RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R93 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079698

Ensembl transcript IDs: ENSMUST00000079206.8, ENSMUST00000231879.3, ENSMUST00000231938.2

Found 290 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTGAGCAAGCCAGTGAAAGCAAGCCAGTAAAGAACATCCCTCCATaGCCTCTGCATCAGCTCCTGCTTCCTGACCTGATTGAGTTCCAG +
Preference number: 1 (lower is better)
Translates to: AEQASESKPVKNIPP*PLHQLLLPDLIEFQ
Trigger: CTGGAACTCAATCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTTCACTGGCTTGCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 90 bp TCTTTAGAAGGTTTGGAGACTGTACTGGCTGGTTTTATGTGTCACTaGGAAAGGAGCTTTAGCTGGGGAAGTGCCTCCATGAGATCCAGC +
Preference number: 1 (lower is better)
Translates to: SLEGLETVLAGFMCH*ERSFSWGSASMRSS
Trigger: GCTGGATCTCATGGAGGCACTTCCCCAGCTAAAGCTCCTTTCTCAGTGACACATAAAACCAGCCAGTACAGTCTCCAAACCTTCTAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 90 bp GTCAGGCAGAATACCCTGACATTATTACTGATACAACTTTGTGCTTaGAGGGAGCCCACACTTCTTGGTCTGAACCCCAAACACATACAT +
Preference number: 1 (lower is better)
Translates to: VRQNTLTLLLIQLCA*REPTLLGLNPKHIH
Trigger: ATGTATGTGTTTGGGGTTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGTAATAATGTCAGGGTATTCTGCCTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR GCA 90 bp CAGAAAGCTCACAGATTTTTGGAGGCAGTTGTTCCTCTCTGTATTTaGATAATGACTCTCTGGACACTTCACACACTGGTCTACATCTGG +
Preference number: 1 (lower is better)
Translates to: QKAHRFLEAVVPLCI*IMTLWTLHTLVYIW
Trigger: CCAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 90 bp AGAACATATCCCACATATAGGCAAAAGCTTTTTGTTCCAGTTGTTTaGGACACACATGGACACAAAGCTGACCATCTGCTACACATGTGC +
Preference number: 1 (lower is better)
Translates to: RTYPTYRQKLFVPVV*DTHGHKADHLLHMC
Trigger: GCACATGTGTAGCAGATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTATATGTGGGATATGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 90 bp TGTTTAAACAAGCCTATTGGGCCCAGAGAGTTGAAAGTACTAATTTaGATATGTTTGGCCAAGGGAGTTGTACCACTTGAAGGTGTGGCA +
Preference number: 1 (lower is better)
Translates to: CLNKPIGPRELKVLI*ICLAKGVVPLEGVA
Trigger: TGCCACACCTTCAAGTGGTACAACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATAGGCTTGTTTAAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 90 bp TCCATGTTCAGTATGAGCATCTTGGTCAATGAATGGTGGATAAGTTaGCATCCATATTCCACAAAGAAGAAGTTGGATCAGGGTGCAGAT +
Preference number: 1 (lower is better)
Translates to: SMFSMSILVNEWWIS*HPYSTKKKLDQGAD
Trigger: ATCTGCACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CCA 90 bp ATTTGCATAATGACTCTCTGGACACTTCACACACTGGTCTACATCTaGTCAGAAATAGAGGTGATCAAGAGATTAGGAGTTCAGGCTAAG +
Preference number: 1 (lower is better)
Translates to: ICIMTLWTLHTLVYI*SEIEVIKRLGVQAK
Trigger: CTTAGCCTGAACTCCTAATCTCTTGATCACCTCTATTTCTGACCAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CCA 90 bp GATGATGTGTCCATGTTCAGTATGAGCATCTTGGTCAATGAATGGTaGATAAGTTGCCATCCATATTCCACAAAGAAGAAGTTGGATCAG +
Preference number: 1 (lower is better)
Translates to: DDVSMFSMSILVNEW*ISCHPYSTKKKLDQ
Trigger: CTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACATCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR GCA 90 bp TTGTTCCAGTTGTTTGAGACACACATGGACACAAAGCTGACCATCTaGTACACATGTGCAATGAAGCCTAGGTTAAATGTAAGGTTTAAA +
Preference number: 1 (lower is better)
Translates to: LFQLFETHMDTKLTI*YTCAMKPRLNVRFK
Trigger: TTTAAACCTTACATTTAACCTAGGCTTCATTGCACATGTGTAGCAGATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR GCA 90 bp GTAGGTTGGACAAAATGTACTTTTTATAATGCTATGCTTAGGCATTaGCACCATAGAGTCAAGTGTTTAAACAAGCCTATTGGGCCCAGA +
Preference number: 1 (lower is better)
Translates to: VGWTKCTFYNAMLRH*HHRVKCLNKPIGPR
Trigger: TCTGGGCCCAATAGGCTTGTTTAAACACTTGACTCTATGGTGGCAATGCCTAAGCATAGCATTATAAAAAGTACATTTTGTCCAACCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CCA 90 bp AAGGATGATGTGTCCATGTTCAGTATGAGCATCTTGGTCAATGAATaGTGGATAAGTTGCCATCCATATTCCACAAAGAAGAAGTTGGAT +
Preference number: 1 (lower is better)
Translates to: KDDVSMFSMSILVNE*WISCHPYSTKKKLD
Trigger: ATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACATCATCCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CCA 90 bp GGATCCCAGACATTGGAACAAGAAACTAGAACATTGAAGTTGCCTTaGAAACTCCAAAATGTTCAAGATTCTAGAGGCATGTGTTATCTG +
Preference number: 1 (lower is better)
Translates to: GSQTLEQETRTLKLP*KLQNVQDSRGMCYL
Trigger: CAGATAACACATGCCTCTAGAATCTTGAACATTTTGGAGTTTCCAAGGCAACTTCAATGTTCTAGTTTCTTGTTCCAATGTCTGGGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 90 bp AGATTATGTGTGGATCCCAGACATTGGAACAAGAAACTAGAACATTaGAGTTGCCTTGGAAACTCCAAAATGTTCAAGATTCTAGAGGCA +
Preference number: 1 (lower is better)
Translates to: RLCVDPRHWNKKLEH*SCLGNSKMFKILEA
Trigger: TGCCTCTAGAATCTTGAACATTTTGGAGTTTCCAAGGCAACTTCAATGTTCTAGTTTCTTGTTCCAATGTCTGGGATCCACACATAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 90 bp TCTTTCCTTGAAGCCTTCACAAGATGTAGAATTTTCAGCTCCTGCTaGATCAAGTCTGATTGGATGATACCATGCTCTCATATTTATGAT +
Preference number: 1 (lower is better)
Translates to: SFLEAFTRCRIFSSC*IKSDWMIPCSHIYD
Trigger: ATCATAAATATGAGAGCATGGTATCATCCAATCAGACTTGATGCAGCAGGAGCTGAAAATTCTACATCTTGTGAAGGCTTCAAGGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCAGCACAAAGCTATGCTaGCAAGAGCCATCCCCAGGG +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFSTKLC*QEPSPG
Trigger: CCCTGGGGATGGCTCTTGCCAGCATAGCTTTGTGCT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCAGAGGGGGAACAGGGTaGAAAAGTCTGGGACAGAAG +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFRGGTG*KSLGQK
Trigger: CTTCTGTCCCAGACTTTTTCACCCTGTTCCCCCTCT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCGGAGCCCACACTTCTTaGTCTGAACCCCAAACACAT +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFGAHTS*SEPQTH
Trigger: ATGTGTTTGGGGTTCAGACCAAGAAGTGTGGGCTCC...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCAAGGTTGACCAGGGATaGGCACAACTTGGATTGCAT +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFKVDQG*AQLGLH
Trigger: ATGCAATCCAAGTTGTGCTCATCCCTGGTCAACCTT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCACTGATACAACTTTGTaGTTGAAGGGAGCCCACACT +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFTDTTL*LKGAHT
Trigger: AGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCACCATAGAGGCCTTTTaGAAGCTAACTTCTCCAAGA +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFTIEAF*KLTSPR
Trigger: TCTTGGAGAAGTTAGCTTGCAAAAGGCCTCTATGGT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTGCCACCACAGAGGGATaGGGAGTGGAAAGAGGAGTT +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILATTEG*GVERGV
Trigger: AACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGC...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCGCTGATGTATTTGGCTaGCCAATGAAGTTCAAAGAA +
Preference number: 2 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFADVFG*PMKFKE
Trigger: TTCTTTGAACTTCATTGGTCAGCCAAATACATCAGC...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AGGACCGAATGGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGGATGATGTGTTACAAACCACTGATATaGACCAGGAGTGGAGTCATC +
Preference number: 2 (lower is better)
Translates to: RTEWKATAEPLLHKRMMCYKPLI*TRSGVI
Trigger: GATGACTCCACTCCTGGTTCATATCAGTGGTTTGTA...ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp CCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCAGGATTGAAACCAGCTaGGTAGAAAGAAGTTACAGT +
Preference number: 2 (lower is better)
Translates to: PEIARVGPRAPGVLGVRVRIETS*VERSYS
Trigger: ACTGTAACTTCTTTCTACTCAGCTGGTTTCAATCCT...GACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTATCTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTAAGGTTGACCAGGGATaGGCACAACTTGGATTGCAT +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILKVDQG*AQLGLH
Trigger: ATGCAATCCAAGTTGTGCTCATCCCTGGTCAACCTT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCATAGTGAAGAAAGGTTaGCCAGGGATGAGCACAACT +
Preference number: 2 (lower is better)
Translates to: WYHLWDSIRKQAEQASESIVKKG*PGMSTT
Trigger: AGTTGTGCTCATCCCTGGTCAACCTTTCTTCACTAT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTGCAAAGGTGGTCTGCTaGAGGATGCAGGCTGATGTA +
Preference number: 2 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVAKVVC*RMQADV
Trigger: TACATCAGCCTGCATCCTTCAGCAGACCACCTTTGC...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTGCGAGTCATTTTCTGTaGGTAAACCTTCAGAGCCAC +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILASHFL*VNLQSH
Trigger: GTGGCTCTGAAGGTTTACCCACAGAAAATGACTCGC...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp TGGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCATGGAATACCATTGTTGGGTTTAAACAAGCCTATTaGGCCCAGAGAGTTGAAAGT +
Preference number: 2 (lower is better)
Translates to: WRAAEAWHYEKPWNTIVGFKQAY*AQRVES
Trigger: ACTTTCAACTCTCTGGGCCCAATAGGCTTGTTTAAA...CCCAACAATGGTATTCCATGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CCA 90 bp TGGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCATGGAATACCATTGTTGGGCTAGAAGATTATGTGTaGATCCCAGACATTGGAACA +
Preference number: 2 (lower is better)
Translates to: WRAAEAWHYEKPWNTIVGLEDYV*IPDIGT
Trigger: TGTTCCAATGTCTGGGATCCACACATAATCTTCTAG...CCCAACAATGGTATTCCATGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTGAAGGCAAGGAGTGCTaGGCTGGAAGCCAAGATAGA +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFEGKEC*AGSQDR
Trigger: TCTATCTTGGCTTCCAGCTCAGCACTCCTTGCCTTC...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp TCCCCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATGCTAGGATGGAAGCTTaGATGTCCCAACTGATGGAT +
Preference number: 2 (lower is better)
Translates to: SPFSFYCMVVGDCIFASHARMEA*MSQLMD
Trigger: ATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGC...ATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTTTTGTAGTCACTTTATaGCCCAGGAAAGGAGGATGC +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILFVVTL*PRKGGC
Trigger: GCATCCTCCTTTCCTGGGGCATAAAGTGACTACAAA...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTACTGATACAACTTTGTaGTTGAAGGGAGCCCACACT +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILTDTTL*LKGAHT
Trigger: AGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTGCCACCACAGAGGGATaGGGAGTGGAAAGAGGAGTT +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGATTEG*GVERGV
Trigger: AACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGC...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCAAGCTCACAGATTTTTaGAGGCAGTTGTTCCTCTCT +
Preference number: 2 (lower is better)
Translates to: WYHLWDSIRKQAEQASESKLTDF*RQLFLS
