Pregenerated sensors for VMP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018171Ensembl transcript IDs: ENSMUST00000018315.10, ENSMUST00000143991.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTCAACATCAGTCTGATAAGCTATCCGACAAGGTGGTACAGCCATaGGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: SQHQSDKLSDKVVQP*DVTTTTGGKHEVLR Trigger: CCTGAGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACTGATGTTGACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR GCA 90 bp | CGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATCTCTGGTTTaGTGGGGCTTAATGCCAATTCTAGGAAAGAAAGCTGTTTATTTT | + |
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Preference number: 1 (lower is better) Translates to: RGAQAGFKAKQTSLV*WGLMPILGKKAVYF Trigger: AAAATAAACAGCTTTCTTTCCTAGAATTGGCATTAAGCCCCAGCAAACCAGAGATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CCA 90 bp | GGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATCTCTGGTTTGCTaGGGCTTAATGCCAATTCTAGGAAAGAAAGCTGTTTATTTTCCT | + |
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Preference number: 1 (lower is better) Translates to: GAQAGFKAKQTSLVC*GLMPILGKKAVYFP Trigger: AGGAAAATAAACAGCTTTCTTTCCTAGAATTGGCATTAAGCCCCAGCAAACCAGAGATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTACAGCCATGCGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTTCAGAAGGTTCTGTGTaGCCCTGTGAAGGTATCAGA | + |
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Preference number: 2 (lower is better) Translates to: GGTAMRCHDHDRGQARGASEGSV*PCEGIR Trigger: TCTGATACCTTCACAGGGCCACACAGAACCTTCTGA...AGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CCA 90 bp | AAACACCTTGGAGGTAGCTCTCTCAGGCAATACATAAAAGCCTGGGCAATTCTGGGGGACCTTCCTTCCTaGTTAGAGCCCTCCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: KHLGGSSLRQYIKAWAILGDLPS*LEPSQC Trigger: ACACTGGGAGGGCTCTAACCAGGAAGGAAGGTCCCC...CAGAATTGCCCAGGCTTTTATGTATTGCCTGAGAGAGCTACCTCCAAGGTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR TCA 90 bp | CACCTTGGAGGTAGCTCTCTCAGGCAATACATAAAAGCCTGGGCAATTCTGGTTGAATACGACGTGGATTaGACTGAGGGTGTAGACACC | + |
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Preference number: 2 (lower is better) Translates to: HLGGSSLRQYIKAWAILVEYDVD*TEGVDT Trigger: GGTGTCTACACCCTCAGTTCAATCCACGTCGTATTC...AACCAGAATTGCCCAGGCTTTTATGTATTGCCTGAGAGAGCTACCTCCAAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CCA 90 bp | ATCAGTCTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCAAAAATCAACACAGGTTaGAAACGGGGACCTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: ISLISYPTRWYSHAMSRPKINTG*KRGPSF Trigger: GAAGGAAGGTCCCCGTTTCCAACCTGTGTTGATTTT...TGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CCA 90 bp | ACGACAGGGGGCAAGCACGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATTGTCAGTGTAACATATaGACTAAACTGCTTTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: TTGGKHEVLRQGLKQSKHCQCNI*TKLLSG Trigger: TCCTGAAAGCAGTTTAGTCCATATGTTACACTGACA...ATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCGTGCTTGCCCCCTGTCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CAA 90 bp | GACTACCCCAATTTCCTAGGAAGTTTTCTCTTGATACTGCTGCTGTaGTACCAAGGTATAAGGGCTCCAAGTCTCACAAGACATAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: DYPNFLGSFLLILLL*YQGIRAPSLTRHKD Trigger: GTCCTTATGTCTTGTGAGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAGGAAATTGGGGTAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CAA 90 bp | AGTTATGACTGTGACGACTACCCCAATTTCCTAGGAAGTTTTCTCTaGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: SYDCDDYPNFLGSFL*ILLLLYQGIRAPSL Trigger: GAGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAGGAAATTGGGGTAGTCGTCACAGTCATAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR TCA 90 bp | GTTGCCATGAGATTCAACAGTCAACATCAGTCTGATAAGCTATCCGACAAGGTGTGGCGTACTCATTTGTaGGACACCAACCAGATTTTC | + |
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Preference number: 2 (lower is better) Translates to: VAMRFNSQHQSDKLSDKVWRTHL*DTNQIF Trigger: GAAAATCTGGTTGGTGTCTCACAAATGAGTACGCCA...CACCTTGTCGGATAGCTTATCAGACTGATGTTGACTGTTGAATCTCATGGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR TCA 90 bp | GGAGTACAAACAGCTAAAACTAACATGAACATGAAAAAGCCTTTCTTGCTAGTGTTCTGTGTGGCCCTGTaGAGGTATCAGAAGGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: GVQTAKTNMNMKKPFLLVFCVAL*RYQKAS Trigger: ACTGGCCTTCTGATACCTTCACAGGGCCACACAGAA...CACTAGCAAGAAAGGCTTTTTCATGTTCATGTTAGTTTTAGCTGTTTGTACTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAGTCTTTTGACTGCAAACCATaGTGCTGGGTAATGTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: KFSLDTAAVVPRYKGSKSFDCKP*CWVMFE Trigger: TTCAAACATTACCCAGCATCATGGTTTGCAGTCAAA...AGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR GCA 72 bp | CAGTCTGATAAGCTATCCGACAAGGTGGTACAGCCATaGGATGTCACGACCACGACAGGGGGCAAGCACGAG | + |
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Preference number: 3 (lower is better) Translates to: QSDKLSDKVVQP*DVTTTTGGKHE Trigger: CTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CCA 72 bp | ACAGTCAACATCAGTCTGATAAGCTATCCGACAAGGTaGTACAGCCATGCGATGTCACGACCACGACAGGGG | + |
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Preference number: 3 (lower is better) Translates to: TVNISLISYPTR*YSHAMSRPRQG Trigger: CCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACTGATGTTGACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CAA 90 bp | ACGACAGGGGGCAAGCACGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATCAACAACAAAACACCTaGGAGGTAGCTCTCTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: TTGGKHEVLRQGLKQSKHQQQNT*EVALSG Trigger: GCCTGAGAGAGCTACCTCCAAGGTGTTTTGTTGTTG...ATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCGTGCTTGCCCCCTGTCGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CAA 90 bp | ACGACAGGGGGCAAGCACGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATTCAGAAGGCCAGTTTTaGTTAAGTTTGCAGCAGAAC | + |
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Preference number: 3 (lower is better) Translates to: TTGGKHEVLRQGLKQSKHSEGQF*LSLQQN Trigger: GTTCTGCTGCAAACTTAACAAAAACTGGCCTTCTGA...ATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCGTGCTTGCCCCCTGTCGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CAA 90 bp | CTAGGAAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCACATAAAATGGCCTTTTaGAGGGTGGGAAAGGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: LGSFLLILLLLYQGIRAPHKMAF*RVGKEG Trigger: GCCTTCCTTTCCCACCCTCAAAAAGGCCATTTTATG...TGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR-3UTR