Pregenerated sensors for VNN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037440Ensembl transcript IDs: ENSMUST00000041416.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCTAATGATGCCTCTTATGTCTTCATTGCCAAAGACACCAAGGCAGTCACGTTCCATGCGACCTTTACTTaGCCCTCCATCTCGTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: ANDASYVFIAKDTKAVTFHATFT*PSISFQ Trigger: TTGGAACGAGATGGAGGGCCAAGTAAAGGTCGCATG...GAACGTGACTGCCTTGGTGTCTTTGGCAATGAAGACATAAGAGGCATCATTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGTCTTTGTCCTGATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCCACGTTCTGAGGTTGTaGGAACTGGGACTTGAACTG | + |
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Preference number: 2 (lower is better) Translates to: QVFVLISSEEISHIELKSHVLRL*ELGLEL Trigger: CAGTTCAAGTCCCAGTTCCCACAACCTCAGAACGTG...GGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAATCAGGACAAAGACTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGTCTTTGTCCTGATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCGTGGGAACTGGGACTTaGACTGAAGAATTAAAACTA | + |
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Preference number: 2 (lower is better) Translates to: QVFVLISSEEISHIELKSVGTGT*TEELKL Trigger: TAGTTTTAATTCTTCAGTTCAAGTCCCAGTTCCCAC...GGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAATCAGGACAAAGACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR GCA 72 bp | TGTACATATGTTTCTCTAAAGAAGAGGCACTTTATTTaGTTACACCCGAGTCCACTGTTGACAAACAGTTAT | + |
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Preference number: 3 (lower is better) Translates to: CTYVSLKKRHFI*LHPSPLLTNSY Trigger: ATAACTGTTTGTCAACAGTGGACTCGGGTGTAAGCAAATAAAGTGCCTCTTCTTTAGAGAAACATATGTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR CCA 72 bp | TTATTTCTTCTGAATAAAACACATGCGACCTTTACTTaGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: LFLLNKTHATFT*PSISFQCSKFY Trigger: ATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAGTAAAGGTCGCATGTGTTTTATTCAGAAGAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | GCTAATGATGCCTCTTATGTCTTCATTGCCAAAGACACCAAGGCAGTCACGTTCGCCAGAGCCTCACTGTaGGACACTGGCAACAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: ANDASYVFIAKDTKAVTFARASL*DTGNRV Trigger: CACCCTGTTGCCAGTGTCTCACAGTGAGGCTCTGGC...GAACGTGACTGCCTTGGTGTCTTTGGCAATGAAGACATAAGAGGCATCATTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | CTTGGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTATTAATTTTCCTGAAATGTCTTGGCCAAGCAGCTaGGTCTCTCCTGCACCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LGPPSRSNAQSFINFPEMSWPSS*VSPAPG Trigger: CCCCGGTGCAGGAGAGACTCAGCTGCTTGGCCAAGA...CATTTCAGGAAAATTAATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | CTAAAGAAGAGGCACTTTATTTGCTTACACCCGAGTCCACTGTTGACAAACAGTCCCCAGGTGCGAGCTTaGCCTCACTCAGCAACACTT | + |
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Preference number: 4 (lower is better) Translates to: LKKRHFICLHPSPLLTNSPQVRA*PHSATL Trigger: AAGTGTTGCTGAGTGAGGTCAAGCTCGCACCTGGGG...ACTGTTTGTCAACAGTGGACTCGGGTGTAAGCAAATAAAGTGCCTCTTCTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | CTTGGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTATTAATTTTCCTGAAATGCTGAAACTCCCCAGGTaGGAGCTTGACCTCACTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LGPPSRSNAQSFINFPEMLKLPR*ELDLTQ Trigger: CTGAGTGAGGTCAAGCTCGCACCTGGGGAGTTTCAG...CATTTCAGGAAAATTAATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | GCTAATGATGCCTCTTATGTCTTCATTGCCAAAGACACCAAGGCAGTCACGTTCAGAAGGTCCAGATTCTaGTTCATTAATGCCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: ANDASYVFIAKDTKAVTFRRSRF*FINARA Trigger: