCTGGGTACGCTCCGTCGGCT +
Preference number: 6 (lower is better)
Translates to: HPGGSGRALSAK*SAVWPGYAPSA
Trigger: AGCCGACGGAGCGTACCCAGGCCACACTGCTGACCACTTGGCTGACAGAGCTCTACCTGAGCCGCCTGGGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp GCTGTGCCGACCAGGATGGGGCCGGTGCTGCTCTCGTaGCCCATGGCCTTGTTCCATCCCACACTCTCCACC +
Preference number: 6 (lower is better)
Translates to: AVPTRMGPVLLS*PMALFHPTLST
Trigger: GGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp CCACAGTACACACACTCAGCAGCCACCAGCTCATCCAGGTCAGCCTaGAGCTGCTCCCGACTGGGCCCCACCGCTGCAGCCCCAGCTTCT +
Preference number: 6 (lower is better)
Translates to: PQYTHSAATSSSRSA*SCSRLGPTAAAPAS
Trigger: AGAAGCTGGGGCTGCAGCGGTGGGGCCCAGTCGGGAGCAGCTCAAGGCTGACCTGGATGAGCTGGTGGCTGCTGAGTGTGTGTACTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CTGTGCCGACCAGGATGGGGCCGGTGCTGCTCTCGTTaGCCATGGCCTTGTTCCATCCCACACTCTCCACCA +
Preference number: 6 (lower is better)
Translates to: LCRPGWGRCCSR*PWPCSIPHSPP
Trigger: TGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp GTCCTTGAGCTGTGCCGACCAGGATGGGGCCGGTGCTaGTCTCGTTGCCCATGGCCTTGTTCCATCCCACAC +
Preference number: 6 (lower is better)
Translates to: VLELCRPGWGRC*SRCPWPCSIPH
Trigger: GTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp GGAAGTGATCCCGTAGCACCACCTGCCCTGTTAGCGTaGACACAGCCTCCACCCGGTCGGCCAGCAGCAGTA +
Preference number: 6 (lower is better)
Translates to: GSDPVAPPALLA*TQPPPGRPAAV
Trigger: TACTGCTGCTGGCCGACCGGGTGGAGGCTGTGTGCACGCTAACAGGGCAGGTGGTGCTACGGGATCACTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CATAGCGGCCTCGGAGCTCCTGCAAGTCTCGTCGGATaGGCTGGGCACTGGCTGTGGCTTCTTCCATCTCGC +
Preference number: 6 (lower is better)
Translates to: HSGLGAPASLVG*AGHWLWLLPSR
Trigger: GCGAGATGGAAGAAGCCACAGCCAGTGCCCAGCGCATCCGACGAGACTTGCAGGAGCTCCGAGGCCGCTATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp CGACCAGGATGGGGCCGGTGCTGCTCTCGTTGCCCATaGCCTTGTTCCATCCCACACTCTCCACCAGCTGTC +
Preference number: 6 (lower is better)
Translates to: RPGWGRCCSRCP*PCSIPHSPPAV
Trigger: GACAGCTGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CCAGAATGGGGGATGCCCACGCTAGGGCAACCAGTCTaGAAGACGGCCGAGCGGGACAATGAGTCCTCGTAC +
Preference number: 6 (lower is better)
Translates to: PEWGMPTLGQPV*KTAERDNESSY
Trigger: GTACGAGGACTCATTGTCCCGCTCGGCCGTCTTGCAGACTGGTTGCCCTAGCGTGGGCATCCCCCATTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CCTTCCAGCGAGCCAGGGGCCGGGCCTTCTGTCCATTaGGGTTCATGTAAAGGACCTCGGTGCTACTCAGCG +
Preference number: 6 (lower is better)
Translates to: PSSEPGAGPSVH*GSCKGPRCYSA
Trigger: CGCTGAGTAGCACCGAGGTCCTTTACATGAACCGCAATGGACAGAAGGCCCGGCCCCTGGCTCGCTGGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp TCTGTCCTTGAGCTGTGCCGACCAGGATGGGGCCGGTaGTGCTCTCGTTGCCCATGGCCTTGTTCCATCCCA +
Preference number: 6 (lower is better)
Translates to: SVLELCRPGWGR*CSRCPWPCSIP
Trigger: TGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp AGTCACAGGTGGAGCATTTGTCCTGGGGCTCCACGGTaGCATAGCGGCCTCGGAGCTCCTGCAAGTCTCGTC +
