Pregenerated sensors for VNN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020010Ensembl transcript IDs: ENSMUST00000020190.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCTGCAGCTCCTTGTTCTaGCTCTTAGAGCCCCGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LSLALPFQQLTSYLLMEPCSSLF*LLEPRS Trigger: AGAGCGGGGCTCTAAGAGCAAGAACAAGGAGCTGCA...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| 3UTR CAA 72 bp | CTTACATCGTATCTCCTAATGGAACCCTGCAGCTCCTaGTTCTTGCTCTTAGAGCCCCGCTCTCTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LTSYLLMEPCSS*FLLLEPRSLPG Trigger: GCCTGGCAGAGAGCGGGGCTCTAAGAGCAAGAACAAGGAGCTGCAGGGTTCCATTAGGAGATACGATGTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCTTGCAGCAAGCACGTTaGCCCCCATGGCTCTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPLQQAR*PPWLWP Trigger: GGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAA...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCCCGAGACCTCAGCTCTaGAAGCAGCAGTTGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPPRPQL*KQQLAT Trigger: AGTGGCCAACTGCTGCTTTCAGAGCTGAGGTCTCGG...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR GCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACGTCACAATGATATGTaGACCCTGTCTGGCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMERHNDM*TLSGCQ Trigger: CTGGCAGCCAGACAGGGTGCACATATCATTGTGACG...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCCTGTCATATGCATGCTaGTGTTGTGGGTGTTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPLSYAC*CCGCLQ Trigger: CTGCAAACACCCACAACACCAGCATGCATATGACAG...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAATGGCCTTCCACTGTATaGAGTCCATCAAAGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEWPSTV*SPSKAP Trigger: GGGTGCCTTTGATGGACTCCATACAGTGGAAGGCCA...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCAATAAAAGTGTCCATTaGACCCACAGCCTGGGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPNKSVH*THSLGK Trigger: TTTGCCCAGGCTGTGGGTTCAATGGACACTTTTATT...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTACTTCTGGCGTCACAATaGTATGTGCACCCTGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: YCFLSLALPFQQLTSYLLLLASQ*YVHPVW Trigger: CCAGACAGGGTGCACATATCATTGTGACGCCAGAAG...TAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR GCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCGGCTGCCAGCTTGATTaGACTCTCCAAAATGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPGCQLD*TLQNVY Trigger: ATAGACATTTTGGAGAGTGCAATCAAGCTGGCAGCC...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAATCTGAAAGCAGCAGTTaGCCACTCTCTGTCTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMESESSS*PLSVSM Trigger: CATGGAGACAGAGAGTGGCCAACTGCTGCTTTCAGA...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAGTCTGGCTGCCAGCTTaGTTGCACTCTCCAAAATGT | + |
|
Preference number: 4 (lower is better) Translates to: YCFLSLALPFQQLTSYLLVWLPA*LHSPKC Trigger: ACATTTTGGAGAGTGCAATCAAGCTGGCAGCCAGAC...TAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCCCATCCGGGGGACAATaGGGATCAGTAGCATTGCAT | + |
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Preference number: 4 (lower is better) Translates to: YFIVSSHLLCLFSSLHRIPSGGQ*GSVALH Trigger: ATGCAATGCTACTGATCCTCATTGTCCCCCGGATGG...GATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAAATTGAACCCACAGCCTaGGCAAAGAAGACAAAACTC | + |