GGCTCTGGCATTAATGAACCAGAATCTGGACCTTCT...GAACGTGACTGCCTTGGTGTCTTTGGCAATGAAGACATAAGAGGCATCATTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | CTAAAGAAGAGGCACTTTATTTGCTTACACCCGAGTCCACTGTTGACAAACAGTGGCATAAACCTCATCTaGTCGCTTCTCAGACATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LKKRHFICLHPSPLLTNSGINLI*SLLRHL Trigger: CAGATGTCTGAGAAGCGAGCAGATGAGGTTTATGCC...ACTGTTTGTCAACAGTGGACTCGGGTGTAAGCAAATAAAGTGCCTCTTCTTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCATGCCCTTCCACGGTGTaGAGCCCATCAAAGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SHIELKSMLMMPLMSSLPCPSTV*SPSKAP Trigger: TGGAGCCTTTGATGGGCTGCACACCGTGGAAGGGCA...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR CAA 72 bp | CATGACCATCTTTTCCTGTGTTCACAAGGGCTTCACTaGATGCAAGTCTTTGTCCTGATTTCTTCTGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: HDHLFLCSQGLH*MQVFVLISSEE Trigger: CTCCTCAGAAGAAATCAGGACAAAGACTTGCATCAAGTGAAGCCCTTGTGAACACAGGAAAAGATGGTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | CAAGTCTTTGTCCTGATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCGGGTGGGATTTCAGCTaGGCGAAGAGGAGTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QVFVLISSEEISHIELKSGWDFS*AKRSFP Trigger: AGGAAAACTCCTCTTCGCTCAGCTGAAATCCCACCC...GGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAATCAGGACAAAGACTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | CTTGGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTATTAATTTTCCTGAAATGGTGTGCTATGAAGTCTaGGGAAGCATTGGATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: LGPPSRSNAQSFINFPEMVCYEV*GSIGCP Trigger: TGGGCATCCAATGCTTCCTCAGACTTCATAGCACAC...CATTTCAGGAAAATTAATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | CAAGTCTTTGTCCTGATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCCTCACTGTGAGACACTaGCAACAGGGTGTCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: QVFVLISSEEISHIELKSLTVRH*QQGVLR Trigger: CCTAAGGACACCCTGTTGCCAGTGTCTCACAGTGAG...GGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAATCAGGACAAAGACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | CTAAAGAAGAGGCACTTTATTTGCTTACACCCGAGTCCACTGTTGACAAACAGTGCAACCAGTTTACCCTaGGAATCAAACACCACATCA | + |
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Preference number: 4 (lower is better) Translates to: LKKRHFICLHPSPLLTNSATSLP*ESNTTS Trigger: TGATGTGGTGTTTGATTCCCAGGGTAAACTGGTTGC...ACTGTTTGTCAACAGTGGACTCGGGTGTAAGCAAATAAAGTGCCTCTTCTTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCATCAGCGAGTGTGCTATaGAGTCTGAGGAAGCATTGG | + |
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Preference number: 4 (lower is better) Translates to: SHIELKSMLMMPLMSSLPSASVL*SLRKHW Trigger: CCAATGCTTCCTCAGACTTCATAGCACACTCGCTGA...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAAGTCTGAGGAAGCATTaGATGCCCAGTCCTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SHIELKSMLMMPLMSSLPSLRKH*MPSPSH Trigger: ATGGGAAGGACTGGGCATCCAATGCTTCCTCAGACT...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | CATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAAAGGTGGAATTCAATGGCTaGCAAATGAGGAAGGACGTC | + |
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Preference number: 4 (lower is better) Translates to: HIELKSMLMMPLMSSLPKVEFNG*QMRKDV Trigger: GACGTCCTTCCTCATTTGGCAGCCATTGAATTCCAC...CTTTGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | ATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCATGCTAATGATGCCTACATCAGTGTTGTACTaGAATCTGCCGTCAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: ISSEEISHIELKSMLMMPTSVLY*NLPSGG Trigger: TCCACCTGACGGCAGATTCCAGTACAACACTGATGT...AGGCATCATTAGCATGGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | ATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCATGCTAATGATGCCTAACGCACACCGTATATaGCATCTTCTGGAGTCACAA | + |
