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Pregenerated sensors for VPREB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059305

Ensembl transcript IDs: ENSMUST00000075017.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp ACAGCTTTAATTCTACAATCCAGCCTCCAATGGGGGCTCATAGCAACACCGCAGGATAGGCCAGCAGCATaGGCAGGACAGACGTCCAGG +
Preference number: 4 (lower is better)
Translates to: TALILQSSLQWGLIATPQDRPAA*AGQTSR
Trigger: CCTGGACGTCTGTCCTGCTCATGCTGCTGGCCTATC...CTGCGGTGTTGCTATGAGCCCCCATTGGAGGCTGGATTGTAGAATTAAAGCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS-3UTR CCA 90 bp CCCTCCTTCCCATACCAGACTAGCCGAGCAAAGCAAACTCTGTCTTCAGTTCAGTCCTGGTCGTATCTTTaGACCCGGAGAAGCGAGGTG +
Preference number: 4 (lower is better)
Translates to: PSFPYQTSRAKQTLSSVQSWSYL*TRRSEV
Trigger: CACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGA...CTGAACTGAAGACAGAGTTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS-3UTR GCA 90 bp TCCTTCCCATACCAGACTAGCCGAGCAAAGCAAACTCTGTCTTCAGTTCAGGGTAGTAAATGCTGTAAATaGCAATGTTATGGTCGTTGC +
Preference number: 4 (lower is better)
Translates to: SFPYQTSRAKQTLSSVQGSKCCK*QCYGRC
Trigger: GCAACGACCATAACATTGGCATTTACAGCATTTACT...ACCCTGAACTGAAGACAGAGTTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS-3UTR GCA 90 bp AGCTTTAATTCTACAATCCAGCCTCCAATGGGGGCTCATAGCAACACCGCAGAAGCTGGTACCAGTAAATaGTGTAAATGCCAATGTTAT +
Preference number: 4 (lower is better)
Translates to: SFNSTIQPPMGAHSNTAEAGTSK*CKCQCY
Trigger: ATAACATTGGCATTTACAGCATTTACTGGTACCAGC...TTCTGCGGTGTTGCTATGAGCCCCCATTGGAGGCTGGATTGTAGAATTAAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 90 bp GCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTGGTCGTATCTTTaGACCCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTGCTTGT +
Preference number: 5 (lower is better)
Translates to: AVQRCSDTPGSWSYL*TRRSEVGYRDPGAC
Trigger: ACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 90 bp TGCCAATGTTATGGTCGTTGCTCAGGGTACAGGAGAGGCGGATGGTaGCTCCAAGGGAAGAAGATGCTAATGGTGGCTGATGCACCATGG +
Preference number: 5 (lower is better)
Translates to: CQCYGRCSGYRRGGW*LQGKKMLMVADAPW
Trigger: CCATGGTGCATCAGCCACCATTAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACATTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS-3UTR CAA 90 bp TACCCCTCCTTCCCATACCAGACTAGCCGAGCAAAGCAAACTCTGTCTTCAGTTTTCCTGGTCGTATCTTaGGACCCGGAGAAGCGAGGT +
Preference number: 5 (lower is better)
Translates to: YPSFPYQTSRAKQTLSSVFLVVS*DPEKRG
Trigger: ACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAA...AACTGAAGACAGAGTTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CAA 72 bp GAGATGCTCAGATACCCCAGGTTCCTGGTCGTATCTTaGGACCCGGAGAAGCGAGGTGGGATATCGGGACCC +
Preference number: 6 (lower is better)
Translates to: EMLRYPRFLVVS*DPEKRGGISGP
Trigger: GGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CAA 90 bp TGCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTGGTCGTATCTTaGGACCCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTGCTTG +
Preference number: 6 (lower is better)
Translates to: CSSEMLRYPRFLVVS*DPEKRGGISGPWCL
Trigger: CAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS GCA 72 bp GACCCGGAGAAGCGAGGTGGGATATCGGGACCCTGGTaGTTGTCTGAGTGTGAGAAGTATCTCAGCAGGAAC +
Preference number: 6 (lower is better)
Translates to: DPEKRGGISGPW*LSECEKYLSRN
Trigger: GTTCCTGCTGAGATACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 72 bp TTGGACCCGGAGAAGCGAGGTGGGATATCGGGACCCTaGTGCTTGTCTGAGTGTGAGAAGTATCTCAGCAGG +
Preference number: 6 (lower is better)
Translates to: LDPEKRGGISGP*CLSECEKYLSR
Trigger: CCTGCTGAGATACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 72 bp AGATGCTCAGATACCCCAGGTTCCTGGTCGTATCTTTaGACCCGGAGAAGCGAGGTGGGATATCGGGACCCT +
Preference number: 6 (lower is better)
Translates to: RCSDTPGSWSYL*TRRSEVGYRDP
Trigger: AGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 72 bp GCTGCAGTTCAGAGATGCTCAGATACCCCAGGTTCCTaGTCGTATCTTTGGACCCGGAGAAGCGAGGTGGGA +
Preference number: 6 (lower is better)
Translates to: AAVQRCSDTPGS*SYLWTRRSEVG
Trigger: TCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS CCA 72 bp TATGGTCGTTGCTCAGGGTACAGGAGAGGCGGATGGTaGCTCCAAGGGAAGAAGATGCTAATGGTGGCTGAT +
Preference number: 6 (lower is better)
Translates to: YGRCSGYRRGGW*LQGKKMLMVAD
Trigger: ATCAGCCACCATTAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5
CDS GCA 72 bp ACCAGTAAATGCTGTAAATGCCAATGTTATGGTCGTTaGTCAGGGTACAGGAGAGGCGGATGGTGGCTCCAA +
Preference number: 6 (lower is better)
Translates to: TSKCCKCQCYGR*SGYRRGGWWLQ
Trigger: TTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACATTGGCATTTACAGCATTTACTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075017.5