Pregenerated sensors for VMN2R89 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070448Ensembl transcript IDs: ENSMUST00000159611.10, ENSMUST00000159734.4, ENSMUST00000239412.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATGACTACCTTCCCATGTTCAGATTGTATATCTCTGTCAATAAATaGAGGAGATGTTACCAACCAGATTCCACAGAGAACAAGTTGGAT | + |
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Preference number: 1 (lower is better) Translates to: NDYLPMFRLYISVNK*RRCYQPDSTENKLD Trigger: ATCCAACTTGTTCTCTGTGGAATCTGGTTGGTAACATCTCCTCCATTTATTGACAGAGATATACAATCTGAACATGGGAAGGTAGTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR GCA 90 bp | ATGCAGGTGACCTGGTCAGGATGTCCAATGAAGAGCAGGGAGCAGAGAAAACAGAGAAGGATAGTGCCATaGAGCCTAGAGCCATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: MQVTWSGCPMKSREQRKQRRIVP*SLEPSP Trigger: TGGGGATGGCTCTAGGCTGCATGGCACTATCCTTCT...CTGTTTTCTCTGCTCCCTGCTCTTCATTGGACATCCTGACCAGGTCACCTGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR TCA 90 bp | AACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGGCTGCAAGATGCAGGTaGCCTGGTCAGGATGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: NLGAPVTNIPLILLPGVVAARCR*PGQDVQ Trigger: TTGGACATCCTGACCAGGTCACCTGCATCTTGCAGC...CACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR TCA 90 bp | ATGACCAACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGCTGCAAGATGCAGGTaGCCTGGTCAGGATGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: MTNLGAPVTNIPLILLPGAARCR*PGQDVQ Trigger: TTGGACATCCTGACCAGGTCACCTGCATCTTGCAGC...TCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTTGGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGAATGCGGTTATTGGCCTTCACAATGGGAGTATTCTTGTACTTCACAAAAGAAGGATAGTGCCATaGAGCCTAGAGCCATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: AENAVIGLHNGSILVLHKRRIVP*SLEPSP Trigger: TGGGGATGGCTCTAGGCTGCATGGCACTATCCTTCT...TTTGTGAAGTACAAGAATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR TCA 90 bp | ACCCATTCCTCAATTGAGATTCCCAGTTCTAAACATATTCATGTTTGCTGTCCACCAAGAAAGCCAAAGTaGAGCTCCCCAGAGCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: THSSIEIPSSKHIHVCCPPRKPK*SSPEPR Trigger: CCTTGGCTCTGGGGAGCTTCACTTTGGCTTTCTTGG...TGGACAGCAAACATGAATATGTTTAGAACTGGGAATCTCAATTGAGGAATGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CCA 90 bp | GGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACTTGAGGTTTGTTCTATGTTaGCATACTTATCATCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: GAPVTNIPLILLPGVVNLRFVLC*HTYHLD Trigger: GTCCAGATGATAAGTATGCCAACATAGAACAAACCT...CAAGTTCACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 90 bp | CCCAAGTATCCCAGGACAATGTGGAAGGCAATGACAGAGCCTTTATaGCAAAGAATGACTACCTTCCCATGTTCAGATTGTATATCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PKYPRTMWKAMTEPL*QRMTTFPCSDCISL Trigger: CAGAGATATACAATCTGAACATGGGAAGGTAGTCATTCTTTGCAATAAAGGCTCTGTCATTGCCTTCCACATTGTCCTGGGATACTTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CCA 90 bp | GCTGAGAATGCGGTTATTGGCCTTCACAATGGGAGTATTCTTGTACTTCACAAAAGGTTTGTTCTATGTTaGCATACTTATCATCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: AENAVIGLHNGSILVLHKRFVLC*HTYHLD