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Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEIEPTA*AKKTKL Trigger: GAGTTTTGTCTTCTTTGCCCAGGCTGTGGGTTCAAT...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCCCAGCTCTGAATCTTTaGGGAAATCAAACTGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: LSLALPFQQLTSYLLMEPPALNL*GNQTES Trigger: AGATTCAGTTTGATTTCCCCAAAGATTCAGAGCTGG...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACACAACCACCACAGCTaGGTCATAAGAGAAAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEHNHHS*VIRENV Trigger: GACATTTTCTCTTATGACCCAGCTGTGGTGGTTGTG...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATGCATGCTGGTGTTGTaGGTGTTTGCAGCAAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: FTLLFPLTCFAFSAAYIVCMLVL*VFAAST Trigger: CGTGCTTGCTGCAAACACCCACAACACCAGCATGCA...TACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACACAAGTTCTCGAGTTaGTGGTTTGACACTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEHKFSS*WFDTSA Trigger: TGCTGAAGTGTCAAACCACCAACTCGAGAACTTGTG...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAAAAACTCACTGCCCATTaGGGAAAATGTAATGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEKLTAH*GKCNEA Trigger: GGCTTCATTACATTTTCCTCAATGGGCAGTGAGTTT...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAAAAGGTCACCAGCTCTaGATCTTTGGGGAAATCAAA | + |
|
Preference number: 4 (lower is better) Translates to: YCFLSLALPFQQLTSYLLKGHQL*IFGEIK Trigger: TTTGATTTCCCCAAAGATTCAGAGCTGGTGACCTTT...TAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAAAAATGTCAAAGCAAGTaGAGATGCCAAACTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: FLSLALPFQQLTSYLLMEKCQSK*RCQTSQ Trigger: TTGGGAAGTTTGGCATCTTCACTTGCTTTGACATTT...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR GCA 90 bp | TTTACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCCCTGTCATATGCATaGTGGTGTTGTGGGTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: FTLLFPLTCFAFSAAYIVSLSYA*WCCGCL Trigger: CAAACACCCACAACACCAGCATGCATATGACAGGGA...TACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TTTACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTAAAATGGTCTCCCTGGTaGAGATCCAACCATAGATTC | + |
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Preference number: 4 (lower is better) Translates to: FTLLFPLTCFAFSAAYIVKWSPW*RSNHRF Trigger: GAATCTATGGTTGGATCTTCACCAGGGAGACCATTT...TACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTAAAAATAAATCTTTCCTaGGAAGTCTGCCTGCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: FTLLFPLTCFAFSAAYIVKINLS*EVCLPR Trigger: TCGGGGCAGGCAGACTTCCCAGGAAAGATTTATTTT...TACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTATTGGGGAAATCAAACTaGATCTCTGGTTCAAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: YCFLSLALPFQQLTSYLLLGKSN*ISGSKR Trigger: TCTTTTTGAACCAGAGATTCAGTTTGATTTCCCCAA...TAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 90 bp | CTGTCATATGCATGCTGGTGTTGTGGGTGTTTGCAGCAAGCACGTTaGCCCCCATGGCTCTGGCCCACACCGAATGGAATGGAACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LSYACWCCGCLQQAR*PPWLWPTPNGMELL Trigger: CAGCAGTTCCATTCCATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCATATGACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS GCA 90 bp | GTAGATTCCACTCCCTGTCATATGCATGCTGGTGTTGTGGGTGTTTaGAGCAAGCACGTTGACCCCCATGGCTCTGGCCCACACCGAATG | + |
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Preference number: 5 (lower is better) Translates to: VDSTPCHMHAGVVGV*SKHVDPHGSGPHRM Trigger: CATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCATATGACAGGGAGTGGAATCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 90 bp | AAATTCGTCAAAATAAATCTTTCCTGGGAAGTCTGCCTGCCCCGATaGGAACGGCTTCACAGTCCTGGCATAAGCGCTCCAGTTAACCTC | + |
