Pregenerated sensors for VMN2R87 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091511Ensembl transcript IDs: ENSMUST00000164227.4
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTTCATAGAACATGGTAAATTTTTCCAATTTCCTGGGCCCCTGTaGTGGCCCTCAACAATATGCAATGCTGTAACTAAGCACGATAAA | + |
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Preference number: 1 (lower is better) Translates to: IFIEHGKFFQFPGPL*WPSTICNAVTKHDK Trigger: TTTATCGTGCTTAGTTACAGCATTGCATATTGTTGAGGGCCATCACAGGGGCCCAGGAAATTGGAAAAATTTACCATGTTCTATGAAGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| 3UTR GCA 90 bp | CCCATCCTATCTACAGTCTTCTTTCATATACCTTCTAGAACAACTTaGTTACAGGTGCTACTGTCTATAGACAGTAGGGTCACCATATAT | + |
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Preference number: 1 (lower is better) Translates to: PILSTVFFHIPSRTT*LQVLLSIDSRVTIY Trigger: ATATATGGTGACCCTACTGTCTATAGACAGTAGCACCTGTAAGCAAGTTGTTCTAGAAGGTATATGAAAGAAGACTGTAGATAGGATGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| 3UTR TCA 90 bp | ATATGGGAAAGTGTTATTTCTCTATGTACCTTGGTCACAATTAACTaGAAGAAGCCAAGACAAGAAAATGGATGCAGTAACTCAGTCAAA | + |
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Preference number: 1 (lower is better) Translates to: IWESVISLCTLVTIN*KKPRQENGCSNSVK Trigger: TTTGACTGAGTTACTGCATCCATTTTCTTGTCTTGGCTTCTTTCAGTTAATTGTGACCAAGGTACATAGAGAAATAACACTTTCCCATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| 3UTR TCA 72 bp | GATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTaGTTACTGGCTTCATGCCCATCCTATCTACAGTCT | + |
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Preference number: 3 (lower is better) Translates to: DAVTQSKSMEKC*LLASCPSYLQS Trigger: AGACTGTAGATAGGATGGGCATGAAGCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| 3UTR GCA 72 bp | TCTACAGTCTTCTTTCATATACCTTCTAGAACAACTTaGTTACAGGTGCTACTGTCTATAGACAGTAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: STVFFHIPSRTT*LQVLLSIDSRV Trigger: GACCCTACTGTCTATAGACAGTAGCACCTGTAAGCAAGTTGTTCTAGAAGGTATATGAAAGAAGACTGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| 3UTR TCA 72 bp | AGTGTTATTTCTCTATGTACCTTGGTCACAATTAACTaGAAGAAGCCAAGACAAGAAAATGGATGCAGTAAC | + |
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Preference number: 3 (lower is better) Translates to: SVISLCTLVTIN*KKPRQENGCSN Trigger: GTTACTGCATCCATTTTCTTGTCTTGGCTTCTTTCAGTTAATTGTGACCAAGGTACATAGAGAAATAACACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR GCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGAGGAGGACAGTGCCATaGTTCCTAGAACCATCCCCA | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIERRTVP*FLEPSP Trigger: TGGGGATGGTTCTAGGAAGCATGGCACTGTCCTCCT...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | GAAAATGGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCACCCTGGTCATCATCTaGAATGACCAGTCCTATCCA | + |
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Preference number: 4 (lower is better) Translates to: ENGCSNSVKVHGKMLITGTLVII*NDQSYP Trigger: TGGATAGGACTGGTCATTTCAGATGATGACCAGGGT...GCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCCATTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGATGTCACACTGCACATaGAGGAGGGTACTAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIEMSHCT*RRVLMF Trigger: GAACATTAGTACCCTCCTCCATGTGCAGTGTGACAT...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGTTCATAAGCCAGAAATaGCACAGTTCTTTGGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIEFISQK*HSSLEA Trigger: TGCCTCCAAAGAACTGTGTCATTTCTGGCTTATGAA...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | ACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAAAATGACACAGTTCTTTaGAGGCAGTGGGATTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TTGENDGSHSSIEISGSQNDTVL*RQWDCS Trigger: AGAGCAATCCCACTGCCTCCAAAGAACTGTGTCATT...TTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | GGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCTTCATGGACATTTACCACCAATaGCAGAGAATACCAAAGATG | + |