Trigger: AGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTAGTGGATCCCAGACATTaGAACAAGAAACTAGAACAT +
Preference number: 2 (lower is better)
Translates to: QRNCVPEIARVGPRAPGVVDPRH*NKKLEH
Trigger: ATGTTCTAGTTTCTTGTTCCAATGTCTGGGATCCAC...TACACCTGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CAA 90 bp GCAGGCCACCTAGAAGAACATATCCCACATATAGGCAAAAGCTTTTaGTTCCAGTTGTTTGAGACACACATGGACACAAAGCTGACCATC +
Preference number: 2 (lower is better)
Translates to: AGHLEEHIPHIGKSF*FQLFETHMDTKLTI
Trigger: GATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTATATGTGGGATATGTTCTTCTAGGTGGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 90 bp CCAGAAAGCTCACAGATTTTTGGAGGCAGTTGTTCCTCTCTGTATTaGCATAATGACTCTCTGGACACTTCACACACTGGTCTACATCTG +
Preference number: 2 (lower is better)
Translates to: PESSQIFGGSCSSLY*HNDSLDTSHTGLHL
Trigger: CAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTTCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TCCCCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTACAAACCACTGATATaGACCAGGAGTGGAGTCATC +
Preference number: 2 (lower is better)
Translates to: SPFSFYCMVVGDCIFASHYKPLI*TRSGVI
Trigger: GATGACTCCACTCCTGGTTCATATCAGTGGTTTGTA...ATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATACCACACTTCTTGGTCTaGACCCCAAACACATACATA +
Preference number: 2 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIPHFLV*TPNTYI
Trigger: TATGTATGTGTTTGGGGTTCAGACCAAGAAGTGTGG...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCCAGAGGTTAACAGAATaGTCAATCAATAACCAGGCA +
Preference number: 2 (lower is better)
Translates to: WYHLWDSIRKQAEQASESQRLTE*SINNQA
Trigger: TGCCTGGTTATTGATTGATCATTCTGTTAACCTCTG...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AGAGTACAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCACCTGATAATAAGGATTaGAACCAGCTGAGTAGAAAG +
Preference number: 2 (lower is better)
Translates to: RVQRNCVPEIARVGPRAPPDNKD*NQLSRK
Trigger: CTTTCTACTCAGCTGGTTTCAATCCTTATTATCAGG...TGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTGTACTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTCAGAGGGATGGGGAGTaGAAAGAGGAGTTCAGTATC +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFQRDGE*KEEFSI
Trigger: GATACTGAACTCCTCTTTCCACTCCCCATCCCTCTG...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCACAACATTGACAGCCTaGCAATCAGAGTTCCTTTTT +
Preference number: 2 (lower is better)
Translates to: WYHLWDSIRKQAEQASESTTLTA*QSEFLF
Trigger: AAAAAGGAACTCTGATTGCCAGGCTGTCAATGTTGT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp ATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCACCCATTGTGTTTATTGTGGATaGTATTGTTCACCTAACTTC +
Preference number: 2 (lower is better)
Translates to: IARVGPRAPGVLGVRVTHCVYCG*YCSPNF
Trigger: GAAGTTAGGTGAACAATACCATCCACAATAAACACA...ATGGGTGACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CAA 90 bp TGGAAAGAGGAGTTCAGTATCAGGTGTGGGAAAGGACAGATGAGATaGCTAGGTGGCAACGAAAATGAACGTAAATATGCAACTAATGGG +
Preference number: 2 (lower is better)
Translates to: WKEEFSIRCGKGQMR*LGGNENERKYATNG
Trigger: CCCATTAGTTGCATATTTACGTTCATTTTCGTTGCCACCTAGCAATCTCATCTGTCCTTTCCCACACCTGATACTGAACTCCTCTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTCCACACTTCTTGGTCTaGACCCCAAACACATACATA +
Preference number: 2 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVPHFLV*TPNTYI
Trigger: TATGTATGTGTTTGGGGTTCAGACCAAGAAGTGTGG...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTTTTGTTCCAGTTGTTTaGGACACACATGGACACAAA +
Preference number: 2 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILFVPVV*DTHGHK
Trigger: TTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAA...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTGAGCACAACTTGGATTaGATTCCATGGTCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFEHNLD*IPWSGR
Trigger: TCTGCCTGACCATGGAATGCAATCCAAGTTGTGCTC...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAGTCATACTTTACCAATaGATGACAGCCCATTTGTGC +
Preference number: 2 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIVILYQ*MTAHLC
Trigger: GCACAAATGGGCTGTCATGCATTGGTAAAGTATGAC...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTTTTATAATGCTATaGTTAGGCATTGCCACCATA +
Preference number: 2 (lower is better)
Translates to: QRNCVPEIARVGPRAPGVLFIML*LGIATI
Trigger: TATGGTGGCAATGCCTAAGCATAGCATTATAAAAAG...TACACCTGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAAGCCCACTGTTAGTCTaGCAGCTTTTGATGTTTCAA +
Preference number: 2 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCISPLLV*QLLMFQ
Trigger: TTGAAACATCAAAAGCTGCCAGACTAACAGTGGGCT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTAAGGATACAAACCACTaGTATGAACCAGGAGTGGAG +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFKDTNH*YEPGVE
Trigger: CTCCACTCCTGGTTCATATCAGTGGTTTGTATCCTT...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AATCTTCAAGCTAGGATGGAAGCTTGCATGTCCCAACTGATGGATTATCAACTTCCAGAAATTCTCAGATaGGTTGATGCACCAGAAAGC +
Preference number: 2 (lower is better)
Translates to: NLQARMEACMSQLMDYQLPEILR*VDAPES
Trigger: GCTTTCTGGTGCATCAACTCATCTGAGAATTTCTGG...AAGTTGATAATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGCTTGAAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATATTTGTTCCAGTTGTTTaGGACACACATGGACACAAA +
Preference number: 2 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIFVPVV*DTHGHK
Trigger: TTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAA...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGACTTTGGACCAAATATaGAGGCAAGGAGTGCTGAGC +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLTLDQI*RQGVLS
Trigger: GCTCAGCACTCCTTGCCTTCATATTTGGTCCAAAGT...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGGCCAGTAGCATGAAATaGTCACCAAGAACACCAGCA +
Preference number: 2 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLASSMK*SPRTPA
Trigger: TGCTGGTGTTCTTGGTGATCATTTCATGCTACTGGC...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR GCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCTGTTGCTATATGTTTTaGTGGAGAGGCATAAATATG +
Preference number: 2 (lower is better)
Translates to: WYHLWDSIRKQAEQASESCCYMF*WRGINM
Trigger: CATATTTATGCCTCTCCAGCAAAACATATAGCAACA...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGGCTAGGATGGAAGCTTaGATGTCCCAACTGATGGAT +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLARMEA*MSQLMD
Trigger: ATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGC...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTTTTGTAGTCACTTTATaGCCCAGGAAAGGAGGATGC +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFFVVTL*PRKGGC
Trigger: GCATCCTCCTTTCCTGGGGCATAAAGTGACTACAAA...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGAGGGCCCATTGTGGGTaGTACCATCTCTGGGATTCT +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLRAHCG*YHLWDS
Trigger: AGAATCCCAGAGATGGTACCACCCACAATGGGCCCT...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 90 bp CTAGAAGAACATATCCCACATATAGGCAAAAGCTTTTTGTTCCAGTaGTTTGAGACACACATGGACACAAAGCTGACCATCTGCTACACA +
Preference number: 2 (lower is better)
Translates to: LEEHIPHIGKSFLFQ*FETHMDTKLTICYT
Trigger: TGTGTAGCAGATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTATATGTGGGATATGTTCTTCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 90 bp CTTGTTGCACAAAAGGATGATGTGTCCATGTTCAGTATGAGCATCTaGGTCAATGAATGGTGGATAAGTTGCCATCCATATTCCACAAAG +
Preference number: 2 (lower is better)
Translates to: LVAQKDDVSMFSMSI*VNEWWISCHPYSTK
Trigger: CTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACATCATCCTTTTGTGCAACAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAAGAGGCATAAATATGTaGTACCCCAAATCTCATATG +
Preference number: 2 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIRGINM*YPKSHM
Trigger: CATATGAGATTTGGGGTATCACATATTTATGCCTCT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTATACAACTTTGTGCTTaGAGGGAGCCCACACTTCTT +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGIQLCA*REPTLL
Trigger: AAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTAT...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GATATGGAACATAATGAGGCCAACTCCTTTTCTCAGGCAGGGACCCATGTATTTATGAAACTCAGACCTTaGTTATTGGCCTTGACAATA +
Preference number: 2 (lower is better)
Translates to: DMEHNEANSFSQAGTHVFMKLRP*LLALTI
Trigger: TATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCAT...AAATACATGGGTCCCTGCCTGAGAAAAGGAGTTGGCCTCATTATGTTCCATATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGCCAGCATCACTGAGGTaGAATCATGTGGAAAGTGTT +
Preference number: 2 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLPASLR*NHVESV
Trigger: AACACTTTCCACATGATTTCACCTCAGTGATGCTGG...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR GCA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACTGGTCTGCTGAAGGATaGAGGCTGATGTATTTGGCT +
Preference number: 2 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNWSAEG*RLMYLA
Trigger: AGCCAAATACATCAGCCTGCATCCTTCAGCAGACCA...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp GATATGGAACATAATGAGGCCAACTCCTTTTCTCAGGCAGGGACCCATGTATTTGAAGGTCTGCTTTACTaGATTTTTGTCAAACAACTC +
Preference number: 2 (lower is better)
Translates to: DMEHNEANSFSQAGTHVFEGLLY*IFVKQL
Trigger: GAGTTGTTTGACAAAAATCCAGTAAAGCAGACCTTC...AAATACATGGGTCCCTGCCTGAGAAAAGGAGTTGGCCTCATTATGTTCCATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGGGAGACTGTACTGGCTaGTTTTATGTGTCACTGAGA +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLGDCTG*FYVSLR
Trigger: TCTCAGTGACACATAAAACCAGCCAGTACAGTCTCC...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp GTTCAAGAACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAGTAATGCCAGCCCTTTaGAGGCACCTAGAAGATTAT +
Preference number: 2 (lower is better)
Translates to: VQEQSTEQDPGHPSLLSQVMPAL*RHLEDY
Trigger: ATAATCTTCTAGGTGCCTCCAAAGGGCTGGCATTAC...TTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTTCTTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACAAGGATACAAACCACTaGTATGAACCAGGAGTGGAG +
Preference number: 2 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNKDTNH*YEPGVE
Trigger: CTCCACTCCTGGTTCATATCAGTGGTTTGTATCCTT...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTCAAACCTGCAACATATaGAAATCCAGAACAAAACTG +
Preference number: 2 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVQTCNI*KSRTKL
Trigger: CAGTTTTGTTCTGGATTTTCATATGTTGCAGGTTTG...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTCAGGAATATAAACCCTaGCTAAGACAGAGACTATGT +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFQEYKP*LRQRLC
