RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091624

Ensembl transcript IDs: ENSMUST00000170419.3, ENSMUST00000233198.2, ENSMUST00000233547.2, ENSMUST00000233835.2

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTGGTTATGGGAGGAGTAAATTTGGGGGAGGGGTCAGTCTAGACTaGGCAAACAACTCCTGGGACAGAGGTTTCCACACACTTTCACCT +
Preference number: 1 (lower is better)
Translates to: IGYGRSKFGGGVSLD*ANNSWDRGFHTLSP
Trigger: AGGTGAAAGTGTGTGGAAACCTCTGTCCCAGGAGTTGTTTGCTCAGTCTAGACTGACCCCTCCCCCAAATTTACTCCTCCCATAACCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 90 bp TTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCTCAGTGACTaGCAGCACAGAGGGCTGCAGTACTACTCAGTTTCTTACTCTTCT +
Preference number: 1 (lower is better)
Translates to: FFNTTDSKTTSSLSD*QHRGLQYYSVSYSS
Trigger: AGAAGAGTAAGAAACTGAGTAGTACTGCAGCCCTCTGTGCTGTCAGTCACTGAGGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 90 bp GAAATGAGAGTTTTGATGGTAATTGAGGTGAGTTCAGCTAGAGCTTaGGAAGAGCTGTGGGACCTCTACTCATGCATCTGTAAGAGCACT +
Preference number: 1 (lower is better)
Translates to: EMRVLMVIEVSSARA*EELWDLYSCICKST
Trigger: AGTGCTCTTACAGATGCATGAGTAGAGGTCCCACAGCTCTTCTCAAGCTCTAGCTGAACTCACCTCAATTACCATCAAAACTCTCATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 90 bp TTCCTAGCAACCACACGATGGTTAACAACCATCTGTAATGGGATCTaGTGCTCTATTCAGGTGTGTGTGAACAGTGACAGTGTACTCACA +
Preference number: 1 (lower is better)
Translates to: FLATTRWLTTICNGI*CSIQVCVNSDSVLT
Trigger: TGTGAGTACACTGTCACTGTTCACACACACCTGAATAGAGCATCAGATCCCATTACAGATGGTTGTTAACCATCGTGTGGTTGCTAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR CCA 90 bp GTGTCAGTGTATCTGAGTTTGCTTCTCAGTGTCTGCCTTTCTGTCTaGGAGCCTGTCCTCAGCAAATCACTGATATTTGAATCCTTGAAT +
Preference number: 1 (lower is better)
Translates to: VSVYLSLLLSVCLSV*EPVLSKSLIFESLN
Trigger: ATTCAAGGATTCAAATATCAGTGATTTGCTGAGGACAGGCTCCCAGACAGAAAGGCAGACACTGAGAAGCAAACTCAGATACACTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 90 bp GAAGGATTACTGCACTGTGCATGGCAGCATGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACACAACCGTTTACAGAAGACTGTAAAT +
Preference number: 1 (lower is better)
Translates to: EGLLHCAWQHGRKKA*KASTLHNRLQKTVN
Trigger: ATTTACAGTCTTCTGTAAACGGTTGTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAGTGCAGTAATCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 90 bp ATGTTTGTTACATTAGAGACAAAGTCAGGAAGTGGGAACCAACCTTaGCAAAACACCTGCAGCAAGTCAGTGACATACCAGGTGCTTTTT +
Preference number: 1 (lower is better)
Translates to: MFVTLETKSGSGNQP*QNTCSKSVTYQVLF
Trigger: AAAAAGCACCTGGTATGTCACTGACTTGCTGCAGGTGTTTTGTCAAGGTTGGTTCCCACTTCCTGACTTTGTCTCTAATGTAACAAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 90 bp ATTACAGTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTaGCTTTGTTCAGATTCCTTTATCCCTAACTATATGCCACTCCAC +
Preference number: 1 (lower is better)
Translates to: ITVMLHYQKWRAVSS*LCSDSFIPNYMPLH
Trigger: GTGGAGTGGCATATAGTTAGGGATAAAGGAATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTACTGTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 90 bp GAAGTCAAGACAAGAACTTGGATGCAGACAGTCAATGAGAGCACATaGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTTTA +
Preference number: 1 (lower is better)
Translates to: EVKTRTWMQTVNEST*NNADYWLHSSLCSL
Trigger: TAAAGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATTGACTGTCTGCATCCAAGTTCTTGTCTTGACTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 90 bp AAGAAAGGCATCAAAGGTTCTATGTACAGCCCTCTTTCAGTTCTCTaGGTTATAAAGTTAGAAGTGGTCATTGGTTCACCCAAGTTCCTA +
Preference number: 1 (lower is better)
Translates to: KKGIKGSMYSPLSVL*VIKLEVVIGSPKFL
Trigger: TAGGAACTTGGGTGAACCAATGACCACTTCTAACTTTATAACCCAGAGAACTGAAAGAGGGCTGTACATAGAACCTTTGATGCCTTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 90 bp CAACCGTTTACAGAAGACTGTAAATCTCCTGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGAAACAAATATTGGCCAGTTCGTACC +
Preference number: 1 (lower is better)
Translates to: QPFTEDCKSPVKNGR*VITREGNKYWPVRT
Trigger: GGTACGAACTGGCCAATATTTGTTTCCTTCCCTGGTTATAACTCATCTTCCATTCTTTACAGGAGATTTACAGTCTTCTGTAAACGGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 90 bp CTGTGTTTAGCCTTAATGAGAAAAACATCCTTCGATGCCTGGCTCTaGGGTCATCTCCTCAACTTTCTGAATGGATACATTTTTATGAGT +
Preference number: 1 (lower is better)
Translates to: LCLALMRKTSFDAWL*GHLLNFLNGYIFMS
Trigger: ACTCATAAAAATGTATCCATTCAGAAAGTTGAGGAGATGACCTCAGAGCCAGGCATCGAAGGATGTTTTTCTCATTAAGGCTAAACACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 90 bp ACCAGTGATAAGATATGGAAGGAGACACAGCACACAGTTCATATGTaGTCTTGTTGTATCTATGGGACCTTGGACATAATCAAGTTTTCA +
Preference number: 1 (lower is better)
Translates to: TSDKIWKETQHTVHM*SCCIYGTLDIIKFS
Trigger: TGAAAACTTGATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGTGTGCTGTGTCTCCTTCCATATCTTATCACTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 90 bp AATATGATGGTGAAATTACTGAGTGCTTACATCTTTCTCAGAAGATaGGTGAAGCTCACCTATGTAGCAATGTGTTTCTATCCTGGAGCA +
Preference number: 1 (lower is better)
Translates to: NMMVKLLSAYIFLRR*VKLTYVAMCFYPGA
Trigger: TGCTCCAGGATAGAAACACATTGCTACATAGGTGAGCTTCACCCATCTTCTGAGAAAGATGTAAGCACTCAGTAATTTCACCATCATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR GCA 90 bp TCTGTGCTCTTTATAGTCTTCTTTCTTATAACTCCCATAACAATTTaGCTCTATAATTGGCATTATATTAGGCAGTGCTGTGCTGCCCTA +
Preference number: 1 (lower is better)
Translates to: SVLFIVFFLITPITI*LYNWHYIRQCCAAL
Trigger: TAGGGCAGCACAGCACTGCCTAATATAATGCCAATTATAGAGGCAAATTGTTATGGGAGTTATAAGAAAGAAGACTATAAAGAGCACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 90 bp CTTTCTGAATGGATACATTTTTATGAGTCTACCAGTGATAAGATATaGAAGGAGACACAGCACACAGTTCATATGTGCTCTTGTTGTATC +
Preference number: 1 (lower is better)
Translates to: LSEWIHFYESTSDKI*KETQHTVHMCSCCI
Trigger: GATACAACAAGAGCACATATGAACTGTGTGCTGTGTCTCCTTCCATATCTTATCACTGGTAGACTCATAAAAATGTATCCATTCAGAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 90 bp ATAGTCTTCTTTCTTATAACTCCCATAACAATTTGCCTCTATAATTaGCATTATATTAGGCAGTGCTGTGCTGCCCTACATTATAAGTAC +
Preference number: 1 (lower is better)
Translates to: IVFFLITPITICLYN*HYIRQCCAALHYKY
Trigger: GTACTTATAATGTAGGGCAGCACAGCACTGCCTAATATAATGCCAATTATAGAGGCAAATTGTTATGGGAGTTATAAGAAAGAAGACTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 90 bp TCTGTCTGGGAGCCTGTCCTCAGCAAATCACTGATATTTGAATCCTaGAATCAGGCTTCTGGCCCAGAGAGCTCTAAATCCAGGGCATTG +
Preference number: 2 (lower is better)
Translates to: SVWEPVLSKSLIFES*NQASGPESSKSRAL
Trigger: CAATGCCCTGGATTTAGAGCTCTCTGGGCCAGAAGCCTGATTCAAGGATTCAAATATCAGTGATTTGCTGAGGACAGGCTCCCAGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACGTGAAAAGACCCATGTaGGAAGAGCCTTATTCCCCT +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHVKRPM*EEPYSP
Trigger: AGGGGAATAAGGCTCTTCTCACATGGGTCTTTTCAC...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACAATCTAGGGCTTCTGTaGTGGCCATCAACAACATGC +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHNLGLL*WPSTTC
Trigger: GCATGTTGTTGATGGCCATCACAGAAGCCCTAGATT...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACCCGAGGTCTCTTCCTTaGAATGGAGCAGTTAAAGGT +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHPRSLP*NGAVKG
Trigger: ACCTTTAACTGCTCCATTTCAAGGAAGAGACCTCGG...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAATCCTCCCTCAGTGACTaGCAGCACAGAGGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKSSLSD*QHRGLQ
Trigger: CTGCAGCCCTCTGTGCTGTCAGTCACTGAGGGAGGA...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATAACTTCCTCCCTCAGTaGCTGACAGCACAGAGGGCT +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDNFLPQ*LTAQRA
Trigger: AGCCCTCTGTGCTGTCAGTCACTGAGGGAGGAAGTT...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATTCACTGAGGACACACTaGGCAGACACTGGTGTCTCC +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDSLRTH*ADTGVS
Trigger: GGAGACACCAGTGTCTGCTCAGTGTGTCCTCAGTGA...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACTGGCCATCAACAACATaGAACACTGTAACTACGCTC +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHWPSTT*NTVTTL
Trigger: GAGCGTAGTTACAGTGTTGCATGTTGTTGATGGCCA...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACCCAGAAATGCAGTGGTaGTTAAAGAGGAGGCTCTGC +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHPEMQW*LKRRLC
Trigger: GCAGAGCCTCCTCTTTAATCACCACTGCATTTCTGG...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGTGAAAAGACCCATGTaGGAAGAGCCTTATTCCCCT +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSVKRPM*EEPYSP
Trigger: AGGGGAATAAGGCTCTTCTCACATGGGTCTTTTCAC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAATCTAGGGCTTCTGTaGTGGCCATCAACAACATGC +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHNLGLL*WPSTTC
Trigger: GCATGTTGTTGATGGCCATCACAGAAGCCCTAGATT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTCCGAGGTCTCTTCCTTaGAATGGAGCAGTTAAAGGT +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSPRSLP*NGAVKG
Trigger: ACCTTTAACTGCTCCATTTCAAGGAAGAGACCTCGG...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACCATTATAATCACTGCTaGATAATGCAGACCTCTGGA +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHHYNHC*IMQTSG
Trigger: TCCAGAGGTCTGCATTATTCAGCAGTGATTATAATG...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAAACTTCCTCCCTCAGTaGCTGACAGCACAGAGGGCT +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKNFLPQ*LTAQRA
Trigger: AGCCCTCTGTGCTGTCAGTCACTGAGGGAGGAAGTT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACATCTTTCTCAGAAGATaGGTGAAGCTCACCTATGTA +
Preference number: 2 (lower is better)
Translates to: TFPFLKGLELKARLLVHHIFLRR*VKLTYV