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Preference number: 4 (lower is better) Translates to: GCSNSVKVHGKMLITGFMDIYHQ*QRIPKM Trigger: CATCTTTGGTATTCTCTGTCATTGGTGGTAAATGTC...CATGAAGCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGAGTCCCAAAGAATCTTaGCATTTACCACCAATGACA | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIESPKES*HLPPMT Trigger: TGTCATTGGTGGTAAATGTCAAGATTCTTTGGGACT...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGTTGGTCATCATCTGAAATaGCCAGTCCTATCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: NDGSHSSIEISGSQHIQVGHHLK*PVLSKS Trigger: GGACTTGGATAGGACTGGTCATTTCAGATGATGACC...AACCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGTGCTGTCCATTCCAATaGGTTTTTGCATGTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIECCPFQ*VFACEM Trigger: CATTTCACATGCAAAAACCCATTGGAATGGACAGCA...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | AAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGGTTCTTTGGAGGCAGTaGGATTGCTCTAAGTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: KMMVAIPQLRFLVLNIFRVLWRQ*DCSKLA Trigger: TGCCAACTTAGAGCAATCCCACTGCCTCCAAAGAAC...CCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | AAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGAGGATGCAGGTGACCTaGTTGGGATGTTCAATGAAG | + |
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Preference number: 4 (lower is better) Translates to: KMMVAIPQLRFLVLNIFRRMQVT*LGCSMK Trigger: CTTCATTGAACATCCCAACCAGGTCACCTGCATCCT...CCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | ACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACACCTCAGTACTGACTaGGAAATGTTTATTGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: TTGENDGSHSSIEISGSQHLSTD*EMFIGY Trigger: ATACCCAATAAACATTTCTCAGTCAGTACTGAGGTG...TTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGTTAAGGGAGCCAACTGCTaGCATTCTGTGTATTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: NDGSHSSIEISGSQHIQVKGANC*HSVYFP Trigger: AGGAAAATACACAGAATGTCAGCAGTTGGCTCCCTT...AACCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGCTAATGTTCCTCCTGTaGCCCATTCTAAATCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: KMMVAIPQLRFLVLNIFRLMFLL*PILNLR Trigger: CCGAAGATTTAGAATGGGTCACAGGAGGAACATTAG...CCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGCAACATGGAAGGCAATaGCAGAGCCTTTGTTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KMMVAIPQLRFLVLNIFRQHGRQ*QSLCCK Trigger: TTTGCAACAAAGGCTCTGTCATTGCCTTCCATGTTG...CCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR GCA 90 bp | AAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGGTCATAGTTGTGCAGTaGTGTCCATTCCAATGGGTT | + |
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Preference number: 4 (lower is better) Translates to: KMMVAIPQLRFLVLNIFRVIVVQ*CPFQWV Trigger: AACCCATTGGAATGGACAGCACTGCACAACTATGAC...CCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGTTGATATATGTAGTTGTTaGCTCCGTGGGAAACAAGGA | + |
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Preference number: 4 (lower is better) Translates to: NDGSHSSIEISGSQHIQVDICSC*LRGKQG Trigger: TCCTTGTTTCCCACGGAGTCAACAACTACATATATC...AACCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR GCA 90 bp | GGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCTTCATGAAACCACACTCACTTTaGAACTCTCCATCATTATAT | + |