CAA 90 bp | CTAGGAAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAAAAATCAACACAGGTaGGAAACGGGGACCTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LGSFLLILLLLYQGIRAPKNQHR*ETGTFL Trigger: AAGGAAGGTCCCCGTTTCCAACCTGTGTTGATTTTT...TGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR TCA 72 bp | CCAAAATGTCAGACAGCCCATCGACTGCTGTTGCCATaGGATTCAACAGTCAACATCAGTCTGATAAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: PKCQTAHRLLLP*DSTVNISLISY Trigger: ATAGCTTATCAGACTGATGTTGACTGTTGAATCTCATGGCAACAGCAGTCGATGGGCTGTCTGACATTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR GCA 72 bp | CCTGGGCAATTCTGGTTTAAGTCTAATTGGCAAGGCTaGCACTCGCTTTGTAGAAGTGAAAAAGAAACAAAA | + |
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Preference number: 3 (lower is better) Translates to: PGQFWFKSNWQG*HSLCRSEKETK Trigger: TTTTGTTTCTTTTTCACTTCTACAAAGCGAGTGGCAGCCTTGCCAATTAGACTTAAACCAGAATTGCCCAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | GGTGGTACAGCCATGCGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTCTGAAGAGGGGTCTGTaGGACTTCCATTGTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: GGTAMRCHDHDRGQARGALKRGL*DFHCAD Trigger: ATCAGCACAATGGAAGTCTCACAGACCCCTCTTCAG...AGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | ACGACAGGGGGCAAGCACGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATATCTGGTTCAGCACCTaGGAGGCGAGCTGCCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: TTGGKHEVLRQGLKQSKHIWFST*EASCPG Trigger: GCCAGGGCAGCTCGCCTCTCAGGTGCTGAACCAGAT...ATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCGTGCTTGCCCCCTGTCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | GGTGGTACAGCCATGCGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTTTCTGTACTAGTTTTTaGACTGCCAGTTTAGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: GGTAMRCHDHDRGQARGAFCTSF*TASLAR Trigger: ACGGGCTAAACTGGCAGTTCAAAAACTAGTACAGAA...AGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | CACCTTGGAGGTAGCTCTCTCAGGCAATACATAAAAGCCTGGGCAATTCTGGTTGAGCTGCCCTGGCCATaGAATATGGAGGCAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HLGGSSLRQYIKAWAILVELPWP*NMEAAL Trigger: GAGAGCTGCCTCCATATTTCATGGCCAGGGCAGCTC...AACCAGAATTGCCCAGGCTTTTATGTATTGCCTGAGAGAGCTACCTCCAAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | CTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCACGACAGCTTCTTCTCATGAACTaGAGAGGGGTCTGTGAGACT | + |
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Preference number: 4 (lower is better) Translates to: LISYPTRWYSHAMSRPRQLLLMN*RGVCET Trigger: AGTCTCACAGACCCCTCTTCAGTTCATGAGAAGAAG...CTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CCA 90 bp | CTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCACGACAGCTGCAAGGTAATGAGTaGCTGTCTCCACAGGACAAT | + |
