Pregenerated sensors for VMN2R98 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096717Ensembl transcript IDs: ENSMUST00000170424.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGAAGTGATCCAGGAATaGAGGCATCAGGTCTTAGAT | + |
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Preference number: 2 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMEVIQE*RHQVLD Trigger: ATCTAAGACCTGATGCCTCCATTCCTGGATCACTTC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| 3UTR-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAATATGGGCTCAGGTTaGATTGCTCTGGTTGATTCA | + |
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Preference number: 2 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMNMGSG*IALVDS Trigger: TGAATCAACCAGAGCAATCCAACCTGAGCCCATATT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| 3UTR-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCAGGTTGGATTGCTCTaGTTGATTCACATTTTATTT | + |
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Preference number: 2 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMQVGLL*LIHILF Trigger: AAATAAAATGTGAATCAACCAGAGCAATCCAACCTG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| 3UTR CCA 72 bp | GTTGGACATGTCACAAATTTTGTCAAACTAAGAATATaGGCTCAGGTTGGATTGCTCTGGTTGATTCACATT | + |
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Preference number: 3 (lower is better) Translates to: VGHVTNFVKLRI*AQVGLLWLIHI Trigger: AATGTGAATCAACCAGAGCAATCCAACCTGAGCCCATATTCTTAGTTTGACAAAATTTGTGACATGTCCAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAGCAGCAGATGGCCTTaGCCTCCAGGGTTACTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMSSRWP*PPGLLS Trigger: GGAAAGTAACCCTGGAGGGCAAGGCCATCTGCTGCT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGCCCACAACTCTCACTaGACACAGACTGAGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMAHNSH*TQTEGS Trigger: AGATCCCTCAGTCTGTGTGCAGTGAGAGTTGTGGGC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGGCAGATGTTATCCATaGTGTTCCTGTGAGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMGRCYP*CSCECC Trigger: GCAGCACTCACAGGAACATCATGGATAACATCTGCC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGATAAAGACAACTGTTaGCCCTGGGGAGCATTTGCA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMDKDNC*PWGAFA Trigger: TGCAAATGCTCCCCAGGGTCAACAGTTGTCTTTATC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCAAGGAGTGCTGTGCTaGAAGCCAAGATGGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMQGVLC*KPRWRI Trigger: TATTCTCCATCTTGGCTTCCAGCACAGCACTCCTTG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAGACTGAGGGATCTCTaGAAATATTGCTGGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMRLRDL*KYCWPL Trigger: CAATGGCCAGCAATATTTTCAGAGATCCCTCAGTCT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGTTCCTTTGTGGTCATTaGGGAGGATTAGACCAATCC | + |
|
Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMFLCGH*GGLDQS Trigger: GGATTGGTCTAATCCTCCCCAATGACCACAAAGGAA...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGTGCTCTCGGCATTCATaGCCACATCAAATATGTGAC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMCSRHS*PHQICD Trigger: GTCACATATTTGATGTGGCCATGAATGCCGAGAGCA...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGACATCCCCTTCACGGTaGAATTCTTCAGAGATTTTG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMTSPSR*NSSEIL Trigger: CAAAATCTCTGAAGAATTTCACCGTGAAGGGGATGT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCCTTGTTGCACAAAATaGGGATGTGTCCATATTCAG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMPCCTK*GCVHIQ Trigger: CTGAATATGGACACATCCTCATTTTGTGCAACAAGG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGTGAAGTGGGAAAAATaGACCAATTACAACATCCCC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMVKWEK*TNYNIP