Trigger: ACATAGTCTCTGTCTTAGTCAGGGTTTATATTCCTG...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTTGTGGAAATGTAAGCTaGATAAATCCTTTCCTCCCC +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGCGNVS*INPFLP
Trigger: GGGGAGGAAAGGATTTATTCAGCTTACATTTCCACA...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGAATACCATTGTTGGGTaGAAAGCCTCAGTTCCAGTT +
Preference number: 2 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLNTIVG*KASVPV
Trigger: AACTGGAACTGAGGCTTTTCACCCAACAATGGTATT...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR GCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTGTCATACTTTACCAATaGATGACAGCCCATTTGTGC +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGVILYQ*MTAHLC
Trigger: GCACAAATGGGCTGTCATGCATTGGTAAAGTATGAC...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGATACAACTTTGTGCTTaGAGGGAGCCCACACTTCTT +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLIQLCA*REPTLL
Trigger: AAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTAT...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTCAGAGGTTAACAGAATaGTCAATCAATAACCAGGCA +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGQRLTE*SINNQA
Trigger: TGCCTGGTTATTGATTGATCATTCTGTTAACCTCTG...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTTGTCCATGTTCAGTATaGGCATCTTGGTCAATGAAT +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGCPCSV*ASWSMN
Trigger: ATTCATTGACCAAGATGCTCATACTGAACATGGACA...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp ATACATTACATTTACTCATTCAGGAGACAGAACAATGCAGATCTTGGAGTTCAACTCTCTTCAGGGAACTaGAGATTGTGTCATACAGAC +
Preference number: 2 (lower is better)
Translates to: IHYIYSFRRQNNADLGVQLSSGN*RLCHTD
Trigger: GTCTGTATGACACAATCTTCAGTTCCCTGAAGAGAG...TTGAACTCCAAGATCTGCATTGTTCTGTCTCCTGAATGAGTAAATGTAATGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGCTGGTTTTAAAAGTATaGATGGATCATGGAGAGCAG +
Preference number: 2 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLLVLKV*MDHGEQ
Trigger: CTGCTCTCCATGATCCATTCATACTTTTAAAACCAG...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR GCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTATAGTAAAAGCCTTCTaGAAACCTGCAACATATGAA +
Preference number: 2 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVIVKAF*KPATYE
Trigger: TTCATATGTTGCAGGTTTGCAGAAGGCTTTTACTAT...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGAATAAGAACTTACTGTaGTCTGAGAGGCTCTACTCA +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLNKNLL*SERLYS
Trigger: TGAGTAGAGCCTCTCAGAGCACAGTAAGTTCTTATT...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTTCAGCATGTATATATTaGTGCTCTGGTTCAGGTCAT +
Preference number: 2 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGSACIY*CSGSGH
Trigger: ATGACCTGAACCAGAGCAGCAATATATACATGCTGA...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGGAACCACTGTTATTATaGATACTCAGGAAGGACACT +
Preference number: 2 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLEPLLL*ILRKDT
Trigger: AGTGTCCTTCCTGAGTATGCATAATAACAGTGGTTC...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTTATATAGTAAATTCCTaGGGAAGTTTAGGAAAGTGC +
Preference number: 2 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVYIVNS*GSLGKC
Trigger: GCACTTTCCTAAACTTCCCCAGGAATTTACTATATA...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGGGAGACTGTACTGGCTaGTTTTATGTGTCACTGAGA +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLGDCTG*FYVSLR
Trigger: TCTCAGTGACACATAAAACCAGCCAGTACAGTCTCC...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATACACTGGTCTACATCTaGTCAGAAATAGAGGTGATC +
Preference number: 2 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDTLVYI*SEIEVI
Trigger: GATCACCTCTATTTCTGACCAGATGTAGACCAGTGT...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AAATGTGTCAGTATGGACATAGGCTTTAAACCCTTGTCCTACCTGCCTAGAAGATTTGGACATTGCTTTTaGTTAGATGACCATTTTCAC +
Preference number: 2 (lower is better)
Translates to: KCVSMDIGFKPLSYLPRRFGHCF*LDDHFH
Trigger: GTGAAAATGGTCATCTAACCAAAAGCAATGTCCAAA...TCTTCTAGGCAGGTAGGACAAGGGTTTAAAGCCTATGTCCATACTGACACATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp AGCAGAAAAGGCAGTATATATAGTAAATTCCTGGGGAAGTTTAGGAAAGTGCACCAAACCTGCAACATATaGAAATCCAGAACAAAACTG +
Preference number: 2 (lower is better)
Translates to: SRKGSIYSKFLGKFRKVHQTCNI*KSRTKL
Trigger: CAGTTTTGTTCTGGATTTTCATATGTTGCAGGTTTG...GTGCACTTTCCTAAACTTCCCCAGGAATTTACTATATATACTGCCTTTTCTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTATAGTAAAAGCCTTCTaGAAACCTGCAACATATGAA +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFIVKAF*KPATYE
Trigger: TTCATATGTTGCAGGTTTGCAGAAGGCTTTTACTAT...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATGAATGGTGGATAAGTTaGCATCCATATTCCACAAAG +
Preference number: 2 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDEWWIS*HPYSTK
Trigger: CTTTGTGGAATATGGATGGCAACTTATCCACCATTC...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTGTCAAACAACTCTACTaGCTATTTAACTTTCAGTGT +
Preference number: 2 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFVKQLY*LFNFQC
Trigger: ACACTGAAAGTTAAATAGCCAGTAGAGTTGTTTGAC...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGAGCCCACTGTTAGTCTaGCAGCTTTTGATGTTTCAA +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLSPLLV*QLLMFQ
Trigger: TTGAAACATCAAAAGCTGCCAGACTAACAGTGGGCT...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AGAACAATGCAGATCTTGGAGTTCAAGAACAATCTACAGAACAAGATCCAGGACACATTGAAGTTGCCTTaGAAACTCCAAAATGTTCAA +
Preference number: 2 (lower is better)
Translates to: RTMQILEFKNNLQNKIQDTLKLP*KLQNVQ
Trigger: TTGAACATTTTGGAGTTTCCAAGGCAACTTCAATGT...GTCCTGGATCTTGTTCTGTAGATTGTTCTTGAACTCCAAGATCTGCATTGTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR TCA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATAGAGGCATAAATATGTaGTACCCCAAATCTCATATG +
Preference number: 2 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDRGINM*YPKSHM
Trigger: CATATGAGATTTGGGGTATCACATATTTATGCCTCT...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGCCTTCAGGCCAATGCTaGTGTAATTATATTTTTCAA +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLPSGQC*CNYIFQ
Trigger: TTGAAAAATATAATTACAGCAGCATTGGCCTGAAGG...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGGACATTTTTCTATACTaGAGCATAGAACTTTCTCAG +
Preference number: 2 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLDIFLY*SIELSQ
Trigger: CTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTC...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR TCA 90 bp ATACATTACATTTACTCATTCAGGAGACAGAACAATGCAGATCTTGGAGTTCAAGATCTTTCCATCTTCTaGTATCTTCCTCAATTTCTC +
Preference number: 2 (lower is better)
Translates to: IHYIYSFRRQNNADLGVQDLSIF*YLPQFL
Trigger: GAGAAATTGAGGAAGATATCAGAAGATGGAAAGATC...TTGAACTCCAAGATCTGCATTGTTCTGTCTCCTGAATGAGTAAATGTAATGTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR GCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGCTTAACATGAAGGTCTaGTTTACTGGATTTTTGTCA +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLLNMKV*FTGFLS
Trigger: TGACAAAAATCCAGTAAAGCAGACCTTCATGTTAAG...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR GCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGATGAACAATAATCTTTaGCACTGCCTATTTTCCTTC +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLMNNNL*HCLFSF
Trigger: GAAGGAAAATAGGCAGTGGCAAAGATTATTGTTCAT...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGCATCTATTATGGATATaGAACATAATGAGGCCAACT +
Preference number: 2 (lower is better)
Translates to: RFMCEYELHSLEGLETVLHLLWI*NIMRPT
Trigger: AGTTGGCCTCATTATGTTCCATATCCATAATAGATG...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CCA 72 bp CCGAGGGCCAAGAAACAGAGGTATCCCAGGACCGAATaGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGG +
Preference number: 3 (lower is better)
Translates to: PRAKKQRYPRTE*KATAEPLLHKR
Trigger: CCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGTCCTGGGATACCTCTGTTTCTTGGCCCTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 72 bp GGTTTGGAGACTGTACTGGCTGGTTTTATGTGTCACTaGGAAAGGAGCTTTAGCTGGGGAAGTGCCTCCATG +
Preference number: 3 (lower is better)
Translates to: GLETVLAGFMCH*ERSFSWGSASM
Trigger: CATGGAGGCACTTCCCCAGCTAAAGCTCCTTTCTCAGTGACACATAAAACCAGCCAGTACAGTCTCCAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CCA 72 bp ACCAAACAGAGCCTAGAGTACTACAGAAGACAGAGCTaGATAGGTAATGCCAGCCCTTTGGAGGCACCTAGA +
Preference number: 3 (lower is better)
Translates to: TKQSLEYYRRQS*IGNASPLEAPR
Trigger: TCTAGGTGCCTCCAAAGGGCTGGCATTACCTATCCAGCTCTGTCTTCTGTAGTACTCTAGGCTCTGTTTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp AGGACCGAATGGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGGATGATGTGTACCACAGTAATAGCTTaGGCCAACACAGTGGCAAGA +
Preference number: 3 (lower is better)
Translates to: RTEWKATAEPLLHKRMMCTTVIA*ANTVAR
Trigger: TCTTGCCACTGTGTTGGCCAAAGCTATTACTGTGGT...ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 72 bp AACTTTGTGCTTGAAGGGAGCCCACACTTCTTGGTCTaGACCCCAAACACATACATAGCAGAGGGCTTCCTT +
Preference number: 3 (lower is better)
Translates to: NFVLEGSPHFLV*TPNTYIAEGFL
Trigger: AAGGAAGCCCTCTGCTATGTATGTGTTTGGGGTTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp TGGCACTATGAGAAGCCATGGAATACCATTGTTGGGTaGAAAGCCTCAGTTCCAGTTAAAGGCCCAGGAGAG +
Preference number: 3 (lower is better)
Translates to: WHYEKPWNTIVG*KASVPVKGPGE
Trigger: CTCTCCTGGGCCTTTAACTGGAACTGAGGCTTTTCACCCAACAATGGTATTCCATGGCTTCTCATAGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 72 bp GCTGTTCCTTGGCCATGGGACACCATAGAGGCCTTTTaGAAGCTAACTTCTCCAAGAAGGAGAAATCCTGAT +
Preference number: 3 (lower is better)
Translates to: AVPWPWDTIEAF*KLTSPRRRNPD
Trigger: ATCAGGATTTCTCCTTCTTGGAGAAGTTAGCTTGCAAAAGGCCTCTATGGTGTCCCATGGCCAAGGAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCGCCCTCTCAATCTTGTaGACTATTTCAAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFALSIL*TISKFT
Trigger: AGTAAACTTTGAAATAGTCAACAAGATTGAGAGGGC...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCCATAGTGAAGAAAGGTaGACCAGGGATGAGCACAAC +
Preference number: 3 (lower is better)
Translates to: WYHLWDSIRKQAEQASESHSEER*TRDEHN
Trigger: GTTGTGCTCATCCCTGGTCAACCTTTCTTCACTATG...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AGGACCGAATGGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGGATGATGTGTAAAGCTCACAGATTTTaGGAGGCAGTTGTTCCTCTC +
Preference number: 3 (lower is better)
Translates to: RTEWKATAEPLLHKRMMCKAHRF*EAVVPL
Trigger: GAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTT...ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AGAGTACAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAAGGGAGTTGTACCACTaGAAGGTGTGGCATTGTGAA +
