RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R69 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091006

Ensembl transcript IDs: ENSMUST00000171213.3, ENSMUST00000207880.3, ENSMUST00000233336.2, ENSMUST00000233859.2

Found 510 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTaGAGGCAGGGAGACAAAGTCTCTTCAGTGCCTTCCAGGTCCCTC +
Preference number: 1 (lower is better)
Translates to: SLSRPGARVPAKGSK*RQGDKVSSVPSRSL
Trigger: GAGGGACCTGGAAGGCACTGAAGAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GCTGTTCTCCTGGAAGGGAGTCAATTTTGTCCCTGGTTGAAGGTGTaGAGACCTCCTGTGTCTCTGGTTCTTGATGACCTTCTGTGTACC +
Preference number: 1 (lower is better)
Translates to: AVLLEGSQFCPWLKV*RPPVSLVLDDLLCT
Trigger: GGTACACAGAAGGTCATCAAGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp GTGTTTGAGCTGTTCTCCTGGAAGGGAGTCAATTTTGTCCCTGGTTaGAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTTGATGACCTTC +
Preference number: 1 (lower is better)
Translates to: VFELFSWKGVNFVPG*RCGDLLCLWFLMTF
Trigger: GAAGGTCATCAAGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGCTCAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp CAGGAGTCCAGGAGACATGATCAAATTTCTTCTGTCCCACGTACGTaGAAATTACCATCCACAGGGTCCCACCAGGGTTCAAGACAGAAG +
Preference number: 1 (lower is better)
Translates to: QESRRHDQISSVPRT*KLPSTGSHQGSRQK
Trigger: CTTCTGTCTTGAACCCTGGTGGGACCCTGTGGATGGTAATTTCCACGTACGTGGGACAGAAGAAATTTGATCATGTCTCCTGGACTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp ACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCTTGGAATaGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATG +
Preference number: 1 (lower is better)
Translates to: THGGKNASTCICSLE*PCQTSRGGEALVPM
Trigger: CATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GACCTCCTGTGTCTCTGGTTCTTGATGACCTTCTGTGTACCTGTTTaGGGCAGACCTCATGTGTTCCTTTCCATGTTAACCTCTGGGAGA +
Preference number: 1 (lower is better)
Translates to: DLLCLWFLMTFCVPV*GRPHVFLSMLTSGR
Trigger: TCTCCCAGAGGTTAACATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAGAACCAGAGACACAGGAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp GGAAAACCTTATTTTCATGTGGGAAGGCTTGGTGCTGTTCCTACATaGCTGATAGCCACGTGCCTCTGTGGAGGTGGTAACTTCAACAGG +
Preference number: 1 (lower is better)
Translates to: GKPYFHVGRLGAVPT*LIATCLCGGGNFNR
Trigger: CCTGTTGAAGTTACCACCTCCACAGAGGCACGTGGCTATCAGTCATGTAGGAACAGCACCAAGCCTTCCCACATGAAAATAAGGTTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp AGAGCTGGCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTaGGCTGTTCTCCTGGAAGGGAGTCAATTTTGTCCCTGGTTGAAG +
Preference number: 1 (lower is better)
Translates to: RAGLFGGSLCSVSCV*AVLLEGSQFCPWLK
Trigger: CTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGCCAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp CAGCTGAATCATGGTGCATATGAGAATGATGTATTTGGGTGCCCCTaGCACAAGCAGCCACCTCATTCTTCTTCCTGGAACAGTTATCTT +
Preference number: 1 (lower is better)
Translates to: QLNHGAYENDVFGCP*HKQPPHSSSWNSYL
Trigger: AAGATAACTGTTCCAGGAAGAAGAATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATACATCATTCTCATATGCACCATGATTCAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR TCA 90 bp AGCAACAGAGCCCATGTATCCAAGGACACAGTAGAAGGCAATCACTaGACCTTTGTTGCAAACAATGATGATGTGTCCATGTACCATTTG +
Preference number: 1 (lower is better)
Translates to: SNRAHVSKDTVEGNH*TFVANNDDVSMYHL
Trigger: CAAATGGTACATGGACACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGTCCTTGGATACATGGGCTCTGTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CCA 90 bp GTAACAAGTGGAGGAAAATCTATGCATATCTTTGTGACCTGCCATTaGCTTTCTTTCACTTATTTTGCTGCATCATTGGGCCTCAGCGCT +
Preference number: 1 (lower is better)
Translates to: VTSGGKSMHIFVTCH*LSFTYFAASLGLSA
Trigger: AGCGCTGAGGCCCAATGATGCAGCAAAATAAGTGAAAGAAAGCCAATGGCAGGTCACAAAGATATGCATAGATTTTCCTCCACTTGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR TCA 90 bp AGAGAAAGGATTGAAGGAGCTGAAGGATTTTGTAGGCCCATAGAATaGACAATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAA +
Preference number: 1 (lower is better)
Translates to: RERIEGAEGFCRPIE*TICTNQKSQSPHGQ
Trigger: TTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATTGTTCATTCTATGGGCCTACAAAATCCTTCAGCTCCTTCAATCCTTTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp TGGTCATCACTTGTAACAATCACTCCTATCCAGTTCCATCTGAAATaGACAACTAAGGACACCATGGCTAGTGGTAGAGATGTGTCCTTT +