Trigger: TACATAGGTGAGCTTCACCCATCTTCTGAGAAAGAT...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CCCACATCACTCTCCTCTGAACACAGGAAGATCTTTCAGTTTCATCAGTTTCCAACTCTAGTGTCCCAGTaGTTTTTCAGCTCCATGCCA +
Preference number: 2 (lower is better)
Translates to: PTSLSSEHRKIFQFHQFPTLVSQ*FFSSMP
Trigger: TGGCATGGAGCTGAAAAACCACTGGGACACTAGAGT...TGGAAACTGATGAAACTGAAAGATCTTCCTGTGTTCAGAGGAGAGTGATGTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATGTGAAAAGACCCATGTaGGAAGAGCCTTATTCCCCT +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDVKRPM*EEPYSP
Trigger: AGGGGAATAAGGCTCTTCTCACATGGGTCTTTTCAC...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATAATCTAGGGCTTCTGTaGTGGCCATCAACAACATGC +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDNLGLL*WPSTTC
Trigger: GCATGTTGTTGATGGCCATCACAGAAGCCCTAGATT...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAAGTTCAGCTAGAGCTTaGGAAGAGCTGTGGGACCTC +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKSSARA*EELWDL
Trigger: GAGGTCCCACAGCTCTTCTCAAGCTCTAGCTGAACT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp CTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAAGATGGTGGGCTGAAGAAGGATTACTaGACTGTGCATGGCAGCATG +
Preference number: 2 (lower is better)
Translates to: LRKYSLIQGSGNSKEDGGLKKDY*TVHGSM
Trigger: CATGCTGCCATGCACAGTGCAGTAATCCTTCTTCAG...CCCACCATCTTCTTTACTATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATCTGAAGAAGGATTACTaGACTGTGCATGGCAGCATG +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDLKKDY*TVHGSM
Trigger: CATGCTGCCATGCACAGTGCAGTAATCCTTCTTCAG...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACCTGTGCATGGCAGCATaGAAGGAAGAAAGCTTGAAA +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHLCMAA*KEESLK
Trigger: TTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAG...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAAGAAATCGATGTGGTaGCAGTGTGGTGAACATAGA +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHKKSMW*QCGEHR
Trigger: TCTATGTTCACCACACTGTCACCACATCGATTTCTT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATCTATTCAGGTGTGTGTaGACAGTGACAGTGTACTCA +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDLFRCV*TVTVYS
Trigger: TGAGTACACTGTCACTGTTCACACACACCTGAATAG...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAACCAGAAATGCAGTGGTaGTTAAAGAGGAGGCTCTGC +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKPEMQW*LKRRLC
Trigger: GCAGAGCCTCCTCTTTAATCACCACTGCATTTCTGG...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTAGTGGGAACCAACCTTaGCAAAACACCTGCAGCAAG +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTSGNQP*QNTCSK
Trigger: CTTGCTGCAGGTGTTTTGTCAAGGTTGGTTCCCACT...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAAGACAAGAACTTGGATaGAGACAGTCAATGAGAGCA +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKRQELG*RQSMRA
Trigger: TGCTCTCATTGACTGTCTGCATCCAAGTTCTTGTCT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATTGGCCATCAACAACATaGAACACTGTAACTACGCTC +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDWPSTT*NTVTTL
Trigger: GAGCGTAGTTACAGTGTTGCATGTTGTTGATGGCCA...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGTGATAGTTATTGCATaGGCATTCAGGTGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSVIVIA*AFRWRK
Trigger: TTTCCTCCACCTGAATGCGCATGCAATAACTATCAC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTGACAGCACAGAGGGCTaGAGTACTACTCAGTTTCTT +
Preference number: 2 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFDSTEG*STTQFL
Trigger: AAGAAACTGAGTAGTACTGCAGCCCTCTGTGCTGTC...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACGTCAAGACAAGAACTTaGATGCAGACAGTCAATGAG +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHVKTRT*MQTVNE
Trigger: CTCATTGACTGTCTGCATCCAAGTTCTTGTCTTGAC...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGTCAAGACAAGAACTTaGATGCAGACAGTCAATGAG +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSVKTRT*MQTVNE
Trigger: CTCATTGACTGTCTGCATCCAAGTTCTTGTCTTGAC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp TTCTGTCGAGGTCTCCTCTACTTTGGTAACCCAGTTTCCTTCACTTACTTTTTCCTGTGCATGGCAGCATaGAAGGAAGAAAGCTTGAAA +
Preference number: 2 (lower is better)
Translates to: FCRGLLYFGNPVSFTYFFLCMAA*KEESLK
Trigger: TTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAG...GAAAAAGTAAGTGAAGGAAACTGGGTTACCAAAGTAGAGGAGACCTCGACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CCCACATCACTCTCCTCTGAACACAGGAAGATCTTTCAGTTTCATCAGTTTCCAGCATGCGCATTCAGGTaGAGGAAACAATTCAATGTA +
Preference number: 2 (lower is better)
Translates to: PTSLSSEHRKIFQFHQFPACAFR*RKQFNV
Trigger: TACATTGAATTGTTTCCTCCACCTGAATGCGCATGC...TGGAAACTGATGAAACTGAAAGATCTTCCTGTGTTCAGAGGAGAGTGATGTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAGCATGCGCATTCAGGTaGAGGAAACAATTCAATGTA +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKACAFR*RKQFNV
Trigger: TACATTGAATTGTTTCCTCCACCTGAATGCGCATGC...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp CCCACATCACTCTCCTCTGAACACAGGAAGATCTTTCAGTTTCATCAGTTTCCAATCAAAACACAATGGTaGAAAGACCCATGTGAGAAG +
Preference number: 2 (lower is better)
Translates to: PTSLSSEHRKIFQFHQFPIKTQW*KDPCEK
Trigger: CTTCTCACATGGGTCTTTTCACCATTGTGTTTTGAT...TGGAAACTGATGAAACTGAAAGATCTTCCTGTGTTCAGAGGAGAGTGATGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAAATCTAGGGCTTCTGTaGTGGCCATCAACAACATGC +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKNLGLL*WPSTTC
Trigger: GCATGTTGTTGATGGCCATCACAGAAGCCCTAGATT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSVKNGR*VITREG
Trigger: TCCTTCCCTGGTTATAACTCATCTTCCATTCTTTAC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHVKNGR*VITREG
Trigger: TCCTTCCCTGGTTATAACTCATCTTCCATTCTTTAC...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACAC +
Preference number: 2 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFGRKKA*KASTLH
Trigger: GTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCC...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCCCGAGGTCTCTTCCTTaGAATGGAGCAGTTAAAGGT +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPPRSLP*NGAVKG
Trigger: ACCTTTAACTGCTCCATTTCAAGGAAGAGACCTCGG...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAAGTCAGACTTGGTGTTaGACAGAATTTAAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKSQTWC*TEFKGV
Trigger: CACTCCTTTAAATTCTGTTCAACACCAAGTCTGACT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATAGACAAGAACTTGGATaGAGACAGTCAATGAGAGCA +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDRQELG*RQSMRA
Trigger: TGCTCTCATTGACTGTCTGCATCCAAGTTCTTGTCT...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTCTGTGCATGGCAGCATaGAAGGAAGAAAGCTTGAAA +
Preference number: 2 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFLCMAA*KEESLK
Trigger: TTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAG...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATGCATGCGCATTCAGGTaGAGGAAACAATTCAATGTA +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDACAFR*RKQFNV
Trigger: TACATTGAATTGTTTCCTCCACCTGAATGCGCATGC...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTATCTTTCTCAGAAGATaGGTGAAGCTCACCTATGTA +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSIFLRR*VKLTYV
Trigger: TACATAGGTGAGCTTCACCCATCTTCTGAGAAAGAT...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTCTAGCAACCACACGATaGTTAACAACCATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSLATTR*LTTICN
Trigger: ATTACAGATGGTTGTTAACCATCGTGTGGTTGCTAG...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATTGCAACAGTAATCTGTaGTATTCCAAATCCCAACCA +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDCNSNL*YSKSQP
Trigger: TGGTTGGGATTTGGAATATCACAGATTACTGTTGCA...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp CTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAAGATGGTGGGGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: LRKYSLIQGSGNSKEDGGVKNGR*VITREG
Trigger: TCCTTCCCTGGTTATAACTCATCTTCCATTCTTTAC...CCCACCATCTTCTTTACTATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACAC +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTGRKKA*KASTLH
Trigger: GTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCC...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACAC +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPGRKKA*KASTLH
Trigger: GTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCC...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATCATTATAATCACTGCTaGATAATGCAGACCTCTGGA +
Preference number: 2 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDHYNHC*IMQTSG
Trigger: TCCAGAGGTCTGCATTATTCAGCAGTGATTATAATG...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTAAGGCTTTCCTATGCTaGGCTTGCTGTAGTTCCTTT +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTKAFLC*ACCSSF
Trigger: AAAGGAACTACAGCAAGCTCAGCATAGGAAAGCCTT...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCTGGCCATCAACAACATaGAACACTGTAACTACGCTC +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPWPSTT*NTVTTL
Trigger: GAGCGTAGTTACAGTGTTGCATGTTGTTGATGGCCA...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAATAATGCTGATTACTaGCTTCATTCTAGTCTGTGC +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHNNADY*LHSSLC
Trigger: GCACAGACTAGAATGAAGCCAGTAATCAGCATTATT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCTGTGCATGGCAGCATaGAAGGAAGAAAGCTTGAAA +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTLCMAA*KEESLK
Trigger: TTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTGAAAAGACCCATGTaGGAAGAGCCTTATTCCCCT +
Preference number: 2 (lower is better)
Translates to: TIQCILLENIPSSKAQGIVKRPM*EEPYSP