Preference number: 6 (lower is better)
Translates to: SHRWSICPGAPR*HSGLGAPASLV
Trigger: GACGAGACTTGCAGGAGCTCCGAGGCCGCTATGGCACCGTGGAGCCCCAGGACAAATGCTCCACCTGTGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp AGCCGGCTGCCCATCTCAATCCAGGCGTCTACGAGCTaGCGGGGGATGTGGCGGATGAGAATGGGGGAGAAT +
Preference number: 6 (lower is better)
Translates to: SRLPISIQASTS*RGMWRMRMGEN
Trigger: ATTCTCCCCCATTCTCATCCGCCACATCCCCCGCCAGCTCGTAGACGCCTGGATTGAGATGGGCAGCCGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp CGGCCAGCGCCTCCTCTTGCCGGGCCTCCAAGAACTTaGGGGCAATCTCCTCAAAATAGCTCTGGGTCAGCG +
Preference number: 6 (lower is better)
Translates to: RPAPPLAGPPRT*GQSPQNSSGSA
Trigger: CGCTGACCCAGAGCTATTTTGAGGAGATTGCCCTCAAGTTCTTGGAGGCCCGGCAAGAGGAGGCGCTGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp GCGGTTCATGTCCAAGTAGGTGCGCCAGACATCCCGTaGCTCACGTTGCACATGGTAGCGGAAGACCGCACG +
Preference number: 6 (lower is better)
Translates to: AVHVQVGAPDIP*LTLHMVAEDRT
Trigger: CGTGCGGTCTTCCGCTACCATGTGCAACGTGAGGCACGGGATGTCTGGCGCACCTACTTGGACATGAACCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp CTTTGGCGTCGTCCTTGCGCCCCAGTTCCACACGGTTaGGCTCACTTGCCTTGCCCAAGTCAATGCGGAGCA +
Preference number: 6 (lower is better)
Translates to: LWRRPCAPVPHG*AHLPCPSQCGA
Trigger: TGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp TCCACCCGGTCGGCCAGCAGCAGTAGGAAATGGAACTaGGTCAGGACGATGGCTAAGGGTGGATTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: STRSASSSRKWN*VRTMAKGGLAP
Trigger: TGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp ACTTTGGCGTCGTCCTTGCGCCCCAGTTCCACACGGTaGGGCTCACTTGCCTTGCCCAAGTCAATGCGGAGC +
Preference number: 6 (lower is better)
Translates to: TLASSLRPSSTR*GSLALPKSMRS
Trigger: GCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp AGCAGTAGGAAATGGAACTGGGTCAGGACGATGGCTAAGGGTGGATaGGCCCCAGGACCAACCCCCGCTGGGTATTCCCACACTCGCTCC +
Preference number: 6 (lower is better)
Translates to: SSRKWNWVRTMAKGG*APGPTPAGYSHTRS
Trigger: GGAGCGAGTGTGGGAATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp TCGCTAGCTGAGAGCTCTGCTTCAAAGATCTGTCCTTaGGCTGTGCCGACCAGGATGGGGCCGGTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: SLAESSASKICP*AVPTRMGPVLL
Trigger: GAGCAGCACCGGCCCCATCCTGGTCGGCACAGCTCAAGGACAGATCTTTGAAGCAGAGCTCTCAGCTAGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp TGCGCCCCAGTTCCACACGGTTGGGCTCACTTGCCTTaGCCAAGTCAATGCGGAGCAGTGTATCCTTGCCCA +
Preference number: 6 (lower is better)
Translates to: CAPVPHGWAHLP*PSQCGAVYPCP
Trigger: TGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp GGTCCAGGAACATCTTGTGGACTTTGGCGTCGTCCTTaGGCCCCAGTTCCACACGGTTGGGCTCACTTGCCT +
Preference number: 6 (lower is better)
Translates to: GPGTSCGLWRRP*APVPHGWAHLP
Trigger: AGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp TCTTCCACAGCTCGGCCTATGAACTGGAAGAGGCGCTaGCGAGTGGTGGCAATGACAAAGCCTCGGCCATCG +
Preference number: 6 (lower is better)