Trigger: GTCCAGATGATAAGTATGCCAACATAGAACAAACCT...TTTGTGAAGTACAAGAATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CCA 90 bp | ACCCATTCCTCAATTGAGATTCCCAGTTCTAAACATATTCATGTTTGCTGTCCATCTCATCCTTCTTCCTaGAGTAGTGAACTTGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: THSSIEIPSSKHIHVCCPSHPSS*SSELES Trigger: GCTTTCAAGTTCACTACTCCAGGAAGAAGGATGAGA...TGGACAGCAAACATGAATATGTTTAGAACTGGGAATCTCAATTGAGGAATGGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 90 bp | CATGAAATTGGATGCAAGAACTCCATGAAAGCAAGAGGGATAATGTaGATTACTGGTTTCATGTCCATTTTGTATGCAGTACCCTATCTT | + |
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Preference number: 2 (lower is better) Translates to: HEIGCKNSMKARGIM*ITGFMSILYAVPYL Trigger: AAGATAGGGTACTGCATACAAAATGGACATGAAACCAGTAATCAACATTATCCCTCTTGCTTTCATGGAGTTCTTGCATCCAATTTCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR TCA 90 bp | ATGATACCCATTCCTCAATTGAGATTCCCAGTTCTAAACATATTCATGTTTGCTAGAACACCAGCATGCTaGAAGTTAGGAATTTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: MIPIPQLRFPVLNIFMFARTPAC*KLGIWL Trigger: AAGCCAAATTCCTAACTTTCAGCATGCTGGTGTTCT...AGCAAACATGAATATGTTTAGAACTGGGAATCTCAATTGAGGAATGGGTATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CCA 90 bp | ATGATACCCATTCCTCAATTGAGATTCCCAGTTCTAAACATATTCATGTTTGCTTCTCATCCTTCTTCCTaGAGTAGTGAACTTGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: MIPIPQLRFPVLNIFMFASHPSS*SSELES Trigger: GCTTTCAAGTTCACTACTCCAGGAAGAAGGATGAGA...AGCAAACATGAATATGTTTAGAACTGGGAATCTCAATTGAGGAATGGGTATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR GCA 72 bp | ACAGACACAGTGAAAAATACTCCAAATGTGGTCTGCTaGAAGATGCAGGTGACCTGGTCAGGATGTCCAATG | + |
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Preference number: 3 (lower is better) Translates to: TDTVKNTPNVVC*KMQVTWSGCPM Trigger: CATTGGACATCCTGACCAGGTCACCTGCATCTTGCAGCAGACCACATTTGGAGTATTTTTCACTGTGTCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CAA 90 bp | GGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACTTGACAATGGGAGTATTCTaGTACTTCACAAATGTGACT | + |
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Preference number: 3 (lower is better) Translates to: GAPVTNIPLILLPGVVNLTMGVF*YFTNVT Trigger: AGTCACATTTGTGAAGTACAAGAATACTCCCATTGT...CAAGTTCACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CAA 90 bp | ATGACCAACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAACCACAGTTATTGTTTaGGCCAACACTGTAGAAACA | + |
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Preference number: 3 (lower is better) Translates to: MTNLGAPVTNIPLILLPGTTVIV*ANTVET Trigger: TGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGT...TCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTTGGTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CCA 72 bp | GGAGATGTTACCAACCAGATTCCACAGAGAACAAGTTaGATTAGGGTACAAATGGGAATGACCAACTTAGGT | + |