Trigger: AGGGGAATAAGGCTCTTCTCACATGGGTCTTTTCAC...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCAAGAAATCGATGTGGTaGCAGTGTGGTGAACATAGA +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPKKSMW*QCGEHR
Trigger: TCTATGTTCACCACACTGTCACCACATCGATTTCTT...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATACTGAAGAAGGATTACTaGACTGTGCATGGCAGCATG +
Preference number: 2 (lower is better)
Translates to: TIQCILLENIPSSKAQGILKKDY*TVHGSM
Trigger: CATGCTGCCATGCACAGTGCAGTAATCCTTCTTCAG...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAGTGATAGTTATTGCATaGGCATTCAGGTGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKVIVIA*AFRWRK
Trigger: TTTCCTCCACCTGAATGCGCATGCAATAACTATCAC...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAATTTGCCTCTATAATTaGCATTATATTAGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKICLYN*HYIRQC
Trigger: GCACTGCCTAATATAATGCCAATTATAGAGGCAAAT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTGTCAATGAGAGCACATaGAATAATGCTGATTACTGG +
Preference number: 2 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFVNEST*NNADYW
Trigger: CCAGTAATCAGCATTATTCCATGTGCTCTCATTGAC...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTGTCAAGACAAGAACTTaGATGCAGACAGTCAATGAG +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTVKTRT*MQTVNE
Trigger: CTCATTGACTGTCTGCATCCAAGTTCTTGTCTTGAC...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTATCTCCTGTAAAGAATaGAAGATGAGTTATAACCAG +
Preference number: 2 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSISCKE*KMSYNQ
Trigger: CTGGTTATAACTCATCTTCCATTCTTTACAGGAGAT...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAATCTCCTGTAAAGAATaGAAGATGAGTTATAACCAG +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKISCKE*KMSYNQ
Trigger: CTGGTTATAACTCATCTTCCATTCTTTACAGGAGAT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTGCATGCGCATTCAGGTaGAGGAAACAATTCAATGTA +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTACAFR*RKQFNV
Trigger: TACATTGAATTGTTTCCTCCACCTGAATGCGCATGC...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAATGTGTTTCTATCCTaGAGCATAAAGAAATCGATG +
Preference number: 2 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHNVFLS*SIKKSM
Trigger: CATCGATTTCTTTATGCTCCAGGATAGAAACACATT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAATTTGCAGTATCTTTGTaGTCTGTGTTTAGCCTTAAT +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKFAVSL*SVFSLN
Trigger: ATTAAGGCTAAACACAGACCACAAAGATACTGCAAA...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAACTAAGGGAAACAACTTaGAATACACAGAATGTATCA +
Preference number: 2 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKLRETT*NTQNVS
Trigger: TGATACATTCTGTGTATTCCAAGTTGTTTCCCTTAG...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCTGCAACAGTAATCTGTaGTATTCCAAATCCCAACCA +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPCNSNL*YSKSQP
Trigger: TGGTTGGGATTTGGAATATCACAGATTACTGTTGCA...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACAC +
Preference number: 2 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLGRKKA*KASTLH
Trigger: GTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCC...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCCAGAGATTTTCTACTTaGGGAAATATGACAGCCCTA +
Preference number: 2 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPQRFST*GNMTAL
Trigger: TAGGGCTGTCATATTTCCTCAAGTAGAAAATCTCTG...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAAGTCAGACTTGGTGTTaGACAGAATTTAAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKSQTWC*TEFKGV
Trigger: CACTCCTTTAAATTCTGTTCAACACCAAGTCTGACT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTAATAATGCTGATTACTaGCTTCATTCTAGTCTGTGC +
Preference number: 2 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFNNADY*LHSSLC
Trigger: GCACAGACTAGAATGAAGCCAGTAATCAGCATTATT...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAACTAGCAACCACACGATaGTTAACAACCATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKLATTR*LTTICN
Trigger: ATTACAGATGGTTGTTAACCATCGTGTGGTTGCTAG...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCAGACAAGAACTTGGATaGAGACAGTCAATGAGAGCA +
Preference number: 2 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLRQELG*RQSMRA
Trigger: TGCTCTCATTGACTGTCTGCATCCAAGTTCTTGTCT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCGTGATAGTTATTGCATaGGCATTCAGGTGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLVIVIA*AFRWRK
Trigger: TTTCCTCCACCTGAATGCGCATGCAATAACTATCAC...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAAATAATGCTGATTACTaGCTTCATTCTAGTCTGTGC +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKNNADY*LHSSLC
Trigger: GCACAGACTAGAATGAAGCCAGTAATCAGCATTATT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTGTCAAGACAAGAACTTaGATGCAGACAGTCAATGAG +
Preference number: 2 (lower is better)
Translates to: HDHIYTMESSGTVINVSLVKTRT*MQTVNE
Trigger: CTCATTGACTGTCTGCATCCAAGTTCTTGTCTTGAC...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR-3UTR TCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTTGCAACAGTAATCTGTaGTATTCCAAATCCCAACCA +
Preference number: 2 (lower is better)
Translates to: HDHIYTMESSGTVINVSLCNSNL*YSKSQP
Trigger: TGGTTGGGATTTGGAATATCACAGATTACTGTTGCA...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR-3UTR TCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATATGCAACAGTAATCTGTaGTATTCCAAATCCCAACCA +
Preference number: 2 (lower is better)
Translates to: TIQCILLENIPSSKAQGICNSNL*YSKSQP
Trigger: TGGTTGGGATTTGGAATATCACAGATTACTGTTGCA...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR TCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: TIQCILLENIPSSKAQGIVKNGR*VITREG
Trigger: TCCTTCCCTGGTTATAACTCATCTTCCATTCTTTAC...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAATGTCTTAGATTCTGTTaGTGTATCAAAACACAATGG +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKCLRFC*CIKTQW
Trigger: CCATTGTGTTTTGATACAGCAACAGAATCTAAGACA...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR GCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTTGTCTTAGATTCTGTTaGTGTATCAAAACACAATGG +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTCLRFC*CIKTQW
Trigger: CCATTGTGTTTTGATACAGCAACAGAATCTAAGACA...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTATTTGCCTCTATAATTaGCATTATATTAGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTICLYN*HYIRQC
Trigger: GCACTGCCTAATATAATGCCAATTATAGAGGCAAAT...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTGTCAATGAGAGCACATaGAATAATGCTGATTACTGG +
Preference number: 2 (lower is better)
Translates to: HDHIYTMESSGTVINVSLVNEST*NNADYW
Trigger: CCAGTAATCAGCATTATTCCATGTGCTCTCATTGAC...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR-3UTR CCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTCAATGAGAGCACATaGAATAATGCTGATTACTGG +
Preference number: 2 (lower is better)
Translates to: TIQCILLENIPSSKAQGIVNEST*NNADYW
Trigger: CCAGTAATCAGCATTATTCCATGTGCTCTCATTGAC...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAATTTGCAGTATCTTTGTaGTCTGTGTTTAGCCTTAAT +
Preference number: 2 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKFAVSL*SVFSLN
Trigger: ATTAAGGCTAAACACAGACCACAAAGATACTGCAAA...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 90 bp TGTAAAGAATGGAAGATGAGTTATAACCAGGGAAGGAAACAAATATaGGCCAGTTCGTACCAAATAATGAGCCATCAGAACATAAATACA +
Preference number: 2 (lower is better)
Translates to: CKEWKMSYNQGRKQI*ASSYQIMSHQNINT
Trigger: TGTATTTATGTTCTGATGGCTCATTATTTGGTACGAACTGGCCAATATTTGTTTCCTTCCCTGGTTATAACTCATCTTCCATTCTTTACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTATCTCCTGTAAAGAATaGAAGATGAGTTATAACCAG +
Preference number: 2 (lower is better)
Translates to: HDHIYTMESSGTVINVSLISCKE*KMSYNQ
Trigger: CTGGTTATAACTCATCTTCCATTCTTTACAGGAGAT...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR-3UTR CCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCATCTCCTGTAAAGAATaGAAGATGAGTTATAACCAG +
Preference number: 2 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLISCKE*KMSYNQ
Trigger: CTGGTTATAACTCATCTTCCATTCTTTACAGGAGAT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
3UTR GCA 72 bp GGCTCTGCTGTTGGTCCTTTAGCACTGGGATTGTGGTaGCCTGGGCGTGGCTTCCCACATCACTCTCCTCTG +
Preference number: 3 (lower is better)
Translates to: GSAVGPLALGLW*PGRGFPHHSPL
Trigger: CAGAGGAGAGTGATGTGGGAAGCCACGCCCAGGGCACCACAATCCCAGTGCTAAAGGACCAACAGCAGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR CCA 72 bp TGGTCCTTTAGCACTGGGATTGTGGTGCCCTGGGCGTaGCTTCCCACATCACTCTCCTCTGAACACAGGAAG +
Preference number: 3 (lower is better)
Translates to: WSFSTGIVVPWA*LPTSLSSEHRK
Trigger: CTTCCTGTGTTCAGAGGAGAGTGATGTGGGAAGCCACGCCCAGGGCACCACAATCCCAGTGCTAAAGGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR CCA 72 bp TGCTGTTGGTCCTTTAGCACTGGGATTGTGGTGCCCTaGGCGTGGCTTCCCACATCACTCTCCTCTGAACAC +
Preference number: 3 (lower is better)
Translates to: CCWSFSTGIVVP*AWLPTSLSSEH
Trigger: GTGTTCAGAGGAGAGTGATGTGGGAAGCCACGCCCAGGGCACCACAATCCCAGTGCTAAAGGACCAACAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp TTTACCCAGGTATCCAGGTACTCACTGAGGACACACTaGGCAGACACTGGTGTCTCCTGTGTGCTAGGTCCA +
Preference number: 3 (lower is better)
Translates to: FTQVSRYSLRTH*ADTGVSCVLGP
Trigger: TGGACCTAGCACACAGGAGACACCAGTGTCTGCTCAGTGTGTCCTCAGTGAGTACCTGGATACCTGGGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp AAGAGGCTTTCGGCTGCCTGTAATTGCTGCTTCTCATaGTCTGATACCTTCTCTGGCCACAGCAGGGAGCCA +
Preference number: 3 (lower is better)
Translates to: KRLSAACNCCFS*SDTFSGHSREP