Preference number: 1 (lower is better)
Translates to: WSSLVTITPIQFHLK*TTKDTMASGRDVSF
Trigger: AAAGGACACATCTCTACCACTAGCCATGGTGTCCTTAGTTGTTCATTTCAGATGGAACTGGATAGGAGTGATTGTTACAAGTGATGACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 90 bp AGTGGCCATTGTGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTaGCAAAATTCCAACACAATTCTTCAAAGACATGGAAAGGGCAAT +
Preference number: 1 (lower is better)
Translates to: SGHCAKSNLQIQWSP*QNSNTILQRHGKGN
Trigger: ATTGCCCTTTCCATGTCTTTGAAGAATTGTGTTGGAATTTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCACAATGGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GAAACTGGATTTTCAGGTCTTTTAGGTGATCAAGAGATTGCTGGGTaGAAGAACTGGGTTCTGACAGTGCTAAATTACATTGGCTTCCAT +
Preference number: 1 (lower is better)
Translates to: ETGFSGLLGDQEIAG*KNWVLTVLNYIGFH
Trigger: ATGGAAGCCAATGTAATTTAGCACTGTCAGAACCCAGTTCTTCCACCCAGCAATCTCTTGATCACCTAAAAGACCTGAAAATCCAGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GAGTCACACCAACATACTTTATATTGTTGTGACTATTGTGAAAGGTaGTTTTTCCCTAATTCCCCTCTCAGCCTGTTTGTTCTCTCTCTC +
Preference number: 1 (lower is better)
Translates to: ESHQHTLYCCDYCER*FFPNSPLSLFVLSL
Trigger: GAGAGAGAGAACAAACAGGCTGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAGTATGTTGGTGTGACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp TTTTCAGGTCTTTTAGGTGATCAAGAGATTGCTGGGTGGAAGAACTaGGTTCTGACAGTGCTAAATTACATTGGCTTCCATCACTTATGT +
Preference number: 1 (lower is better)
Translates to: FSGLLGDQEIAGWKN*VLTVLNYIGFHHLC
Trigger: ACATAAGTGATGGAAGCCAATGTAATTTAGCACTGTCAGAACCCAGTTCTTCCACCCAGCAATCTCTTGATCACCTAAAAGACCTGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GGCTACCTACACATAAATTGCAAATGGATAGCTTGGTCTTCATCTTaGTCCTTTCAAAATTTGAGCAACATCTTTTGCCATCTTTGTGCC +
Preference number: 1 (lower is better)
Translates to: GYLHINCKWIAWSSS*SFQNLSNIFCHLCA
Trigger: GGCACAAAGATGGCAAAAGATGTTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp ATAAATAGAAAATGTACCGCTTGGTCTTCTGTGTCCTGTAACAAGTaGAGGAAAATCTATGCATATCTTTGTGACCTGCCATTGGCTTTC +
Preference number: 1 (lower is better)
Translates to: INRKCTAWSSVSCNK*RKIYAYLCDLPLAF
Trigger: GAAAGCCAATGGCAGGTCACAAAGATATGCATAGATTTTCCTCCACTTGTTACAGGACACAGAAGACCAAGCGGTACATTTTCTATTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR CCA 90 bp AGGCTGTCTGTAAAGCCTATCCACATAAATAGAAAATGTACCGCTTaGTCTTCTGTGTCCTGTAACAAGTGGAGGAAAATCTATGCATAT +
Preference number: 1 (lower is better)
Translates to: RLSVKPIHINRKCTA*SSVSCNKWRKIYAY
Trigger: ATATGCATAGATTTTCCTCCACTTGTTACAGGACACAGAAGACCAAGCGGTACATTTTCTATTTATGTGGATAGGCTTTACAGACAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR TCA 90 bp TTCTTCCCAAGTGTTACATACAGCTCTTGGAACAAAAGACTCAGATaGAGGAGTAGTTCTCATGTACCTTTAATTCCTGGATGGATGTAT +
Preference number: 1 (lower is better)
Translates to: FFPSVTYSSWNKRLR*RSSSHVPLIPGWMY
Trigger: ATACATCCATCCAGGAATTAAAGGTACATGAGAACTACTCCTTCATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACACTTGGGAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp AGGAGTAGAGGGCAGGAAATCAATTTAATAGCTGAAGTCAGCCAGTaGGAACCAAAGAGAACAGTACAAAGAATCAACAAAACTAAGAGT +
Preference number: 1 (lower is better)
Translates to: RSRGQEINLIAEVSQ*EPKRTVQRINKTKS
Trigger: ACTCTTAGTTTTGTTGATTCTTTGTACTGTTCTCTTTGGTTCTCACTGGCTGACTTCAGCTATTAAATTGATTTCCTGCCCTCTACTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp CTGAGTCCTGGTGTGCAAGGCATACTACATATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCACTCTATCATTTCTTTAGACATATAT +
Preference number: 1 (lower is better)
Translates to: LSPGVQGILHIEGRI*SISVAHSIISLDIY
Trigger: ATATATGTCTAAAGAAATGATAGAGTGGGCTACAGATATTGATCAGATTCTACCCTCAATATGTAGTATGCCTTGCACACCAGGACTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 90 bp GCCATGTTCTATCCTGTAGTAATTGCTTATTACCTGGATCAGAGTTaGACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTTCA +
Preference number: 1 (lower is better)
Translates to: AMFYPVVIAYYLDQS*TGISFFLNLLPLFS
Trigger: TGAAAAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGGTAATAAGCAATTACTACAGGATAGAACATGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 90 bp CAGTCTACAGCCAGTGTGATTGCTTCATGTCCTTCAGTCAAAGTCTaGAAATGCATTATTTTTATCCAAGTGGTTTTACCATCTAGTCTT +