Preference number: 3 (lower is better)
Translates to: RVQRNCVPEIARVGPRAPRELYH*KVWHCE
Trigger: TTCACAATGCCACACCTTCAAGTGGTACAACTCCCT...TGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTGTACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 72 bp GGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGGATaGTGTGTCCATGTTCAGTATGAGCATCTTGGTCAA +
Preference number: 3 (lower is better)
Translates to: GRQQLSPCCTKG*CVHVQYEHLGQ
Trigger: TTGACCAAGATGCTCATACTGAACATGGACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 72 bp AGACCCCAGTGTTCTGGAGATGCCAGTAGCATGAAATaGTCACCAAGAACACCAGCAACAGTAGAATGGAAC +
Preference number: 3 (lower is better)
Translates to: RPQCSGDASSMK*SPRTPATVEWN
Trigger: GTTCCATTCTACTGTTGCTGGTGTTCTTGGTGATCATTTCATGCTACTGGCATCTCCAGAACACTGGGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp CAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACAAGAAACTAGAACATaGAAGTTGCCTTGGAAACTC +
Preference number: 3 (lower is better)
Translates to: QRNCVPEIARVGPRAPGVQETRT*KLPWKL
Trigger: GAGTTTCCAAGGCAACTTCAATGTTCTAGTTTCTTG...TACACCTGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 72 bp CATGACAGCCCATTTGTGCACATAGTGAAGAAAGGTTaGCCAGGGATGAGCACAACTTGGATTGCATTCCAT +
Preference number: 3 (lower is better)
Translates to: HDSPFVHIVKKG*PGMSTTWIAFH
Trigger: ATGGAATGCAATCCAAGTTGTGCTCATCCCTGGTCAACCTTTCTTCACTATGTGCACAAATGGGCTGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR GCA 72 bp GCAGAATACCCTGACATTATTACTGATACAACTTTGTaGTTGAAGGGAGCCCACACTTCTTGGTCTGAACCC +
Preference number: 3 (lower is better)
Translates to: AEYPDIITDTTL*LKGAHTSWSEP
Trigger: GGGTTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGTAATAATGTCAGGGTATTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CCA 72 bp CCATGTGGTACTGGTTTTAAAAGTATGAATGGATCATaGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCA +
Preference number: 3 (lower is better)
Translates to: PCGTGFKSMNGS*RAAEAWHYEKP
Trigger: TGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCATGATCCATTCATACTTTTAAAACCAGTACCACATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp AGGACCGAATGGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGGATGATGTGTAATGAAACTCAGACCTaGATTATTGGCCTTGACAAT +
Preference number: 3 (lower is better)
Translates to: RTEWKATAEPLLHKRMMCNETQT*IIGLDN
Trigger: ATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCATT...ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 72 bp ATCTTCAAGCTAGGATGGAAGCTTGCATGTCCCAACTaGTGGATTATCAACTTTCAGTGGCCAAAGGACCTA +
Preference number: 3 (lower is better)
Translates to: IFKLGWKLACPN*WIINFQWPKDL
Trigger: TAGGTCCTTTGGCCACTGAAAGTTGATAATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGCTTGAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp GTAACACTTTGGACCAAATATGAAGGCAAGGAGTGCTaGGCTGGAAGCCAAGATAGAGAATACTTCCATAGC +
Preference number: 3 (lower is better)
Translates to: VTLWTKYEGKEC*AGSQDREYFHS
Trigger: GCTATGGAAGTATTCTCTATCTTGGCTTCCAGCTCAGCACTCCTTGCCTTCATATTTGGTCCAAAGTGTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CCA 72 bp GCAGTTGTTCCTCTCTGTATTTGCATAATGACTCTCTaGACACTTCACACACTGGTCTACATCTGGTCAGAA +
Preference number: 3 (lower is better)
Translates to: AVVPLCICIMTL*TLHTLVYIWSE
Trigger: TTCTGACCAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAGGAACAACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AGAACAATGCAGATCTTGGAGTTCAAGAACAATCTACAGAACAAGATCCAGGACAGTAACCATGTGAACTaGGTAGCACTGGACATGTGC +
Preference number: 3 (lower is better)
Translates to: RTMQILEFKNNLQNKIQDSNHVN*VALDMC
Trigger: GCACATGTCCAGTGCTACCAAGTTCACATGGTTACT...GTCCTGGATCTTGTTCTGTAGATTGTTCTTGAACTCCAAGATCTGCATTGTTCT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 72 bp AATACCCTGACATTATTACTGATACAACTTTGTGCTTaGAGGGAGCCCACACTTCTTGGTCTGAACCCCAAA +
Preference number: 3 (lower is better)
Translates to: NTLTLLLIQLCA*REPTLLGLNPK
Trigger: TTTGGGGTTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGTAATAATGTCAGGGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp CCCACATATAGGCAAAAGCTTTTTGTTCCAGTTGTTTaGGACACACATGGACACAAAGCTGACCATCTGCTA +
Preference number: 3 (lower is better)
Translates to: PTYRQKLFVPVV*DTHGHKADHLL
Trigger: TAGCAGATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTATATGTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp GCCAAGGGAGTTGTACCACTTGAAGGTGTGGCATTGTaGAGAAAATGTGTCAGTATGGACATAGGCTTTAAA +
Preference number: 3 (lower is better)
Translates to: AKGVVPLEGVAL*RKCVSMDIGFK
Trigger: TTTAAAGCCTATGTCCATACTGACACATTTTCTTCACAATGCCACACCTTCAAGTGGTACAACTCCCTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 72 bp CACAATTCTTCTCACATACAACATCATATTCGCCTCTaGATAAGTATGGGCACACTGGTTATCCTCCCATTC +
Preference number: 3 (lower is better)
Translates to: HNSSHIQHHIRL*ISMGTLVILPF
Trigger: GAATGGGAGGATAACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR GCA 72 bp GAAGCCTTCACAAGATGTAGAATTTTCAGCTCCTGCTaGATCAAGTCTGATTGGATGATACCATGCTCTCAT +
Preference number: 3 (lower is better)
Translates to: EAFTRCRIFSSC*IKSDWMIPCSH
Trigger: ATGAGAGCATGGTATCATCCAATCAGACTTGATGCAGCAGGAGCTGAAAATTCTACATCTTGTGAAGGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CCA 72 bp ATGACTCTCTGGACACTTCACACACTGGTCTACATCTaGTCAGAAATAGAGGTGATCAAGAGATTAGGAGTT +
Preference number: 3 (lower is better)
Translates to: MTLWTLHTLVYI*SEIEVIKRLGV
Trigger: AACTCCTAATCTCTTGATCACCTCTATTTCTGACCAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTATAGGCAAAAGCTTTTaGTTCCAGTTGTTTGAGACA +
Preference number: 3 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILIGKSF*FQLFET
Trigger: TGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTAT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp AGTATCCCCATTCTCCTTCTACTGTATGGTAGTAGGTaGCTGTATCTTTGCGAGTCATTTTCTGTGGGTAAA +
Preference number: 3 (lower is better)
Translates to: SIPILLLLYGSR*LYLCESFSVGK
Trigger: TTTACCCACAGAAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp AAGCCTATTGGGCCCAGAGAGTTGAAAGTACTAATTTaGATATGTTTGGCCAAGGGAGTTGTACCACTTGAA +
Preference number: 3 (lower is better)
Translates to: KPIGPRELKVLI*ICLAKGVVPLE
Trigger: TTCAAGTGGTACAACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATAGGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 72 bp TTGTTTGAGACACACATGGACACAAAGCTGACCATCTaGTACACATGTGCAATGAAGCCTAGGTTAAATGTA +
Preference number: 3 (lower is better)
Translates to: LFETHMDTKLTI*YTCAMKPRLNV
Trigger: TACATTTAACCTAGGCTTCATTGCACATGTGTAGCAGATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CCA 72 bp GTGTCCATGTTCAGTATGAGCATCTTGGTCAATGAATaGTGGATAAGTTGCCATCCATATTCCACAAAGAAG +
Preference number: 3 (lower is better)
Translates to: VSMFSMSILVNE*WISCHPYSTKK
Trigger: CTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAATAGGCAAAAGCTTTTaGTTCCAGTTGTTTGAGACA +
Preference number: 3 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIIGKSF*FQLFET
Trigger: TGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTAT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACACAGCTGAGCCCTTGTaGCACAAAAGGATGATGTGT +
Preference number: 3 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNTAEPL*HKRMMC
Trigger: ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGT...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGGAAGACAGTCTTTCCTaGAAGCCTTCACAAGATGTA +
Preference number: 3 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLEDSLS*KPSQDV
Trigger: TACATCTTGTGAAGGCTTCAAGGAAAGACTGTCTTC...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp GTTCAAGAACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAATGTGGATCCCAGACATaGGAACAAGAAACTAGAACA +
Preference number: 3 (lower is better)
Translates to: VQEQSTEQDPGHPSLLSQCGSQT*EQETRT
Trigger: TGTTCTAGTTTCTTGTTCCAATGTCTGGGATCCACA...TTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTTCTTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR GCA 72 bp AGTATGAGCATCTTGGTCAATGAATGGTGGATAAGTTaGCATCCATATTCCACAAAGAAGAAGTTGGATCAG +
Preference number: 3 (lower is better)
Translates to: SMSILVNEWWIS*HPYSTKKKLDQ
Trigger: CTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CCA 72 bp CATTTACTCATTCAGGAGACAGAACAATGCAGATCTTaGAGTTCAAGAACAATCTACAGAACAAGATCCAGG +
Preference number: 3 (lower is better)
Translates to: HLLIQETEQCRS*SSRTIYRTRSR
Trigger: CCTGGATCTTGTTCTGTAGATTGTTCTTGAACTCCAAGATCTGCATTGTTCTGTCTCCTGAATGAGTAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGTGCTTTACTGGATTTTaGTCAAACAACTCTACTGGC +
Preference number: 3 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLCFTGF*SNNSTG
Trigger: GCCAGTAGAGTTGTTTGACAAAAATCCAGTAAAGCA...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTCTAGCCCTCTCAATCTaGTTGACTATTTCAAAGTTT +
Preference number: 3 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFLALSI*LTISKF
Trigger: AAACTTTGAAATAGTCAACAAGATTGAGAGGGCTAG...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATTGTTCCTCTCTGTATTaGCATAATGACTCTCTGGAC +
Preference number: 3 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDCSSLY*HNDSLD
Trigger: GTCCAGAGAGTCATTATGCAAATACAGAGAGGAACA...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR TCA 72 bp TCCTTTAGTGATGAACAGCAATGTGGAAATGTAAGCTaGATAAATCCTTTCCTCCCCAACTTGATTCTTGGT +
Preference number: 3 (lower is better)
Translates to: SFSDEQQCGNVS*INPFLPNLILG
Trigger: ACCAAGAATCAAGTTGGGGAGGAAAGGATTTATTCAGCTTACATTTCCACATTGCTGTTCATCACTAAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR TCA 72 bp ACAGACAAGCAGATTTCTGAGTTTAAGGCCATCGCGTaGCAGTGCAAGTTGCAAATTGAGAAAATCTTATAT +
Preference number: 3 (lower is better)
Translates to: TDKQISEFKAIA*QCKLQIEKILY
Trigger: ATATAAGATTTTCTCAATTTGCAACTTGCACTGTCACGCGATGGCCTTAAACTCAGAAATCTGCTTGTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR-3UTR CAA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTGCCCTCTCAATCTTGTaGACTATTTCAAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGALSIL*TISKFT
Trigger: AGTAAACTTTGAAATAGTCAACAAGATTGAGAGGGC...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGCTAGCCCTCTCAATCTaGTTGACTATTTCAAAGTTT +
Preference number: 3 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLLALSI*LTISKF
Trigger: AAACTTTGAAATAGTCAACAAGATTGAGAGGGCTAG...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGGTTTTGGTTTTGGTTTaGGTTGGTGGTTCGTTCTCT +
Preference number: 3 (lower is better)
Translates to: RFMCEYELHSLEGLETVLVLVLV*VGGSFS