Trigger: GGGGATGTTGTAATTGGTGCATTTTTCCCACTTCAC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCATTGTAAATACTTGTaGTCTCGGCATTCATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMHCKYL*SRHSWP Trigger: TGGCCATGAATGCCGAGAGCACAAGTATTTACAATG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGACTGCAAATGTTGTCTaGTGTAGAATGCAGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMTANVV*CRMQEA Trigger: AGCTTCCTGCATTCTACAGCAGACAACATTTGCAGT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAAGAACACCATCCCATaGGGATTTTCATATGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMKNTIP*GFSYGC Trigger: GCAACCATATGAAAATCCCCATGGGATGGTGTTCTT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCCTTACCATTCTCCCTaGAAAACTGATCTTAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMPYHSP*KTDLKG Trigger: GCCTTTAAGATCAGTTTTCCAGGGAGAATGGTAAGG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGTCCTCAATGGCAAATTaGAGAGCAAGAATATACTGG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMSSMAN*RARIYW Trigger: CCAGTATATTCTTGCTCTGCAATTTGCCATTGAGGA...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGAATGGTGGAGATGTTaGCATCCATATTCCACAAAT | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMEWWRC*HPYSTN Trigger: ATTTGTGGAATATGGATGGCAACATCTCCACCATTC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCTTCCAAAGAAGCATTaGTTTGACAGTTTCCCAACA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMLPKKH*FDSFPT Trigger: TGTTGGGAAACTGTCAAACCAATGCTTCTTTGGAAG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCCACAAATAATTAGTTaGATCAGGGTGCTGATAGGA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMPQIIS*IRVLIG Trigger: TCCTATCAGCACCCTGATCCAACTAATTATTTGTGG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCATGACCACCTAAAATaGACCATCAATGAAACAATG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMHDHLK*TINETM Trigger: CATTGTTTCATTGATGGTTCATTTTAGGTGGTCATG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR TCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCAGTTTCCCAACACATaGCAATTAGTGTCAGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMQFPNT*QLVSEN Trigger: ATTTTCTGACACTAATTGTCATGTGTTGGGAAACTG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGTGTTCCTGTGAGTGCTaGAGTGAAATTTCTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMCSCEC*SEISLF Trigger: AAAAAGAGAAATTTCACTGCAGCACTCACAGGAACA...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR GCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGCTCTTCTCTTTATTTaGATAATGTCTCTCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMALLFI*IMSLRT Trigger: TGTCCTGAGAGACATTATGCAAATAAAGAGAAGAGC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGTAGAATGTGTGAAGTaGGAAAAATGCACCAATTAC | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMVECVK*EKCTNY Trigger: GTAATTGGTGCATTTTTCCCACTTCACACATTCTAC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGATGGGGATTTTCATATaGTTGCATTTGAAGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMMGIFI*LHLKLL Trigger: CAGCAACTTCAAATGCAACCATATGAAAATCCCCAT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CCA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGATTTTATTTCCTTTGTaGTCATTGGGGAGGATTAGA | + |
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Preference number: 4 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMILFPL*SLGRIR Trigger: TCTAATCCTCCCCAATGACCACAAAGGAAATAAAAT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 90 bp | TGCACTTGTAGCAGCAGATGGCCTTGCCCTCCAGGGTTACTTTCCTaGATCCAGGCCCACAACTCTCACTGCACACAGACTGAGGGATCT | + |