Translates to: SSTARPMNWKRR*RVVAMTKPRPS
Trigger: CGATGGCCGAGGCTTTGTCATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCTGTGGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp AATGGAACTGGGTCAGGACGATGGCTAAGGGTGGATTaGCCCCAGGACCAACCCCCGCTGGGTATTCCCACA +
Preference number: 6 (lower is better)
Translates to: NGTGSGRWLRVD*PQDQPPLGIPT
Trigger: TGTGGGAATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp ACAGCCTCCACCCGGTCGGCCAGCAGCAGTAGGAAATaGAACTGGGTCAGGACGATGGCTAAGGGTGGATTG +
Preference number: 6 (lower is better)
Translates to: TASTRSASSSRK*NWVRTMAKGGL
Trigger: CAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGGTGGAGGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp GGCCACGGGCATACAGGGACAGCAGGTAGTTGTGAATaGCCTGCTCCGTCTCACCGAGCACATTCACGCAGA +
Preference number: 6 (lower is better)
Translates to: GHGHTGTAGSCE*PAPSHRAHSRR
Trigger: TCTGCGTGAATGTGCTCGGTGAGACGGAGCAGGCCATTCACAACTACCTGCTGTCCCTGTATGCCCGTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp TTGCGCCCCAGTTCCACACGGTTGGGCTCACTTGCCTaGCCCAAGTCAATGCGGAGCAGTGTATCCTTGCCC +
Preference number: 6 (lower is better)
Translates to: LRPSSTRLGSLA*PKSMRSSVSLP
Trigger: GGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp CGTCCTTGCGCCCCAGTTCCACACGGTTGGGCTCACTaGCCTTGCCCAAGTCAATGCGGAGCAGTGTATCCT +
Preference number: 6 (lower is better)
Translates to: RPCAPVPHGWAH*PCPSQCGAVYP
Trigger: AGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp TGGTCCAGGAACATCTTGTGGACTTTGGCGTCGTCCTaGCGCCCCAGTTCCACACGGTTGGGCTCACTTGCC +
Preference number: 6 (lower is better)
Translates to: WSRNILWTLASS*RPSSTRLGSLA
Trigger: GGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp AAATGGAACTGGGTCAGGACGATGGCTAAGGGTGGATaGGCCCCAGGACCAACCCCCGCTGGGTATTCCCAC +
Preference number: 6 (lower is better)
Translates to: KWNWVRTMAKGG*APGPTPAGYSH
Trigger: GTGGGAATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGCCATCGTCCTGACCCAGTTCCATTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp GTCCAAGTAGGTGCGCCAGACATCCCGTGCCTCACGTaGCACATGGTAGCGGAAGACCGCACGCTCAGTGTA +
Preference number: 6 (lower is better)
Translates to: VQVGAPDIPCLT*HMVAEDRTLSV
Trigger: TACACTGAGCGTGCGGTCTTCCGCTACCATGTGCAACGTGAGGCACGGGATGTCTGGCGCACCTACTTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp GAGCCAGTATGGTCCAGGAACATCTTGTGGACTTTGGCGTCGTCCTaGCGCCCCAGTTCCACACGGTTGGGCTCACTTGCCTTGCCCAAG +
Preference number: 6 (lower is better)
Translates to: EPVWSRNILWTLASS*RPSSTRLGSLALPK
Trigger: CTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACCATACTGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp GCGAGCAGCTCGTGGATAGAGGCCCGGCTGGCAAAGAGCCACTCTTaGTGCCGAGGGCTACTGAGAAAAGTACGGAAACACTCCCGTGTG +
Preference number: 6 (lower is better)
Translates to: ASSSWIEARLAKSHS*CRGLLRKVRKHSRV
Trigger: CACACGGGAGTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCACGAGCTGCTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp ATCTTGTGGACTTTGGCGTCGTCCTTGCGCCCCAGTTCCACACGGTaGGGCTCACTTGCCTTGCCCAAGTCAATGCGGAGCAGTGTATCC +