Preference number: 1 (lower is better)
Translates to: QSTASVIASCPSVKV*KCIIFIQVVLPSSL
Trigger: AAGACTAGATGGTAAAACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCAATCACACTGGCTGTAGACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp TTTGGTCAAGATGGCCATTTTTACTGTATTAATGCTGTCAATCTATaGGCCTGGGAGAACTTTCCATCCTCTGAGATCATTTTCAAGTTT +
Preference number: 1 (lower is better)
Translates to: FGQDGHFYCINAVNL*AWENFPSSEIIFKF
Trigger: AAACTTGAAAATGATCTCAGAGGATGGAAAGTTCTCCCAGGCTCATAGATTGACAGCATTAATACAGTAAAAATGGCCATCTTGACCAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp TTCTTCATTAAGAGGAACCATTTTAATTTATTGGTGTTCTGTTCATaGAAATTTCCCCAGTGCCCATGTGCTCAAGGATCTTCACAACTT +
Preference number: 1 (lower is better)
Translates to: FFIKRNHFNLLVFCS*KFPQCPCAQGSSQL
Trigger: AAGTTGTGAAGATCCTTGAGCACATGGGCACTGGGGAAATTTTCATGAACAGAACACCAATAAATTAAAATGGTTCCTCTTAATGAAGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 90 bp AACACTTTCATAACTGCTAAGGAGTCAATAGTAGTAATTAAAAATTaGCTAAGCAAATACTGCCCAGGGCCAGATGATTTTAGTGCAGAA +
Preference number: 1 (lower is better)
Translates to: NTFITAKESIVVIKN*LSKYCPGPDDFSAE
Trigger: TTCTGCACTAAAATCATCTGGCCCTGGGCAGTATTTGCTTAGGCAATTTTTAATTACTACTATTGACTCCTTAGCAGTTATGAAAGTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 90 bp GTTCTATCCTGTAGTAATTGCTTATTACCTGGATCAGAGTTGCACTaGAATATCATTTTTCCTGAACCTATTGCCACTCTTTTCAATACA +
Preference number: 1 (lower is better)
Translates to: VLSCSNCLLPGSELH*NIIFPEPIATLFNT
Trigger: TGTATTGAAAAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGGTAATAAGCAATTACTACAGGATAGAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp AATACCAGAAAGTACAATAATCATTTTATGAGGCCACAATTACTTTaGCACCTAAACCCCACAAACACCCAAGAAAGAAACAGAACTTCA +
Preference number: 1 (lower is better)
Translates to: NTRKYNNHFMRPQLL*HLNPTNTQERNRTS
Trigger: TGAAGTTCTGTTTCTTTCTTGGGTGTTTGTGGGGTTTAGGTGTCAAAGTAATTGTGGCCTCATAAAATGATTATTGTACTTTCTGGTATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 90 bp CTTAGAAAAGCCACTGTAATTCCATACTGGTCTCATGGTCCCTTGTaGATTATCCATTTATTTAACACTATTGTGAACACAGTTTCATAC +
Preference number: 1 (lower is better)
Translates to: LRKATVIPYWSHGPL*IIHLFNTIVNTVSY
Trigger: GTATGAAACTGTGTTCACAATAGTGTTAAATAAATGGATAATTCACAAGGGACCATGAGACCAGTATGGAATTACAGTGGCTTTTCTAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGTGCATAAGCATCTCATaGAGTGAGTGGGCCACAGCA +
Preference number: 2 (lower is better)
Translates to: LCPGLVRGFQQREASAGRCISIS*SEWATA
Trigger: TGCTGTGGCCCACTCACTTCATGAGATGCTTATGCA...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAGAGGAAGCCCCACATaGGGCACCAGATGTGGGCCT +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPRGSPT*GTRCGP
Trigger: AGGCCCACATCTGGTGCCCCATGTGGGGCTTCCTCT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTAGAGGAAGCCCCACATaGGGCACCAGATGTGGGCCT +
Preference number: 2 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGRGSPT*GTRCGP
Trigger: AGGCCCACATCTGGTGCCCCATGTGGGGCTTCCTCT...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGGATGGTCTACAGAGTGATTATGGGGCACCAGATGTaGGCCTGGGTACCAGAGGTT +
Preference number: 2 (lower is better)
Translates to: GRGRQISEFEARMVYRVIMGHQM*AWVPEV
Trigger: AACCTCTGGTACCCAGGCCCACATCTGGTGCCCCAT...AATCACTCTGTAGACCATCCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTGGATGGTCTACAGAGTaGTTTCCAGGACAACCAGGG +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPGWSTE*FPGQPG
Trigger: CCCTGGTTGTCCTGGAAATCACTCTGTAGACCATCC...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGTGCTGGACTACTTGTTaGTCTGTATTTAGCAGTATG +
Preference number: 2 (lower is better)
Translates to: LCPGLVRGFQQREASAGRCWTTC*SVFSSM
Trigger: CATACTGCTAAATACAGACCAACAAGTAGTCCAGCA...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGAGAGGAAGCCCCACATaGGGCACCAGATGTGGGCCT +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWRGSPT*GTRCGP
Trigger: AGGCCCACATCTGGTGCCCCATGTGGGGCTTCCTCT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGTATTTGGGTGCCCCTaGCACAAGCAGCCACCTCAT +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHVFGCP*HKQPPH
Trigger: ATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATAC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTTATAGCCTGCACTCATaGAACAGAGTGGCTTCTCTC +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPYSLHS*NRVASL