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Preference number: 4 (lower is better) Translates to: GCSNSVKVHGKMLITGFMKPHSL*NSPSLY Trigger: ATATAATGATGGAGAGTTGCAAAGTGAGTGTGGTTT...CATGAAGCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CCA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGCTCGTATTCACTTGCTaGTATTCTAAAATCAAACCT | + |
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Preference number: 4 (lower is better) Translates to: WLTDKTTGENDGSHSSIELVFTC*YSKIKP Trigger: AGGTTTGATTTTAGAATACCAGCAAGTGAATACGAG...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR TCA 90 bp | AATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGTTATTCCACCTCAGTACTaGCTGAGAAATGTTTATTGG | + |
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Preference number: 4 (lower is better) Translates to: NDGSHSSIEISGSQHIQVIPPQY*LRNVYW Trigger: CCAATAAACATTTCTCAGTCAGTACTGAGGTGGAAT...AACCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 90 bp | ACTGTAGAAACAGCCACAGTGAAAAATAGTCCAAATGTGGTCTGCTaGAGGATGCAGGTGACCTGGTTGGGATGTTCAATGAAGAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: TVETATVKNSPNVVC*RMQVTWLGCSMKSN Trigger: ATTGCTCTTCATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGGACTATTTTTCACTGTGGCTGTTTCTACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 90 bp | GTGAAAAATAGTCCAAATGTGGTCTGCTGCAGGATGCAGGTGACCTaGTTGGGATGTTCAATGAAGAGCAATGAGCAGAGAAAGCAAAAG | + |
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Preference number: 5 (lower is better) Translates to: VKNSPNVVCCRMQVT*LGCSMKSNEQRKQK Trigger: CTTTTGCTTTCTCTGCTCATTGCTCTTCATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGGACTATTTTTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS TCA 90 bp | TGGTCATCATCTGAAATGACCAGTCCTATCCAAGTCCATCTAAAATaGAGCATCAAGGAGACCATGCCATGGGACAAATGTGTGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: WSSSEMTSPIQVHLK*SIKETMPWDKCVSL Trigger: CAAGGACACACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTGGTCATTTCAGATGATGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS TCA 90 bp | CACAATCAAAGCAGCAGTCTGCTGTTTCTTTCTGATGAATTTTCCTaGATCCAGGAGTACATGTCACACTGCACATGGAGGAGGGTACTA | + |
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Preference number: 5 (lower is better) Translates to: HNQSSSLLFLSDEFS*IQEYMSHCTWRRVL Trigger: TAGTACCCTCCTCCATGTGCAGTGTGACATGTACTCCTGGATTCAGGAAAATTCATCAGAAAGAAACAGCAGACTGCTGCTTTGATTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 90 bp | GTTGGCATACTTATCATCTGGACACCTCACACACTGTTCCATATCTaGTGTTTCATTGGAAACCTCATTTTCTGGGCACTGAACACAATC | + |
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Preference number: 5 (lower is better) Translates to: VGILIIWTPHTLFHI*CFIGNLIFWALNTI Trigger: GATTGTGTTCAGTGCCCAGAAAATGAGGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAGTATGCCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 90 bp | CACACACTGTTCCATATCTGCTGTTTCATTGGAAACCTCATTTTCTaGGCACTGAACACAATCAAAGCAGCAGTCTGCTGTTTCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: HTLFHICCFIGNLIF*ALNTIKAAVCCFFL Trigger: CAGAAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCAGTGCCCAGAAAATGAGGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 90 bp | CAAATTGTAACCTTCATCACTCAGGGCCATGTCATAGTTGTGCAGTaGTGTCCATTCCAATGGGTTTTTGCATGTGAAATGATCCATTTT | + |
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Preference number: 5 (lower is better) Translates to: QIVTFITQGHVIVVQ*CPFQWVFACEMIHF Trigger: AAAATGGATCATTTCACATGCAAAAACCCATTGGAATGGACAGCACTGCACAACTATGACATGGCCCTGAGTGATGAAGGTTACAATTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 90 bp | ATCACTCAGGGCCATGTCATAGTTGTGCAGTGCTGTCCATTCCAATaGGTTTTTGCATGTGAAATGATCCATTTTAATGCTGTTCTTAGA | + |