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Preference number: 5 (lower is better) Translates to: KFVKINLSWEVCLPR*ERLHSPGISAPVNL Trigger: GAGGTTAACTGGAGCGCTTATGCCAGGACTGTGAAGCCGTTCTCATCGGGGCAGGCAGACTTCCCAGGAAAGATTTATTTTGACGAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CAA 90 bp | CTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAACCCACAGCACAGGTCCTTTaGGCAAACTGTGTAATTGCC | + |
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Preference number: 5 (lower is better) Translates to: LSLALPFQQLTSYLLMEPTAQVL*ANCVIA Trigger: GGCAATTACACAGTTTGCCAAAAGGACCTGTGCTGT...GGGTTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CAA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAAATATGCATGCTGGTGTaGTGGGTGTTTGCAGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: FLSLALPFQQLTSYLLMEICMLV*WVFAAS Trigger: GCTTGCTGCAAACACCCACAACACCAGCATGCATAT...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CAA 90 bp | TTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCTCCTAATGGAAAAAATGTCTATGTTCTaGTTTATCAGGAGCAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: FLSLALPFQQLTSYLLMEKMSMF*FIRSKA Trigger: GGCTTTGCTCCTGATAAACAAGAACATAGACATTTT...TTCCATTAGGAGATACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAA 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS-3UTR CAA 90 bp | TTTACTTTATTGTTTCCTCTCACTTGCTTTGCCTTTTCAGCAGCTTACATCGTATCAGACGTCCATCTCTaGAGACTTCATAATATCTTT | + |
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Preference number: 5 (lower is better) Translates to: FTLLFPLTCFAFSAAYIVSDVHL*RLHNIF Trigger: AAAGATATTATGAAGTCTCAAGAGATGGACGTCTGA...TACGATGTAAGCTGCTGAAAAGGCAAAGCAAGTGAGAGGAAACAATAAAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS GCA 72 bp | CTTCACAGTCCTGGCATAAGCGCTCCAGTTAACCTCTaGAGGGGTGGCGTGCTGGCGAGGCCGAGACCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LHSPGISAPVNL*RGGVLARPRPQ Trigger: CTGAGGTCTCGGCCTCGCCAGCACGCCACCCCTGCAGAGGTTAACTGGAGCGCTTATGCCAGGACTGTGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 72 bp | CATGGCTCTGGCCCACACCGAATGGAATGGAACTGCTaGAAGCAGGGGCAGGGTGTTGTACCACGCCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: HGSGPHRMEWNC*KQGQGVVPRRG Trigger: CCCACGGCGTGGTACAACACCCTGCCCCTGCTTTCAGCAGTTCCATTCCATTCGGTGTGGGCCAGAGCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CCA 72 bp | AGCACGTTGACCCCCATGGCTCTGGCCCACACCGAATaGAATGGAACTGCTGAAAGCAGGGGCAGGGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: STLTPMALAHTE*NGTAESRGRVL Trigger: CAACACCCTGCCCCTGCTTTCAGCAGTTCCATTCCATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 72 bp | GCATGCTGGTGTTGTGGGTGTTTGCAGCAAGCACGTTaGCCCCCATGGCTCTGGCCCACACCGAATGGAATG | + |
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Preference number: 6 (lower is better) Translates to: ACWCCGCLQQAR*PPWLWPTPNGM Trigger: CATTCCATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS GCA 72 bp | ACTCCCTGTCATATGCATGCTGGTGTTGTGGGTGTTTaGAGCAAGCACGTTGACCCCCATGGCTCTGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: TPCHMHAGVVGV*SKHVDPHGSGP Trigger: TGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCATATGACAGGGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 72 bp | TGCATGCTGGTGTTGTGGGTGTTTGCAGCAAGCACGTaGACCCCCATGGCTCTGGCCCACACCGAATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: CMLVLWVFAAST*TPMALAHTEWN Trigger: ATTCCATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 90 bp | CCTGTCATATGCATGCTGGTGTTGTGGGTGTTTGCAGCAAGCACGTaGACCCCCATGGCTCTGGCCCACACCGAATGGAATGGAACTGCT | + |