Trigger: GAGAGAAGCCACTCTGTTCCATGAGTGCAGGCTATA...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGTCGCCCGAGCTGTCCTaGAACTCACTCTGTAGACCA +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWSPELS*NSLCRP
Trigger: TGGTCTACAGAGTGAGTTCCAGGACAGCTCGGGCGA...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAGCACCTAATGGATACTaGGGGAAGGTGAGCCCGCAC +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLAPNGY*GKVSPH
Trigger: GTGCGGGCTCACCTTCCCTCAGTATCCATTAGGTGC...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAGAGATCTTGGTGCATaGAAGGGCTTAGAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPRDLGA*KGLEKP
Trigger: TGGCTTTTCTAAGCCCTTTCATGCACCAAGATCTCT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCCTGAGGGGATTTTCTaGGTCCTGGTGTGCAAGGCA +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKPEGIF*VLVCKA
Trigger: TGCCTTGCACACCAGGACTCAGAAAATCCCCTCAGG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCTTTCTCTGCCTCATATaGCAAGATATTTTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLFLCLI*QDIFQA
Trigger: GGCTTGGAAAATATCTTGGCATATGAGGCAGAGAAA...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGGCCAGGCAGTGGTGGTaGATGCCTTTAATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKARQWW*MPLIPA
Trigger: TGCTGGGATTAAAGGCATGCACCACCACTGCCTGGC...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCTGTGGGAAGGCTTGGTaGTGTTCCTACATGACTGAT +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSCGKAW*CSYMTD
Trigger: ATCAGTCATGTAGGAACAGCACCAAGCCTTCCCACA...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTGGGCAGGGAAGTAATTaGTTAAGTCCTGAGGAGAAT +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPGQGSN*LSPEEN
Trigger: ATTCTCCTCAGGACTTAAGCAATTACTTCCCTGCCC...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCTCTCACATGTGTTACTaGAGACCTCCTGAGAGACAG +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSSHMCY*RPPERQ
Trigger: CTGTCTCTCAGGAGGTCTGCAGTAACACATGTGAGA...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCTGCTGGACTACTTGTTaGTCTGTATTTAGCAGTATG +
Preference number: 2 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLCWTTC*SVFSSM
Trigger: CATACTGCTAAATACAGACCAACAAGTAGTCCAGCA...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTAATGGGGCACCAGATGTaGGCCTGGGTACCAGAGGTT +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLMGHQM*AWVPEV
Trigger: AACCTCTGGTACCCAGGCCCACATCTGGTGCCCCAT...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTTCGCCCGAGCTGTCCTaGAACTCACTCTGTAGACCA +
Preference number: 2 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSSPELS*NSLCRP
Trigger: TGGTCTACAGAGTGAGTTCCAGGACAGCTCGGGCGA...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 90 bp CTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGAAGGGAGTCAATTTaGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCT +
Preference number: 2 (lower is better)
Translates to: LSFMCLSCSPGRESI*SLVEGVETSCVSGS
Trigger: AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGCTCAAACACATGAAACTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTGCTGAAGTCAGCCAGTaGGAACCAAAGAGAACAGTA +
Preference number: 2 (lower is better)
Translates to: ESILSLVEGVETSCVSGSAEVSQ*EPKRTV
Trigger: TACTGTTCTCTTTGGTTCTCACTGGCTGACTTCAGC...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGGTGTTTGGCAGAGACTaGAGGAAAGGCAATCCAGGG +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKVFGRD*RKGNPG
Trigger: CCCTGGATTGCCTTTCCTTCAGTCTCTGCCAAACAC...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAGCCAGGCAGTGGTGGTaGATGCCTTTAATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLARQWW*MPLIPA
Trigger: TGCTGGGATTAAAGGCATGCACCACCACTGCCTGGC...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCCCCAGATTCTTAAAATaGCTTGAGATATCCACAATG +
Preference number: 2 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLPRFLK*LEISTM
Trigger: CATTGTGGATATCTCAAGGCATTTTAAGAATCTGGG...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTGGTAGCCACAGTGAATaGAATGGCAAATGTGGTCTG +
Preference number: 2 (lower is better)
Translates to: ESILSLVEGVETSCVSGSGSHSE*NGKCGL
Trigger: CAGACCACATTTGCCATTGCATTCACTGTGGCTACC...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCACCAAAGAGTACACATaGAGGGAAAAATGCCTCCAC +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSTKEYT*REKCLH