Trigger: AGAGAACGAACCACCAACCAAAACCAAAACCAAAAC...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGAGCTTTTTGTTCCAGTaGTTTGAGACACACATGGAC +
Preference number: 3 (lower is better)
Translates to: RFMCEYELHSLEGLETVLSFLFQ*FETHMD
Trigger: GTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCT...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR-3UTR CAA 90 bp GTTCAAGAACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAACATTGAAGTTGCCTaGGAAACTCCAAAATGTTCA +
Preference number: 3 (lower is better)
Translates to: VQEQSTEQDPGHPSLLSQNIEVA*ETPKCS
Trigger: TGAACATTTTGGAGTTTCCAAGGCAACTTCAATGTT...TTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTTCTTGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 72 bp ATGTGTTATCTGCTGAGGAAACCTGATAATAAGGATTaGAACCAGCTGAGTAGAAAGAAGTTACAGTCAACA +
Preference number: 3 (lower is better)
Translates to: MCYLLRKPDNKD*NQLSRKKLQST
Trigger: TGTTGACTGTAACTTCTTTCTACTCAGCTGGTTTCAATCCTTATTATCAGGTTTCCTCAGCAGATAACACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CCA 72 bp GTCCACATTGAAATCAGCATGTATATATTGCTGCTCTaGTTCAGGTCATATTTAGAGAGTCATGTTGACAAT +
Preference number: 3 (lower is better)
Translates to: VHIEISMYILLL*FRSYLESHVDN
Trigger: ATTGTCAACATGACTCTCTAAATATGACCTGAACCAGAGCAGCAATATATACATGCTGATTTCAATGTGGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CCA 72 bp TTGTTATTATATAAAATTGATATTACTGGGCAGTCCTaGTACATGCCTTTAATCCCATCACTTGGTAGGCAG +
Preference number: 3 (lower is better)
Translates to: LLLYKIDITGQS*YMPLIPSLGRQ
Trigger: CTGCCTACCAAGTGATGGGATTAAAGGCATGTACCAGGACTGCCCAGTAATATCAATTTTATATAATAACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CCA 72 bp TGTAGAATTTTCAGCTCCTGCTGCATCAAGTCTGATTaGATGATACCATGCTCTCATATTTATGATAATGGA +
Preference number: 3 (lower is better)
Translates to: CRIFSSCCIKSD*MIPCSHIYDNG
Trigger: TCCATTATCATAAATATGAGAGCATGGTATCATCCAATCAGACTTGATGCAGCAGGAGCTGAAAATTCTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR TCA 72 bp ACATTTATGAATATAGAGTCATACTTTACCAATGCATaGCAGCCCATTTGTGCACATAGTGAAGAAAGGTTG +
Preference number: 3 (lower is better)
Translates to: TFMNIESYFTNA*QPICAHSEERL
Trigger: CAACCTTTCTTCACTATGTGCACAAATGGGCTGTCATGCATTGGTAAAGTATGACTCTATATTCATAAATGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCAGCAGCAGATGGCCTTaGCCTCCTGGCTTACTTTCC +
Preference number: 4 (lower is better)
Translates to: WYHLWDSIRKQAEQASESSSRWP*PPGLLS
Trigger: GGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp AGAGTACAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAAGCAGCAGATGGCCTTaGCCTCCTGGCTTACTTTCC +
Preference number: 4 (lower is better)
Translates to: RVQRNCVPEIARVGPRAPSSRWP*PPGLLS
Trigger: GGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCT...TGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTGTACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp CCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCGATAAGGACAACTGTTaGCCTTGGGGAGCATTTGCA +
Preference number: 4 (lower is better)
Translates to: PEIARVGPRAPGVLGVRVDKDNC*PWGAFA
Trigger: TGCAAATGCTCCCCAAGGCCAACAGTTGTCCTTATC...GACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTATCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCAGCACAAAGCTATGCTaGCAAGAGCCATCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: WYHLWDSIRKQAEQASESSTKLC*QEPSPG
Trigger: CCCTGGGGATGGCTCTTGCCAGCATAGCTTTGTGCT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCGGCCATTGTATCATCTaGTCAGATAAGGACAACTGT +
Preference number: 4 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFGHCII*SDKDNC
Trigger: ACAGTTGTCCTTATCTGAGCAGATGATACAATGGCC...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp ATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCACCCATTCTCTGCACAAGGAGTaGAATTGTAGCAGCAGATGG +
Preference number: 4 (lower is better)
Translates to: IARVGPRAPGVLGVRVTHSLHKE*NCSSRW
Trigger: CCATCTGCTGCTACAATTGCACTCCTTGTGCAGAGA...ATGGGTGACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp TGGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCATGGAATACCATTGTTGGGTACCCCCTTCAACACTaGAGGGACTTTCAGAAACAT +
Preference number: 4 (lower is better)
Translates to: WRAAEAWHYEKPWNTIVGYPLQH*RDFQKH
Trigger: ATGTTTCTGAAAGTCCCTTCAGTGTTGAAGGGGGTA...CCCAACAATGGTATTCCATGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCAAGCAGAGACAAGTTTaGGAATTTGCAATAGCCAGA +
Preference number: 4 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFKQRQV*EFAIAR
Trigger: TCTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AGAGTACAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAATGGCCTTGCCCTCCTaGCTTACTTTCCTGAATCCA +
Preference number: 4 (lower is better)
Translates to: RVQRNCVPEIARVGPRAPMALPS*LTFLNP
Trigger: TGGATTCAGGAAAGTAAGCCAGGAGGGCAAGGCCAT...TGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTGTACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCAAATCTCCTTCATGGTaGAACTCTTCAGTGATTATG +
Preference number: 4 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFKSPSW*NSSVIM
Trigger: CATAATCACTGAAGAGTTTCACCATGAAGGAGATTT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR TCA 90 bp ATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCACCCATAGATTGAGGGATCTCTaGAAATATTGCTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: IARVGPRAPGVLGVRVTHRLRDL*KYCWPL
Trigger: CAATGGCCAGCAATATTTTCAGAGATCCCTCAATCT...ATGGGTGACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAGAAGGCAAGGAGTGCTaGGCTGGAAGCCAAGATAGA +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIEGKEC*AGSQDR
Trigger: TCTATCTTGGCTTCCAGCTCAGCACTCCTTGCCTTC...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp ATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCACCCATTGCAGCTGTCTCATTTaGAATCTCATTCTCTGCACA +
Preference number: 4 (lower is better)
Translates to: IARVGPRAPGVLGVRVTHCSCLI*NLILCT
Trigger: TGTGCAGAGAATGAGATTTCAAATGAGACAGCTGCA...ATGGGTGACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR GCA 90 bp ATAGCCAGGGTTGGACCTAGAGCTCCAGGTGTACTTGGTGTTAGAGTCACCCATGGCCATTGTATCATCTaGTCAGATAAGGACAACTGT +
Preference number: 4 (lower is better)
Translates to: IARVGPRAPGVLGVRVTHGHCII*SDKDNC
Trigger: ACAGTTGTCCTTATCTGAGCAGATGATACAATGGCC...ATGGGTGACTCTAACACCAAGTACACCTGGAGCTCTAGGTCCAACCCTGGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTATGGCCTTGCCCTCCTaGCTTACTTTCCTGAATCCA +
Preference number: 4 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILMALPS*LTFLNP
Trigger: TGGATTCAGGAAAGTAAGCCAGGAGGGCAAGGCCAT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp TGGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCATGGAATACCATTGTTGGGAAATCTCCTTCATGGTaGAACTCTTCAGTGATTATG +
Preference number: 4 (lower is better)
Translates to: WRAAEAWHYEKPWNTIVGKSPSW*NSSVIM
Trigger: CATAATCACTGAAGAGTTTCACCATGAAGGAGATTT...CCCAACAATGGTATTCCATGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp TCCCCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATGGTGTTCAGTGTTCATaGCCCAGACAATCCATGTCA +
Preference number: 4 (lower is better)
Translates to: SPFSFYCMVVGDCIFASHGVQCS*PRQSMS
Trigger: TGACATGGATTGTCTGGGTCATGAACACTGAACACC...ATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR TCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAACTTTGGACCAAATATaGAGGCAAGGAGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCITLDQI*RQGVLS
Trigger: GCTCAGCACTCCTTGCCTTCATATTTGGTCCAAAGT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTAAGCAACTGCAAAGGTaGTCTGCTGAAGGATGCAGG +
Preference number: 4 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVKQLQR*SAEGCR
Trigger: CCTGCATCCTTCAGCAGACCACCTTTGCAGTTGCTT...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTAGATTGAGGGATCTCTaGAAATATTGCTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILRLRDL*KYCWPL
Trigger: CAATGGCCAGCAATATTTTCAGAGATCCCTCAATCT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAGCCTTGGGGAGCATTTaGAGAAAAGGATCCTACTTT +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIALGSI*RKGSYF
Trigger: AAAGTAGGATCCTTTTCTGCAAATGCTCCCCAAGGC...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp GATATGGAACATAATGAGGCCAACTCCTTTTCTCAGGCAGGGACCCATGTATTTCATAGTGAAAGCAACTaGAAAGGTGGTCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: DMEHNEANSFSQAGTHVFHSESN*KGGLLK
Trigger: CTTCAGCAGACCACCTTTGCAGTTGCTTTCACTATG...AAATACATGGGTCCCTGCCTGAGAAAAGGAGTTGGCCTCATTATGTTCCATATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCGAATGGTGGATAAGTTaGCATCCATATTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: WYHLWDSIRKQAEQASESEWWIS*HPYSTK
Trigger: CTTTGTGGAATATGGATGGCAACTTATCCACCATTC...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CCA 90 bp TATTGGGCCCAGAGAGTTGAAAGTACTAATTTGAATATGTTTGGCCAAGGGAGTAATTGTAGCAGCAGATaGCCTTGCCCTCCTGGCTTA +
Preference number: 4 (lower is better)
Translates to: YWAQRVESTNLNMFGQGSNCSSR*PCPPGL
Trigger: TAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATT...ACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTAAGCTCACAGATTTTTaGAGGCAGTTGTTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILKLTDF*RQLFLS
Trigger: AGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
3UTR CAA 72 bp GAATACCCTGACATTATTACTGATACAACTTTGTGCTaGAAGGGAGCCCACACTTCTTGGTCTGAACCCCAA +
Preference number: 4 (lower is better)
Translates to: EYPDIITDTTLC*KGAHTSWSEPQ
Trigger: TTGGGGTTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGTAATAATGTCAGGGTATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp CAGGCAGAATACCCTGACATTATTACTGATACAACTTaGTGCTTGAAGGGAGCCCACACTTCTTGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: QAEYPDIITDTT*CLKGAHTSWSE
Trigger: TTCAGACCAAGAAGTGTGGGCTCCCTTCAAGCACAAAGTTGTATCAGTAATAATGTCAGGGTATTCTGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp AAACTGACCTTAAAGGCAAGAACCACAGTAATAGCTTaGGCCAACACAGTGGCAAGAGCCATAGTGAAAGCA +
Preference number: 4 (lower is better)
Translates to: KLTLKARTTVIA*ANTVARAIVKA
Trigger: TGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTACTGTGGTTCTTGCCTTTAAGGTCAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CAA 72 bp AACCCTTGTCCTACCTGCCTAGAAGACAGTCTTTCCTaGAAGCCTTCACAAGATGTAGAATTTTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: NPCPTCLEDSLS*KPSQDVEFSAP
Trigger: AGGAGCTGAAAATTCTACATCTTGTGAAGGCTTCAAGGAAAGACTGTCTTCTAGGCAGGTAGGACAAGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp AATCTTCAAGCTAGGATGGAAGCTTGCATGTCCCAACTGATGGATTATCAACTTTGTGCACATGAGAGGTaGGCCAAATACCAGCATTCA +