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Preference number: 5 (lower is better) Translates to: CTCSSRWPCPPGLLS*IQAHNSHCTQTEGS Trigger: AGATCCCTCAGTCTGTGTGCAGTGAGAGTTGTGGGCCTGGATTCAGGAAAGTAACCCTGGAGGGCAAGGCCATCTGCTGCTACAAGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS GCA 90 bp | TTTCACACACTTGTCTACATCTGTCTCATTAGAAATCTCATTGTCTaGACAAGGAGTGCACTTGTAGCAGCAGATGGCCTTGCCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FHTLVYICLIRNLIV*TRSALVAADGLALQ Trigger: CTGGAGGGCAAGGCCATCTGCTGCTACAAGTGCACTCCTTGTGCAGACAATGAGATTTCTAATGAGACAGATGTAGACAAGTGTGTGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS GCA 90 bp | AACACAGTACCAAGAGCCATAGTGAAAGCAACTGCAAATGTTGTCTaGTGTAGAATGCAGGAAGCTGTAGTTGGCTTACCAATGAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: NTVPRAIVKATANVV*CRMQEAVVGLPMKF Trigger: AAACTTCATTGGTAAGCCAACTACAGCTTCCTGCATTCTACAGCAGACAACATTTGCAGTTGCTTTCACTATGGCTCTTGGTACTGTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGCAACAGCTGAGCCCTaGTTGCACAAAATGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMATAEP*LHKMRM Trigger: CATCCTCATTTTGTGCAACAAGGGCTCAGCTGTTGC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCACCATTGTAAATACTaGTGCTCTCGGCATTCATGG | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMHHCKY*CSRHSW Trigger: CCATGAATGCCGAGAGCACAAGTATTTACAATGGTG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAAGCAACTGCAAATGTaGTCTGCTGTAGAATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMKQLQM*SAVECR Trigger: CCTGCATTCTACAGCAGACAACATTTGCAGTTGCTT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGCTCCTCAATGGCAAATaGCAGAGCAAGAATATACTG | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMLLNGK*QSKNIL Trigger: CAGTATATTCTTGCTCTGCAATTTGCCATTGAGGAG...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 90 bp | TTTAAAGAGTTGAAGCAATGTCCCAATTTGGGCAGATGTTATCCATaGTGTTCCTGTGAGTGCTGCAGTGAAATTTCTCTTTTTACAGTT | + |
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Preference number: 5 (lower is better) Translates to: FKELKQCPNLGRCYP*CSCECCSEISLFTV Trigger: AACTGTAAAAAGAGAAATTTCACTGCAGCACTCACAGGAACATCATGGATAACATCTGCCCAAATTGGGACATTGCTTCAACTCTTTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 90 bp | ATTGGTTTGACAGTTTCCCAACACATGACAATTAGTGTCAGAAAATaGGCACTTGAAGAACAAATACCACAGCTTAGGAAGATAAACGTC | + |
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Preference number: 5 (lower is better) Translates to: IGLTVSQHMTISVRK*ALEEQIPQLRKINV Trigger: GACGTTTATCTTCCTAAGCTGTGGTATTTGTTCTTCAAGTGCTCATTTTCTGACACTAATTGTCATGTGTTGGGAAACTGTCAAACCAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGGGGATTTTCATATGGTaGCATTTGAAGTTGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMGIFIW*HLKLLK Trigger: CTTCAGCAACTTCAAATGCAACCATATGAAAATCCC...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGTGCTCTTCTCTTTATTaGCATAATGTCTCTCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMCSSLY*HNVSQD Trigger: GTCCTGAGAGACATTATGCAAATAAAGAGAAGAGCA...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS-3UTR CAA 90 bp | TCAAAATTCAACATGAACAAGTTCTGTTACCAGGAATTCTCAGAGGAGTTCATGAGTATTTTATTTCCTTaGTGGTCATTGGGGAGGATT | + |
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Preference number: 5 (lower is better) Translates to: SKFNMNKFCYQEFSEEFMSILFP*WSLGRI Trigger: AATCCTCCCCAATGACCACAAAGGAAATAAAATACT...CATGAACTCCTCTGAGAATTCCTGGTAACAGAACTTGTTCATGTTGAATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | AGCAGCAGATGGCCTTGCCCTCCAGGGTTACTTTCCTaGATCCAGGCCCACAACTCTCACTGCACACAGACT | + |
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Preference number: 6 (lower is better) Translates to: SSRWPCPPGLLS*IQAHNSHCTQT Trigger: AGTCTGTGTGCAGTGAGAGTTGTGGGCCTGGATTCAGGAAAGTAACCCTGGAGGGCAAGGCCATCTGCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CCA 72 bp | CCAAGGGCCATGAAGCAGAGGTATCCCAGGACTGAATaGAAGGCAACAGCTGAGCCCTTGTTGCACAAAATG | + |