Trigger: GTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGT...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCATGTCCACCATAGTTTaGCAAAGGAAAATTCACTAC +
Preference number: 2 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLMSTIV*QRKIHY
Trigger: GTAGTGAATTTTCCTTTGCCAAACTATGGTGGACAT...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR CAA 90 bp AAGACAGAAGCTCAACTGGAGACCAGGCTGTCTGTGTGTAGCCCCTaGCCCCACAAATATGGATACTTGAACTTTGACAAAGAGGCCAAA +
Preference number: 2 (lower is better)
Translates to: KTEAQLETRLSVCSP*PHKYGYLNFDKEAK
Trigger: TTTGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTGGGGCAAGGGGCTACACACAGACAGCCTGGTCTCCAGTTGAGCTTCTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTACCTCTCATTGGCTTaGGCTGAGAGTTTGGGGAAA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHYLSLA*AESLGK
Trigger: TTTCCCCAAACTCTCAGCTCAAGCCAATGAGAGGTA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGGTAGACCCACAATCTaGGTATGGAGAAGCAGAACA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHGRPTI*VWRSRT
Trigger: TGTTCTGCTTCTCCATACTCAGATTGTGGGTCTACC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAGTGATGCTAGACAGTaGAAAGATTTAGGGCCATTT +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPSDARQ*KDLGPF
Trigger: AAATGGCCCTAAATCTTTGCACTGTCTAGCATCACT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTGCCAGGCAGTGGTGGTaGATGCCTTTAATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLARQWW*MPLIPA
Trigger: TGCTGGGATTAAAGGCATGCACCACCACTGCCTGGC...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTGCCAGGCAGTGGTGGTaGATGCCTTTAATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSARQWW*MPLIPA
Trigger: TGCTGGGATTAAAGGCATGCACCACCACTGCCTGGC...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGACAAAGTCTCTTCAGTaGCTTCCAGGTCCCTCAGTA +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWTKSLQ*LPGPSV
Trigger: TACTGAGGGACCTGGAAGGCACTGAAGAGACTTTGT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTTGCTGGACTACTTGTTaGTCTGTATTTAGCAGTATG +
Preference number: 2 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGCWTTC*SVFSSM
Trigger: CATACTGCTAAATACAGACCAACAAGTAGTCCAGCA...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCAACCTTATTTTCATGTaGGAAGGCTTGGTGCTGTTC +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSNLIFM*EGLVLF
Trigger: GAACAGCACCAAGCCTTCCCACATGAAAATAAGGTT...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGGATGGTCTACAGAGTGATTAACCTTATTTTCATGTaGGAAGGCTTGGTGCTGTTC +
Preference number: 2 (lower is better)
Translates to: GRGRQISEFEARMVYRVINLIFM*EGLVLF
Trigger: GAACAGCACCAAGCCTTCCCACATGAAAATAAGGTT...AATCACTCTGTAGACCATCCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCGACCTAAAGATTTCCTaGGTTATGCCAGTGTTTTCA +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSDLKIS*VMPVFS
Trigger: TGAAAACACTGGCATAACTCAGGAAATCTTTAGGTC...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTCTCATTGGCTTGAGCTaGGAGTTTGGGGAAAACCTT +
Preference number: 2 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSLIGLS*EFGENL
Trigger: AAGGTTTTCCCCAAACTCTCAGCTCAAGCCAATGAG...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAACAAAAGACTCAGATaGAGGAGTAGTTCTCATGTA +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPNKRLR*RSSSHV
Trigger: TACATGAGAACTACTCCTTCATCTGAGTCTTTTGTT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTGGGTACCAGAGGTTTaGCAAAAAGATCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHWVPEV*QKDLCP
Trigger: TGGACAGAGATCTTTTTGTCAAACCTCTGGTACCCA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAGCACCCTCAGTCAGATaGATCCAAAGATCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLAPSVR*IQRSRS
Trigger: GGACCTTGATCTTTGGATTCATCTGACTGAGGGTGC...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCGCTACTGGATTGGTATaGTTACATAGTAAAAGTGGC +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSATGLV*LHSKSG
Trigger: GCCACTTTTACTATGTAATCATACCAATCCAGTAGC...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAAAATCAATTTAATAGCTaGAGTCAGCCAGTGAGAACC +
Preference number: 2 (lower is better)
Translates to: LGMALSDIKGRRGACSYENQFNS*SQPVRT