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Preference number: 4 (lower is better) Translates to: LISYPTRWYSHAMSRPRQLQGNE*LSPQDN Trigger: ATTGTCCTGTGGAGACAGCCACTCATTACCTTGCAG...CTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | AGTCTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCACGAAAAGGTACAAGGAAGTaGCCACACGTTATTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SLISYPTRWYSHAMSRPRKGTRK*PHVIPA Trigger: GGCTGGAATAACGTGTGGGCACTTCCTTGTACCTTT...TCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | CACCTTGGAGGTAGCTCTCTCAGGCAATACATAAAAGCCTGGGCAATTCTGGTTAACCAGTTTTCTCCCTaGGGTGTGCCCGCTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: HLGGSSLRQYIKAWAILVNQFSP*GVPASL Trigger: AAGTGAAGCGGGCACACCGCAGGGAGAAAACTGGTT...AACCAGAATTGCCCAGGCTTTTATGTATTGCCTGAGAGAGCTACCTCCAAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | CTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCACGACAGACGATGCCACAATTTTaGGGTCCATTCCTTCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LISYPTRWYSHAMSRPRQTMPQF*GPFLQN Trigger: GTTTTGAAGGAATGGACCTCAAAATTGTGGCATCGT...CTGTCGTGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ACGACAGGGGGCAAGCACGAGGTGCTCAGGCAGGGTTTAAAGCAAAGCAAACATTCCAGAGAGAAATACTaGAAGGTAATGAGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: TTGGKHEVLRQGLKQSKHSREKY*KVMSGC Trigger: ACAGCCACTCATTACCTTGCAGTATTTCTCTCTGGA...ATGTTTGCTTTGCTTTAAACCCTGCCTGAGCACCTCGTGCTTGCCCCCTGTCGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CCA 90 bp | ACCAAAATGTCAGACAGCCCATCGACTGCTGTTGCCATGAGATTCAACAGTCAACCTGGCCATGAAATATaGAGGCAGCTCTCCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: TKMSDSPSTAVAMRFNSQPGHEI*RQLSNG Trigger: GCCATTGGAGAGCTGCCTCCATATTTCATGGCCAGG...TTGACTGTTGAATCTCATGGCAACAGCAGTCGATGGGCTGTCTGACATTTTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAGGTTCTGTGTGGCCCTGTGAAGGTATCAGAAGGCCAGTTTTTGTTGTCTTGTGCAGCCTCTaGATGTTCCAGCATTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TSEGSVWPCEGIRRPVFVVLCSL*MFQHFF Trigger: GAAGAAATGCTGGAACATGCAGAGGCTGCACAAGAC...AACAAAAACTGGCCTTCTGATACCTTCACAGGGCCACACAGAACCTTCTGAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CCA 90 bp | TCTGGTTTGCTGGGGCTTAATGCCAATTCTAGGAAAGAAAGCTGTTTATTTTCCGAGGCAGCTCTCCAATaGCTGTTCCAATGCCCCACA | + |
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Preference number: 4 (lower is better) Translates to: SGLLGLNANSRKESCLFSEAALQ*LFQCPT Trigger: TGTGGGGCATTGGAACAGCCATTGGAGAGCTGCCTC...GGAAAATAAACAGCTTTCTTTCCTAGAATTGGCATTAAGCCCCAGCAAACCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | GTTGCCATGAGATTCAACAGTCAACATCAGTCTGATAAGCTATCCGACAAGGTGCTTCTCTTCTTCTCATaGACTGAAGAGGGGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: VAMRFNSQHQSDKLSDKVLLFFS*TEEGSV Trigger: CACAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAG...CACCTTGTCGGATAGCTTATCAGACTGATGTTGACTGTTGAATCTCATGGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | ACCAAAATGTCAGACAGCCCATCGACTGCTGTTGCCATGAGATTCAACAGTCAAGACACCACAATGCTTTaGCGATGCCACAATTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: TKMSDSPSTAVAMRFNSQDTTML*RCHNFE Trigger: CTCAAAATTGTGGCATCGTCAAAGCATTGTGGTGTC...TTGACTGTTGAATCTCATGGCAACAGCAGTCGATGGGCTGTCTGACATTTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | TTAAGTCTAATTGGCAAGGCTGCCACTCGCTTTGTAGAAGTGAAAAAGAAACAACGGGGACAGCACCAATaGAAGTCACCATCTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LSLIGKAATRFVEVKKKQRGQHQ*KSPSAP Trigger: TGGAGCAGATGGTGACTTTCATTGGTGCTGTCCCCG...TTGTTTCTTTTTCACTTCTACAAAGCGAGTGGCAGCCTTGCCAATTAGACTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ATCAGTCTGATAAGCTATCCGACAAGGTGGTACAGCCATGCGATGTCACGACCAAAAAGGACACCACAATaGTTTGACGATGCCACAATT | + |