Trigger: TGGCTCCCTGCTGTGGCCAGAGAAGGTATCAGATCATGAGAAGCAGCAATTACAGGCAGCCGAAAGCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp GGGAGGAGTAAATTTGGGGGAGGGGTCAGTCTAGACTaGGCAAACAACTCCTGGGACAGAGGTTTCCACACA +
Preference number: 3 (lower is better)
Translates to: GRSKFGGGVSLD*ANNSWDRGFHT
Trigger: TGTGTGGAAACCTCTGTCCCAGGAGTTGTTTGCTCAGTCTAGACTGACCCCTCCCCCAAATTTACTCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp GTGTGTTTGCCATTCTCAGGAACAACTGGTTCTTGCTaGATCTTTCATGCTGAGGTTCTCCCAGGGCCTTGC +
Preference number: 3 (lower is better)
Translates to: VCLPFSGTTGSC*IFHAEVLPGPC
Trigger: GCAAGGCCCTGGGAGAACCTCAGCATGAAAGATGCAGCAAGAACCAGTTGTTCCTGAGAATGGCAAACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp TGTCTGGGAGCCTGTCCTCAGCAAATCACTGATATTTaGATCCTTGAATCAGGCTTCTGGCCCAGAGAGCTC +
Preference number: 3 (lower is better)
Translates to: CLGACPQQITDI*ILESGFWPREL
Trigger: GAGCTCTCTGGGCCAGAAGCCTGATTCAAGGATTCAAATATCAGTGATTTGCTGAGGACAGGCTCCCAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp GTTGTGTGTTTGCCATTCTCAGGAACAACTGGTTCTTaGTGCATCTTTCATGCTGAGGTTCTCCCAGGGCCT +
Preference number: 3 (lower is better)
Translates to: VVCLPFSGTTGS*CIFHAEVLPGP
Trigger: AGGCCCTGGGAGAACCTCAGCATGAAAGATGCAGCAAGAACCAGTTGTTCCTGAGAATGGCAAACACACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp ACTCCTGGGACAGAGGTTTCCACACACTTTCACCTGTaGGACAAGGTGCTTTGCCACAATTCTTTCAGCATG +
Preference number: 3 (lower is better)
Translates to: TPGTEVSTHFHL*DKVLCHNSFSM
Trigger: CATGCTGAAAGAATTGTGGCAAAGCACCTTGTCCCACAGGTGAAAGTGTGTGGAAACCTCTGTCCCAGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp CTTTGCATGTGGGCTTCAGGTATAGGAATGCTCACCTaGTTGGTCCCTCCATGTCTCTCACAGTCTTTTCTA +
Preference number: 3 (lower is better)
Translates to: LCMWASGIGMLT*LVPPCLSQSFL
Trigger: TAGAAAAGACTGTGAGAGACATGGAGGGACCAAGCAGGTGAGCATTCCTATACCTGAAGCCCACATGCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACTGGAAGGAAGAAAGCTaGAAAAGCTTCTACCCTACA +
Preference number: 3 (lower is better)
Translates to: TFPFLKGLELKARLLVHHWKEES*KSFYPT
Trigger: TGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCA...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp CTGCACTGTGCATGGCAGCATGGAAGGAAGAAAGCTTaGAAAGCTTCTACCCTACACAACCGTTTACAGAAG +
Preference number: 3 (lower is better)
Translates to: LHCAWQHGRKKA*KASTLHNRLQK
Trigger: CTTCTGTAAACGGTTGTGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCATGCTGCCATGCACAGTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp TGGCCACAGCAGGGAGCCACAGCTATGCGTGTATACTaGTCCCTCCAATATATACAGAGAAACAAAACCAAA +
Preference number: 3 (lower is better)
Translates to: WPQQGATAMRVY*SLQYIQRNKTK
Trigger: TTTGGTTTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCCCTGCTGTGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp TGTGGGACAAGGTGCTTTGCCACAATTCTTTCAGCATaGCAAGAGCTCCCGTACACATGGAGTAAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: CGTRCFATILSA*QELPYTWSKRN
Trigger: GTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATGCTGAAAGAATTGTGGCAAAGCACCTTGTCCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp GTTTTGATGGTAATTGAGGTGAGTTCAGCTAGAGCTTaGGAAGAGCTGTGGGACCTCTACTCATGCATCTGT +
Preference number: 3 (lower is better)
Translates to: VLMVIEVSSARA*EELWDLYSCIC
Trigger: ACAGATGCATGAGTAGAGGTCCCACAGCTCTTCTCAAGCTCTAGCTGAACTCACCTCAATTACCATCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp ACATTAGAGACAAAGTCAGGAAGTGGGAACCAACCTTaGCAAAACACCTGCAGCAAGTCAGTGACATACCAG +
Preference number: 3 (lower is better)
Translates to: TLETKSGSGNQP*QNTCSKSVTYQ
Trigger: CTGGTATGTCACTGACTTGCTGCAGGTGTTTTGTCAAGGTTGGTTCCCACTTCCTGACTTTGTCTCTAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp GTAGGCAAGAGAGAAGTCTCTGTGGATATGAGCTCTTaGCTTTTTAGAGTAATGGAGATTACTGCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: VGKREVSVDMSS*LFRVMEITAQH
Trigger: GTGCTGGGCAGTAATCTCCATTACTCTAAAAAGGCAAGAGCTCATATCCACAGAGACTTCTCTCTTGCCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp CCCACATCACTCTCCTCTGAACACAGGAAGATCTTTCAGTTTCATCAGTTTCCACTGTTTCCTAGGTGTTaGCACTTCCCTGATGTTTTC +
Preference number: 3 (lower is better)
Translates to: PTSLSSEHRKIFQFHQFPLFPRC*HFPDVF
Trigger: GAAAACATCAGGGAAGTGCAAACACCTAGGAAACAG...TGGAAACTGATGAAACTGAAAGATCTTCCTGTGTTCAGAGGAGAGTGATGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAACTGCAGGCACAATCCTaGGGAAATGAGAGTTTTGAT +
Preference number: 3 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKLQAQS*GNESFD
Trigger: ATCAAAACTCTCATTTCCCAAGGATTGTGCCTGCAG...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATGCGGATGTCTTTCTATaGCCTGTTCTTGTTTGGGGT +
Preference number: 3 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDADVFL*PVLVWG
Trigger: ACCCCAAACAAGAACAGGCAATAGAAAGACATCCGC...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp AAGCAGAGCAACAAAGGTAGAGCTAGAAGGCTTGTGTaGGGTATCAGGGCTCAGATCTTAATTCAGGATGTT +
Preference number: 3 (lower is better)
Translates to: KQSNKGRARRLV*GIRAQILIQDV
Trigger: AACATCCTGAATTAAGATCTGAGCCCTGATACCTCACACAAGCCTTCTAGCTCTACCTTTGTTGCTCTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp ATAGAAACTGAAGTTAGTCTGCATTGCTTCGTAGTGTaGTGCCTGCAGGCACAATCCTTGGGAAATGAGAGT +
Preference number: 3 (lower is better)
Translates to: IETEVSLHCFVV*CLQAQSLGNES
Trigger: ACTCTCATTTCCCAAGGATTGTGCCTGCAGGCATCACACTACGAAGCAATGCAGACTAACTTCAGTTTCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp ACCACACGATGGTTAACAACCATCTGTAATGGGATCTaGTGCTCTATTCAGGTGTGTGTGAACAGTGACAGT +
Preference number: 3 (lower is better)
Translates to: TTRWLTTICNGI*CSIQVCVNSDS
Trigger: ACTGTCACTGTTCACACACACCTGAATAGAGCATCAGATCCCATTACAGATGGTTGTTAACCATCGTGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp CAAGGATATAGAAACACTGCAGCATTAACCGTTTGCTaGTATGTGTGGACCGCTGTGAGATACAACAGCAGA +
Preference number: 3 (lower is better)
Translates to: QGYRNTAALTVC*YVWTAVRYNSR
Trigger: TCTGCTGTTGTATCTCACAGCGGTCCACACATATCAGCAAACGGTTAATGCTGCAGTGTTTCTATATCCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp CTTGCCTTTGTTCAGATTCCTTTATCCCTAACTATATaGCACTCCACTCAATGCCTCAGGCAAGCAGGAAAA +
Preference number: 3 (lower is better)
Translates to: LAFVQIPLSLTI*HSTQCLRQAGK
Trigger: TTTTCCTGCTTGCCTGAGGCATTGAGTGGAGTGGCATATAGTTAGGGATAAAGGAATCTGAACAAAGGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp GCCTTAATGAGAAAAACATCCTTCGATGCCTGGCTCTaGGGTCATCTCCTCAACTTTCTGAATGGATACATT +
Preference number: 3 (lower is better)
Translates to: ALMRKTSFDAWL*GHLLNFLNGYI
Trigger: AATGTATCCATTCAGAAAGTTGAGGAGATGACCTCAGAGCCAGGCATCGAAGGATGTTTTTCTCATTAAGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp TCTGTGTTTAGCCTTAATGAGAAAAACATCCTTCGATaGCTGGCTCTGAGGTCATCTCCTCAACTTTCTGAA +
Preference number: 3 (lower is better)
Translates to: SVFSLNEKNILR*LALRSSPQLSE
Trigger: TTCAGAAAGTTGAGGAGATGACCTCAGAGCCAGGCATCGAAGGATGTTTTTCTCATTAAGGCTAAACACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp TTAAAAGCCATGCTGTACTTATGCAGACAGATCAGATaGTATCAGAACCCCTTTCAAAGGAAGGCAGTACTC +
Preference number: 3 (lower is better)
Translates to: LKAMLYLCRQIR*YQNPFQRKAVL
Trigger: GAGTACTGCCTTCCTTTGAAAGGGGTTCTGATAGCATCTGATCTGTCTGCATAAGTACAGCATGGCTTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp AATCCCAGCATTACAGTAATGTTGCATTACCAGAAGTaGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATTCC +
Preference number: 3 (lower is better)
Translates to: NPSITVMLHYQK*RAVSSCLCSDS
Trigger: GGAATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTACTGTAATGCTGGGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATTGGAAGGAAGAAAGCTaGAAAAGCTTCTACCCTACA +
Preference number: 3 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDWKEES*KSFYPT
Trigger: TGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCA...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACTCAGAGATTTTCTACTaGAGGAAATATGACAGCCCT +
Preference number: 3 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHSEIFY*RKYDSP
Trigger: AGGGCTGTCATATTTCCTCAAGTAGAAAATCTCTGA...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAATCAGAGATTTTCTACTaGAGGAAATATGACAGCCCT +
Preference number: 3 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKSEIFY*RKYDSP
Trigger: AGGGCTGTCATATTTCCTCAAGTAGAAAATCTCTGA...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAGCGGATGTCTTTCTATaGCCTGTTCTTGTTTGGGGT +
Preference number: 3 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKADVFL*PVLVWG
Trigger: ACCCCAAACAAGAACAGGCAATAGAAAGACATCCGC...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAGTTCATATGTGCTCTaGTTGTATCTATGGGACCTT +
Preference number: 3 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHSSYVL*LYLWDL
Trigger: AAGGTCCCATAGATACAACAAGAGCACATATGAACT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACGATTTTGCAGTATCTTaGTGGTCTGTGTTTAGCCTT +
Preference number: 3 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHDFAVS*WSVFSL
Trigger: AAGGCTAAACACAGACCACAAAGATACTGCAAAATC...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR GCA 72 bp TGTGGGACCTCTACTCATGCATCTGTAAGAGCACTGTaGAGTCATAATAAGCTTTCTTCTTTCACAACTCTA +
Preference number: 3 (lower is better)
Translates to: CGTSTHASVRAL*SHNKLSSFTTL
Trigger: TAGAGTTGTGAAAGAAGAAAGCTTATTATGACTGCACAGTGCTCTTACAGATGCATGAGTAGAGGTCCCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR GCA 72 bp AAGATATGGAAGGAGACACAGCACACAGTTCATATGTaGTCTTGTTGTATCTATGGGACCTTGGACATAATC +
Preference number: 3 (lower is better)
Translates to: KIWKETQHTVHM*SCCIYGTLDII
Trigger: GATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGTGTGCTGTGTCTCCTTCCATATCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp TTCAGTTCTCTGGGTTATAAAGTTAGAAGTGGTCATTaGTTCACCCAAGTTCCTATGTCCCCCAAGATTTCA +