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Preference number: 4 (lower is better) Translates to: ISSEEISHIELKSMLMMPNAHRI*HLLESQ Trigger: TTGTGACTCCAGAAGATGGCATATACGGTGTGCGTT...AGGCATCATTAGCATGGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| 3UTR CAA 72 bp | GTGTACATATGTTTCTCTAAAGAAGAGGCACTTTATTaGCTTACACCCGAGTCCACTGTTGACAAACAGTTA | + |
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Preference number: 4 (lower is better) Translates to: VYICFSKEEALY*LTPESTVDKQL Trigger: TAACTGTTTGTCAACAGTGGACTCGGGTGTAAGCAAATAAAGTGCCTCTTCTTTAGAGAAACATATGTACAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAGAATATCGAAACAGGTaGAGACGCCAAACTTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SHIELKSMLMMPLMSSLPEYRNR*RRQTFQ Trigger: TTGGAAAGTTTGGCGTCTTCACCTGTTTCGATATTC...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CCA 90 bp | CATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAAAGGTATATGCCATCTTCTaGAGTCACAATAATGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: HIELKSMLMMPLMSSLPKVYAIF*SHNNVR Trigger: GCGCACATTATTGTGACTCCAGAAGATGGCATATAC...CTTTGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR TCA 90 bp | CAAGTCTTTGTCCTGATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCACTGATCTTCTCCCATaGAAATGTTTTGCTTATGGT | + |
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Preference number: 4 (lower is better) Translates to: QVFVLISSEEISHIELKSTDLLP*KCFAYG Trigger: ACCATAAGCAAAACATTTTCATGGGAGAAGATCAGT...GGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAATCAGGACAAAGACTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR GCA 90 bp | ATTTCTTCTGAGGAGATCAGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCCCATGAAAATGTTTTaGTTATGGTATCTCGCAACC | + |
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Preference number: 4 (lower is better) Translates to: ISSEEISHIELKSMLMMPPMKMF*LWYLAT Trigger: GGTTGCGAGATACCATAAGCAAAACATTTTCATGGG...AGGCATCATTAGCATGGACTTTAATTCAATATGACTGATCTCCTCAGAAGAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 90 bp | CCCGAGGTTGGCTTCAGGCTAACCAGGCGCCCATCACTTGACACCTaGAACTCCCCAGGTGCGAGCTTGACCTCACTCAGCAACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: PEVGFRLTRRPSLDT*NSPGASLTSLSNTS Trigger: TGAAGTGTTGCTGAGTGAGGTCAAGCTCGCACCTGGGGAGTTTCAGGTGTCAAGTGATGGGCGCCTGGTTAGCCTGAAGCCAACCTCGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 90 bp | CCAGGCGCCCATCACTTGACACCTGAAACTCCCCAGGTGCGAGCTTaGCCTCACTCAGCAACACTTCAGGGAAGACATACCGGGTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: PGAHHLTPETPQVRA*PHSATLQGRHTGFQ Trigger: TTGGAACCCGGTATGTCTTCCCTGAAGTGTTGCTGAGTGAGGTCAAGCTCGCACCTGGGGAGTTTCAGGTGTCAAGTGATGGGCGCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 90 bp | TCCAGAAGGTCCAGATTCTGGTTCATTAATGCCAGAGCCTCACTGTaGGACACTGGCAACAGGGTGTCCTTAGGCAGGATCACAGCATGC | + |
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Preference number: 5 (lower is better) Translates to: SRRSRFWFINARASL*DTGNRVSLGRITAC Trigger: GCATGCTGTGATCCTGCCTAAGGACACCCTGTTGCCAGTGTCTCACAGTGAGGCTCTGGCATTAATGAACCAGAATCTGGACCTTCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGCCTCTTATGTCTTCATTGCCAAAGACACCAAGGCAGTCACGTTCCCAGGCGCCCATCACTaGACACCTGAAACTCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: ANDASYVFIAKDTKAVTFPGAHH*TPETPQ Trigger: CTGGGGAGTTTCAGGTGTCAAGTGATGGGCGCCTGG...GAACGTGACTGCCTTGGTGTCTTTGGCAATGAAGACATAAGAGGCATCATTAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CCA 90 bp | TTCTACACTGCTAGCATAGGAAGTCCAGTTCACCGGGGAGTGAATTaGGTGGGATTTCAGCTGAGCGAAGAGGAGTTTTCCTTCTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: FYTASIGSPVHRGVN*VGFQLSEEEFSFLG Trigger: ACCCAAGAAGGAAAACTCCTCTTCGCTCAGCTGAAATCCCACCCAATTCACTCCCCGGTGAACTGGACTTCCTATGCTAGCAGTGTAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 90 bp | AGGCGTCACAATCAGCATTATTATCAGCGAGTGTGCTATGAAGTCTaGGGAAGCATTGGATGCCCAGTCCTTCCCATACAACCTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: RRHNQHYYQRVCYEV*GSIGCPVLPIQPPK Trigger: TTTGGGAGGTTGTATGGGAAGGACTGGGCATCCAATGCTTCCTCAGACTTCATAGCACACTCGCTGATAATAATGCTGATTGTGACGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGCCTCTTATGTCTTCATTGCCAAAGACACCAAGGCAGTCACGTTCCCACAGGTGCGTAAATaGGTAGTTTTACATTTTAGC | + |
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Preference number: 5 (lower is better) Translates to: ANDASYVFIAKDTKAVTFPQVRK*VVLHFS Trigger: GCTAAAATGTAAAACTACCAATTTACGCACCTGTGG...GAACGTGACTGCCTTGGTGTCTTTGGCAATGAAGACATAAGAGGCATCATTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | CTTGGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTATTAATTTTCCTGAAATGAACACCACATCAGTGTaGTACTGGAATCTGCCGTCA | + |
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Preference number: 5 (lower is better) Translates to: LGPPSRSNAQSFINFPEMNTTSV*YWNLPS Trigger: TGACGGCAGATTCCAGTACAACACTGATGTGGTGTT...CATTTCAGGAAAATTAATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCATTAGCTGCTAGGAAATaGACCCCCATGCCCATAGCC | + |
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Preference number: 5 (lower is better) Translates to: SHIELKSMLMMPLMSSLPLAARK*TPMPIA Trigger: GGCTATGGGCATGGGGGTCAATTTCCTAGCAGCTAA...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | CATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAAAGAAGTCTGAGGAAGCATaGGATGCCCAGTCCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: HIELKSMLMMPLMSSLPKKSEEA*DAQSFP Trigger: TGGGAAGGACTGGGCATCCAATGCTTCCTCAGACTT...CTTTGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | CATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAAAGGAGGAGTTTTCCTTCTaGGGTCTTCCTGTCGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: HIELKSMLMMPLMSSLPKEEFSF*GLPVVV Trigger: CACTACGACAGGAAGACCCAAGAAGGAAAACTCCTC...CTTTGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | AGTCATATTGAATTAAAGTCCATGCTAATGATGCCTCTTATGTCTTCATTGCCAATTCCTGGGTTTTGGTaGGGGTTGATTCTACACTGC | + |
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Preference number: 5 (lower is better) Translates to: SHIELKSMLMMPLMSSLPIPGFW*GLILHC Trigger: GCAGTGTAGAATCAACCCCAACCAAAACCCAGGAAT...TGGCAATGAAGACATAAGAGGCATCATTAGCATGGACTTTAATTCAATATGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS-3UTR CAA 90 bp | CTTGGCCCTCCATCTCGTTCCAATGCTCAAAGTTTTATTAATTTTCCTGAAATGTCCCATGAAAATGTTTaGCTTATGGTATCTCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: LGPPSRSNAQSFINFPEMSHENV*LMVSRN Trigger: GTTGCGAGATACCATAAGCAAAACATTTTCATGGGA...CATTTCAGGAAAATTAATAAAACTTTGAGCATTGGAACGAGATGGAGGGCCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 72 bp | CGAGGTTGGCTTCAGGCTAACCAGGCGCCCATCACTTaGCACCTGAAACTCCCCAGGTGCGAGCTTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: RGWLQANQAPIT*HLKLPRCELDL Trigger: GAGGTCAAGCTCGCACCTGGGGAGTTTCAGGTGTCAAGTGATGGGCGCCTGGTTAGCCTGAAGCCAACCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 72 bp | CATCACTTGACACCTGAAACTCCCCAGGTGCGAGCTTaGCCTCACTCAGCAACACTTCAGGGAAGACATACC | + |