Trigger: GGTTCTCACTGGCTGACTTCAGCTATTAAATTGATT...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATAGAGATCTTGGTGCATaGAAGGGCTTAGAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHRDLGA*KGLEKP
Trigger: TGGCTTTTCTAAGCCCTTTCATGCACCAAGATCTCT...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCACCAGCAGCATTTGTTaGAAATGCTGCCATTTTTCA +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSTSSIC*KCCHFS
Trigger: TGAAAAATGGCAGCATTTTCAACAAATGCTGCTGGT...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAGAAACTTCTGTAGCTaGGAAATAACCTCAACAAAG +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPRNFCS*EITSTK
Trigger: CTTTGTTGAGGTTATTTCCCAGCTACAGAAGTTTCT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCCCTGAAGAATTGAGTTaGAATTTTGATGGGGATTGC +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSPEELS*NFDGDC
Trigger: GCAATCCCCATCAAAATTCCAACTCAATTCTTCAGG...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCGCTGCCATTTTTCACTaGATGATTTTAGTACCCTTG +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSAAIFH*MILVPL
Trigger: CAAGGGTACTAAAATCATCCAGTGAAAAATGGCAGC...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTACTCATTGGCTTGAGCTaGGAGTTTGGGGAAAACCTT +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLLIGLS*EFGENL
Trigger: AAGGTTTTCCCCAAACTCTCAGCTCAAGCCAATGAG...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAAGTGGCCATTGTGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAATACCTCTCATTGGCTTaGGCTGAGAGTTTGGGGAAA +
Preference number: 2 (lower is better)
Translates to: KVAIVPKAIYRFNGVPAKYLSLA*AESLGK
Trigger: TTTCCCCAAACTCTCAGCTCAAGCCAATGAGAGGTA...TTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCACAATGGCCACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTACCTCTCCCACTCAAATaGAGTATCTCTCTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLPLPLK*SISLSL
Trigger: GAGAGAGAGAGAGATACTTCATTTGAGTGGGAGAGG...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGGATACTGAGGGAAGGTaGGCCCGCACACCTCTTAAA +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQDTEGR*ARTPLK
Trigger: TTTAAGAGGTGTGCGGGCTCACCTTCCCTCAGTATC...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GATCAAGGTCCTAAAAAGTATTCCATTTCAGATCTCACAGTCCTTACCCAATTAGCACCTAATGGATACTaGGGGAAGGTGAGCCCGCAC +
Preference number: 2 (lower is better)
Translates to: DQGPKKYSISDLTVLTQLAPNGY*GKVSPH
Trigger: GTGCGGGCTCACCTTCCCTCAGTATCCATTAGGTGC...TAATTGGGTAAGGACTGTGAGATCTGAAATGGAATACTTTTTAGGACCTTGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCGGTCAGGCAAAATATTaGAACACTTTCATAACTGCT +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSGQAKY*NTFITA
Trigger: AGCAGTTATGAAAGTGTTTCAATATTTTGCCTGACC...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTAGAGATCTTGGTGCATaGAAGGGCTTAGAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSRDLGA*KGLEKP
Trigger: TGGCTTTTCTAAGCCCTTTCATGCACCAAGATCTCT...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCATTTTCCTTGATATCTaGGCCTGTTATGTAGGTACT +
Preference number: 2 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSIFLDI*ACYVGT
Trigger: AGTACCTACATAACAGGCTCAGATATCAAGGAAAAT...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTAACAAAGTCTCTTCAGTaGCTTCCAGGTCCCTCAGTA +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLTKSLQ*LPGPSV
Trigger: TACTGAGGGACCTGGAAGGCACTGAAGAGACTTTGT...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAAACAAAGTCTCTTCAGTaGCTTCCAGGTCCCTCAGTA +
Preference number: 2 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKTKSLQ*LPGPSV
Trigger: TACTGAGGGACCTGGAAGGCACTGAAGAGACTTTGT...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGGATGGTCTACAGAGTGATTCTTGAGCTGAGAGTTTaGGGAAAACCTTATTTTCAT +
Preference number: 2 (lower is better)
Translates to: GRGRQISEFEARMVYRVILELRV*GKPYFH
Trigger: ATGAAAATAAGGTTTTCCCCAAACTCTCAGCTCAAG...AATCACTCTGTAGACCATCCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGATGGGGCACCAGATGTaGGCCTGGGTACCAGAGGTT +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKMGHQM*AWVPEV
Trigger: AACCTCTGGTACCCAGGCCCACATCTGGTGCCCCAT...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGCCCACATCTGGCTCATaGACATGGGGCTTGAACAGT +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQPTSGS*TWGLNS
Trigger: ACTGTTCAAGCCCCATGTCCATGAGCCAGATGTGGG...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTACCCAGGCCCACATCTaGCTCATGGACATGGGGCTT +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGTQAHI*LMDMGL