Preference number: 3 (lower is better)
Translates to: FSSLGYKVRSGH*FTQVPMSPKIS
Trigger: TGAAATCTTGGGGGACATAGGAACTTGGGTGAACCAATGACCACTTCTAACTTTATAACCCAGAGAACTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp ATCAAAGGTTCTATGTACAGCCCTCTTTCAGTTCTCTaGGTTATAAAGTTAGAAGTGGTCATTGGTTCACCC +
Preference number: 3 (lower is better)
Translates to: IKGSMYSPLSVL*VIKLEVVIGSP
Trigger: GGGTGAACCAATGACCACTTCTAACTTTATAACCCAGAGAACTGAAAGAGGGCTGTACATAGAACCTTTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp CGACAAAGCACTTCTGCTGAGGTATTTGAAGGCTCCTaGACAAAACAAACTCATTTATTGAACGAGGACAAT +
Preference number: 3 (lower is better)
Translates to: RQSTSAEVFEGS*TKQTHLLNEDN
Trigger: ATTGTCCTCGTTCAATAAATGAGTTTGTTTTGTCCAGGAGCCTTCAAATACCTCAGCAGAAGTGCTTTGTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTTGGAAGGAAGAAAGCTaGAAAAGCTTCTACCCTACA +
Preference number: 3 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFWKEES*KSFYPT
Trigger: TGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCA...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCTGGAAGGAAGAAAGCTaGAAAAGCTTCTACCCTACA +
Preference number: 3 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPWKEES*KSFYPT
Trigger: TGTAGGGTAGAAGCTTTTCAAGCTTTCTTCCTTCCA...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTTGGGAAATGAGAGTTTaGATGGTAATTGAGGTGAGT +
Preference number: 3 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFWEMRV*MVIEVS
Trigger: ACTCACCTCAATTACCATCAAAACTCTCATTTCCCA...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp AGCCTTATTCCCCTATGTACCATATTCACAGTTAACTaGATGAAGTCAAGACAAGAACTTGGATGCAGACAG +
Preference number: 3 (lower is better)
Translates to: SLIPLCTIFTVN*MKSRQELGCRQ
Trigger: CTGTCTGCATCCAAGTTCTTGTCTTGACTTCATTCAGTTAACTGTGAATATGGTACATAGGGGAATAAGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp TTAGTATATTATCTGGAATATCCAGAAATGCAGTGGTaGTTAAAGAGGAGGCTCTGCTGTTGGTCCTTTAGC +
Preference number: 3 (lower is better)
Translates to: LVYYLEYPEMQW*LKRRLCCWSFS
Trigger: GCTAAAGGACCAACAGCAGAGCCTCCTCTTTAATCACCACTGCATTTCTGGATATTCCAGATAATATACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp TTGCCTAGAGCCAATATAATAAGCCTAAAATACTGCTaGGCTACATGGTTGAGGTTAACTAAAGTGCACGCT +
Preference number: 3 (lower is better)
Translates to: LPRANIISLKYC*ATWLRLTKVHA
Trigger: AGCGTGCACTTTAGTTAACCTCAACCATGTAGCTCAGCAGTATTTTAGGCTTATTATATTGGCTCTAGGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp AATGAAATAAGATGCCATGCACATTTTAGGAGTGTATaGAGGGGTACAAGTGGTGTTCTGGACATAGGAAAT +
Preference number: 3 (lower is better)
Translates to: NEIRCHAHFRSV*RGTSGVLDIGN
Trigger: ATTTCCTATGTCCAGAACACCACTTGTACCCCTCCATACACTCCTAAAATGTGCATGGCATCTTATTTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp ACAGCACACAGTTCATATGTGCTCTTGTTGTATCTATaGGACCTTGGACATAATCAAGTTTTCACAGATTCC +
Preference number: 3 (lower is better)
Translates to: TAHSSYVLLLYL*DLGHNQVFTDS
Trigger: GGAATCTGTGAAAACTTGATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGTGTGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CCA 72 bp TGCCTGGCTCTGAGGTCATCTCCTCAACTTTCTGAATaGATACATTTTTATGAGTCTACCAGTGATAAGATA +
Preference number: 3 (lower is better)
Translates to: CLALRSSPQLSE*IHFYESTSDKI
Trigger: TATCTTATCACTGGTAGACTCATAAAAATGTATCCATTCAGAAAGTTGAGGAGATGACCTCAGAGCCAGGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp GGAAATTTGATGTATTTAGACTCAGGCTGTGTGTCCTaGTTTATTAGAGTTGTCAGAAATCTTCACACAGGG +
Preference number: 3 (lower is better)
Translates to: GNLMYLDSGCVS*FIRVVRNLHTG
Trigger: CCCTGTGTGAAGATTTCTGACAACTCTAATAAATCAGGACACACAGCCTGAGTCTAAATACATCAAATTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR CCA 72 bp TGGATACATTTTTATGAGTCTACCAGTGATAAGATATaGAAGGAGACACAGCACACAGTTCATATGTGCTCT +
Preference number: 3 (lower is better)
Translates to: WIHFYESTSDKI*KETQHTVHMCS
Trigger: AGAGCACATATGAACTGTGTGCTGTGTCTCCTTCCATATCTTATCACTGGTAGACTCATAAAAATGTATCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR-3UTR CAA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAGTTATATCATCTCCATaGTTTTCAGAAGCAGAGCAA +
Preference number: 3 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKVISSP*FSEAEQ
Trigger: TTGCTCTGCTTCTGAAAACAATGGAGATGATATAAC...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp TTATTCCCCTATGTACCATATTCACAGTTAACTGAATaGAGTCAAGACAAGAACTTGGATGCAGACAGTCAA +
Preference number: 3 (lower is better)
Translates to: LFPYVPYSQLTE*SQDKNLDADSQ
Trigger: TTGACTGTCTGCATCCAAGTTCTTGTCTTGACTTCATTCAGTTAACTGTGAATATGGTACATAGGGGAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp ACAGAAGACTGTAAATCTCCTGTAAAGAATGGAAGATaGGTTATAACCAGGGAAGGAAACAAATATTGGCCA +
Preference number: 3 (lower is better)
Translates to: TEDCKSPVKNGR*VITREGNKYWP
Trigger: TGGCCAATATTTGTTTCCTTCCCTGGTTATAACTCATCTTCCATTCTTTACAGGAGATTTACAGTCTTCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp TCTGTAATGGGATCTGATGCTCTATTCAGGTGTGTGTaGACAGTGACAGTGTACTCACATATACAATATAAA +
Preference number: 3 (lower is better)
Translates to: SVMGSDALFRCV*TVTVYSHIQYK
Trigger: TTTATATTGTATATGTGAGTACACTGTCACTGTTCACACACACCTGAATAGAGCATCAGATCCCATTACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR CCA 72 bp TTTCTTATAACTCCCATAACAATTTGCCTCTATAATTaGCATTATATTAGGCAGTGCTGTGCTGCCCTACAT +
Preference number: 3 (lower is better)
Translates to: FLITPITICLYN*HYIRQCCAALH
Trigger: ATGTAGGGCAGCACAGCACTGCCTAATATAATGCCAATTATAGAGGCAAATTGTTATGGGAGTTATAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp TTTCAAAACCGTGCCTTCTATTGCAACAGTAATCTGTaGTATTCCAAATCCCAACCAAAGCTGTTTAATAGT +
Preference number: 3 (lower is better)
Translates to: FQNRAFYCNSNL*YSKSQPKLFNS
Trigger: ACTATTAAACAGCTTTGGTTGGGATTTGGAATATCACAGATTACTGTTGCAATAGAAGGCACGGTTTTGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp ATTCCAAATCCCAACCAAAGCTGTTTAATAGTTTGCTaGTGTCTTAGATTCTGTTGCTGTATCAAAACACAA +
Preference number: 3 (lower is better)
Translates to: IPNPNQSCLIVC*CLRFCCCIKTQ
Trigger: TTGTGTTTTGATACAGCAACAGAATCTAAGACATCAGCAAACTATTAAACAGCTTTGGTTGGGATTTGGAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp AATATGACAGCCCTAAAACAAATCAAGGTTATATTCTaGGGTGTCAAACAGGCTCCCTGTTCTATAAATTAT +
Preference number: 3 (lower is better)
Translates to: NMTALKQIKVIF*GVKQAPCSINY
Trigger: ATAATTTATAGAACAGGGAGCCTGTTTGACACCTCAGAATATAACCTTGATTTGTTTTAGGGCTGTCATATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
3UTR TCA 72 bp CATTTATTGAACGAGGACAATAACTTTCCAAATACATaGCCACTAGAAATTTGTTGTGTGTTTGCCATTCTC +
Preference number: 3 (lower is better)
Translates to: HLLNEDNNFPNT*PLEICCVFAIL
Trigger: GAGAATGGCAAACACACAACAAATTTCTAGTGGTCATGTATTTGGAAAGTTATTGTCCTCGTTCAATAAATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR TCA 72 bp AAAGATAGGTCATTCTGGCATGTTTTAATAAAGGCTTaGCTAGCTCAGATAAAGTGGATAAAATCAACAAGG +
Preference number: 3 (lower is better)
Translates to: KDRSFWHVLIKA*LAQIKWIKSTR
Trigger: CCTTGTTGATTTTATCCACTTTATCTGAGCTAGTCAAGCCTTTATTAAAACATGCCAGAATGACCTATCTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp CAGGCTTCTGGCCCAGAGAGCTCTAAATCCAGGGCATaGCTGGGTGCAGAAAGATCTGCAGTAGAGTCTGGA +
Preference number: 4 (lower is better)
Translates to: QASGPESSKSRA*LGAERSAVESG
Trigger: TCCAGACTCTACTGCAGATCTTTCTGCACCCAGCAATGCCCTGGATTTAGAGCTCTCTGGGCCAGAAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACCTAAGAAAGCCACTGTaGAGCTCCCCAGAGCCAAGG +
Preference number: 4 (lower is better)
Translates to: TFPFLKGLELKARLLVHHLRKPL*SSPEPR
Trigger: CCTTGGCTCTGGGGAGCTTCACAGTGGCTTTCTTAG...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp GGTTTCCACACACTTTCACCTGTGGGACAAGGTGCTTaGCCACAATTCTTTCAGCATGGCAAGAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: GFHTLSPVGQGA*PQFFQHGKSSR
Trigger: ACGGGAGCTCTTGCCATGCTGAAAGAATTGTGGCAAAGCACCTTGTCCCACAGGTGAAAGTGTGTGGAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACGCATCAAGGAGACCATaGCATGGGACAAGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: TFPFLKGLELKARLLVHHASRRP*HGTSVC
Trigger: ACACACACTTGTCCCATGCCATGGTCTCCTTGATGC...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp TGCTCTGTTTGGCCAGCAGATGTCAGAAGGGAAACATaGGTTATGGGAGGAGTAAATTTGGGGGAGGGGTCA +
Preference number: 4 (lower is better)
Translates to: CSVWPADVRRET*VMGGVNLGEGS
Trigger: TGACCCCTCCCCCAAATTTACTCCTCCCATAACCAATGTTTCCCTTCTGACATCTGCTGGCCAAACAGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACCTGATGTTCCTTCTGTaGCCCAGTCCAAATCTTCAG +
Preference number: 4 (lower is better)
Translates to: TFPFLKGLELKARLLVHHLMFLL*PSPNLQ
Trigger: CTGAAGATTTGGACTGGGCCACAGAAGGAACATCAG...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTCTAGTACTAGACTTGTaGGGGCAGAGAGGAACAGGG +
Preference number: 4 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSLVLDL*GQRGTG
Trigger: CCCTGTTCCTCTCTGCCCTCACAAGTCTAGTACTAG...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAAGATGGTGGGCTAGTACTAGACTTGTaGGGGCAGAGAGGAACAGGG +
Preference number: 4 (lower is better)
Translates to: LRKYSLIQGSGNSKEDGGLVLDL*GQRGTG
Trigger: CCCTGTTCCTCTCTGCCCTCACAAGTCTAGTACTAG...CCCACCATCTTCTTTACTATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACGTCAAAATTGTGCAGTaGTGTCCATTCCGATGTGTT +
Preference number: 4 (lower is better)
Translates to: TFPFLKGLELKARLLVHHVKIVQ*CPFRCV
Trigger: AACACATCGGAATGGACAGCACTGCACAATTTTGAC...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACAGAGGAACAGGGCTATaGATCCTAGAGACATCCCCA +
Preference number: 4 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHRGTGL*ILETSP
