Pregenerated sensors for VPREB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059280Ensembl transcript IDs: ENSMUST00000075371.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGCTTTAATTCTACGATCCAGCCTCCGATGGGGGCTCATAGCAACACCGCAGAACCATCTTCTAGGCTCTaGAAAGCCCCACATTCTACC | + |
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Preference number: 2 (lower is better) Translates to: SFNSTIQPPMGAHSNTAEPSSRL*KAPHST Trigger: GGTAGAATGTGGGGCTTTGCAGAGCCTAGAAGATGG...TTCTGCGGTGTTGCTATGAGCCCCCATCGGAGGCTGGATCGTAGAATTAAAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | CCCTCCTTCCCATACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTCAGGTGGCTGATGCACCATaGGCTGAGGGCCACAACCTG | + |
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Preference number: 4 (lower is better) Translates to: PSFPYQTSRAKQALSSVQVADAP*AEGHNL Trigger: CAGGTTGTGGCCCTCAGCCCATGGTGCATCAGCCAC...CTGAACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | CCCTCCTTCCCATACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTCAGGATACCCCAGGTTCCTaGCCGTATCTTTGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: PSFPYQTSRAKQALSSVQDTPGS*PYLWTR Trigger: CCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATC...CTGAACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR TCA 90 bp | CAACACCGCAGAACAAGGAAAAGCTGCATAACTCCATCTTCTAGGCTCTGCAAAGGTGGGCCAGCAGCATaGGCAGGACAGACGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QHRRTRKSCITPSSRLCKGGPAA*AGQTSR Trigger: CCTGGACGTCTGTCCTGCTCATGCTGCTGGCCCACC...TTTGCAGAGCCTAGAAGATGGAGTTATGCAGCTTTTCCTTGTTCTGCGGTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | ACAGCTTTAATTCTACGATCCAGCCTCCGATGGGGGCTCATAGCAACACCGCAGAGGAGAGGCGGATGGTaGCTCCAAGGGAAGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: TALILRSSLRWGLIATPQRRGGW*LQGKKM Trigger: CATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCT...CTGCGGTGTTGCTATGAGCCCCCATCGGAGGCTGGATCGTAGAATTAAAGCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | CTCCATCTTCTAGGCTCTGCAAAGCCCCACATTCTACCCCTCCTTCCCATACCAATTCTCTTCTTTTCGTaGCTCCGGAGCCCCACAGCG | + |
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Preference number: 4 (lower is better) Translates to: LHLLGSAKPHILPLLPIPILFFS*LRSPTA Trigger: CGCTGTGGGGCTCCGGAGCCACGAAAAGAAGAGAAT...TGGTATGGGAAGGAGGGGTAGAATGTGGGGCTTTGCAGAGCCTAGAAGATGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | TACCCCTCCTTCCCATACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTGGGATATCGGGACCCTaGTGCTTGTCTGAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: YPSFPYQTSRAKQALSSVGISGP*CLSECE Trigger: CTCACACTCAGACAAGCACCAGGGTCCCGATATCCC...AACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CCA 90 bp | TACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTCAGGGTCTGAATGTCTCCTGGCCGTATCTTTaGACCCGGAGAAGCGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: YQTSRAKQALSSVQGLNVSWPYL*TRRSEV Trigger: CACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGA...GACATTCAGACCCTGAACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR TCA 90 bp | TCCTTCCCATACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTCAGGGTAAGGGAAGAAGATGCTaGTGGTGGCTGATGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: SFPYQTSRAKQALSSVQGKGRRC*WWLMHH Trigger: ATGGTGCATCAGCCACCATCAGCATCTTCTTCCCTT...ACCCTGAACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS TCA 90 bp | CAGGGTACAGGAGAGGCGGATGGTGGCTCCAAGGGAAGAAGATGCTaGTGGTGGCTGATGCACCATGGGCTGAGGGCCACAACCTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: QGTGEADGGSKGRRC*WWLMHHGLRATTCE Trigger: CTCACAGGTTGTGGCCCTCAGCCCATGGTGCATCAGCCACCATCAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CCA 90 bp | GCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTGGCCGTATCTTTaGACCCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: AVQRCSDTPGSWPYL*TRRSEVGYRDPGAC Trigger: ACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CAA 90 bp | TTCCCATACCAGACTAGCCGAGCAAAGCAAGCTCTGTCTTCAGTTCAGGGTCTGTTCCTGGCCGTATCTTaGGACCCGGAGAAGCGAGGT | + |
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Preference number: 5 (lower is better) Translates to: FPYQTSRAKQALSSVQGLFLAVS*DPEKRG Trigger: ACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAA...CAGACCCTGAACTGAAGACAGAGCTTGCTTTGCTCGGCTAGTCTGGTATGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CCA 90 bp | AAATGCCAATGTTATGGTCGTTGCTCAGGGTACAGGAGAGGCGGATaGTGGCTCCAAGGGAAGAAGATGCTGATGGTGGCTGATGCACCA | + |
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Preference number: 5 (lower is better) Translates to: KCQCYGRCSGYRRGG*WLQGKKMLMVADAP Trigger: TGGTGCATCAGCCACCATCAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACATTGGCATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS-3UTR CAA 90 bp | AAAACAGCTTTAATTCTACGATCCAGCCTCCGATGGGGGCTCATAGCAACACCGCCAATGTTATGGTCGTaGCTCAGGGTACAGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: KTALILRSSLRWGLIATPPMLWS*LRVQER Trigger: CCTCTCCTGTACCCTGAGCAACGACCATAACATTGG...CGGTGTTGCTATGAGCCCCCATCGGAGGCTGGATCGTAGAATTAAAGCTGTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS TCA 72 bp | GGAGAGGCGGATGGTGGCTCCAAGGGAAGAAGATGCTaGTGGTGGCTGATGCACCATGGGCTGAGGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: GEADGGSKGRRC*WWLMHHGLRAT Trigger: TGTGGCCCTCAGCCCATGGTGCATCAGCCACCATCAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CAA 72 bp | GAGATGCTCAGATACCCCAGGTTCCTGGCCGTATCTTaGGACCCGGAGAAGCGAGGTGGGATATCGGGACCC | + |
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Preference number: 6 (lower is better) Translates to: EMLRYPRFLAVS*DPEKRGGISGP Trigger: GGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CAA 90 bp | TGCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTGGCCGTATCTTaGGACCCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: CSSEMLRYPRFLAVS*DPEKRGGISGPWCL Trigger: CAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CCA 72 bp | AGATGCTCAGATACCCCAGGTTCCTGGCCGTATCTTTaGACCCGGAGAAGCGAGGTGGGATATCGGGACCCT | + |
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Preference number: 6 (lower is better) Translates to: RCSDTPGSWPYL*TRRSEVGYRDP Trigger: AGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CCA 72 bp | GCTGCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTaGCCGTATCTTTGGACCCGGAGAAGCGAGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: AAVQRCSDTPGS*PYLWTRRSEVG Trigger: TCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CAA 72 bp | CCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTGCTaGTCTGAGTGTGAGAAGTATCTCAGCAGGAACCTG | + |
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Preference number: 6 (lower is better) Translates to: PEKRGGISGPWC*SECEKYLSRNL Trigger: CAGGTTCCTGCTGAGATACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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| CDS CCA 72 bp | TGTTATGGTCGTTGCTCAGGGTACAGGAGAGGCGGATaGTGGCTCCAAGGGAAGAAGATGCTGATGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: CYGRCSGYRRGG*WLQGKKMLMVA Trigger: AGCCACCATCAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075371.5 |
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