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Preference number: 3 (lower is better) Translates to: GDVTNQIPQRTS*IRVQMGMTNLG Trigger: ACCTAAGTTGGTCATTCCCATTTGTACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTGGTAACATCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CCA 72 bp | CTTCCCATGTTCAGATTGTATATCTCTGTCAATAAATaGAGGAGATGTTACCAACCAGATTCCACAGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: LPMFRLYISVNK*RRCYQPDSTEN Trigger: GTTCTCTGTGGAATCTGGTTGGTAACATCTCCTCCATTTATTGACAGAGATATACAATCTGAACATGGGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR-3UTR CAA 90 bp | AACACTGTAGAAACAGACACAGTGAAAAATACTCCAAATGTGGTCTGCTGCAAGACAATGGGAGTATTCTaGTACTTCACAAATGTGACT | + |
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Preference number: 3 (lower is better) Translates to: NTVETDTVKNTPNVVCCKTMGVF*YFTNVT Trigger: AGTCACATTTGTGAAGTACAAGAATACTCCCATTGT...CTTGCAGCAGACCACATTTGGAGTATTTTTCACTGTGTCTGTTTCTACAGTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR GCA 72 bp | GATAATGTTGATTACTGGTTTCATGTCCATTTTGTATaGAGTACCCTATCTTATAACTCAAGGACAGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: DNVDYWFHVHFV*STLSYNSRTVC Trigger: GCACACTGTCCTTGAGTTATAAGATAGGGTACTGCATACAAAATGGACATGAAACCAGTAATCAACATTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR CCA 90 bp | ATTGTGATGGCCGAGAAGGATAGTGCCATGCAGCCTAGAGCCATCCCCAGTGGTGGAATCTCAACTTTGTaGTGTGCAAAAGTGATAGGG | + |
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Preference number: 4 (lower is better) Translates to: IVMAEKDSAMQPRAIPSGGISTL*CAKVIG Trigger: CCCTATCACTTTTGCACACCACAAAGTTGAGATTCC...ACCACTGGGGATGGCTCTAGGCTGCATGGCACTATCCTTCTCGGCCATCACAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR GCA 90 bp | GGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACTTGCTCAACTTTGTGGTGTaGAAAAGTGATAGGGCCATG | + |
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Preference number: 4 (lower is better) Translates to: GAPVTNIPLILLPGVVNLLNFVV*KSDRAM Trigger: CATGGCCCTATCACTTTTGCACACCACAAAGTTGAG...CAAGTTCACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | ATGCAGGTGACCTGGTCAGGATGTCCAATGAAGAGCAGGGAGCAGAGAAAACAGCCTGCTGACAAACAGTaGAATATCTGTTGTGTTCTA | + |
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Preference number: 4 (lower is better) Translates to: MQVTWSGCPMKSREQRKQPADKQ*NICCVL Trigger: TAGAACACAACAGATATTTCACTGTTTGTCAGCAGG...CTGTTTTCTCTGCTCCCTGCTCTTCATTGGACATCCTGACCAGGTCACCTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159611.10 |
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| CDS-3UTR GCA 90 bp | GGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACTTGGCTAAACAGATCCCATaGCTTTGGCTTTCTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GAPVTNIPLILLPGVVNLAKQIP*LWLSSL Trigger: AAGAGAAGAAAGCCAAAGGCATGGGATCTGTTTAGC...CAAGTTCACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | AAATACTCCAAATGTGGTCTGCTGCAAGATGCAGGTGACCTGGTCAGGATGTCCTCAAACAGCACAAGATaGGAGAAAACTTCAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: KYSKCGLLQDAGDLVRMSSNSTR*EKTSET Trigger: TGTCTCTGAAGTTTTCTCTCATCTTGTGCTGTTTGA...GGACATCCTGACCAGGTCACCTGCATCTTGCAGCAGACCACATTTGGAGTATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | GGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACTTGCAAGTCCATCTAAAATaGAACATCAAGGAGACCATG | + |