Preference number: 4 (lower is better)
Translates to: NLQARMEACMSQLMDYQLCAHER*AKYQHS
Trigger: TGAATGCTGGTATTTGGCTCACCTCTCATGTGCACA...AAGTTGATAATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGCTTGAAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR TCA 90 bp TATTGGGCCCAGAGAGTTGAAAGTACTAATTTGAATATGTTTGGCCAAGGGAGTTGTGCACATGAGAGGTaGGCCAAATACCAGCATTCA +
Preference number: 4 (lower is better)
Translates to: YWAQRVESTNLNMFGQGSCAHER*AKYQHS
Trigger: TGAATGCTGGTATTTGGCTCACCTCTCATGTGCACA...ACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCTACATCTGTCTCATTTaGAATCTCATTCTCTGCACA +
Preference number: 4 (lower is better)
Translates to: WYHLWDSIRKQAEQASESYICLI*NLILCT
Trigger: TGTGCAGAGAATGAGATTTCAAATGAGACAGATGTA...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATGCAAAGGTGGTCTGCTaGAGGATGCAGGCTGATGTA +
Preference number: 4 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDAKVVC*RMQADV
Trigger: TACATCAGCCTGCATCCTTCAGCAGACCACCTTTGC...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTTGTCCATGTTCAGTATaGGCATCTTGGTCAATGAAT +
Preference number: 4 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILCPCSV*ASWSMN
Trigger: ATTCATTGACCAAGATGCTCATACTGAACATGGACA...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATATCCTCAATGGCAAATTaGAGAGCCAGAATATACTGG +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCISSMAN*RARIYW
Trigger: CCAGTATATTCTGGCTCTGCAATTTGCCATTGAGGA...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAGGCCATTGTATCATCTaGTCAGATAAGGACAACTGT +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIGHCII*SDKDNC
Trigger: ACAGTTGTCCTTATCTGAGCAGATGATACAATGGCC...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp CAACTCCTTTTCTCAGGCAGGGACCCATGTATTTTCAGCCCAAACTCTATCCTTAAGCAGAGACAAGTTTaGGAATTTGCAATAGCCAGA +
Preference number: 4 (lower is better)
Translates to: QLLFSGRDPCIFSPNSILKQRQV*EFAIAR
Trigger: TCTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTT...AAGGATAGAGTTTGGGCTGAAAATACATGGGTCCCTGCCTGAGAAAAGGAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp TCCCCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATACCCAAGAGATATGTTaGGTAAAAGATTGGGGTTCC +
Preference number: 4 (lower is better)
Translates to: SPFSFYCMVVGDCIFASHTQEIC*VKDWGS
Trigger: GGAACCCCAATCTTTTACCCAACATATCTCTTGGGT...ATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp GATATGGAACATAATGAGGCCAACTCCTTTTCTCAGGCAGGGACCCATGTATTTAGTAATGTCCCAATTTaGGCAGATGCCATCCATGAT +
Preference number: 4 (lower is better)
Translates to: DMEHNEANSFSQAGTHVFSNVPI*ADAIHD
Trigger: ATCATGGATGGCATCTGCCCAAATTGGGACATTACT...AAATACATGGGTCCCTGCCTGAGAAAAGGAGTTGGCCTCATTATGTTCCATATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AGAGTACAAAGAAACTGTGTTCCAGAGATAGCCAGGGTTGGACCTAGAGCTCCAAGTATGAAGTCCATGTaGCTGGGATCATTTTTACAA +
Preference number: 4 (lower is better)
Translates to: RVQRNCVPEIARVGPRAPSMKSM*LGSFLQ
Trigger: TTGTAAAAATGATCCCAGCCACATGGACTTCATACT...TGGAGCTCTAGGTCCAACCCTGGCTATCTCTGGAACACAGTTTCTTTGTACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGAATTGTAGCAGCAGATaGCCTTGCCCTCCTGGCTTA +
Preference number: 4 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLNCSSR*PCPPGL
Trigger: TAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATT...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp AGCAGAAAAGGCAGTATATATAGTAAATTCCTGGGGAAGTTTAGGAAAGTGCACGGTGTTCAGTGTTCATaGCCCAGACAATCCATGTCA +
Preference number: 4 (lower is better)
Translates to: SRKGSIYSKFLGKFRKVHGVQCS*PRQSMS
Trigger: TGACATGGATTGTCTGGGTCATGAACACTGAACACC...GTGCACTTTCCTAAACTTCCCCAGGAATTTACTATATATACTGCCTTTTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR TCA 90 bp GTTCAAGAACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAGGTGTTCAGTGTTCATaGCCCAGACAATCCATGTCA +
Preference number: 4 (lower is better)
Translates to: VQEQSTEQDPGHPSLLSQGVQCS*PRQSMS
Trigger: TGACATGGATTGTCTGGGTCATGAACACTGAACACC...TTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTTCTTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp AATCTTCAAGCTAGGATGGAAGCTTGCATGTCCCAACTGATGGATTATCAACTTTTCCTGAATCCAGACTaGCAACTCTCACTACACACA +
Preference number: 4 (lower is better)
Translates to: NLQARMEACMSQLMDYQLFLNPD*QLSLHT
Trigger: TGTGTGTAGTGAGAGTTGTCAGTCTGGATTCAGGAA...AAGTTGATAATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGCTTGAAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGCCTGGCTTACTTTCCTaGATCCAGACTGACAACTCT +
Preference number: 4 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLPGLLS*IQTDNS
Trigger: AGAGTTGTCAGTCTGGATTCAGGAAAGTAAGCCAGG...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR TCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGCCTGGCTTACTTTCCTaGATCCAGACTGACAACTCT +
Preference number: 4 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLPGLLS*IQTDNS
Trigger: AGAGTTGTCAGTCTGGATTCAGGAAAGTAAGCCAGG...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR GCA 90 bp AAATGTGTCAGTATGGACATAGGCTTTAAACCCTTGTCCTACCTGCCTAGAAGATCCTCAATGGCAAATTaGAGAGCCAGAATATACTGG +
Preference number: 4 (lower is better)
Translates to: KCVSMDIGFKPLSYLPRRSSMAN*RARIYW
Trigger: CCAGTATATTCTGGCTCTGCAATTTGCCATTGAGGA...TCTTCTAGGCAGGTAGGACAAGGGTTTAAAGCCTATGTCCATACTGACACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR GCA 90 bp AGCAGAAAAGGCAGTATATATAGTAAATTCCTGGGGAAGTTTAGGAAAGTGCACTCTCTGCACAAGGAGTaGAATTGTAGCAGCAGATGG +
Preference number: 4 (lower is better)
Translates to: SRKGSIYSKFLGKFRKVHSLHKE*NCSSRW
Trigger: CCATCTGCTGCTACAATTGCACTCCTTGTGCAGAGA...GTGCACTTTCCTAAACTTCCCCAGGAATTTACTATATATACTGCCTTTTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTAGTAATGTCCCAATTTaGGCAGATGCCATCCATGAT +
Preference number: 4 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVSNVPI*ADAIHD
Trigger: ATCATGGATGGCATCTGCCCAAATTGGGACATTACT...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AAATGTGTCAGTATGGACATAGGCTTTAAACCCTTGTCCTACCTGCCTAGAAGAAGTAATGTCCCAATTTaGGCAGATGCCATCCATGAT +
Preference number: 4 (lower is better)
Translates to: KCVSMDIGFKPLSYLPRRSNVPI*ADAIHD
Trigger: ATCATGGATGGCATCTGCCCAAATTGGGACATTACT...TCTTCTAGGCAGGTAGGACAAGGGTTTAAAGCCTATGTCCATACTGACACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTGATAAGGACAACTGTTaGCCTTGGGGAGCATTTGCA +
Preference number: 4 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGDKDNC*PWGAFA
Trigger: TGCAAATGCTCCCCAAGGCCAACAGTTGTCCTTATC...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp CATATCCCACATATAGGCAAAAGCTTTTTGTTCCAGTaGTTTGAGACACACATGGACACAAAGCTGACCATC +
Preference number: 4 (lower is better)
Translates to: HIPHIGKSFLFQ*FETHMDTKLTI
Trigger: GATGGTCAGCTTTGTGTCCATGTGTGTCTCAAACAACTGGAACAAAAAGCTTTTGCCTATATGTGGGATATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp AGAAAATGTGTCAGTATGGACATAGGCTTTAAACCCTaGTCCTACCTGCCTAGAAGACAGTCTTTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: RKCVSMDIGFKP*SYLPRRQSFLE
Trigger: TTCAAGGAAAGACTGTCTTCTAGGCAGGTAGGACAAGGGTTTAAAGCCTATGTCCATACTGACACATTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp GTTCAAGAACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAATTCCTGAATCCAGACTaGCAACTCTCACTACACACA +
Preference number: 4 (lower is better)
Translates to: VQEQSTEQDPGHPSLLSQFLNPD*QLSLHT
Trigger: TGTGTGTAGTGAGAGTTGTCAGTCTGGATTCAGGAA...TTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTTCTTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAGAAATTTCAAGAACATaGTGTTCAGTGTTCATGACC +
Preference number: 4 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIEISRT*CSVFMT
Trigger: GGTCATGAACACTGAACACCATGTTCTTGAAATTTC...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTTGCATAATGACTCTCTaGACACTTCACACACTGGTC +
Preference number: 4 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGCIMTL*TLHTLV
Trigger: GACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCA...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR GCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGTCCTCAATGGCAAATTaGAGAGCCAGAATATACTGG +
Preference number: 4 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLSSMAN*RARIYW
Trigger: CCAGTATATTCTGGCTCTGCAATTTGCCATTGAGGA...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATGCCTTGGGGAGCATTTaGAGAAAAGGATCCTACTTT +
Preference number: 4 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDALGSI*RKGSYF
Trigger: AAAGTAGGATCCTTTTCTGCAAATGCTCCCCAAGGC...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR GCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGTGGTCTGCTGAAGGATaGAGGCTGATGTATTTGGCT +
Preference number: 4 (lower is better)
Translates to: RFMCEYELHSLEGLETVLWSAEG*RLMYLA
Trigger: AGCCAAATACATCAGCCTGCATCCTTCAGCAGACCA...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CCA 90 bp TGTGATGAGCAAAATGAAACTCAGACCTTGATTATTGGCCTTGACAATAGGAGTACCCAAGAGATATGTTaGGTAAAAGATTGGGGTTCC +
Preference number: 4 (lower is better)
Translates to: CDEQNETQTLIIGLDNRSTQEIC*VKDWGS
Trigger: GGAACCCCAATCTTTTACCCAACATATCTCTTGGGT...ACTCCTATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCATTTTGCTCATCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AATCTTCAAGCTAGGATGGAAGCTTGCATGTCCCAACTGATGGATTATCAACTTATTTTATTTCCCTTGTaGTCATCTGGGAGGATGAGA +
Preference number: 4 (lower is better)
Translates to: NLQARMEACMSQLMDYQLILFPL*SSGRMR
Trigger: TCTCATCCTCCCAGATGACCACAAGGGAAATAAAAT...AAGTTGATAATCCATCAGTTGGGACATGCAAGCTTCCATCCTAGCTTGAAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp TATTGGGCCCAGAGAGTTGAAAGTACTAATTTGAATATGTTTGGCCAAGGGAGTATTTTATTTCCCTTGTaGTCATCTGGGAGGATGAGA +
Preference number: 4 (lower is better)
Translates to: YWAQRVESTNLNMFGQGSILFPL*SSGRMR
Trigger: TCTCATCCTCCCAGATGACCACAAGGGAAATAAAAT...ACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp TCTTCTCACATACAACATCATATTCGCCTCTGCATAAGTATGGGCACACTGGTTAGTATGAAGTCCATGTaGCTGGGATCATTTTTACAA +
Preference number: 4 (lower is better)
Translates to: SSHIQHHIRLCISMGTLVSMKSM*LGSFLQ
Trigger: TTGTAAAAATGATCCCAGCCACATGGACTTCATACT...AACCAGTGTGCCCATACTTATGCAGAGGCGAATATGATGTTGTATGTGAGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGGATAAGGACAACTGTTaGCCTTGGGGAGCATTTGCA +
Preference number: 4 (lower is better)
Translates to: RFMCEYELHSLEGLETVLDKDNC*PWGAFA
Trigger: TGCAAATGCTCCCCAAGGCCAACAGTTGTCCTTATC...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACCCACAAAGAAGAAGTTaGATCAGGGTGCAGATAGGA +
Preference number: 4 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNPQRRS*IRVQIG
