Pregenerated sensors for VPREB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000903Ensembl transcript IDs: ENSMUST00000000926.3, ENSMUST00000121151.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTTTATTTATTTGTTTACACAGGATCTCACAGTTCTCAGGACAGTaGTTGACCCGTCGAGTGTTATTAACTCATTTCACAGAGGAAGGA | + |
|
Preference number: 1 (lower is better) Translates to: ILFICLHRISQFSGQ*LTRRVLLTHFTEEG Trigger: TCCTTCCTCTGTGAAATGAGTTAATAACACTCGACGGGTCAACCACTGTCCTGAGAACTGTGAGATCCTGTGTAAACAAATAAATAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR CCA 90 bp | AGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACAGAAGATGTTCAACCCACTTCCTGGCTGCTGCTaGTACCACGACACCCCAATA | + |
|
Preference number: 4 (lower is better) Translates to: RGGPRSGGRPRRQKMFNPLPGCC*YHDTPI Trigger: TATTGGGGTGTCGTGGTACCAGCAGCAGCCAGGAAG...TGGGTTGAACATCTTCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR TCA 90 bp | GACTTAAGAGAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACAGAATGGTGCAGCTGAGATaGGCGTCTTGGCCTGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: DLREKEEAQGQGADLGDRMVQLR*ASWPGK Trigger: CTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCAT...TCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR TCA 90 bp | AAGCAAGACTTAAGAGAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAATGGTGCAGCTGAGATaGGCGTCTTGGCCTGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KQDLREKEEAQGQGADLGMVQLR*ASWPGK Trigger: CTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCAT...TCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAAGTCTTGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR CCA 90 bp | GAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACAGAAGATGTTCAAGGCTGGGTCAGAGTTaGCTGAAAGAAACCCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: EKEEAQGQGADLGDRRCSRLGQS*LKETRS Trigger: GCTCCGGGTTTCTTTCAGCCAACTCTGACCCAGCCT...TGAACATCTTCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000121151.2 |
||
| CDS-3UTR TCA 90 bp | CAAGACTTAAGAGAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACCCGGAGCAGGTTTCATaGAGAAAGCATGTACCATGG | + |
|
Preference number: 4 (lower is better) Translates to: QDLREKEEAQGQGADLGDPEQVS*RKHVPW Trigger: CCATGGTACATGCTTTCTTCATGAAACCTGCTCCGG...GTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAAGTCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000121151.2 |
||
| CDS-3UTR CCA 90 bp | TCAGGACAGTGGTTGACCCGTCGAGTGTTATTAACTCATTTCACAGAGGAAGGACTTCCTGGCTGCTGCTaGTACCACGACACCCCAATA | + |
|
Preference number: 4 (lower is better) Translates to: SGQWLTRRVLLTHFTEEGLPGCC*YHDTPI Trigger: TATTGGGGTGTCGTGGTACCAGCAGCAGCCAGGAAG...TCCTTCCTCTGTGAAATGAGTTAATAACACTCGACGGGTCAACCACTGTCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR GCA 90 bp | TTAAGAGAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACAGAAGAAGTTGGCTGAAAGACTaGCACAAAGGTTCCTATCAG | + |
|
Preference number: 4 (lower is better) Translates to: LREKEEAQGQGADLGDRRSWLKD*HKGSYQ Trigger: CTGATAGGAACCTTTGTGGCAGTCTTTCAGCCAACT...TCTTCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000926.3 |
||
| CDS-3UTR GCA 90 bp | AAGCAAGACTTAAGAGAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAATAGTGTTCCTCTTCTaGGTAATAGTAGAGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: KQDLREKEEAQGQGADLGIVFLF*VIVEKM Trigger: CATCTTCTCTACTATTACGCAGAAGAGGAACACTAT...TCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAAGTCTTGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS-3UTR GCA 90 bp | TGGTTGACCCGTCGAGTGTTATTAACTCATTTCACAGAGGAAGGAAAGAAAGCAATAGTGTTCCTCTTCTaGGTAATAGTAGAGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: WLTRRVLLTHFTEEGKKAIVFLF*VIVEKM Trigger: CATCTTCTCTACTATTACGCAGAAGAGGAACACTAT...TGCTTTCTTTCCTTCCTCTGTGAAATGAGTTAATAACACTCGACGGGTCAACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS CCA 90 bp | TCATCCTCCGGGAGCACGGGGCTGATGGTGAGGATACAGGCGTTGTaGGCTGCATCCACGGTAGCTGAGAATCTGTCGGGGATGTCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: SSSGSTGLMVRIQAL*AASTVAENLSGMSA Trigger: CGCTGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAGCCCACAACGCCTGTATCCTCACCATCAGCCCCGTGCTCCCGGAGGATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 90 bp | ATATCTCCAGCGGTGGCATGCTGGGAATTGATGGTGCAGCTGAGATaGGCGTCTTGGCCTGGGAAGACTGAGAACGCGTCAGGCTGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: ISPAVACWELMVQLR*ASWPGKTENASGWV Trigger: GACCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCCCAGCATGCCACCGCTGGAGATAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 90 bp | GCTGATGGTGAGGATACAGGCGTTGTGGGCTGCATCCACGGTAGCTaGGAATCTGTCGGGGATGTCAGCGGGCCGATAGTGTTCCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ADGEDTGVVGCIHGS*ESVGDVSGPIVFLF Trigger: GAAGAGGAACACTATCGGCCCGCTGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAGCCCACAACGCCTGTATCCTCACCATCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 90 bp | GGAATTGATGGTGCAGCTGAGATGAGCGTCTTGGCCTGGGAAGACTaGGAACGCGTCAGGCTGGGTCAGAGTTGGCTGAAAGACTGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: GIDGAAEMSVLAWED*ERVRLGQSWLKDCH Trigger: GTGGCAGTCTTTCAGCCAACTCTGACCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000926.3 |
||
| CDS TCA 90 bp | GGAATTGATGGTGCAGCTGAGATGAGCGTCTTGGCCTGGGAAGACTaGGAACGCGTCAGGCTGGGTCAGAGTTGGCTGAAAGAAACCCGG | + |
|
Preference number: 5 (lower is better) Translates to: GIDGAAEMSVLAWED*ERVRLGQSWLKETR Trigger: CCGGGTTTCTTTCAGCCAACTCTGACCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121151.2 |
||
| CDS-3UTR CAA 90 bp | GAAAAAGAGGAGGCCCAAGGTCAGGGGGCAGACCTAGGAGACAGAAGATGTTCACAGGCTGGGTCAGAGTaGGCTGAAAGACTGCCACAA | + |
|
Preference number: 5 (lower is better) Translates to: EKEEAQGQGADLGDRRCSQAGSE*AERLPQ Trigger: TTGTGGCAGTCTTTCAGCCAACTCTGACCCAGCCTG...TGAACATCTTCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000926.3 |
||
| CDS-3UTR CAA 90 bp | TCAGGACAGTGGTTGACCCGTCGAGTGTTATTAACTCATTTCACAGAGGAAGGACAGGCTGGGTCAGAGTaGGCTGAAAGAAACCCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SGQWLTRRVLLTHFTEEGQAGSE*AERNPE Trigger: CTCCGGGTTTCTTTCAGCCAACTCTGACCCAGCCTG...TCCTTCCTCTGTGAAATGAGTTAATAACACTCGACGGGTCAACCACTGTCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121151.2 |
||
| CDS CAA 90 bp | GCATCATCCTCCGGGAGCACGGGGCTGATGGTGAGGATACAGGCGTaGTGGGCTGCATCCACGGTAGCTGAGAATCTGTCGGGGATGTCA | + |
|
Preference number: 6 (lower is better) Translates to: ASSSGSTGLMVRIQA*WAASTVAENLSGMS Trigger: TGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAGCCCACAACGCCTGTATCCTCACCATCAGCCCCGTGCTCCCGGAGGATGATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 72 bp | GAGGATACAGGCGTTGTGGGCTGCATCCACGGTAGCTaGGAATCTGTCGGGGATGTCAGCGGGCCGATAGTG | + |
|
Preference number: 6 (lower is better) Translates to: EDTGVVGCIHGS*ESVGDVSGPIV Trigger: CACTATCGGCCCGCTGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAGCCCACAACGCCTGTATCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 72 bp | GGTGCAGCTGAGATGAGCGTCTTGGCCTGGGAAGACTaGGAACGCGTCAGGCTGGGTCAGAGTTGGCTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: GAAEMSVLAWED*ERVRLGQSWLK Trigger: TTTCAGCCAACTCTGACCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS TCA 72 bp | GCGGTGGCATGCTGGGAATTGATGGTGCAGCTGAGATaGGCGTCTTGGCCTGGGAAGACTGAGAACGCGTCA | + |
|
Preference number: 6 (lower is better) Translates to: AVACWELMVQLR*ASWPGKTENAS Trigger: TGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCCCAGCATGCCACCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS GCA 72 bp | GTCGGGGATGTCAGCGGGCCGATAGTGTTCCTCTTCTaGGTAATAGTAGAGAAGATGGGGAGCACTTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: VGDVSGPIVFLF*VIVEKMGSTSW Trigger: CCAGGAAGTGCTCCCCATCTTCTCTACTATTACGCAGAAGAGGAACACTATCGGCCCGCTGACATCCCCGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000926.3 ENSMUST00000121151.2 |
||
| CDS CAA 72 bp | CTGGGAAGACTGAGAACGCGTCAGGCTGGGTCAGAGTaGGCTGAAAGACTGCCACAAAGGTTCCTATCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LGRLRTRQAGSE*AERLPQRFLSG Trigger: TCCTGATAGGAACCTTTGTGGCAGTCTTTCAGCCAACTCTGACCCAGCCTGACGCGTTCTCAGTCTTCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000926.3 |
||
| CDS TCA 72 bp | TCAGAGTTGGCTGAAAGAAACCCGGAGCAGGTTTCATaGAGAAAGCATGTACCATGGGCCCTATGCTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: SELAERNPEQVS*RKHVPWALCSE Trigger: CTCAGAGCATAGGGCCCATGGTACATGCTTTCTTCATGAAACCTGCTCCGGGTTTCTTTCAGCCAACTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121151.2 |
||