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Preference number: 5 (lower is better) Translates to: ITQGHVIVVQCCPFQ*VFACEMIHFNAVLR Trigger: TCTAAGAACAGCATTAAAATGGATCATTTCACATGCAAAAACCCATTGGAATGGACAGCACTGCACAACTATGACATGGCCCTGAGTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | GGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCTTCATGGAAACCACACTCACTTaGCAACTCTCCATCATTATA | + |
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Preference number: 5 (lower is better) Translates to: GCSNSVKVHGKMLITGFMETTLT*QLSIII Trigger: TATAATGATGGAGAGTTGCAAAGTGAGTGTGGTTTC...CATGAAGCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | TGGCTTACAGACAAAACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGGTCCAAAGAAAACCTTaGGTGTCCAAGAATCAATTG | + |
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Preference number: 5 (lower is better) Translates to: WLTDKTTGENDGSHSSIEVQRKP*VSKNQL Trigger: CAATTGATTCTTGGACACCAAAGGTTTTCTTTGGAC...CTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGTTTTGTCTGTAAGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | GGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCTTCATGACACTGATATTCCCTTaGATTCATGTTCACCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: GCSNSVKVHGKMLITGFMTLIFP*IHVHQF Trigger: GAACTGGTGAACATGAATCAAAGGGAATATCAGTGT...CATGAAGCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 90 bp | TCCAAGGCCTTGTGGAAAATTCCAAATGATGAAAATGTCATACTCTaGACACTGATATTCCCTTTGATTCATGTTCACCAGTTCTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SKALWKIPNDENVIL*TLIFPLIHVHQFSN Trigger: GTTGGAGAACTGGTGAACATGAATCAAAGGGAATATCAGTGTGCAGAGTATGACATTTTCATCATTTGGAATTTTCCACAAGGCCTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | GAAAATGGATGCAGTAACTCAGTCAAAGTCCATGGAAAAATGCTGATTACTGGCAAGTCCCAAAGAATCTaGACATTTACCACCAATGAC | + |
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Preference number: 5 (lower is better) Translates to: ENGCSNSVKVHGKMLITGKSQRI*TFTTND Trigger: GTCATTGGTGGTAAATGTCAAGATTCTTTGGGACTT...GCCAGTAATCAGCATTTTTCCATGGACTTTGACTGAGTTACTGCATCCATTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | ACCACAGGTGAAAATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAAACAATGGGAGTATCCTaGTACTTCATAAAAGTGACT | + |
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Preference number: 5 (lower is better) Translates to: TTGENDGSHSSIEISGSQTMGVS*YFIKVT Trigger: AGTCACTTTTATGAAGTACAAGGATACTCCCATTGT...TTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATTTTCACCTGTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS-3UTR CAA 90 bp | AATGATGGTAGCCATTCCTCAATTGAGATTTCTGGTTCTCAACATATTCAGGTTGTCTTCTGCCATTTTTaGAGACTCTACTTGATGAAG | + |
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Preference number: 5 (lower is better) Translates to: NDGSHSSIEISGSQHIQVVFCHF*RLYLMK Trigger: CTTCATCAAGTAGAGTCTCAAAAAATGGCAGAAGAC...AACCTGAATATGTTGAGAACCAGAAATCTCAATTGAGGAATGGCTACCATCATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 72 bp | AGTCCAAATGTGGTCTGCTGCAGGATGCAGGTGACCTaGTTGGGATGTTCAATGAAGAGCAATGAGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SPNVVCCRMQVT*LGCSMKSNEQR Trigger: TCTCTGCTCATTGCTCTTCATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CAA 72 bp | CCAAATGTGGTCTGCTGCAGGATGCAGGTGACCTGGTaGGGATGTTCAATGAAGAGCAATGAGCAGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PNVVCCRMQVTW*GCSMKSNEQRK Trigger: CTTTCTCTGCTCATTGCTCTTCATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 72 bp | ACAGCCACAGTGAAAAATAGTCCAAATGTGGTCTGCTaGAGGATGCAGGTGACCTGGTTGGGATGTTCAATG | + |