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Preference number: 4 (lower is better) Translates to: GAPVTNIPLILLPGVVNLQVHLK*NIKETM Trigger: CATGGTCTCCTTGATGTTTCATTTTAGATGGACTTG...CAAGTTCACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR GCA 90 bp | ATGACCAACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGCTAAACAGATCCCATaGCTTTGGCTTTCTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: MTNLGAPVTNIPLILLPGAKQIP*LWLSSL Trigger: AAGAGAAGAAAGCCAAAGGCATGGGATCTGTTTAGC...TCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTTGGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | ATGACCAACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAAAGGAAGATACCTGCTaGCAAACAGTGAAATATCTG | + |
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Preference number: 4 (lower is better) Translates to: MTNLGAPVTNIPLILLPGKEDTC*QTVKYL Trigger: CAGATATTTCACTGTTTGTCAGCAGGTATCTTCCTT...TCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTTGGTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159611.10 |
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| CDS-3UTR CCA 90 bp | AACTTAGGTGCACCTGTTACCAACATCCCTCTCATCCTTCTTCCTGGAGTAGTGAACCTTCATCACTCATaGCCATATCATAGTTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: NLGAPVTNIPLILLPGVVNLHHS*PYHSCA Trigger: TGCACAACTATGATATGGCCATGAGTGATGAAGGTT...CACTACTCCAGGAAGAAGGATGAGAGGGATGTTGGTAACAGGTGCACCTAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 72 bp | CCCAGGACAATGTGGAAGGCAATGACAGAGCCTTTATaGCAAAGAATGACTACCTTCCCATGTTCAGATTGT | + |
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Preference number: 4 (lower is better) Translates to: PRTMWKAMTEPL*QRMTTFPCSDC Trigger: ACAATCTGAACATGGGAAGGTAGTCATTCTTTGCAATAAAGGCTCTGTCATTGCCTTCCACATTGTCCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 72 bp | CCAGTGGTTCTTCAAAAGCCAGAAATGATACAGCTCTaGAGAGGCAGTAGGTTTGTTCTATGTTGGCATACT | + |
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Preference number: 4 (lower is better) Translates to: PVVLQKPEMIQL*RGSRFVLCWHT Trigger: AGTATGCCAACATAGAACAAACCTACTGCCTCTCAAGAGCTGTATCATTTCTGGCTTTTGAAGAACCACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR GCA 90 bp | GCTGAGAATGCGGTTATTGGCCTTCACAATGGGAGTATTCTTGTACTTCACAAACCTCCAAAAGCAACTTaGTTCAGTCAAACAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: AENAVIGLHNGSILVLHKPPKAT*FSQTAQ Trigger: TTGTGCTGTTTGACTGAAGCAAGTTGCTTTTGGAGG...TTTGTGAAGTACAAGAATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR CCA 90 bp | GCTGAGAATGCGGTTATTGGCCTTCACAATGGGAGTATTCTTGTACTTCACAAAGGAATCTCAACTTTGTaGTGTGCAAAAGTGATAGGG | + |
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Preference number: 4 (lower is better) Translates to: AENAVIGLHNGSILVLHKGISTL*CAKVIG Trigger: CCCTATCACTTTTGCACACCACAAAGTTGAGATTCC...TTTGTGAAGTACAAGAATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR GCA 90 bp | TTGTACTTCACAAATGTGACTAGTACTAGAATTGTGATGGCCGAGAAGGATAGTCCTCCAAAAGCAACTTaGTTCAGTCAAACAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: LYFTNVTSTRIVMAEKDSPPKAT*FSQTAQ Trigger: TTGTGCTGTTTGACTGAAGCAAGTTGCTTTTGGAGG...ACTATCCTTCTCGGCCATCACAATTCTAGTACTAGTCACATTTGTGAAGTACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR CCA 90 bp | GGAGTATTCTTGTACTTCACAAATGTGACTAGTACTAGAATTGTGATGGCCGAGAACCTTCATCACTCATaGCCATATCATAGTTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GVFLYFTNVTSTRIVMAENLHHS*PYHSCA Trigger: TGCACAACTATGATATGGCCATGAGTGATGAAGGTT...CTCGGCCATCACAATTCTAGTACTAGTCACATTTGTGAAGTACAAGAATACTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | ACCCATTCCTCAATTGAGATTCCCAGTTCTAAACATATTCATGTTTGCTGTCCATCAAACAGCACAAGATaGGAGAAAACTTCAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: THSSIEIPSSKHIHVCCPSNSTR*EKTSET Trigger: TGTCTCTGAAGTTTTCTCTCATCTTGTGCTGTTTGA...TGGACAGCAAACATGAATATGTTTAGAACTGGGAATCTCAATTGAGGAATGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR TCA 90 bp | AACACTGTAGAAACAGACACAGTGAAAAATACTCCAAATGTGGTCTGCTGCAAGTCTGCTGACAAACAGTaGAATATCTGTTGTGTTCTA | + |
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Preference number: 4 (lower is better) Translates to: NTVETDTVKNTPNVVCCKSADKQ*NICCVL Trigger: TAGAACACAACAGATATTTCACTGTTTGTCAGCAGA...CTTGCAGCAGACCACATTTGGAGTATTTTTCACTGTGTCTGTTTCTACAGTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159734.4 |
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| CDS-3UTR CCA 90 bp | AACACTGTAGAAACAGACACAGTGAAAAATACTCCAAATGTGGTCTGCTGCAAGAAAGTGATAGGGCCATaGAAGAGATTAAGAGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: NTVETDTVKNTPNVVCCKKVIGP*KRLRVN Trigger: ATTCACTCTTAATCTCTTCCATGGCCCTATCACTTT...CTTGCAGCAGACCACATTTGGAGTATTTTTCACTGTGTCTGTTTCTACAGTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 72 bp | GGATGCAAGAACTCCATGAAAGCAAGAGGGATAATGTaGATTACTGGTTTCATGTCCATTTTGTATGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: GCKNSMKARGIM*ITGFMSILYAV Trigger: TACTGCATACAAAATGGACATGAAACCAGTAATCAACATTATCCCTCTTGCTTTCATGGAGTTCTTGCATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| 3UTR CAA 72 bp | AGAGGGATAATGTTGATTACTGGTTTCATGTCCATTTaGTATGCAGTACCCTATCTTATAACTCAAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: RGIMLITGFMSI*YAVPYLITQGQ Trigger: CTGTCCTTGAGTTATAAGATAGGGTACTGCATACAAAATGGACATGAAACCAGTAATCAACATTATCCCTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR CAA 90 bp | ATTGTGATGGCCGAGAAGGATAGTGCCATGCAGCCTAGAGCCATCCCCAGTGGTAGAAAACCATTGGTATaGAAGAATCCATTGCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: IVMAEKDSAMQPRAIPSGRKPLV*KNPLPV Trigger: AACTGGCAATGGATTCTTCAATACCAATGGTTTTCT...ACCACTGGGGATGGCTCTAGGCTGCATGGCACTATCCTTCTCGGCCATCACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS-3UTR CAA 90 bp | ATGCAGGTGACCTGGTCAGGATGTCCAATGAAGAGCAGGGAGCAGAGAAAACAGAGAAAACCATTGGTATaGAAGAATCCATTGCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: MQVTWSGCPMKSREQRKQRKPLV*KNPLPV Trigger: AACTGGCAATGGATTCTTCAATACCAATGGTTTTCT...CTGTTTTCTCTGCTCCCTGCTCTTCATTGGACATCCTGACCAGGTCACCTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 |
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| CDS TCA 90 bp | CACAATCAAAGCAGCAGTCTGCTGTTTCTTTTTGATAAATTTTCCTaGATCCAGCAGTACATGCCACACTACACACGGAGGAGGGAACTG | + |