Preference number: 6 (lower is better)
Translates to: ILWTLASSLRPSSTR*GSLALPKSMRSSVS
Trigger: GGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGACGACGCCAAAGTCCACAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 90 bp GCTGTCTGGACGTCTTCTTCCTCCTGCACCACGTGCCGGGCGATCTaGAGCCATAGTTTCTTGCGAAGTTCCTCATCCTCCTCCGGCAAG +
Preference number: 6 (lower is better)
Translates to: AVWTSSSSCTTCRAI*SHSFLRSSSSSSGK
Trigger: CTTGCCGGAGGAGGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp GTCCTTGCGCCCCAGTTCCACACGGTTGGGCTCACTTaGCTTGCCCAAGTCAATGCGGAGCAGTGTATCCTT +
Preference number: 6 (lower is better)
Translates to: VLAPQFHTVGLT*LAQVNAEQCIL
Trigger: AAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGCGCAAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CAGGGCCTCCTCGTAAGCCTCATGCTGGCAGTGGTATaGGACCACCCGTTCATAGTCCTGCATGATCACTGC +
Preference number: 6 (lower is better)
Translates to: QGLLVSLMLAVV*DHPFIVLHDHC
Trigger: GCAGTGATCATGCAGGACTATGAACGGGTGGTCGCATACCACTGCCAGCATGAGGCTTACGAGGAGGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp AAGCAGGCCATGGCTGTCTGGACGTCTTCTTCCTCCTaGACCACGTGCCGGGCGATCTTGAGCCATAGTTTC +
Preference number: 6 (lower is better)
Translates to: KQAMAVWTSSSS*TTCRAILSHSF
Trigger: GAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGCCATGGCCTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp ACCATGTGCCTCAGTGGTCCAAACTTCTCCAGGAAGTaGTCCCGTAGCACCACCTGCCCTGTTAGCGTGCAC +
Preference number: 6 (lower is better)
Translates to: TMCLSGPNFSRK*SRSTTCPVSVH
Trigger: GTGCACGCTAACAGGGCAGGTGGTGCTACGGGATCACTTCCTGGAGAAGTTTGGACCACTGAGGCACATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp GGCTGGCAAAGAGCCACTCTTTGTGCCGAGGGCTACTaGGAAAAGTACGGAAACACTCCCGTGTGTCCCGGT +
Preference number: 6 (lower is better)
Translates to: GWQRATLCAEGY*EKYGNTPVCPG
Trigger: ACCGGGACACACGGGAGTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp ATCACTGCAAAATACACCATGTGCTCTGTGTCTCCGTaGCTGGCGAGCAGCTCGTGGATAGAGGCCCGGCTG +
Preference number: 6 (lower is better)
Translates to: ITAKYTMCSVSP*LASSSWIEARL
Trigger: CAGCCGGGCCTCTATCCACGAGCTGCTCGCCAGTCACGGAGACACAGAGCACATGGTGTATTTTGCAGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CTTTGGCCAGGTCAAAGCGGTTCATGTCCAAGTAGGTaGGCCAGACATCCCGTGCCTCACGTTGCACATGGT +
Preference number: 6 (lower is better)
Translates to: LWPGQSGSCPSR*ARHPVPHVAHG
Trigger: ACCATGTGCAACGTGAGGCACGGGATGTCTGGCGCACCTACTTGGACATGAACCGCTTTGACCTGGCCAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp GGTGGCCGTGCTCAGCACAAAGTCGAAGTGCATATTTaGGATCATAATGTACACGGTGCGGGCTGGCCCCAG +
Preference number: 6 (lower is better)
Translates to: GGRAQHKVEVHI*DHNVHGAGWPQ
Trigger: CTGGGGCCAGCCCGCACCGTGTACATTATGATCTCAAATATGCACTTCGACTTTGTGCTGAGCACGGCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp CGTCTTCTTCCTCCTGCACCACGTGCCGGGCGATCTTaGGCCATAGTTTCTTGCGAAGTTCCTCATCCTCCT +