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Preference number: 6 (lower is better) Translates to: PRAMKQRYPRTE*KATAEPLLHKM Trigger: CATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCAGTCCTGGGATACCTCTGCTTCATGGCCCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | CAAAGGCAGTTAGTGCAGATAAGCACAAAGCTATGCTaGCTACTGCCATCCCCAAGGGGTCTTCATAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: QRQLVQISTKLC*LLPSPRGLHRP Trigger: TGGCCTATGAAGACCCCTTGGGGATGGCAGTAGCAAGCATAGCTTTGTGCTTATCTGCACTAACTGCCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | CTGAATCCAGGCCCACAACTCTCACTGCACACAGACTaGGGGATCTCTGAAAATATTGCTGGCCATTGTATC | + |
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Preference number: 6 (lower is better) Translates to: LNPGPQLSLHTD*GISENIAGHCI Trigger: GATACAATGGCCAGCAATATTTTCAGAGATCCCTCAGTCTGTGTGCAGTGAGAGTTGTGGGCCTGGATTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 90 bp | AAGCTGCCATGGAAAGAACACCATCCCATGGGGATTTTCATATGGTaGCATTTGAAGTTGCTGAAGTCTCATCTCATGGAGGCTGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: KLPWKEHHPMGIFIW*HLKLLKSHLMEAVS Trigger: GCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAATGCAACCATATGAAAATCCCCATGGGATGGTGTTCTTTCCATGGCAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | CCCACAACTCTCACTGCACACAGACTGAGGGATCTCTaGAAATATTGCTGGCCATTGTATCATCTGTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: PTTLTAHRLRDL*KYCWPLYHLFR Trigger: TCTGAACAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAGTCTGTGTGCAGTGAGAGTTGTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | GGCTGTGAGCCACAGCATACACACCATTGTAAATACTaGTGCTCTCGGCATTCATGGCCACATCAAATATGT | + |
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Preference number: 6 (lower is better) Translates to: GCEPQHTHHCKY*CSRHSWPHQIC Trigger: ACATATTTGATGTGGCCATGAATGCCGAGAGCACAAGTATTTACAATGGTGTGTATGCTGTGGCTCACAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | AATGGAAGGCAACAGCTGAGCCCTTGTTGCACAAAATaGGGATGTGTCCATATTCAGTATGAGCATCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: NGRQQLSPCCTK*GCVHIQYEHLG Trigger: ACCAAGATGCTCATACTGAATATGGACACATCCTCATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS GCA 72 bp | TGTGAGCCACAGCATACACACCATTGTAAATACTTGTaGTCTCGGCATTCATGGCCACATCAAATATGTGAC | + |
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Preference number: 6 (lower is better) Translates to: CEPQHTHHCKYL*SRHSWPHQICD Trigger: GTCACATATTTGATGTGGCCATGAATGCCGAGAGCACAAGTATTTACAATGGTGTGTATGCTGTGGCTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CCA 72 bp | TCAATGAAACAATGGCAAGTGAAAGAGATGTGTCCTTaGGGGATATCTGGTAGAGAGAAGAATACTGACCAC | + |
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Preference number: 6 (lower is better) Translates to: SMKQWQVKEMCP*GISGREKNTDH Trigger: GTGGTCAGTATTCTTCTCTCTACCAGATATCCCCCAAGGACACATCTCTTTCACTTGCCATTGTTTCATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | TTGAAGCAATGTCCCAATTTGGGCAGATGTTATCCATaGTGTTCCTGTGAGTGCTGCAGTGAAATTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LKQCPNLGRCYP*CSCECCSEISL Trigger: AAGAGAAATTTCACTGCAGCACTCACAGGAACATCATGGATAACATCTGCCCAAATTGGGACATTGCTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | CCAAGAGATATGTTGGGTAAAAGATTGGGGTTCCCATaGATCTCCTCAATGGCAAATTGCAGAGCAAGAATA | + |
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Preference number: 6 (lower is better) Translates to: PRDMLGKRLGFP*ISSMANCRARI Trigger: TATTCTTGCTCTGCAATTTGCCATTGAGGAGATCAATGGGAACCCCAATCTTTTACCCAACATATCTCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | TCTCACTGCACACAGACTGAGGGATCTCTGAAAATATaGCTGGCCATTGTATCATCTGTTCAGATAAAGACA | + |