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Preference number: 4 (lower is better) Translates to: ISLISYPTRWYSHAMSRPKRTPQ*FDDATI Trigger: AATTGTGGCATCGTCAAAGCATTGTGGTGTCCTTTT...TGGTCGTGACATCGCATGGCTGTACCACCTTGTCGGATAGCTTATCAGACTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAGGTTCTGTGTGGCCCTGTGAAGGTATCAGAAGGCCAGTTTTTGTTTTTCCCAATCAGGGTTaGACCAAAGAAGGTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: TSEGSVWPCEGIRRPVFVFPNQG*TKEGPE Trigger: TTCTGGACCTTCTTTGGTGCAACCCTGATTGGGAAA...AACAAAAACTGGCCTTCTGATACCTTCACAGGGCCACACAGAACCTTCTGAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CCA 90 bp | GTTGCCATGAGATTCAACAGTCAACATCAGTCTGATAAGCTATCCGACAAGGTGTACTCCACAAAGAAATaGCTCCCTCAGCGCCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: VAMRFNSQHQSDKLSDKVYSTKK*LPQRLL Trigger: AAGAAGGCGCTGAGGGAGCCATTTCTTTGTGGAGTA...CACCTTGTCGGATAGCTTATCAGACTGATGTTGACTGTTGAATCTCATGGCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | TTAAGTCTAATTGGCAAGGCTGCCACTCGCTTTGTAGAAGTGAAAAAGAAACAAGCCTCCAGGTACTCTTaGAAAGGCTTCTGCAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LSLIGKAATRFVEVKKKQASRYS*KGFCRD Trigger: GTCTCTGCAGAAGCCTTTTCAAGAGTACCTGGAGGC...TTGTTTCTTTTTCACTTCTACAAAGCGAGTGGCAGCCTTGCCAATTAGACTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | AAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAGTCTATGAAAGTCACCATCTaGTCCACGATGTGCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: KFSLDTAAVVPRYKGSKSMKVTI*STMCLL Trigger: CAGCAAGCACATCGTGGAGCAGATGGTGACTTTCAT...AGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAGGTTCTGTGTGGCCCTGTGAAGGTATCAGAAGGCCAGTTTTTGTTCCTTACTCATTGCTATaGGTCTCTGGTCACAATTTT | + |
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Preference number: 4 (lower is better) Translates to: TSEGSVWPCEGIRRPVFVPYSLL*VSGHNF Trigger: AAAATTGTGACCAGAGACGCATAGCAATGAGTAAGG...AACAAAAACTGGCCTTCTGATACCTTCACAGGGCCACACAGAACCTTCTGAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | AAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAGTCTGCATACAAAAGAAACTaGTTCTCTATCCGCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: KFSLDTAAVVPRYKGSKSAYKRN*FSIRCT Trigger: TGTGCAGCGGATAGAGAAGCAGTTTCTTTTGTATGC...AGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAGGTTCTGTGTGGCCCTGTGAAGGTATCAGAAGGCCAGTTTTTGTTATGCATTTTAATGATTaGTTTCCCAATCAGGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: TSEGSVWPCEGIRRPVFVMHFND*FPNQGC Trigger: GCAACCCTGATTGGGAAAGCAATCATTAAAATGCAT...AACAAAAACTGGCCTTCTGATACCTTCACAGGGCCACACAGAACCTTCTGAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CAA 72 bp | AATTTCCTAGGAAGTTTTCTCTTGATACTGCTGCTGTaGTACCAAGGTATAAGGGCTCCAAGTCTCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: NFLGSFLLILLL*YQGIRAPSLTR Trigger: TCTTGTGAGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAGGAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR TCA 90 bp | TCTGGTTTGCTGGGGCTTAATGCCAATTCTAGGAAAGAAAGCTGTTTATTTTCCAGACTTCCATTGTGCTaGTCCTTACTCATTGCTATG | + |