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Preference number: 6 (lower is better) Translates to: TATVKNSPNVVC*RMQVTWLGCSM Trigger: CATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGGACTATTTTTCACTGTGGCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 72 bp | GAAACAGCCACAGTGAAAAATAGTCCAAATGTGGTCTaGTGCAGGATGCAGGTGACCTGGTTGGGATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ETATVKNSPNVV*CRMQVTWLGCS Trigger: TGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCACATTTGGACTATTTTTCACTGTGGCTGTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS GCA 72 bp | ACCTTCATCACTCAGGGCCATGTCATAGTTGTGCAGTaGTGTCCATTCCAATGGGTTTTTGCATGTGAAATG | + |
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Preference number: 6 (lower is better) Translates to: TFITQGHVIVVQ*CPFQWVFACEM Trigger: CATTTCACATGCAAAAACCCATTGGAATGGACAGCACTGCACAACTATGACATGGCCCTGAGTGATGAAGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 72 bp | ACACAGTTCTTTGGAGGCAGTGGGATTGCTCTAAGTTaGCATACTTATCATCTGGACACCTCACACACTGTT | + |
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Preference number: 6 (lower is better) Translates to: TQFFGGSGIALS*HTYHLDTSHTV Trigger: AACAGTGTGTGAGGTGTCCAGATGATAAGTATGCCAACTTAGAGCAATCCCACTGCCTCCAAAGAACTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CAA 72 bp | ATCATCCCTCTCATCCTTTTTCCTGGAGTAGTGAGCTaGAAAGCCATGACCACAGTTATTGTTTTGGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: IIPLILFPGVVS*KAMTTVIVLAN Trigger: GTTGGCCAAAACAATAACTGTGGTCATGGCTTTCAAGCTCACTACTCCAGGAAAAAGGATGAGAGGGATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS TCA 72 bp | TCTGAAATGACCAGTCCTATCCAAGTCCATCTAAAATaGAGCATCAAGGAGACCATGCCATGGGACAAATGT | + |
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Preference number: 6 (lower is better) Translates to: SEMTSPIQVHLK*SIKETMPWDKC Trigger: ACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTGGTCATTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CCA 72 bp | GGCCATGTCATAGTTGTGCAGTGCTGTCCATTCCAATaGGTTTTTGCATGTGAAATGATCCATTTTAATGCT | + |
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Preference number: 6 (lower is better) Translates to: GHVIVVQCCPFQ*VFACEMIHFNA Trigger: AGCATTAAAATGGATCATTTCACATGCAAAAACCCATTGGAATGGACAGCACTGCACAACTATGACATGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CAA 72 bp | GATGAAAATGTCATACTCTGCACACTGATATTCCCTTaGATTCATGTTCACCAGTTCTCCAACAGGATTAGT | + |
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Preference number: 6 (lower is better) Translates to: DENVILCTLIFP*IHVHQFSNRIS Trigger: ACTAATCCTGTTGGAGAACTGGTGAACATGAATCAAAGGGAATATCAGTGTGCAGAGTATGACATTTTCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS TCA 72 bp | CCAGAAGTCCCAAAGAATCTTGACATTTACCACCAATaGCAGAGAATACCAAAGATGTGTTTGGTAAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: PEVPKNLDIYHQ*QRIPKMCLVKD Trigger: ATCTTTTACCAAACACATCTTTGGTATTCTCTGTCATTGGTGGTAAATGTCAAGATTCTTTGGGACTTCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CAA 72 bp | AGAATGCAGTTATTGGCCTTCACAATGGGAGTATCCTaGTACTTCATAAAAGTGACTAGTACTAGAATTGTG | + |
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Preference number: 6 (lower is better) Translates to: RMQLLAFTMGVS*YFIKVTSTRIV Trigger: CACAATTCTAGTACTAGTCACTTTTATGAAGTACAAGGATACTCCCATTGTGAAGGCCAATAACTGCATTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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| CDS CAA 90 bp | TTCCATAGGTTTCTCCATTGTCCAAAGGAAGAAACCACACTCACTTaGCAACTCTCCATCATTATATTCACTATCTTTTATCCTCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: FHRFLHCPKEETTLT*QLSIIIFTIFYPPK Trigger: TTTTGGAGGATAAAAGATAGTGAATATAATGATGGAGAGTTGCAAAGTGAGTGTGGTTTCTTCCTTTGGACAATGGAGAAACCTATGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164227.4 |
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