Pregenerated sensors for VMO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020830Ensembl transcript IDs: ENSMUST00000021179.4
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCAGGACACCACAGAGGCTCACTCCATGAACCCCAGCTTCCGGACTaGGACTCCACGACGTGGGTGTTTTTCTGTGAGTTCCCTCGAGTG | + |
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Preference number: 5 (lower is better) Translates to: PGHHRGSLHEPQLPD*DSTTWVFFCEFPRV Trigger: CACTCGAGGGAACTCACAGAAAAACACCCACGTCGTGGAGTCCCAGTCCGGAAGCTGGGGTTCATGGAGTGAGCCTCTGTGGTGTCCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 90 bp | CAGGACACATCTCAGGCCAGGCCCAATCACCCCAGGTACCACCGTTaGTCACGTCAACGATCGATGCATAGCGTGGTTCTACGTGAACTT | + |
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Preference number: 5 (lower is better) Translates to: QDTSQARPNHPRYHR*SRQRSMHSVVLREL Trigger: AAGTTCACGTAGAACCACGCTATGCATCGATCGTTGACGTGACCAACGGTGGTACCTGGGGTGATTGGGCCTGGCCTGAGATGTGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 90 bp | GGCCTCTTGGCTTCTGGATTTTGGTCTGCAAGCCACAGACACCTTTaGGACATGAGTTGCTCCACTCTCCGTAGTCTCCCCAGTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GLLASGFWSASHRHL*DMSCSTLRSLPSSA Trigger: GGCTGAACTGGGGAGACTACGGAGAGTGGAGCAACTCATGTCCCAAAGGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS GCA 90 bp | AGTGCAGTGTCATCTCGGAGGCCTCTTGGCTTCTGGATTTTGGTCTaGAAGCCACAGACACCTTTGGGACATGAGTTGCTCCACTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: SAVSSRRPLGFWILV*KPQTPLGHELLHSP Trigger: CGGAGAGTGGAGCAACTCATGTCCCAAAGGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCCTCCGAGATGACACTGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 90 bp | GAATATTCTGATGTCATTAAGTGCAGTGTCATCTCGGAGGCCTCTTaGCTTCTGGATTTTGGTCTGCAAGCCACAGACACCTTTGGGACA | + |
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Preference number: 5 (lower is better) Translates to: EYSDVIKCSVISEAS*LLDFGLQATDTFGT Trigger: TGTCCCAAAGGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCCTCCGAGATGACACTGCACTTAATGACATCAGAATATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS TCA 72 bp | CCAGTTCAGCCCAGGCCCCTCCAGCTCCACGCCGTCTaGGCAACGGAAGCGCACGTTGTTCACTCCAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: PVQPRPLQLHAV*ATEAHVVHSSV Trigger: AACACTGGAGTGAACAACGTGCGCTTCCGTTGCTCAGACGGCGTGGAGCTGGAGGGGCCTGGGCTGAACTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CAA 90 bp | CCAGGCCCCTCCAGCTCCACGCCGTCTGAGCAACGGAAGCGCACGTaGTTCACTCCAGTGTTGTCCCCTGGGAATGTAAATGGCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: PGPSSSTPSEQRKRT*FTPVLSPGNVNGST Trigger: GGTGGAGCCATTTACATTCCCAGGGGACAACACTGGAGTGAACAACGTGCGCTTCCGTTGCTCAGACGGCGTGGAGCTGGAGGGGCCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CAA 90 bp | TCCACGCCGTCTGAGCAACGGAAGCGCACGTTGTTCACTCCAGTGTaGTCCCCTGGGAATGTAAATGGCTCCACCCGGAGGCAGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: STPSEQRKRTLFTPV*SPGNVNGSTRRQKA Trigger: GGCTTTCTGCCTCCGGGTGGAGCCATTTACATTCCCAGGGGACAACACTGGAGTGAACAACGTGCGCTTCCGTTGCTCAGACGGCGTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 72 bp | TCTCAGGCCAGGCCCAATCACCCCAGGTACCACCGTTaGTCACGTCAACGATCGATGCATAGCGTGGTTCTA | + |
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Preference number: 6 (lower is better) Translates to: SQARPNHPRYHR*SRQRSMHSVVL Trigger: TAGAACCACGCTATGCATCGATCGTTGACGTGACCAACGGTGGTACCTGGGGTGATTGGGCCTGGCCTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 72 bp | ACGGAAGCGCACGTTGTTCACTCCAGTGTTGTCCCCTaGGAATGTAAATGGCTCCACCCGGAGGCAGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: TEAHVVHSSVVP*ECKWLHPEAES Trigger: GCTTTCTGCCTCCGGGTGGAGCCATTTACATTCCCAGGGGACAACACTGGAGTGAACAACGTGCGCTTCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CAA 72 bp | TCCAGCTCCACGCCGTCTGAGCAACGGAAGCGCACGTaGTTCACTCCAGTGTTGTCCCCTGGGAATGTAAAT | + |
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Preference number: 6 (lower is better) Translates to: SSSTPSEQRKRT*FTPVLSPGNVN Trigger: ATTTACATTCCCAGGGGACAACACTGGAGTGAACAACGTGCGCTTCCGTTGCTCAGACGGCGTGGAGCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS GCA 72 bp | CCACGACGTGGGTGTTTTTCTGTGAGTTCCCTCGAGTaGAGTGTAGCCGGATCCCATTCAGAGCTGTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: PRRGCFSVSSLE*SVAGSHSELCH Trigger: ATGACACAGCTCTGAATGGGATCCGGCTACACTGCACTCGAGGGAACTCACAGAAAAACACCCACGTCGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 72 bp | CAGTGTCATCTCGGAGGCCTCTTGGCTTCTGGATTTTaGTCTGCAAGCCACAGACACCTTTGGGACATGAGT | + |
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Preference number: 6 (lower is better) Translates to: QCHLGGLLASGF*SASHRHLWDMS Trigger: ACTCATGTCCCAAAGGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCCTCCGAGATGACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CAA 90 bp | TCATTAAGTGCAGTGTCATCTCGGAGGCCTCTTGGCTTCTGGATTTaGGTCTGCAAGCCACAGACACCTTTGGGACATGAGTTGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SLSAVSSRRPLGFWI*VCKPQTPLGHELLH Trigger: GTGGAGCAACTCATGTCCCAAAGGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCCTCCGAGATGACACTGCACTTAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS CCA 72 bp | GATGTCATTAAGTGCAGTGTCATCTCGGAGGCCTCTTaGCTTCTGGATTTTGGTCTGCAAGCCACAGACACC | + |
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Preference number: 6 (lower is better) Translates to: DVIKCSVISEAS*LLDFGLQATDT Trigger: GGTGTCTGTGGCTTGCAGACCAAAATCCAGAAGCCAAGAGGCCTCCGAGATGACACTGCACTTAATGACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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| CDS GCA 72 bp | TCAGCTGGCACAGCAGAATATTCTGATGTCATTAAGTaGAGTGTCATCTCGGAGGCCTCTTGGCTTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: SAGTAEYSDVIK*SVISEASWLLD Trigger: ATCCAGAAGCCAAGAGGCCTCCGAGATGACACTGCACTTAATGACATCAGAATATTCTGCTGTGCCAGCTGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021179.4 |
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