Trigger: AAGCCCCATGTCCATGAGCCAGATGTGGGCCTGGGT...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAATTCTTCAAAGACATaGAAAGGGCAATTCTCAACT +
Preference number: 2 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPNSSKT*KGQFST
Trigger: AGTTGAGAATTGCCCTTTCCATGTCTTTGAAGAATT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTGGTGACAGCAGAAGTTaGAGAAGATGTGGAGAAACA +
Preference number: 2 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSGDSRS*RRCGET
Trigger: TGTTTCTCCACATCTTCTCCAACTTCTGCTGTCACC...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGAGAAGGCTGTATTTATaGTTTCTGAAGACCTCCTGG +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWRRLYL*FLKTSW
Trigger: CCAGGAGGTCTTCAGAAACCATAAATACAGCCTTCT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGTTTGAGCTGTTCTCCTaGAAGGGAGTCAATTTTGTC +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWFELFS*KGVNFV
Trigger: GACAAAATTGACTCCCTTCCAGGAGAACAGCTCAAA...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAGGATGGTCTACAGAGTaGTTTCCAGGACAACCAGGG +
Preference number: 2 (lower is better)
Translates to: ERSIAQALLLFSIIINSQGWSTE*FPGQPG
Trigger: CCCTGGTTGTCCTGGAAATCACTCTGTAGACCATCC...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTCTCATTGGCTTGAGCTaGGAGTTTGGGGAAAACCTT +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLLIGLS*EFGENL
Trigger: AAGGTTTTCCCCAAACTCTCAGCTCAAGCCAATGAG...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTGCTGAAGTCAGCCAGTaGGAACCAAAGAGAACAGTA +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLAEVSQ*EPKRTV
Trigger: TACTGTTCTCTTTGGTTCTCACTGGCTGACTTCAGC...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGTTCATGTCCCTTCCTTaGCAATGTAAATGTACGCCA +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKFMSLP*QCKCTP
Trigger: TGGCGTACATTTACATTGTCAAGGAAGGGACATGAA...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCTCTGTAGACCAGGCTaGTTTCAAACTCAGAAATTC +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKLCRPG*FQTQKF
Trigger: GAATTTCTGAGTTTGAAATCAGCCTGGTCTACAGAG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGTTGCCCAGGTTCCTCTaGCTAGAGCTGGCCTCTTTG +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLPRFL*LELASL
Trigger: CAAAGAGGCCAGCTCTAGTCAGAGGAACCTGGGCAA...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GATCAAGGTCCTAAAAAGTATTCCATTTCAGATCTCACAGTCCTTACCCAATTAGTATTTGGGTGCCCCTaGCACAAGCAGCCACCTCAT +
Preference number: 2 (lower is better)
Translates to: DQGPKKYSISDLTVLTQLVFGCP*HKQPPH
Trigger: ATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATAC...TAATTGGGTAAGGACTGTGAGATCTGAAATGGAATACTTTTTAGGACCTTGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGTTTCTCTGCCTCATATaGCAAGATATTTTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWFLCLI*QDIFQA
Trigger: GGCTTGGAAAATATCTTGGCATATGAGGCAGAGAAA...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTATTTCCAATAAATGGTaGTGGACTACTTGTTGGTCT +
Preference number: 2 (lower is better)
Translates to: ESILSLVEGVETSCVSGSISNKW*WTTCWS
Trigger: AGACCAACAAGTAGTCCAGCACCATTTATTGGAAAT...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTGTGGGAAGGCTTGGTaGTGTTCCTACATGACTGAT +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLCGKAW*CSYMTD
Trigger: ATCAGTCATGTAGGAACAGCACCAAGCCTTCCCACA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAACTTCAGATAGTGCCATaGATAGCCAATGATAATATT +
Preference number: 2 (lower is better)
Translates to: LGMALSDIKGRRGACSYELQIVP*IANDNI
Trigger: AATATTATCATTGGCTATGCATGGCACTATCTGAAG...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGTACAGCCAGTGTGATTaGTTCATGTCCTTCAGTCAA +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKYSQCD*FMSFSQ
Trigger: TTGACTGAAGGACATGAAGCAATCACACTGGCTGTA...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGCTATTGTGCAGTGCATaGCAACAAGTGATTGATGAT +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWLLCSA*QQVIDD
Trigger: ATCATCAATCACTTGTTGGCATGCACTGCACAATAG...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCGGTAGCCACAGTGAATaGAATGGCAAATGTGGTCTG +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPGSHSE*NGKCGL