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Preference number: 5 (lower is better) Translates to: HNQSSSLLFLFDKFS*IQQYMPHYTRRREL Trigger: CAGTTCCCTCCTCCGTGTGTAGTGTGGCATGTACTGCTGGATTCAGGAAAATTTATCAAAAAGAAACAGCAGACTGCTGCTTTGATTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS TCA 90 bp | TGGTCATCATCTGAGATGACCAGTCCTATCCAAGTCCATCTAAAATaGAACATCAAGGAGACCATGCCATGGGATAAATGTGTGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: WSSSEMTSPIQVHLK*NIKETMPWDKCVSL Trigger: CAAGGACACACATTTATCCCATGGCATGGTCTCCTTGATGTTTCATTTTAGATGGACTTGGATAGGACTGGTCATCTCAGATGATGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 90 bp | CACACACATTTACAACTATGTGTCTGTTTTAAGGCTACTGCTGTCTaGAGATCCACTTATTATATTCACAGTTCCTTTCCATTCCTCCTA | + |
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Preference number: 5 (lower is better) Translates to: HTHLQLCVCFKATAV*RSTYYIHSSFPFLL Trigger: TAGGAGGAATGGAAAGGAACTGTGAATATAATAAGTGGATCTCCAGACAGCAGTAGCCTTAAAACAGACACATAGTTGTAAATGTGTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS GCA 90 bp | ATCTCCATCACTATCTTCACTATTCTTTATCCTCCAAAAGCAACTTaGTTCAGTCAAACAGCACAAGATGAGAGAAAACTTCAGAGACAA | + |
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Preference number: 5 (lower is better) Translates to: ISITIFTILYPPKAT*FSQTAQDERKLQRQ Trigger: TTGTCTCTGAAGTTTTCTCTCATCTTGTGCTGTTTGACTGAAGCAAGTTGCTTTTGGAGGATAAAGAATAGTGAAGATAGTGATGGAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | TCAAGGAGACCATGCCATGGGATAAATGTGTGTCCTTaGGGGCTACCTGATGGACATGGGGCAGCCGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SRRPCHGINVCP*GLPDGHGAAGH Trigger: ATGACCGGCTGCCCCATGTCCATCAGGTAGCCCCCAAGGACACACATTTATCCCATGGCATGGTCTCCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | CACTACACACGGAGGAGGGAACTGATGTTCCTCCCATaGCCCATTCCAAATCATCAGATATATGAAGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: HYTRRRELMFLP*PIPNHQIYEVV Trigger: AACAACTTCATATATCTGATGATTTGGAATGGGCCATGGGAGGAACATCAGTTCCCTCCTCCGTGTGTAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS CAA 72 bp | TCTGTTGTGTTCTACCTTTTTCTGAGACTCTACTTGTaGAAGAATGTGTTCATGGTAGGTGTGGGCCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: SVVFYLFLRLYL*KNVFMVGVGRN Trigger: GTTGCGGCCCACACCTACCATGAACACATTCTTCAACAAGTAGAGTCTCAGAAAAAGGTAGAACACAACAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS TCA 72 bp | TGCCTTTGGCTTTCTTCTCTTAAATCTGAGAGAAACTaGATACCCTGGTCATCATCTGAGATGACCAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: CLWLSSLKSERN*IPWSSSEMTSP Trigger: AGGACTGGTCATCTCAGATGATGACCAGGGTATTCAGTTTCTCTCAGATTTAAGAGAAGAAAGCCAAAGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS TCA 72 bp | TCTGAGATGACCAGTCCTATCCAAGTCCATCTAAAATaGAACATCAAGGAGACCATGCCATGGGATAAATGT | + |