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Preference number: 4 (lower is better) Translates to: SGLLGLNANSRKESCLFSRLPLC*SLLIAM Trigger: CATAGCAATGAGTAAGGATCAGCACAATGGAAGTCT...GGAAAATAAACAGCTTTCTTTCCTAGAATTGGCATTAAGCCCCAGCAAACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | GGGTTTAAAGCAAAGCAAACATCTCTGGTTTGCTGGGGCTTAATGCCAATTCTAAAAGTAACACACCATTaGAACCACCAGCTTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: GFKAKQTSLVCWGLMPILKVTHH*NHQLLK Trigger: TTTGAGAAGCTGGTGGTTGCAATGGTGTGTTACTTT...TAGAATTGGCATTAAGCCCCAGCAAACCAGAGATGTTTGCTTTGCTTTAAACCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR GCA 90 bp | TTAAGTCTAATTGGCAAGGCTGCCACTCGCTTTGTAGAAGTGAAAAAGAAACAAGGAAATTCACCGAATTaGATTCATAAGCAGCTAATG | + |
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Preference number: 4 (lower is better) Translates to: LSLIGKAATRFVEVKKKQGNSPN*IHKQLM Trigger: CATTAGCTGCTTATGAATGCAATTCGGTGAATTTCC...TTGTTTCTTTTTCACTTCTACAAAGCGAGTGGCAGCCTTGCCAATTAGACTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| 3UTR CAA 72 bp | ACAGCTAAAACTAACATGAACATGAAAAAGCCTTTCTaGCTAGTGTCCTCTGATTTATACATCACCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: TAKTNMNMKKPF*LVSSDLYITTS Trigger: AGAAGTGGTGATGTATAAATCAGAGGACACTAGCAAGAAAGGCTTTTTCATGTTCATGTTAGTTTTAGCTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CAA 90 bp | GGTGGTACAGCCATGCGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTCGCCTCCAGGTACTCTaGAAAAGGCTTCTGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: GGTAMRCHDHDRGQARGARLQVL*KRLLQR Trigger: TCTCTGCAGAAGCCTTTTCAAGAGTACCTGGAGGCG...AGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CAA 90 bp | GGTGGTACAGCCATGCGATGTCACGACCACGACAGGGGGCAAGCACGAGGTGCTCAAAGTAACACACCATaGCAACCACCAGCTTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: GGTAMRCHDHDRGQARGAQSNTP*QPPASQ Trigger: TTGAGAAGCTGGTGGTTGCAATGGTGTGTTACTTTG...AGCACCTCGTGCTTGCCCCCTGTCGTGGTCGTGACATCGCATGGCTGTACCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS GCA 90 bp | CCAATCAGGGTTGCACCAAAGAAGGTCCAGAAAGGTACAAGGAAGTaGCCACACGTTATTCCAGCCAGGTCAAACAGGGGGTTTGGAATA | + |
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Preference number: 5 (lower is better) Translates to: PIRVAPKKVQKGTRK*PHVIPARSNRGFGI Trigger: TATTCCAAACCCCCTGTTTGACCTGGCTGGAATAACGTGTGGGCACTTCCTTGTACCTTTCTGGACCTTCTTTGGTGCAACCCTGATTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS TCA 90 bp | CTTCCCGATCCCTTCTCTTCTTCTCATGAACTGAAGAGGGGTCTGTaGGACTTCCATTGTGCTGATCCTTACTCATTGCTATGCGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LPDPFSSSHELKRGL*DFHCADPYSLLCVS Trigger: AGAGACGCATAGCAATGAGTAAGGATCAGCACAATGGAAGTCTCACAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018315.10 ENSMUST00000143991.3 |
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| CDS-3UTR CAA 90 bp | AAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCAAGTCTGCTGATCCTTACTCATaGCTATGCGTCTCTGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: KFSLDTAAVVPRYKGSKSADPYS*LCVSGH Trigger: GTGACCAGAGACGCATAGCAATGAGTAAGGATCAGC...AGACTTGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS-3UTR CAA 90 bp | CTAGGAAGTTTTCTCTTGATACTGCTGCTGTTGTACCAAGGTATAAGGGCTCCATCGTTTGGCATAGTTTaGTGCCATGGAGTTAATAAT | + |