Trigger: TGGGGATGTCTCTAGGATGCATAGCCCTGTTCCTCT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAAGTGTGTGTCCTTGGTaGCTACCTGATGGACATAGG +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKSVCPW*LPDGHR
Trigger: CCTATGTCCATCAGGTAGCCACCAAGGACACACACT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
CDS-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGCATCAAGGAGACCATaGCATGGGACAAGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSASRRP*HGTSVC
Trigger: ACACACACTTGTCCCATGCCATGGTCTCCTTGATGC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp GAGCCTGTCCTCAGCAAATCACTGATATTTGAATCCTaGAATCAGGCTTCTGGCCCAGAGAGCTCTAAATCC +
Preference number: 4 (lower is better)
Translates to: EPVLSKSLIFES*NQASGPESSKS
Trigger: GGATTTAGAGCTCTCTGGGCCAGAAGCCTGATTCAAGGATTCAAATATCAGTGATTTGCTGAGGACAGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAAGATGGTGGGCATTCATCTCCACACTaGCCACCAAGAAGCCAGACT +
Preference number: 4 (lower is better)
Translates to: LRKYSLIQGSGNSKEDGGHSSPH*PPRSQT
Trigger: AGTCTGGCTTCTTGGTGGTCAGTGTGGAGATGAATG...CCCACCATCTTCTTTACTATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAACTAAGAAAGCCACTGTaGAGCTCCCCAGAGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKLRKPL*SSPEPR
Trigger: CCTTGGCTCTGGGGAGCTTCACAGTGGCTTTCTTAG...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCTAAGAAAGCCACTGTaGAGCTCCCCAGAGCCAAGG +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTLRKPL*SSPEPR
Trigger: CCTTGGCTCTGGGGAGCTTCACAGTGGCTTTCTTAG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp ACCTTTCCATTCCTTAAGGGATTAGAGCTGAAGGCACGCCTCCTTGTCCATCACACTATGTCAAAATTGTaGAGTGCTGTCCATTCCGAT +
Preference number: 4 (lower is better)
Translates to: TFPFLKGLELKARLLVHHTMSKL*SAVHSD
Trigger: ATCGGAATGGACAGCACTGCACAATTTTGACATAGT...GTGATGGACAAGGAGGCGTGCCTTCAGCTCTAATCCCTTAAGGAATGGAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATAGAGGAACAGGGCTATaGATCCTAGAGACATCCCCA +
Preference number: 4 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDRGTGL*ILETSP
Trigger: TGGGGATGTCTCTAGGATGCATAGCCCTGTTCCTCT...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACCTGATGTTCCTTCTGTaGCCCAGTCCAAATCTTCAG +
Preference number: 4 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHLMFLL*PSPNLQ
Trigger: CTGAAGATTTGGACTGGGCCACAGAAGGAACATCAG...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAATTACATGGCAGAAGATaGGAGAAAACTTCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKLHGRR*EKTSGA
Trigger: GGCTCCTGAAGTTTTCTCTCATCTTCTGCCATGTAA...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTTTACATGGCAGAAGATaGGAGAAAACTTCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSLHGRR*EKTSGA
Trigger: GGCTCCTGAAGTTTTCTCTCATCTTCTGCCATGTAA...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACTTACATGGCAGAAGATaGGAGAAAACTTCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHLHGRR*EKTSGA
Trigger: GGCTCCTGAAGTTTTCTCTCATCTTCTGCCATGTAA...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTAGAGGAACAGGGCTATaGATCCTAGAGACATCCCCA +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSRGTGL*ILETSP
Trigger: TGGGGATGTCTCTAGGATGCATAGCCCTGTTCCTCT...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACATTTTGGAAGAAAGATaGACCCTAGCAAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHILEER*TLASLH
Trigger: GTGCAGGCTTGCTAGGGTGCATCTTTCTTCCAAAAT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAATTTTGGAAGAAAGATaGACCCTAGCAAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKILEER*TLASLH
Trigger: GTGCAGGCTTGCTAGGGTGCATCTTTCTTCCAAAAT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTGCATCAAGGAGACCATaGCATGGGACAAGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSASRRP*HGTSVC
Trigger: ACACACACTTGTCCCATGCCATGGTCTCCTTGATGC...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp TACATTAGAGACAAAGTCAGGAAGTGGGAACCAACCTaGACAAAACACCTGCAGCAAGTCAGTGACATACCA +
Preference number: 4 (lower is better)
Translates to: YIRDKVRKWEPT*TKHLQQVSDIP
Trigger: TGGTATGTCACTGACTTGCTGCAGGTGTTTTGTCAAGGTTGGTTCCCACTTCCTGACTTTGTCTCTAATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAACCTGCTGACAGTCATTaGATATTCCTTTGCGTACTT +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKPADSH*IFLCVL
Trigger: AAGTACGCAAAGGAATATTCAATGACTGTCAGCAGG...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAATCATACTCTGCACACTaGTTTTCCCTATGCTTCATG +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKSYSAH*FSLCFM
Trigger: CATGAAGCATAGGGAAAATCAGTGTGCAGAGTATGA...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCCTAAGAAAGCCACTGTaGAGCTCCCCAGAGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLLRKPL*SSPEPR
Trigger: CCTTGGCTCTGGGGAGCTTCACAGTGGCTTTCTTAG...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR GCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTGTCAAAATTGTGCAGTaGTGTCCATTCCGATGTGTT +
Preference number: 4 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSVKIVQ*CPFRCV
Trigger: AACACATCGGAATGGACAGCACTGCACAATTTTGAC...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAATCCTCCAAAAGCAAATaGGTTCAGTTACATGGCAGA +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKSSKSK*VQLHGR
Trigger: TCTGCCATGTAACTGAACCCATTTGCTTTTGGAGGA...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTTTACATGGCAGAAGATaGGAGAAAACTTCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSLHGRR*EKTSGA
Trigger: GGCTCCTGAAGTTTTCTCTCATCTTCTGCCATGTAA...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp TTCTGTCGAGGTCTCCTCTACTTTGGTAACCCAGTTTCCTTCACTTACTTTTTCTCATACTCTGCACACTaGTTTTCCCTATGCTTCATG +
Preference number: 4 (lower is better)
Translates to: FCRGLLYFGNPVSFTYFFSYSAH*FSLCFM
Trigger: CATGAAGCATAGGGAAAATCAGTGTGCAGAGTATGA...GAAAAAGTAAGTGAAGGAAACTGGGTTACCAAAGTAGAGGAGACCTCGACAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTAAAGAAGATGGTGGGTCATACTCTGCACACTaGTTTTCCCTATGCTTCATG +
Preference number: 4 (lower is better)
Translates to: LRKYSLIQGSGNSKEDGGSYSAH*FSLCFM
Trigger: CATGAAGCATAGGGAAAATCAGTGTGCAGAGTATGA...CCCACCATCTTCTTTACTATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCCTAGTACTAGACTTGTaGGGGCAGAGAGGAACAGGG +
Preference number: 4 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLLVLDL*GQRGTG
Trigger: CCCTGTTCCTCTCTGCCCTCACAAGTCTAGTACTAG...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR TCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATACTAGTACTAGACTTGTaGGGGCAGAGAGGAACAGGG +
Preference number: 4 (lower is better)
Translates to: TIQCILLENIPSSKAQGILVLDL*GQRGTG
Trigger: CCCTGTTCCTCTCTGCCCTCACAAGTCTAGTACTAG...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAATGGGTTCAGTTACATaGCAGAAGATGAGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKMGSVT*QKMREN
Trigger: GTTTTCTCTCATCTTCTGCCATGTAACTGAACCCAT...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp CATGGCAAGAGCTCCCGTACACATGGAGTAAAAGAAACACTTTTCCATAGCTCTATGGGTTCAGTTACATaGCAGAAGATGAGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: HGKSSRTHGVKETLFHSSMGSVT*QKMREN
Trigger: GTTTTCTCTCATCTTCTGCCATGTAACTGAACCCAT...AGAGCTATGGAAAAGTGTTTCTTTTACTCCATGTGTACGGGAGCTCTTGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCTGATGTTCCTTCTGTaGCCCAGTCCAAATCTTCAG +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTLMFLL*PSPNLQ
Trigger: CTGAAGATTTGGACTGGGCCACAGAAGGAACATCAG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp GAAGGAGACACAGCACACAGTTCATATGTGCTCTTGTaGTATCTATGGGACCTTGGACATAATCAAGTTTTC +
Preference number: 4 (lower is better)
Translates to: EGDTAHSSYVLL*YLWDLGHNQVF
Trigger: GAAAACTTGATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGTGTGCTGTGTCTCCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp ATGGAAGGAGACACAGCACACAGTTCATATGTGCTCTaGTTGTATCTATGGGACCTTGGACATAATCAAGTT +
Preference number: 4 (lower is better)
Translates to: MEGDTAHSSYVL*LYLWDLGHNQV
Trigger: AACTTGATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGTGTGCTGTGTCTCCTTCCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp TTTATGAATGATCACCAGTCTTCCCAACAAGTCTTCTaGTCTCCCAGAATTTCCTTGTTACAAGGGACTACC +
Preference number: 4 (lower is better)
Translates to: FMNDHQSSQQVF*SPRISLLQGTT
Trigger: GGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAAGAAGACTTGTTGGGAAGACTGGTGATCATTCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTCCTGCTGACAGTCATTaGATATTCCTTTGCGTACTT +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSPADSH*IFLCVL
Trigger: AAGTACGCAAAGGAATATTCAATGACTGTCAGCAGG...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATACTATGTCAAAATTGTaGAGTGCTGTCCATTCCGAT +
Preference number: 4 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDTMSKL*SAVHSD
Trigger: ATCGGAATGGACAGCACTGCACAATTTTGACATAGT...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCAGAGGAACAGGGCTATaGATCCTAGAGACATCCCCA +
Preference number: 4 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLRGTGL*ILETSP
Trigger: TGGGGATGTCTCTAGGATGCATAGCCCTGTTCCTCT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAATTTTGGAAGAAAGATaGACCCTAGCAAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKILEER*TLASLH
Trigger: GTGCAGGCTTGCTAGGGTGCATCTTTCTTCCAAAAT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTATTTTGGAAGAAAGATaGACCCTAGCAAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTILEER*TLASLH
Trigger: GTGCAGGCTTGCTAGGGTGCATCTTTCTTCCAAAAT...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCGCATCAAGGAGACCATaGCATGGGACAAGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLASRRP*HGTSVC