Trigger: TCCTATCTGCACCCTGATCCAACTTCTTCTTTGTGG...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
3UTR CAA 72 bp CAAAAGGATGATGTGTCCATGTTCAGTATGAGCATCTaGGTCAATGAATGGTGGATAAGTTGCCATCCATAT +
Preference number: 4 (lower is better)
Translates to: QKDDVSMFSMSI*VNEWWISCHPY
Trigger: ATATGGATGGCAACTTATCCACCATTCATTGACCAAGATGCTCATACTGAACATGGACACATCATCCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp CCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTTTAGTATGAAGTCCATGTaGCTGGGATCATTTTTACAA +
Preference number: 4 (lower is better)
Translates to: PFSFYCMVVGDCIFASHFSMKSM*LGSFLQ
Trigger: TTGTAAAAATGATCCCAGCCACATGGACTTCATACT...AAAATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp ACATTTACTCATTCAGGAGACAGAACAATGCAGATCTaGGAGTTCAAGAACAATCTACAGAACAAGATCCAG +
Preference number: 4 (lower is better)
Translates to: TFTHSGDRTMQI*EFKNNLQNKIQ
Trigger: CTGGATCTTGTTCTGTAGATTGTTCTTGAACTCCAAGATCTGCATTGTTCTGTCTCCTGAATGAGTAAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR TCA 90 bp AGCAGAAAAGGCAGTATATATAGTAAATTCCTGGGGAAGTTTAGGAAAGTGCACAAATCTCCTTCATGGTaGAACTCTTCAGTGATTATG +
Preference number: 4 (lower is better)
Translates to: SRKGSIYSKFLGKFRKVHKSPSW*NSSVIM
Trigger: CATAATCACTGAAGAGTTTCACCATGAAGGAGATTT...GTGCACTTTCCTAAACTTCCCCAGGAATTTACTATATATACTGCCTTTTCTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR TCA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGATGAAACTCAGACCTTaGTTATTGGCCTTGACAATA +
Preference number: 4 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLMKLRP*LLALTI
Trigger: TATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCAT...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CCA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACATTTTATTTCCCTTGTaGTCATCTGGGAGGATGAGA +
Preference number: 4 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNILFPL*SSGRMR
Trigger: TCTCATCCTCCCAGATGACCACAAGGGAAATAAAAT...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CCA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGGAAATTTCAAGAACATaGTGTTCAGTGTTCATGACC +
Preference number: 4 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLEISRT*CSVFMT
Trigger: GGTCATGAACACTGAACACCATGTTCTTGAAATTTC...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
3UTR CAA 72 bp AACACTAGCATACTGAATGACAGAAATTTGGATTCGTaGAATGTATCAGGCAAATTTCTAGACAAGAAGGCC +
Preference number: 4 (lower is better)
Translates to: NTSILNDRNLDS*NVSGKFLDKKA
Trigger: GGCCTTCTTGTCTAGAAATTTGCCTGATACATTCAACGAATCCAAATTTCTGTCATTCAGTATGCTAGTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CAA 72 bp TCCCAGACATTGGAACAAGAAACTAGAACATTGAAGTaGCCTTGGAAACTCCAAAATGTTCAAGATTCTAGA +
Preference number: 4 (lower is better)
Translates to: SQTLEQETRTLK*PWKLQNVQDSR
Trigger: TCTAGAATCTTGAACATTTTGGAGTTTCCAAGGCAACTTCAATGTTCTAGTTTCTTGTTCCAATGTCTGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp ATACATTACATTTACTCATTCAGGAGACAGAACAATGCAGATCTTGGAGTTCAAAAGCAGAGACAAGTTTaGGAATTTGCAATAGCCAGA +
Preference number: 4 (lower is better)
Translates to: IHYIYSFRRQNNADLGVQKQRQV*EFAIAR
Trigger: TCTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTT...TTGAACTCCAAGATCTGCATTGTTCTGTCTCCTGAATGAGTAAATGTAATGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CCA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACGAAATTTCAAGAACATaGTGTTCAGTGTTCATGACC +
Preference number: 4 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNEISRT*CSVFMT
Trigger: GGTCATGAACACTGAACACCATGTTCTTGAAATTTC...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp ACACAGAAGAACACTAGCATACTGAATGACAGAAATTaGGATTCGTTGAATGTATCAGGCAAATTTCTAGAC +
Preference number: 4 (lower is better)
Translates to: TQKNTSILNDRN*DSLNVSGKFLD
Trigger: GTCTAGAAATTTGCCTGATACATTCAACGAATCCAAATTTCTGTCATTCAGTATGCTAGTGTTCTTCTGTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231879.3
3UTR CAA 72 bp ATAGTTCTTCATGCATTTTCTCATAAGTTGTCCACATaGAAATCAGCATGTATATATTGCTGCTCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: IVLHAFSHKLST*KSACIYCCSGS
Trigger: TGAACCAGAGCAGCAATATATACATGCTGATTTCAATGTGGACAACTTATGAGAAAATGCATGAAGAACTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
3UTR CAA 72 bp GAATTTGTAATTTGCCCAGCTAGTTTGTGTCTTGCTTaGGGGATTAAAATTAAGAGTTTGAATGAATCTCAG +
Preference number: 4 (lower is better)
Translates to: EFVICPASLCLA*GIKIKSLNESQ
Trigger: CTGAGATTCATTCAAACTCTTAATTTTAATCCCCAAAGCAAGACACAAACTAGCTGGGCAAATTACAAATTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp GTGGGTAAACCTTCAGAGCCACCACAGAGGGATGGGGAGTGGAAAGAGGAGTTCACAGCTGAGCCCTTGTaGCACAAAAGGATGATGTGT +
Preference number: 5 (lower is better)
Translates to: VGKPSEPPQRDGEWKEEFTAEPL*HKRMMC
Trigger: ACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGT...GAACTCCTCTTTCCACTCCCCATCCCTCTGTGGTGGCTCTGAAGGTTTACCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS TCA 90 bp TGCAATTGTAGCAGCAGATGGCCTTGCCCTCCTGGCTTACTTTCCTaGATCCAGACTGACAACTCTCACTACACACAGATTGAGGGATCT +
Preference number: 5 (lower is better)
Translates to: CNCSSRWPCPPGLLS*IQTDNSHYTQIEGS
Trigger: AGATCCCTCAATCTGTGTGTAGTGAGAGTTGTCAGTCTGGATTCAGGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS GCA 90 bp AGTCTGCAGCTGTCTCATTTGAAATCTCATTCTCTGCACAAGGAGTaGAATTGTAGCAGCAGATGGCCTTGCCCTCCTGGCTTACTTTCC +
Preference number: 5 (lower is better)
Translates to: SLQLSHLKSHSLHKE*NCSSRWPCPPGLLS
Trigger: GGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGCTGCAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS GCA 90 bp GGTCTACATCTGTCTCATTTGAAATCTCATTCTCTGCACAAGGAGTaGAATTGTAGCAGCAGATGGCCTTGCCCTCCTGGCTTACTTTCC +
Preference number: 5 (lower is better)
Translates to: GLHLSHLKSHSLHKE*NCSSRWPCPPGLLS
Trigger: GGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGATGTAGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS CCA 90 bp GCTGGCCATTGTATCATCTGCTCAGATAAGGACAACTGTTGGCCTTaGGGAGCATTTGCAGAAAAGGATCCTACTTTCACTTTTAGTCCA +
Preference number: 5 (lower is better)
Translates to: AGHCIICSDKDNCWP*GAFAEKDPTFTFSP
Trigger: TGGACTAAAAGTGAAAGTAGGATCCTTTTCTGCAAATGCTCCCCAAGGCCAACAGTTGTCCTTATCTGAGCAGATGATACAATGGCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp TGGTACCATCTCTGGGATTCTATACGAAAGCAAGCTGAGCAAGCCAGTGAAAGCAAAGCAGAGACAAGTTaGGGAATTTGCAATAGCCAG +
Preference number: 5 (lower is better)
Translates to: WYHLWDSIRKQAEQASESKAETS*GICNSQ
Trigger: CTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTTT...GCTTTCACTGGCTTGCTCAGCTTGCTTTCGTATAGAATCCCAGAGATGGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp TGGAGAGCAGCTGAGGCTTGGCACTATGAGAAGCCATGGAATACCATTGTTGGGACCATTTTCAAATGGTaGTACTTGAAGTTGCTGAAG +
Preference number: 5 (lower is better)
Translates to: WRAAEAWHYEKPWNTIVGTIFKW*YLKLLK
Trigger: CTTCAGCAACTTCAAGTACAACCATTTGAAAATGGT...CCCAACAATGGTATTCCATGGCTTCTCATAGTGCCAAGCCTCAGCTGCTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATACTCCTCAATGGCAAATaGCAGAGCCAGAATATACTG +
Preference number: 5 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCILLNGK*QSQNIL
Trigger: CAGTATATTCTGGCTCTGCAATTTGCCATTGAGGAG...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAAAAGCTCACAGATTTTaGGAGGCAGTTGTTCCTCTC +
Preference number: 5 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIKAHRF*EAVVPL
Trigger: GAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS TCA 90 bp ATGACTCTCTGGACACTTCACACACTGGTCTACATCTGTCTCATTTaGAATCTCATTCTCTGCACAAGGAGTGCAATTGTAGCAGCAGAT +
Preference number: 5 (lower is better)
Translates to: MTLWTLHTLVYICLI*NLILCTRSAIVAAD
Trigger: ATCTGCTGCTACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS GCA 90 bp CAGAAAGCTCACAGATTTTTGGAGGCAGTTGTTCCTCTCTGTATTTaGATAATGACTCTCTGGACACTTCACACACTGGTCTACATCTGT +
Preference number: 5 (lower is better)
Translates to: QKAHRFLEAVVPLCI*IMTLWTLHTLVYIC
Trigger: ACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CAA 90 bp TTCACCCCCTCCCACAATTCTTCTCACATACAACATCATATTCGCCTCTGCATAAGAATTTTATTTCCCTaGTGGTCATCTGGGAGGATG +
Preference number: 5 (lower is better)
Translates to: FTPSHNSSHIQHHIRLCIRILFP*WSSGRM
Trigger: CATCCTCCCAGATGACCACAAGGGAAATAAAATTCT...TATGCAGAGGCGAATATGATGTTGTATGTGAGAAGAATTGTGGGAGGGGGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp TCCCCATTCTCCTTCTACTGTATGGTAGTAGGTGACTGTATCTTTGCGAGTCATTGTTCCTCTCTGTATTaGCATAATGACTCTCTGGAC +
Preference number: 5 (lower is better)
Translates to: SPFSFYCMVVGDCIFASHCSSLY*HNDSLD
Trigger: GTCCAGAGAGTCATTATGCAAATACAGAGAGGAACA...ATGACTCGCAAAGATACAGTCACCTACTACCATACAGTAGAAGGAGAATGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CAA 90 bp GATATGGAACATAATGAGGCCAACTCCTTTTCTCAGGCAGGGACCCATGTATTTCTACATCTGTCTCATTaGAAATCTCATTCTCTGCAC +
Preference number: 5 (lower is better)
Translates to: DMEHNEANSFSQAGTHVFLHLSH*KSHSLH
Trigger: GTGCAGAGAATGAGATTTCAAATGAGACAGATGTAG...AAATACATGGGTCCCTGCCTGAGAAAAGGAGTTGGCCTCATTATGTTCCATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CAA 90 bp TATTGGGCCCAGAGAGTTGAAAGTACTAATTTGAATATGTTTGGCCAAGGGAGTAAAGCAGAGACAAGTTaGGGAATTTGCAATAGCCAG +
Preference number: 5 (lower is better)
Translates to: YWAQRVESTNLNMFGQGSKAETS*GICNSQ
Trigger: CTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTTT...ACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp AGAACAATGCAGATCTTGGAGTTCAAGAACAATCTACAGAACAAGATCCAGGACAGAATTTTATTTCCCTaGTGGTCATCTGGGAGGATG +
Preference number: 5 (lower is better)
Translates to: RTMQILEFKNNLQNKIQDRILFP*WSSGRM
Trigger: CATCCTCCCAGATGACCACAAGGGAAATAAAATTCT...GTCCTGGATCTTGTTCTGTAGATTGTTCTTGAACTCCAAGATCTGCATTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGCTGCAGCTGTCTCATTaGAAATCTCATTCTCTGCAC +
Preference number: 5 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLLQLSH*KSHSLH
Trigger: GTGCAGAGAATGAGATTTCAAATGAGACAGCTGCAG...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp TCTACTGGCTATTTAACTTTCAGTGTTCCCAATAGATATGGGAGTGTTTGTAACCTCCTCAATGGCAAATaGCAGAGCCAGAATATACTG +
Preference number: 5 (lower is better)
Translates to: STGYLTFSVPNRYGSVCNLLNGK*QSQNIL
Trigger: CAGTATATTCTGGCTCTGCAATTTGCCATTGAGGAG...GTTACAAACACTCCCATATCTATTGGGAACACTGAAAGTTAAATAGCCAGTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp AACAATCTACAGAACAAGATCCAGGACATCCAAGTTTACTCAGTCAAAGTGTTGTGGTTGTACTTGAAGTaGCTGAAGTCTCATCTCATG +
Preference number: 5 (lower is better)
Translates to: NNLQNKIQDIQVYSVKVLWLYLK*LKSHLM
Trigger: CATGAGATGAGACTTCAGCAACTTCAAGTACAACCA...CAACACTTTGACTGAGTAAACTTGGATGTCCTGGATCTTGTTCTGTAGATTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp TATTGGGCCCAGAGAGTTGAAAGTACTAATTTGAATATGTTTGGCCAAGGGAGTGGATCTCTGAAAATATaGCTGGCCATTGTATCATCT +