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Preference number: 6 (lower is better) Translates to: HHLTPETPQVRA*PHSATLQGRHT Trigger: GGTATGTCTTCCCTGAAGTGTTGCTGAGTGAGGTCAAGCTCGCACCTGGGGAGTTTCAGGTGTCAAGTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CCA 72 bp | GCTCGTAAACAGCCGCGAGGAAAGTATCCAGCGAACTaGCTTTTAAGACACAGAGGGCAGAAAACGCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: ARKQPRGKYPAN*LLRHRGQKTLQ Trigger: CTGCAGCGTTTTCTGCCCTCTGTGTCTTAAAAGCCAGTTCGCTGGATACTTTCCTCGCGGCTGTTTACGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CCA 72 bp | GCTAGCATAGGAAGTCCAGTTCACCGGGGAGTGAATTaGGTGGGATTTCAGCTGAGCGAAGAGGAGTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: ASIGSPVHRGVN*VGFQLSEEEFS Trigger: GGAAAACTCCTCTTCGCTCAGCTGAAATCCCACCCAATTCACTCCCCGGTGAACTGGACTTCCTATGCTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 72 bp | TCCAGATTCTGGTTCATTAATGCCAGAGCCTCACTGTaGGACACTGGCAACAGGGTGTCCTTAGGCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: SRFWFINARASL*DTGNRVSLGRI Trigger: GATCCTGCCTAAGGACACCCTGTTGCCAGTGTCTCACAGTGAGGCTCTGGCATTAATGAACCAGAATCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CCA 72 bp | AGGGTTATCACAGGGTATCCAGTTTACTTGAGGGTCTaGGATCTCCTCCAGGTATGGGTAGATCGTATCCCT | + |
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Preference number: 6 (lower is better) Translates to: RVITGYPVYLRV*DLLQVWVDRIP Trigger: AGGGATACGATCTACCCATACCTGGAGGAGATCCCAGACCCTCAAGTAAACTGGATACCCTGTGATAACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CCA 72 bp | ACCTGGAATTCTGTCACCAGGGTGACAGCGGGATCATaGAAGAGAATATCGAAACAGGTGAAGACGCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: TWNSVTRVTAGS*KRISKQVKTPN Trigger: GTTTGGCGTCTTCACCTGTTTCGATATTCTCTTCCATGATCCCGCTGTCACCCTGGTGACAGAATTCCAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CAA 90 bp | ATCAGCATTATTATCAGCGAGTGTGCTATGAAGTCTGAGGAAGCATaGGATGCCCAGTCCTTCCCATACAACCTCCCAAAGAGCCCGATG | + |
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Preference number: 6 (lower is better) Translates to: ISIIISECAMKSEEA*DAQSFPYNLPKSPM Trigger: CATCGGGCTCTTTGGGAGGTTGTATGGGAAGGACTGGGCATCCAATGCTTCCTCAGACTTCATAGCACACTCGCTGATAATAATGCTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 72 bp | GCGTCACAATCAGCATTATTATCAGCGAGTGTGCTATaGAGTCTGAGGAAGCATTGGATGCCCAGTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: ASQSALLSASVL*SLRKHWMPSPS Trigger: GGAAGGACTGGGCATCCAATGCTTCCTCAGACTTCATAGCACACTCGCTGATAATAATGCTGATTGTGACGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CAA 72 bp | ATTATCAGCGAGTGTGCTATGAAGTCTGAGGAAGCATaGGATGCCCAGTCCTTCCCATACAACCTCCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: IISECAMKSEEA*DAQSFPYNLPK Trigger: CTTTGGGAGGTTGTATGGGAAGGACTGGGCATCCAATGCTTCCTCAGACTTCATAGCACACTCGCTGATAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CAA 90 bp | AGGCTCCATGGGGACATTGAACTGATCTTCTCCCATGAAAATGTTTaGCTTATGGTATCTCGCAACCAGTTTACCCTGGGAATCAAACAC | + |
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Preference number: 6 (lower is better) Translates to: RLHGDIELIFSHENV*LMVSRNQFTLGIKH Trigger: GTGTTTGATTCCCAGGGTAAACTGGTTGCGAGATACCATAAGCAAAACATTTTCATGGGAGAAGATCAGTTCAATGTCCCCATGGAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS TCA 72 bp | AATCAGCATTATTATCAGCGAGTGTGCTATGAAGTCTaGGGAAGCATTGGATGCCCAGTCCTTCCCATACAA | + |
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Preference number: 6 (lower is better) Translates to: NQHYYQRVCYEV*GSIGCPVLPIQ Trigger: TTGTATGGGAAGGACTGGGCATCCAATGCTTCCTCAGACTTCATAGCACACTCGCTGATAATAATGCTGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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| CDS CAA 72 bp | AAAGCCGTGTCCACTGAACTACCACAGGTGCGTAAATaGGTAGTTTTACATTTTAGCAGGATGCAGATCTGT | + |
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Preference number: 6 (lower is better) Translates to: KAVSTELPQVRK*VVLHFSRMQIC Trigger: ACAGATCTGCATCCTGCTAAAATGTAAAACTACCAATTTACGCACCTGTGGTAGTTCAGTGGACACGGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041416.8 |
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