Trigger: ACACACACTTGTCCCATGCCATGGTCTCCTTGATGC...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GTAATGTTGCATTACCAGAAGTGGAGGGCAGTTTCTTCTTGCCTTTGTTCAGATGGAAACTTCATTTTCTaGGCACCGATCACAATCAAA +
Preference number: 4 (lower is better)
Translates to: VMLHYQKWRAVSSCLCSDGNFIF*APITIK
Trigger: TTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCC...ATCTGAACAAAGGCAAGAAGAAACTGCCCTCCACTTCTGGTAATGCAACATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp TTCTGTCGAGGTCTCCTCTACTTTGGTAACCCAGTTTCCTTCACTTACTTTTTCGGAAACTTCATTTTCTaGGCACCGATCACAATCAAA +
Preference number: 4 (lower is better)
Translates to: FCRGLLYFGNPVSFTYFFGNFIF*APITIK
Trigger: TTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCC...GAAAAAGTAAGTGAAGGAAACTGGGTTACCAAAGTAGAGGAGACCTCGACAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAGCCACAGCTATGCGTGTATACTGCTCCCTCCAATATATACAGAGAAACAAAGGGTTTTCTCTAAGTTaGCATATTTATCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: GATAMRVYCSLQYIQRNKGFSLS*HIYHLY
Trigger: GTACAGGTGATAAATATGCCAACTTAGAGAAAACCC...TTTGTTTCTCTGTATATATTGGAGGGAGCAGTATACACGCATAGCTGTGGCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTACAAGTGTGTGTCCTTaGTGGCTACCTTTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: HDHIYTMESSGTVINVSLTSVCP*WLPLVS
Trigger: GGACACCAAAGGTAGCCACCAAGGACACACACTTGT...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233547.2
CDS-3UTR CCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCACAAGTGTGTGTCCTTaGTGGCTACCTTTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLTSVCP*WLPLVS
Trigger: GGACACCAAAGGTAGCCACCAAGGACACACACTTGT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAACCTGCTGACAGTCATTaGATATTCCTTTGCGTACTT +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKPADSH*IFLCVL
Trigger: AAGTACGCAAAGGAATATTCAATGACTGTCAGCAGG...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR TCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAATCATACTCTGCACACTaGTTTTCCCTATGCTTCATG +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKSYSAH*FSLCFM
Trigger: CATGAAGCATAGGGAAAATCAGTGTGCAGAGTATGA...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACCTGAGAAATGTTTACTaGGTATTTGTCAGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHLRNVY*VFVSVH
Trigger: ATGAACACTGACAAATACCCAGTAAACATTTCTCAG...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATACTGATGTTCCTTCTGTaGCCCAGTCCAAATCTTCAG +
Preference number: 4 (lower is better)
Translates to: TIQCILLENIPSSKAQGILMFLL*PSPNLQ
Trigger: CTGAAGATTTGGACTGGGCCACAGAAGGAACATCAG...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTGGAAACTTCATTTTCTaGGCACCGATCACAATCAAA +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSGNFIF*APITIK
Trigger: TTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCC...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp TCTTCCCAACAAGTCTTCTTGTCTCCCAGAATTTCCTaGTTACAAGGGACTACCAGCCTCATTTTTAGAAAA +
Preference number: 4 (lower is better)
Translates to: SSQQVFLSPRIS*LQGTTSLIFRK
Trigger: TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAAGAAGACTTGTTGGGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTCAGATTCCATGTCTTTaGATTTCTTCTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSQIPCL*ISSLKS
Trigger: AGACTTGAGAGAAGAAATGCAAAGACATGGAATCTG...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTCAGATTCCATGTCTTTaGATTTCTTCTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFQIPCL*ISSLKS
Trigger: AGACTTGAGAGAAGAAATGCAAAGACATGGAATCTG...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp TTCTGTCGAGGTCTCCTCTACTTTGGTAACCCAGTTTCCTTCACTTACTTTTTCCTTGTCATGTATATCTaGATGTCTTTTGGGATCATA +
Preference number: 4 (lower is better)
Translates to: FCRGLLYFGNPVSFTYFFLVMYI*MSFGII
Trigger: TATGATCCCAAAAGACATGCAGATATACATGACAAG...GAAAAAGTAAGTGAAGGAAACTGGGTTACCAAAGTAGAGGAGACCTCGACAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAACTATGTCAAAATTGTaGAGTGCTGTCCATTCCGAT +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKTMSKL*SAVHSD
Trigger: ATCGGAATGGACAGCACTGCACAATTTTGACATAGT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAATGGGTTCAGTTACATaGCAGAAGATGAGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKMGSVT*QKMREN
Trigger: GTTTTCTCTCATCTTCTGCCATGTAACTGAACCCAT...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTCAGGTTAGGATTAAATaGTCCAAAGAAAAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFQVRIK*SKEKLW
Trigger: CCAAAGCTTTTCTTTGGACCATTTAATCCTAACCTG...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
CDS-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAGGAAACTTCATTTTCTaGGCACCGATCACAATCAAA +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKGNFIF*APITIK
Trigger: TTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCC...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp AATGAGAGCACATGGAATAATGCTGATTACTGGCTTCATTCTAGTCTGTGCTCTTATCTGCTGTTTCATTaGAAACTTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: NESTWNNADYWLHSSLCSYLLFH*KLHFLG
Trigger: GCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATA...AGAGCACAGACTAGAATGAAGCCAGTAATCAGCATTATTCCATGTGCTCTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp ACAGTTCATATGTGCTCTTGTTGTATCTATGGGACCTaGGACATAATCAAGTTTTCACAGATTCCAGGTCAT +
Preference number: 4 (lower is better)
Translates to: TVHMCSCCIYGT*DIIKFSQIPGH
Trigger: ATGACCTGGAATCTGTGAAAACTTGATTATGTCCAAGGTCCCATAGATACAACAAGAGCACATATGAACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCAGATTCCATGTCTTTaGATTTCTTCTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTQIPCL*ISSLKS
Trigger: AGACTTGAGAGAAGAAATGCAAAGACATGGAATCTG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAGTCAAAATTGTGCAGTaGTGTCCATTCCGATGTGTT +
Preference number: 4 (lower is better)
Translates to: TIQCILLENIPSSKAQGIVKIVQ*CPFRCV
Trigger: AACACATCGGAATGGACAGCACTGCACAATTTTGAC...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTCTATCAAAGACATGTTaGGTAAAAGATCAGGATTCT +
Preference number: 4 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFLSKTC*VKDQDS
Trigger: AGAATCCTGATCTTTTACCCAACATGTCTTTGATAG...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCAGGTTAGGATTAAATaGTCCAAAGAAAAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTQVRIK*SKEKLW
Trigger: CCAAAGCTTTTCTTTGGACCATTTAATCCTAACCTG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
CDS-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTTATCTGCTGTTTCATTaGAAACTTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTYLLFH*KLHFLG
Trigger: GCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATA...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAATATCTGCTGTTTCATTaGAAACTTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKYLLFH*KLHFLG
Trigger: GCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATA...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp TTGTCTCCCAGAATTTCCTTGTTACAAGGGACTACCAGCCTCATTTTTAGAAAAGGGTTTTCTCTAAGTTaGCATATTTATCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: LSPRISLLQGTTSLIFRKGFSLS*HIYHLY
Trigger: GTACAGGTGATAAATATGCCAACTTAGAGAAAACCC...TTTTCTAAAAATGAGGCTGGTAGTCCCTTGTAACAAGGAAATTCTGGGAGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
3UTR CAA 72 bp TCTTTCATTACTTCTTCTGTCGAGGTCTCCTCTACTTaGGTAACCCAGTTTCCTTCACTTACTTTTTCAATT +
Preference number: 4 (lower is better)
Translates to: SFITSSVEVSST*VTQFPSLTFSI
Trigger: AATTGAAAAAGTAAGTGAAGGAAACTGGGTTACCAAAGTAGAGGAGACCTCGACAGAAGAAGTAATGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTACTATGTCAAAATTGTaGAGTGCTGTCCATTCCGAT +
Preference number: 4 (lower is better)
Translates to: HDHIYTMESSGTVINVSLTMSKL*SAVHSD
Trigger: ATCGGAATGGACAGCACTGCACAATTTTGACATAGT...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR CCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAATGGGTTCAGTTACATaGCAGAAGATGAGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: TIQCILLENIPSSKAQGIMGSVT*QKMREN
Trigger: GTTTTCTCTCATCTTCTGCCATGTAACTGAACCCAT...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCTATCAAAGACATGTTaGGTAAAAGATCAGGATTCT +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTLSKTC*VKDQDS
Trigger: AGAATCCTGATCTTTTACCCAACATGTCTTTGATAG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTCTGAGAAATGTTTACTaGGTATTTGTCAGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTLRNVY*VFVSVH
Trigger: ATGAACACTGACAAATACCCAGTAAACATTTCTCAG...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp GATCTTAATTCAGGATGTTTTTCAACACTACAGACTCCAAAACAACTTCCTCCCCTGAGAAATGTTTACTaGGTATTTGTCAGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: DLNSGCFSTLQTPKQLPPLRNVY*VFVSVH
Trigger: ATGAACACTGACAAATACCCAGTAAACATTTCTCAG...GGGAGGAAGTTGTTTTGGAGTCTGTAGTGTTGAAAAACATCCTGAATTAAGATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCCAGATTCCATGTCTTTaGATTTCTTCTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLQIPCL*ISSLKS
Trigger: AGACTTGAGAGAAGAAATGCAAAGACATGGAATCTG...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR GCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCATCAAAGCAGCAGTCTaGTGTTTCATTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLIKAAV*CFILMN
Trigger: ATTCATCAGAATGAAACAGCAGACTGCTGCTTTGAT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR GCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTATCAAAGCAGCAGTCTaGTGTTTCATTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: HDHIYTMESSGTVINVSLIKAAV*CFILMN
Trigger: ATTCATCAGAATGAAACAGCAGACTGCTGCTTTGAT...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR GCA 90 bp ACAATTCAATGTATTCTCTTAGAAAATATTCCCTCATCCAAGGCTCAGGGAATAATCAAAGCAGCAGTCTaGTGTTTCATTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: TIQCILLENIPSSKAQGIIKAAV*CFILMN