Preference number: 5 (lower is better)
Translates to: YWAQRVESTNLNMFGQGSGSLKI*LAIVSS
Trigger: AGATGATACAATGGCCAGCAATATTTTCAGAGATCC...ACTCCCTTGGCCAAACATATTCAAATTAGTACTTTCAACTCTCTGGGCCCAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS-3UTR CAA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATAAAGCAGAGACAAGTTaGGGAATTTGCAATAGCCAG +
Preference number: 5 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDKAETS*GICNSQ
Trigger: CTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTTT...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATAGAATTTTATTTCCCTaGTGGTCATCTGGGAGGATG +
Preference number: 5 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDRILFP*WSSGRM
Trigger: CATCCTCCCAGATGACCACAAGGGAAATAAAATTCT...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp TCTATGCATTTCTTAAAATCTACAATGCAAGGGATTCTTCAAGTAGGCCCAGATTGGTTGTACTTGAAGTaGCTGAAGTCTCATCTCATG +
Preference number: 5 (lower is better)
Translates to: SMHFLKSTMQGILQVGPDWLYLK*LKSHLM
Trigger: CATGAGATGAGACTTCAGCAACTTCAAGTACAACCA...ATCTGGGCCTACTTGAAGAATCCCTTGCATTGTAGATTTTAAGAAATGCATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTGGATCTCTGAAAATATaGCTGGCCATTGTATCATCT +
Preference number: 5 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGGSLKI*LAIVSS
Trigger: AGATGATACAATGGCCAGCAATATTTTCAGAGATCC...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS-3UTR CAA 90 bp AGATTTATGTGTGAATATGAACTTCACTCTTTAGAAGGTTTGGAGACTGTACTGTGGTTGTACTTGAAGTaGCTGAAGTCTCATCTCATG +
Preference number: 5 (lower is better)
Translates to: RFMCEYELHSLEGLETVLWLYLK*LKSHLM
Trigger: CATGAGATGAGACTTCAGCAACTTCAAGTACAACCA...CAGTACAGTCTCCAAACCTTCTAAAGAGTGAAGTTCATATTCACACATAAATCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp GGCCCTGACATTTTTCTATACTGGAGCATAGAACTTTCTCAGTTTCTTAATGGTACCATTTTCAAATGGTaGTACTTGAAGTTGCTGAAG +
Preference number: 5 (lower is better)
Translates to: GPDIFLYWSIELSQFLNGTIFKW*YLKLLK
Trigger: CTTCAGCAACTTCAAGTACAACCATTTGAAAATGGT...ACCATTAAGAAACTGAGAAAGTTCTATGCTCCAGTATAGAAAAATGTCAGGGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp CCACTAGATTCATGTCCAAAGACCAAAGTCTTTAAGTGCTCAGTTTCCTTTTTGACCATTTTCAAATGGTaGTACTTGAAGTTGCTGAAG +
Preference number: 5 (lower is better)
Translates to: PLDSCPKTKVFKCSVSFLTIFKW*YLKLLK
Trigger: CTTCAGCAACTTCAAGTACAACCATTTGAAAATGGT...CAAAAAGGAAACTGAGCACTTAAAGACTTTGGTCTTTGGACATGAATCTAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
CDS-3UTR CAA 90 bp AGCAGAAAAGGCAGTATATATAGTAAATTCCTGGGGAAGTTTAGGAAAGTGCACAATGAAACTCAGACCTaGATTATTGGCCTTGACAAT +
Preference number: 5 (lower is better)
Translates to: SRKGSIYSKFLGKFRKVHNETQT*IIGLDN
Trigger: ATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCATT...GTGCACTTTCCTAAACTTCCCCAGGAATTTACTATATATACTGCCTTTTCTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS TCA 90 bp CTACTTTCACTTTTAGTCCAAGCCCCTTTGGTAAATTCCAAAGGTTaGGAATGTCATATTCCACATCTATTGTCTGTCTCCAATATAAAC +
Preference number: 5 (lower is better)
Translates to: LLSLLVQAPLVNSKG*ECHIPHLLSVSNIN
Trigger: GTTTATATTGGAGACAGACAATAGATGTGGAATATGACATTCTCAACCTTTGGAATTTACCAAAGGGGCTTGGACTAAAAGTGAAAGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp AGCAGCAGATGGCCTTGCCCTCCTGGCTTACTTTCCTaGATCCAGACTGACAACTCTCACTACACACAGATT +
Preference number: 6 (lower is better)
Translates to: SSRWPCPPGLLS*IQTDNSHYTQI
Trigger: AATCTGTGTGTAGTGAGAGTTGTCAGTCTGGATTCAGGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS GCA 72 bp CTGTCTCATTTGAAATCTCATTCTCTGCACAAGGAGTaGAATTGTAGCAGCAGATGGCCTTGCCCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: LSHLKSHSLHKE*NCSSRWPCPPG
Trigger: GCCAGGAGGGCAAGGCCATCTGCTGCTACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS CAA 90 bp AAGCTGCCATGGAAAGAACACCATCCCTTCACCATTTTCAAATGGTaGTACTTGAAGTTGCTGAAGTCTCATCTCATGGAGGCTGTGAGC +
Preference number: 6 (lower is better)
Translates to: KLPWKEHHPFTIFKW*YLKLLKSHLMEAVS
Trigger: GCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAGTACAACCATTTGAAAATGGTGAAGGGATGGTGTTCTTTCCATGGCAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 72 bp CATCCCTTCACCATTTTCAAATGGTTGTACTTGAAGTaGCTGAAGTCTCATCTCATGGAGGCTGTGAGCCAG +
Preference number: 6 (lower is better)
Translates to: HPFTIFKWLYLK*LKSHLMEAVSQ
Trigger: CTGGCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAGTACAACCATTTGAAAATGGTGAAGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp CAGAATCAGTTCAAGACCACCTACCCCCTTCAACACTaGAGGGACTTTCAGAAACATAGCTGTCAAAATGAC +
Preference number: 6 (lower is better)
Translates to: QNQFKTTYPLQH*RDFQKHSCQND
Trigger: GTCATTTTGACAGCTATGTTTCTGAAAGTCCCTTCAGTGTTGAAGGGGGTAGGTGGTCTTGAACTGATTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231938.2
CDS CCA 72 bp TGTATCATCTGCTCAGATAAGGACAACTGTTGGCCTTaGGGAGCATTTGCAGAAAAGGATCCTACTTTCACT +
Preference number: 6 (lower is better)
Translates to: CIICSDKDNCWP*GAFAEKDPTFT
Trigger: AGTGAAAGTAGGATCCTTTTCTGCAAATGCTCCCCAAGGCCAACAGTTGTCCTTATCTGAGCAGATGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 72 bp GAACACCATCCCTTCACCATTTTCAAATGGTTGTACTaGAAGTTGCTGAAGTCTCATCTCATGGAGGCTGTG +
Preference number: 6 (lower is better)
Translates to: EHHPFTIFKWLY*KLLKSHLMEAV
Trigger: CACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAGTACAACCATTTGAAAATGGTGAAGGGATGGTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 90 bp ACTGACAACTCTCACTACACACAGATTGAGGGATCTCTGAAAATATaGCTGGCCATTGTATCATCTGCTCAGATAAGGACAACTGTTGGC +
Preference number: 6 (lower is better)
Translates to: TDNSHYTQIEGSLKI*LAIVSSAQIRTTVG
Trigger: GCCAACAGTTGTCCTTATCTGAGCAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAATCTGTGTGTAGTGAGAGTTGTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS TCA 72 bp CTGACAACTCTCACTACACACAGATTGAGGGATCTCTaGAAATATTGCTGGCCATTGTATCATCTGCTCAGA +
Preference number: 6 (lower is better)
Translates to: LTTLTTHRLRDL*KYCWPLYHLLR
Trigger: TCTGAGCAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAATCTGTGTGTAGTGAGAGTTGTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS CCA 72 bp GCAGTTGTTCCTCTCTGTATTTGCATAATGACTCTCTaGACACTTCACACACTGGTCTACATCTGTCTCATT +
Preference number: 6 (lower is better)
Translates to: AVVPLCICIMTL*TLHTLVYICLI
Trigger: AATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAGGAACAACTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS CAA 72 bp CTGGACACTTCACACACTGGTCTACATCTGTCTCATTaGAAATCTCATTCTCTGCACAAGGAGTGCAATTGT +
Preference number: 6 (lower is better)
Translates to: LDTSHTGLHLSH*KSHSLHKECNC
Trigger: ACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS CAA 90 bp TTCCTCTCCATCTCCTCCCTAAAATCTGATAGAATTTTATTTCCCTaGTGGTCATCTGGGAGGATGAGACCAACCCACAACCATCTAAAA +
Preference number: 6 (lower is better)
Translates to: FLSISSLKSDRILFP*WSSGRMRPTHNHLK
Trigger: TTTTAGATGGTTGTGGGTTGGTCTCATCCTCCCAGATGACCACAAGGGAAATAAAATTCTATCAGATTTTAGGGAGGAGATGGAGAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp CAAGAGATATGTTGGGTAAAAGATTGGGGTTCCCATTaGTCTCCTCAATGGCAAATTGCAGAGCCAGAATAT +
Preference number: 6 (lower is better)
Translates to: QEICWVKDWGSH*SPQWQIAEPEY
Trigger: ATATTCTGGCTCTGCAATTTGCCATTGAGGAGATCAATGGGAACCCCAATCTTTTACCCAACATATCTCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp TCTGGGAGGATGAGACCAACCCACAACCATCTAAAATaGACAATCAAGGAAACAATGGCAAGTGTAAGAGAT +
Preference number: 6 (lower is better)
Translates to: SGRMRPTHNHLK*TIKETMASVRD
Trigger: ATCTCTTACACTTGCCATTGTTTCCTTGATTGTTCATTTTAGATGGTTGTGGGTTGGTCTCATCCTCCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp TGGACACTTCACACACTGGTCTACATCTGTCTCATTTaGAATCTCATTCTCTGCACAAGGAGTGCAATTGTA +
Preference number: 6 (lower is better)
Translates to: WTLHTLVYICLI*NLILCTRSAIV
Trigger: TACAATTGCACTCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079206.8
CDS CAA 72 bp TGGAAAGAACACCATCCCTTCACCATTTTCAAATGGTaGTACTTGAAGTTGCTGAAGTCTCATCTCATGGAG +
Preference number: 6 (lower is better)
Translates to: WKEHHPFTIFKW*YLKLLKSHLME
Trigger: CTCCATGAGATGAGACTTCAGCAACTTCAAGTACAACCATTTGAAAATGGTGAAGGGATGGTGTTCTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 72 bp TCTCACTACACACAGATTGAGGGATCTCTGAAAATATaGCTGGCCATTGTATCATCTGCTCAGATAAGGACA +
Preference number: 6 (lower is better)
Translates to: SHYTQIEGSLKI*LAIVSSAQIRT
Trigger: TGTCCTTATCTGAGCAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAATCTGTGTGTAGTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079206.8
ENSMUST00000231938.2
CDS TCA 72 bp CTTTTAGTCCAAGCCCCTTTGGTAAATTCCAAAGGTTaGGAATGTCATATTCCACATCTATTGTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: LLVQAPLVNSKG*ECHIPHLLSVS
Trigger: GGAGACAGACAATAGATGTGGAATATGACATTCTCAACCTTTGGAATTTACCAAAGGGGCTTGGACTAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS TCA 72 bp AATCAGAAATTTCAAGAACATGGTGTTCAGTGTTCATaGCCCAGACAATCCATGTCAATAACCTTTGCCCAA +
Preference number: 6 (lower is better)
Translates to: NQKFQEHGVQCS*PRQSMSITFAQ
Trigger: TTGGGCAAAGGTTATTGACATGGATTGTCTGGGTCATGAACACTGAACACCATGTTCTTGAAATTTCTGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS GCA 72 bp GTGTTCATGACCCAGACAATCCATGTCAATAACCTTTaGCCAATATTTCTCATTAGACCTTCTAGAGAATCA +
Preference number: 6 (lower is better)
Translates to: VFMTQTIHVNNL*PIFLIRPSRES
Trigger: TGATTCTCTAGAAGGTCTAATGAGAAATATTGGGCAAAGGTTATTGACATGGATTGTCTGGGTCATGAACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 72 bp ACTTTTAGTCCAAGCCCCTTTGGTAAATTCCAAAGGTaGAGAATGTCATATTCCACATCTATTGTCTGTCTC +
Preference number: 6 (lower is better)
Translates to: TFSPSPFGKFQR*RMSYSTSIVCL
Trigger: GAGACAGACAATAGATGTGGAATATGACATTCTCAACCTTTGGAATTTACCAAAGGGGCTTGGACTAAAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 90 bp CCTACTTTCACTTTTAGTCCAAGCCCCTTTGGTAAATTCCAAAGGTaGAGAATGTCATATTCCACATCTATTGTCTGTCTCCAATATAAA +
Preference number: 6 (lower is better)
Translates to: PTFTFSPSPFGKFQR*RMSYSTSIVCLQYK
Trigger: TTTATATTGGAGACAGACAATAGATGTGGAATATGACATTCTCAACCTTTGGAATTTACCAAAGGGGCTTGGACTAAAAGTGAAAGTAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2
CDS CAA 72 bp ATTATTACATTTGTCTCATCCATATTTTTCCAGAATTaGGCAAAGTATGAAGTCCATGTGGCTGGGATCATT +
Preference number: 6 (lower is better)
Translates to: IITFVSSIFFQN*AKYEVHVAGII
Trigger: AATGATCCCAGCCACATGGACTTCATACTTTGCCAAATTCTGGAAAAATATGGATGAGACAAATGTAATAAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079206.8
ENSMUST00000231879.3
ENSMUST00000231938.2