Preference number: 6 (lower is better)
Translates to: RLLPPAPRAGRS*AIVSCEVPHPP
Trigger: AGGAGGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp TTGCCTTGCCCAAGTCAATGCGGAGCAGTGTATCCTTaGCCAGGCTCATGCAGAGCTGATTGCAGGAGACCA +
Preference number: 6 (lower is better)
Translates to: LPCPSQCGAVYP*PGSCRADCRRP
Trigger: TGGTCTCCTGCAATCAGCTCTGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp TGGATAGAGGCCCGGCTGGCAAAGAGCCACTCTTTGTaGCGAGGGCTACTGAGAAAAGTACGGAAACACTCC +
Preference number: 6 (lower is better)
Translates to: WIEARLAKSHSL*RGLLRKVRKHS
Trigger: GGAGTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp ATGGCTGTCTGGACGTCTTCTTCCTCCTGCACCACGTaGCGGGCGATCTTGAGCCATAGTTTCTTGCGAAGT +
Preference number: 6 (lower is better)
Translates to: MAVWTSSSSCTT*RAILSHSFLRS
Trigger: ACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTCCAGACAGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp TCGTGGATAGAGGCCCGGCTGGCAAAGAGCCACTCTTaGTGCCGAGGGCTACTGAGAAAAGTACGGAAACAC +
Preference number: 6 (lower is better)
Translates to: SWIEARLAKSHS*CRGLLRKVRKH
Trigger: GTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CAA 72 bp ACGTCTTCTTCCTCCTGCACCACGTGCCGGGCGATCTaGAGCCATAGTTTCTTGCGAAGTTCCTCATCCTCC +
Preference number: 6 (lower is better)
Translates to: TSSSSCTTCRAI*SHSFLRSSSSS
Trigger: GGAGGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS GCA 72 bp CCTTCTGTCCATTGCGGTTCATGTAAAGGACCTCGGTaGTACTCAGCGCAACCAGCAGATGAGAGCCAGTAT +
Preference number: 6 (lower is better)
Translates to: PSVHCGSCKGPR*YSAQPADESQY
Trigger: ATACTGGCTCTCATCTGCTGGTTGCGCTGAGTAGCACCGAGGTCCTTTACATGAACCGCAATGGACAGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp CTCACTATACCCCAAATTGCTAGGAAACTCACGGAATaGGGGCGGGTGGTCTGTATAGGCAGCAAAGAGTCC +
Preference number: 6 (lower is better)
Translates to: LTIPQIARKLTE*GRVVCIGSKES
Trigger: GGACTCTTTGCTGCCTATACAGACCACCCGCCCCCATTCCGTGAGTTTCCTAGCAATTTGGGGTATAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS CCA 72 bp TGTCCAGGCAATCAGGCCGCTCTCTACAATACTCTTTaGCCAGGTCAAAGCGGTTCATGTCCAAGTAGGTGC +
Preference number: 6 (lower is better)
Translates to: CPGNQAALYNTL*PGQSGSCPSRC
Trigger: GCACCTACTTGGACATGAACCGCTTTGACCTGGCCAAAGAGTATTGTAGAGAGCGGCCTGATTGCCTGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp GGCAGTGGTATGCGACCACCCGTTCATAGTCCTGCATaGTCACTGCAAAATACACCATGTGCTCTGTGTCTC +
Preference number: 6 (lower is better)
Translates to: GSGMRPPVHSPA*SLQNTPCALCL
Trigger: GAGACACAGAGCACATGGTGTATTTTGCAGTGATCATGCAGGACTATGAACGGGTGGTCGCATACCACTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5
CDS TCA 72 bp ACATGTGGCCACAGAGAAACAGGTAAAAGGGTCGGTTaGGCAAAGGAAAGTCACAGGTGGAGCATTTGTCCT +
Preference number: 6 (lower is better)
Translates to: TCGHRETGKRVG*AKESHRWSICP
Trigger: AGGACAAATGCTCCACCTGTGACTTTCCTTTGCTCAACCGACCCTTTTACCTGTTTCTCTGTGGCCACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037280.5