Trigger: ATTCATCAGAATGAAACAGCAGACTGCTGCTTTGAT...TATTCCCTGAGCCTTGGATGAGGGAATATTTTCTAAGAGAATACATTGAATTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTTATCTGCTGTTTCATTaGAAACTTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: HDHIYTMESSGTVINVSLYLLFH*KLHFLG
Trigger: GCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATA...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR CCA 90 bp CATGATCATATATACACTATGGAAAGCTCAGGAACTGTTATCAATGTGTCACTTGGGTTTTCTCTAAGTTaGCATATTTATCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: HDHIYTMESSGTVINVSLGFSLS*HIYHLY
Trigger: GTACAGGTGATAAATATGCCAACTTAGAGAAAACCC...AAGTGACACATTGATAACAGTTCCTGAGCTTTCCATAGTGTATATATGATCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS-3UTR CCA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCGGGTTTTCTCTAAGTTaGCATATTTATCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLGFSLS*HIYHLY
Trigger: GTACAGGTGATAAATATGCCAACTTAGAGAAAACCC...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR CCA 90 bp CTCAGGAACTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCCTGAGAAATGTTTACTaGGTATTTGTCAGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: LRNCYQCVTWNVFNYTFLLRNVY*VFVSVH
Trigger: ATGAACACTGACAAATACCCAGTAAACATTTCTCAG...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGTTCCTGAG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233198.2
ENSMUST00000233547.2
CDS TCA 90 bp CCTGAATCCAGCAGTACACGTCACACTACACATGGACGAGGGAACTaGTGTTCCTTCTGTGGCCCAGTCCAAATCTTCAGATATATGAAG +
Preference number: 5 (lower is better)
Translates to: PESSSTRHTTHGRGN*CSFCGPVQIFRYMK
Trigger: CTTCATATATCTGAAGATTTGGACTGGGCCACAGAAGGAACATCAGTTCCCTCGTCCATGTGTAGTGTGACGTGTACTGCTGGATTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 90 bp CACAATCAAAGCAGCAGTCTGCTGTTTCATTCTGATGAATTTTCCTaGATCCAGCAGTACACGTCACACTACACATGGACGAGGGAACTG +
Preference number: 5 (lower is better)
Translates to: HNQSSSLLFHSDEFS*IQQYTSHYTWTREL
Trigger: CAGTTCCCTCGTCCATGTGTAGTGTGACGTGTACTGCTGGATTCAGGAAAATTCATCAGAATGAAACAGCAGACTGCTGCTTTGATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 90 bp CAGATTCCATGTCTTTGCATTTCTTCTCTCAAGTCTGATAGAAACTaGATACCCTGGTCATCATCTGAGATGACCAGTCCTATCCAGGCC +
Preference number: 5 (lower is better)
Translates to: QIPCLCISSLKSDRN*IPWSSSEMTSPIQA
Trigger: GGCCTGGATAGGACTGGTCATCTCAGATGATGACCAGGGTATTCAGTTTCTATCAGACTTGAGAGAAGAAATGCAAAGACATGGAATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 90 bp TGGGACAAGTGTGTGTCCTTGGTGGCTACCTTTGGTGTCCTAGACTaGATTGACATTTTTAACGAAGTTTTCCATGATGGTCCTGTAAGG +
Preference number: 5 (lower is better)
Translates to: WDKCVSLVATFGVLD*IDIFNEVFHDGPVR
Trigger: CCTTACAGGACCATCATGGAAAACTTCGTTAAAAATGTCAATTCAGTCTAGGACACCAAAGGTAGCCACCAAGGACACACACTTGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CCA 90 bp TATCACCTGTACAACTCACACACTGTTCCATATCTGCTGTTTCATTaGAAACTTCATTTTCTGGGCACCGATCACAATCAAAGCAGCAGT +
Preference number: 5 (lower is better)
Translates to: YHLYNSHTVPYLLFH*KLHFLGTDHNQSSS
Trigger: ACTGCTGCTTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGTTGTACAGGTGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CAA 90 bp GGAATACCCTGTCCTCCCTATGTACCATTAAAGATGTCTTCAGTTTCTTCCCACATATCTGCTGTTTCATaGGAAACTTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: GIPCPPYVPLKMSSVSSHISAVS*ETSFSG
Trigger: CCCAGAAAATGAAGTTTCCAATGAAACAGCAGATAT...GTGGGAAGAAACTGAAGACATCTTTAATGGTACATAGGGAGGACAGGGTATTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CAA 90 bp AACGGCTCAGATAGAACTGCTCTTGTCAGTATGTTTGCTTTTGTGCATGCATTTATATCTGCTGTTTCATaGGAAACTTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: NGSDRTALVSMFAFVHAFISAVS*ETSFSG
Trigger: CCCAGAAAATGAAGTTTCCAATGAAACAGCAGATAT...AAATGCATGCACAAAAGCAAACATACTGACAAGAGCAGTTCTATCTGAGCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CAA 90 bp GTCTTCAGTTTCTTCCCACACAGAACTACCTCTAATTTATTGTTAAGGAGCACTATATCTGCTGTTTCATaGGAAACTTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: VFSFFPHRTTSNLLLRSTISAVS*ETSFSG
Trigger: CCCAGAAAATGAAGTTTCCAATGAAACAGCAGATAT...AGTGCTCCTTAACAATAAATTAGAGGTAGTTCTGTGTGGGAAGAAACTGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS-3UTR CAA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCATATCTGCTGTTTCATaGGAAACTTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLISAVS*ETSFSG
Trigger: CCCAGAAAATGAAGTTTCCAATGAAACAGCAGATAT...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS-3UTR CAA 90 bp TTACCCACCTGTTATCAATGTGTCACTTGGAATGTCTTCAATTATACATTTCTCTGGGTTTTCTCTAAGTaGGCATATTTATCACCTGTA +
Preference number: 5 (lower is better)
Translates to: LPTCYQCVTWNVFNYTFLWVFSK*AYLSPV
Trigger: TACAGGTGATAAATATGCCAACTTAGAGAAAACCCA...GAGAAATGTATAATTGAAGACATTCCAAGTGACACATTGATAACAGGTGGGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233835.2
CDS TCA 72 bp AGCAGTACACGTCACACTACACATGGACGAGGGAACTaGTGTTCCTTCTGTGGCCCAGTCCAAATCTTCAGA +
Preference number: 6 (lower is better)
Translates to: SSTRHTTHGRGN*CSFCGPVQIFR
Trigger: TCTGAAGATTTGGACTGGGCCACAGAAGGAACATCAGTTCCCTCGTCCATGTGTAGTGTGACGTGTACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 72 bp TCTGAGATGACCAGTCCTATCCAGGCCCATCTAAAATaGAGCATCAAGGAGACCATGGCATGGGACAAGTGT +
Preference number: 6 (lower is better)
Translates to: SEMTSPIQAHLK*SIKETMAWDKC
Trigger: ACACTTGTCCCATGCCATGGTCTCCTTGATGCTTCATTTTAGATGGGCCTGGATAGGACTGGTCATCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CAA 90 bp GCCAGGAATGACACAGCTCTTTGGAGGCAGTGGGTTTTCTCTAAGTaGGCATATTTATCACCTGTACAACTCACACACTGTTCCATATCT +
Preference number: 6 (lower is better)
Translates to: ARNDTALWRQWVFSK*AYLSPVQLTHCSIS
Trigger: AGATATGGAACAGTGTGTGAGTTGTACAGGTGATAAATATGCCAACTTAGAGAAAACCCACTGCCTCCAAAGAGCTGTGTCATTCCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CCA 72 bp CACTACACATGGACGAGGGAACTGATGTTCCTTCTGTaGCCCAGTCCAAATCTTCAGATATATGAAGTTGTT +
Preference number: 6 (lower is better)
Translates to: HYTWTRELMFLL*PSPNLQIYEVV
Trigger: AACAACTTCATATATCTGAAGATTTGGACTGGGCCACAGAAGGAACATCAGTTCCCTCGTCCATGTGTAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 72 bp TGGATTTCAGCATGGAAGACACCTGCTGACAGTCATTaGATATTCCTTTGCGTACTTCCGTTTGCTGAGATT +
Preference number: 6 (lower is better)
Translates to: WISAWKTPADSH*IFLCVLPFAEI
Trigger: AATCTCAGCAAACGGAAGTACGCAAAGGAATATTCAATGACTGTCAGCAGGTGTCTTCCATGCTGAAATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CCA 72 bp GGGAAACTGGTCATGGTCACTCAGGTTAGGATTAAATaGTCCAAAGAAAAGCTTTGGTGTCCTAGACTGAAT +
Preference number: 6 (lower is better)
Translates to: GKLVMVTQVRIK*SKEKLWCPRLN
Trigger: ATTCAGTCTAGGACACCAAAGCTTTTCTTTGGACCATTTAATCCTAACCTGAGTGACCATGACCAGTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
CDS CCA 72 bp TTCCATATCTGCTGTTTCATTGGAAACTTCATTTTCTaGGCACCGATCACAATCAAAGCAGCAGTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: FHICCFIGNFIF*APITIKAAVCC
Trigger: ACAGCAGACTGCTGCTTTGATTGTGATCGGTGCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CCA 72 bp ACACAGCTCTTTGGAGGCAGTGGGTTTTCTCTAAGTTaGCATATTTATCACCTGTACAACTCACACACTGTT +
Preference number: 6 (lower is better)
Translates to: TQLFGGSGFSLS*HIYHLYNSHTV
Trigger: AACAGTGTGTGAGTTGTACAGGTGATAAATATGCCAACTTAGAGAAAACCCACTGCCTCCAAAGAGCTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CAA 72 bp TTCTGTGGCCCAGTCCAAATCTTCAGATATATGAAGTaGTTGGCTCTGTTGGAAACAAGGCAAATAGCTTCC +
Preference number: 6 (lower is better)
Translates to: FCGPVQIFRYMK*LALLETRQIAS
Trigger: GGAAGCTATTTGCCTTGTTTCCAACAGAGCCAACAACTTCATATATCTGAAGATTTGGACTGGGCCACAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 72 bp TGTCTTTGCATTTCTTCTCTCAAGTCTGATAGAAACTaGATACCCTGGTCATCATCTGAGATGACCAGTCCT +
Preference number: 6 (lower is better)
Translates to: CLCISSLKSDRN*IPWSSSEMTSP
Trigger: AGGACTGGTCATCTCAGATGATGACCAGGGTATTCAGTTTCTATCAGACTTGAGAGAAGAAATGCAAAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 72 bp GTAAATATCCTGGATTTCAGCATGGAAGACACCTGCTaGCAGTCATTGAATATTCCTTTGCGTACTTCCGTT +
Preference number: 6 (lower is better)
Translates to: VNILDFSMEDTC*QSLNIPLRTSV
Trigger: AACGGAAGTACGCAAAGGAATATTCAATGACTGTCAGCAGGTGTCTTCCATGCTGAAATCCAGGATATTTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS TCA 72 bp TGTGTGTCCTTGGTGGCTACCTTTGGTGTCCTAGACTaGATTGACATTTTTAACGAAGTTTTCCATGATGGT +
Preference number: 6 (lower is better)
Translates to: CVSLVATFGVLD*IDIFNEVFHDG
Trigger: ACCATCATGGAAAACTTCGTTAAAAATGTCAATTCAGTCTAGGACACCAAAGGTAGCCACCAAGGACACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CAA 72 bp TGTGGCCCAGTCCAAATCTTCAGATATATGAAGTTGTaGGCTCTGTTGGAAACAAGGCAAATAGCTTCCTAT +
Preference number: 6 (lower is better)
Translates to: CGPVQIFRYMKL*ALLETRQIASY
Trigger: ATAGGAAGCTATTTGCCTTGTTTCCAACAGAGCCAACAACTTCATATATCTGAAGATTTGGACTGGGCCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CAA 72 bp GTACAACTCACACACTGTTCCATATCTGCTGTTTCATaGGAAACTTCATTTTCTGGGCACCGATCACAATCA +
Preference number: 6 (lower is better)
Translates to: VQLTHCSISAVS*ETSFSGHRSQS
Trigger: TGATTGTGATCGGTGCCCAGAAAATGAAGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGTTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2
CDS CAA 72 bp AGAATGCGGTTATTGGCCTTCACAATGGGAGTATCCTaGTACTTCACAAAAGTGACTAGTACTAGACTTGTG +
Preference number: 6 (lower is better)
Translates to: RMRLLAFTMGVS*YFTKVTSTRLV
Trigger: CACAAGTCTAGTACTAGTCACTTTTGTGAAGTACAAGGATACTCCCATTGTGAAGGCCAATAACCGCATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000170419.3
ENSMUST00000233198.2
ENSMUST00000233547.2
ENSMUST00000233835.2