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Preference number: 6 (lower is better) Translates to: SHCTQTEGSLKI*LAIVSSVQIKT Trigger: TGTCTTTATCTGAACAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAGTCTGTGTGCAGTGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 90 bp | CCAGAAAGCTCACAGATTTTTGGAAGCAGTTGCTCTTCTCTTTATTaGCATAATGTCTCTCAGGACATTTCACACACTTGTCTACATCTG | + |
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Preference number: 6 (lower is better) Translates to: PESSQIFGSSCSSLY*HNVSQDISHTCLHL Trigger: CAGATGTAGACAAGTGTGTGAAATGTCCTGAGAGACATTATGCAAATAAAGAGAAGAGCAACTGCTTCCAAAAATCTGTGAGCTTTCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | CAAGAGATATGTTGGGTAAAAGATTGGGGTTCCCATTaGTCTCCTCAATGGCAAATTGCAGAGCAAGAATAT | + |
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Preference number: 6 (lower is better) Translates to: QEICWVKDWGSH*SPQWQIAEQEY Trigger: ATATTCTTGCTCTGCAATTTGCCATTGAGGAGATCAATGGGAACCCCAATCTTTTACCCAACATATCTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | ACAGTTTCCCAACACATGACAATTAGTGTCAGAAAATaGGCACTTGAAGAACAAATACCACAGCTTAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: TVSQHMTISVRK*ALEEQIPQLRK Trigger: CTTCCTAAGCTGTGGTATTTGTTCTTCAAGTGCTCATTTTCTGACACTAATTGTCATGTGTTGGGAAACTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS GCA 72 bp | TTTCTTCAAAGAGTAGAATGTGTGAAGTGGGAAAAATaGACCAATTACAACATCCCCTTCACGGTGAAATTC | + |
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Preference number: 6 (lower is better) Translates to: FLQRVECVKWEK*TNYNIPFTVKF Trigger: GAATTTCACCGTGAAGGGGATGTTGTAATTGGTGCATTTTTCCCACTTCACACATTCTACTCTTTGAAGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | AAGATTGGGGTTCCCATTGATCTCCTCAATGGCAAATaGCAGAGCAAGAATATACTGGTAGTTCTTAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: KIGVPIDLLNGK*QSKNILVVLKV Trigger: AACTTTAAGAACTACCAGTATATTCTTGCTCTGCAATTTGCCATTGAGGAGATCAATGGGAACCCCAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | TATGTGACTAGGGAATACTTCCAAAGAAGCATTGGTTaGACAGTTTCCCAACACATGACAATTAGTGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: YVTREYFQRSIG*TVSQHMTISVR Trigger: TCTGACACTAATTGTCATGTGTTGGGAAACTGTCAAACCAATGCTTCTTTGGAAGTATTCCCTAGTCACATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | AACACCAGCATACTGAATGACAGAAATTTGGATTCATaGAATGTATCTGGCAAATTTCTAGACAAGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: NTSILNDRNLDS*NVSGKFLDKKA Trigger: GGCCTTCTTGTCTAGAAATTTGCCAGATACATTCAATGAATCCAAATTTCTGTCATTCAGTATGCTGGTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | TCTGTATCTATTGTCTGTCTCCAATCTAAACTCCTTTaGTCTTTCACTTCAATATCCTTCAGGAACGAGTTA | + |
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Preference number: 6 (lower is better) Translates to: SVSIVCLQSKLL*SFTSISFRNEL Trigger: TAACTCGTTCCTGAAGGATATTGAAGTGAAAGACAAAAGGAGTTTAGATTGGAGACAGACAATAGATACAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS TCA 72 bp | CTTTCTCGAGGGTGTTTTCTTCCTGATATGATTAAATaGATTCTTGTCTGGTCTCAACAAGATAATGTAACA | + |
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Preference number: 6 (lower is better) Translates to: LSRGCFLPDMIK*ILVWSQQDNVT Trigger: TGTTACATTATCTTGTTGAGACCAGACAAGAATTCATTTAATCATATCAGGAAGAAAACACCCTCGAGAAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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| CDS CAA 72 bp | ATAAGGTCCAAAATTAATCTGTGGAAATTTAAAGAGTaGAAGCAATGTCCCAATTTGGGCAGATGTTATCCA | + |
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Preference number: 6 (lower is better) Translates to: IRSKINLWKFKE*KQCPNLGRCYP Trigger: TGGATAACATCTGCCCAAATTGGGACATTGCTTCAACTCTTTAAATTTCCACAGATTAATTTTGGACCTTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170424.3 |
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