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Preference number: 5 (lower is better) Translates to: LGSFLLILLLLYQGIRAPSFGIV*CHGVNN Trigger: ATTATTAACTCCATGGCACAAAACTATGCCAAACGA...TGGAGCCCTTATACCTTGGTACAACAGCAGCAGTATCAAGAGAAAACTTCCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS CAA 72 bp | GTGATGAAGCTTCTGCCGCTGCGCCTCCAGGTACTCTaGAAAAGGCTTCTGCAGAGACGGACCTATGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: VMKLLPLRLQVL*KRLLQRRTYAG Trigger: CCCGGCATAGGTCCGTCTCTGCAGAAGCCTTTTCAAGAGTACCTGGAGGCGCAGCGGCAGAAGCTTCATCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS CAA 90 bp | TTCACTTCTGTGATGAAGCTTCTGCCGCTGCGCCTCCAGGTACTCTaGAAAAGGCTTCTGCAGAGACGGACCTATGCCGGGGACAGCACC | + |
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Preference number: 6 (lower is better) Translates to: FTSVMKLLPLRLQVL*KRLLQRRTYAGDST Trigger: GGTGCTGTCCCCGGCATAGGTCCGTCTCTGCAGAAGCCTTTTCAAGAGTACCTGGAGGCGCAGCGGCAGAAGCTTCATCACAGAAGTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS GCA 72 bp | GTTGCACCAAAGAAGGTCCAGAAAGGTACAAGGAAGTaGCCACACGTTATTCCAGCCAGGTCAAACAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VAPKKVQKGTRK*PHVIPARSNRG Trigger: CCCCCTGTTTGACCTGGCTGGAATAACGTGTGGGCACTTCCTTGTACCTTTCTGGACCTTCTTTGGTGCAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS GCA 72 bp | ATCCCCAGGCCTATCCAGTATGCATACAAAAGAAACTaGTTCTCTATCCGCTGCACATACTGTTGGTGCGCT | + |
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Preference number: 6 (lower is better) Translates to: IPRPIQYAYKRN*FSIRCTYCWCA Trigger: AGCGCACCAACAGTATGTGCAGCGGATAGAGAAGCAGTTTCTTTTGTATGCATACTGGATAGGCCTGGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS GCA 72 bp | CCTATGCCGGGGACAGCACCAATGAAAGTCACCATCTaGTCCACGATGTGCTTGCTGAAAGTTACTATAACA | + |
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Preference number: 6 (lower is better) Translates to: PMPGTAPMKVTI*STMCLLKVTIT Trigger: TGTTATAGTAACTTTCAGCAAGCACATCGTGGAGCAGATGGTGACTTTCATTGGTGCTGTCCCCGGCATAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS GCA 72 bp | CAAGCGCAGCAAGCAGCAGTAAAAAGGACACCACAATaGTTTGACGATGCCACAATTTTGAGGTCCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: QAQQAAVKRTPQ*FDDATILRSIP Trigger: AGGAATGGACCTCAAAATTGTGGCATCGTCAAAGCATTGTGGTGTCCTTTTTACTGCTGCTTGCTGCGCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS TCA 72 bp | CCCTTCTCTTCTTCTCATGAACTGAAGAGGGGTCTGTaGGACTTCCATTGTGCTGATCCTTACTCATTGCTA | + |
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Preference number: 6 (lower is better) Translates to: PFSSSHELKRGL*DFHCADPYSLL Trigger: TAGCAATGAGTAAGGATCAGCACAATGGAAGTCTCACAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018315.10 ENSMUST00000143991.3 |
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| CDS GCA 72 bp | ACAGCACCAATGAAAGTCACCATCTGCTCCACGATGTaGTTGCTGAAAGTTACTATAACAAATATTTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: TAPMKVTICSTM*LLKVTITNIFW Trigger: CCAGAAAATATTTGTTATAGTAACTTTCAGCAAGCACATCGTGGAGCAGATGGTGACTTTCATTGGTGCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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| CDS CAA 72 bp | GCACCAATGAAAGTCACCATCTGCTCCACGATGTGCTaGCTGAAAGTTACTATAACAAATATTTTCTGGATA | + |
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Preference number: 6 (lower is better) Translates to: APMKVTICSTMC*LKVTITNIFWI Trigger: TATCCAGAAAATATTTGTTATAGTAACTTTCAGCAAGCACATCGTGGAGCAGATGGTGACTTTCATTGGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018315.10 |
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