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Preference number: 6 (lower is better) Translates to: SEMTSPIQVHLK*NIKETMPWDKC Trigger: ACATTTATCCCATGGCATGGTCTCCTTGATGTTTCATTTTAGATGGACTTGGATAGGACTGGTCATCTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS GCA 72 bp | ACCTTCATCACTCATGGCCATATCATAGTTGTGCAGTaGTGTCCATTCCAATGTGTTGTTGGATGTAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: TFITHGHIIVVQ*CPFQCVVGCKK Trigger: CTTTTTACATCCAACAACACATTGGAATGGACAGCACTGCACAACTATGATATGGCCATGAGTGATGAAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | CTGTTCTATATCTGTTTCATTGGAAACCTCATTTTCTaGGCACTGAACACAATCAAAGCAGCAGTCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: LFYICFIGNLIF*ALNTIKAAVCC Trigger: ACAGCAGACTGCTGCTTTGATTGTGTTCAGTGCCCAGAAAATGAGGTTTCCAATGAAACAGATATAGAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS CAA 90 bp | AGTGAAATATCTGTTGTGTTCTACCTTTTTCTGAGACTCTACTTGTaGAAGAATGTGTTCATGGTAGGTGTGGGCCGCAACATAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: SEISVVFYLFLRLYL*KNVFMVGVGRNINS Trigger: GCTGTTTATGTTGCGGCCCACACCTACCATGAACACATTCTTCAACAAGTAGAGTCTCAGAAAAAGGTAGAACACAACAGATATTTCACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | CTGGACATTTCACACACTGTTCTATATCTGTTTCATTaGAAACCTCATTTTCTGGGCACTGAACACAATCAA | + |
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Preference number: 6 (lower is better) Translates to: LDISHTVLYLFH*KPHFLGTEHNQ Trigger: TTGATTGTGTTCAGTGCCCAGAAAATGAGGTTTCCAATGAAACAGATATAGAACAGTGTGTGAAATGTCCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS TCA 72 bp | TGGTTTTCATCAAGGAAGATACCTGCTGACAAACAGTaGAATATCTGTTGTGTTCTACCTTTTTCTGAGACT | + |
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Preference number: 6 (lower is better) Translates to: WFSSRKIPADKQ*NICCVLPFSET Trigger: AGTCTCAGAAAAAGGTAGAACACAACAGATATTTCACTGTTTGTCAGCAGGTATCTTCCTTGATGAAAACCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | TTACAACTATGTGTCTGTTTTAAGGCTACTGCTGTCTaGAGATCCACTTATTATATTCACAGTTCCTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: LQLCVCFKATAV*RSTYYIHSSFP Trigger: TGGAAAGGAACTGTGAATATAATAAGTGGATCTCCAGACAGCAGTAGCCTTAAAACAGACACATAGTTGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS CAA 90 bp | GTGTTCATTGTTTGCATAAAATTCCTTAATTTAGGAATCTCAACTTaGTGGTGTGCAAAAGTGATAGGGCCATGGAAGAGATTAAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: VFIVCIKFLNLGIST*WCAKVIGPWKRLRV Trigger: CACTCTTAATCTCTTCCATGGCCCTATCACTTTTGCACACCACAAAGTTGAGATTCCTAAATTAAGGAATTTTATGCAAACAATGAACAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159611.10 ENSMUST00000159734.4 ENSMUST00000239412.2 |
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| CDS CCA 72 bp | GCAGTAGGTTTGTTCTATGTTGGCATACTTATCATCTaGACATTTCACACACTGTTCTATATCTGTTTCATT | + |
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Preference number: 6 (lower is better) Translates to: AVGLFYVGILII*TFHTLFYICFI Trigger: AATGAAACAGATATAGAACAGTGTGTGAAATGTCCAGATGATAAGTATGCCAACATAGAACAAACCTACTGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239412.2 |
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| CDS CAA 72 bp | CATGGCCCATTCCAAATCATCAGATATATGAAGTTGTaGACTCTTTGGAAAACAAGGTATATAGCTTCCTAT | + |
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Preference number: 6 (lower is better) Translates to: HGPFQIIRYMKL*TLWKTRYIASY Trigger: ATAGGAAGCTATATACCTTGTTTTCCAAAGAGTCAACAACTTCATATATCTGATGATTTGGAATGGGCCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159611.10 ENSMUST00000239412.2 |
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