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Preference number: 6 (lower is better) Translates to: PVICMLVLWVFAAST*TPMALAHTEWNGTA Trigger: AGCAGTTCCATTCCATTCGGTGTGGGCCAGAGCCATGGGGGTCAACGTGCTTGCTGCAAACACCCACAACACCAGCATGCATATGACAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CCA 72 bp | GTTCTCCTTGGCAAGGCAGCTCAGTCTCTCCTGTACTaGTGTGTAGCCAAACCTCCTAGGGTCTCTACAGGG | + |
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Preference number: 6 (lower is better) Translates to: VLLGKAAQSLLY*CVAKPPRVSTG Trigger: CCCTGTAGAGACCCTAGGAGGTTTGGCTACACACCAGTACAGGAGAGACTGAGCTGCCTTGCCAAGGAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 72 bp | AAAATAAATCTTTCCTGGGAAGTCTGCCTGCCCCGATaGGAACGGCTTCACAGTCCTGGCATAAGCGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: KINLSWEVCLPR*ERLHSPGISAP Trigger: TGGAGCGCTTATGCCAGGACTGTGAAGCCGTTCTCATCGGGGCAGGCAGACTTCCCAGGAAAGATTTATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 72 bp | AGGGGCTCCACCTCGACTCCTCAGACGTCCATCTCTTaGGACTTCATAATATCTTTCCAGGGCAAGTTGACT | + |
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Preference number: 6 (lower is better) Translates to: RGSTSTPQTSIS*DFIISFQGKLT Trigger: AGTCAACTTGCCCTGGAAAGATATTATGAAGTCTCAAGAGATGGACGTCTGAGGAGTCGAGGTGGAGCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 72 bp | AAGGGGCTCCACCTCGACTCCTCAGACGTCCATCTCTaGAGACTTCATAATATCTTTCCAGGGCAAGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: KGLHLDSSDVHL*RLHNIFPGQVD Trigger: GTCAACTTGCCCTGGAAAGATATTATGAAGTCTCAAGAGATGGACGTCTGAGGAGTCGAGGTGGAGCCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 90 bp | TCGGCTCTCAGACATCTTGTAAGTCAGGTGACAGCACAGGTCCTTTaGGCAAACTGTGTAATTGCCAGCACTTCCTGTAAGCTTGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: SALRHLVSQVTAQVL*ANCVIASTSCKLGE Trigger: TTCACCAAGCTTACAGGAAGTGCTGGCAATTACACAGTTTGCCAAAAGGACCTGTGCTGTCACCTGACTTACAAGATGTCTGAGAGCCGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CCA 72 bp | ACTGTCGACCTGGGTGTCCTTCACAACCACCACAGCTaGGTCATAAGAGAAAATGTCAAAGCAAGTGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: TVDLGVLHNHHS*VIRENVKASED Trigger: ATCTTCACTTGCTTTGACATTTTCTCTTATGACCCAGCTGTGGTGGTTGTGAAGGACACCCAGGTCGACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS TCA 72 bp | AAACTTCCCAAACGGGGTGTCAAAGGTCACCAGCTCTaGATCTTTGGGGAAATCAAACTGAATCTCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: KLPKRGVKGHQL*IFGEIKLNLWF Trigger: GAACCAGAGATTCAGTTTGATTTCCCCAAAGATTCAGAGCTGGTGACCTTTGACACCCCGTTTGGGAAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 72 bp | AGACATCTTGTAAGTCAGGTGACAGCACAGGTCCTTTaGGCAAACTGTGTAATTGCCAGCACTTCCTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: RHLVSQVTAQVL*ANCVIASTSCK Trigger: CTTACAGGAAGTGCTGGCAATTACACAGTTTGCCAAAAGGACCTGTGCTGTCACCTGACTTACAAGATGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 90 bp | TGTCTGGCTGCCAGCTTGATTGCACTCTCCAAAATGTCTATGTTCTaGTTTATCAGGAGCAAAGCCTCTTCAGTGGAAACAGGACTTTCA | + |
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Preference number: 6 (lower is better) Translates to: CLAASLIALSKMSMF*FIRSKASSVETGLS Trigger: TGAAAGTCCTGTTTCCACTGAAGAGGCTTTGCTCCTGATAAACAAGAACATAGACATTTTGGAGAGTGCAATCAAGCTGGCAGCCAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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| CDS CAA 72 bp | GCCAGCTTGATTGCACTCTCCAAAATGTCTATGTTCTaGTTTATCAGGAGCAAAGCCTCTTCAGTGGAAACA | + |
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Preference number: 6 (lower is better) Translates to: ASLIALSKMSMF*FIRSKASSVET Trigger: TGTTTCCACTGAAGAGGCTTTGCTCCTGATAAACAAGAACATAGACATTTTGGAGAGTGCAATCAAGCTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020190.8 |
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