Trigger: CAGACCACATTTGCCATTGCATTCACTGTGGCTACC...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTTCTTTCACTTATTTTaGTGCATCATTGGGCCTCAG +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHFFHLF*CIIGPQ
Trigger: CTGAGGCCCAATGATGCAGCAAAATAAGTGAAAGAA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCTGCTGGACTACTTGTTaGTCTGTATTTAGCAGTATG +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSCWTTC*SVFSSM
Trigger: CATACTGCTAAATACAGACCAACAAGTAGTCCAGCA...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTACCCAGGCCCACATCTaGCTCATGGACATGGGGCTT +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIITQAHI*LMDMGL
Trigger: AAGCCCCATGTCCATGAGCCAGATGTGGGCCTGGGT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGCATCCCCAAATATGTaGGACACAATGAAAACCAAA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHASPNM*DTMKTK
Trigger: TTTGGTTTTCATTGTGTCCCACATATTTGGGGATGC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCGCATCCCCAAATATGTaGGACACAATGAAAACCAAA +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSASPNM*DTMKTK
Trigger: TTTGGTTTTCATTGTGTCCCACATATTTGGGGATGC...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTTCAATACAGGGTGGATaGCAAAATATTTCCACTAGT +
Preference number: 2 (lower is better)
Translates to: ESILSLVEGVETSCVSGSSIQGG*QNISTS
Trigger: ACTAGTGGAAATATTTTGCCATCCACCCTGTATTGA...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGACTATTGTGAAAGGTaGTTTTTCCCTAATTCCCCT +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHDYCER*FFPNSP
Trigger: AGGGGAATTAGGGAAAAACCACCTTTCACAATAGTC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAAGTGGCCATTGTGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAAGCATGTATCACTCATaGCCATTCCAAATGGTGTCC +
Preference number: 2 (lower is better)
Translates to: KVAIVPKAIYRFNGVPAKSMYHS*PFQMVS
Trigger: GGACACCATTTGGAATGGCCATGAGTGATACATGCT...TTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCACAATGGCCACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCCCTCATTCTTCTTCCTaGAACAGTTATCTTGAATGC +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSPHSSS*NSYLEC
Trigger: GCATTCAAGATAACTGTTCCAGGAAGAAGAATGAGG...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAATTCAGTTTTAGCATGTaGTTTCCTGAACTTGTGAAA +
Preference number: 2 (lower is better)
Translates to: LGMALSDIKGRRGACSYEFSFSM*FPELVK
Trigger: TTTCACAAGTTCAGGAAACCACATGCTAAAACTGAA...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTTGGATACTTGAACTTTaGCAAAGAGGCCAAAAACAC +
Preference number: 2 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSWILEL*QRGQKH
Trigger: GTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCA...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GATCAAGGTCCTAAAAAGTATTCCATTTCAGATCTCACAGTCCTTACCCAATTAGATACTGAGGGAAGGTaGGCCCGCACACCTCTTAAA +
Preference number: 2 (lower is better)
Translates to: DQGPKKYSISDLTVLTQLDTEGR*ARTPLK
Trigger: TTTAAGAGGTGTGCGGGCTCACCTTCCCTCAGTATC...TAATTGGGTAAGGACTGTGAGATCTGAAATGGAATACTTTTTAGGACCTTGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGATGGTATTGGTACAGTaGCAAACAGTTCAATCAGTT +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWMVLVQ*QTVQSV
Trigger: AACTGATTGAACTGTTTGTCACTGTACCAATACCAT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATACTTCACAGCTCTTCTaGAAGTTCAAGAACTATAAG +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHTSQLF*KFKNYK
Trigger: CTTATAGTTCTTGAACTTTCAGAAGAGCTGTGAAGT...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATAACACAGTTTCATACTaGGCAGTAAATTGTGCTTCA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHNTVSY*AVNCAS
Trigger: TGAAGCACAATTTACTGCTCAGTATGAAACTGTGTT...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTTCAGGAAGCCTCAGTaGATCACCTACTACCTATTG +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLFRKPQ*ITYYLL
Trigger: CAATAGGTAGTAGGTGATTCACTGAGGCTTCCTGAA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGGAATACCAAGTGGATaGGAAGTACCTAAAGAAATA +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHGIPSG*EVPKEI
Trigger: TATTTCTTTAGGTACTTCTCATCCACTTGGTATTCC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAAGTGGCCATTGTGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAAGATCGGAGTGTGCTTaGGCAAACTGTATTCATGTT +
Preference number: 2 (lower is better)
Translates to: KVAIVPKAIYRFNGVPAKRSECA*ANCIHV
Trigger: AACATGAATACAGTTTGCTCAAGCACACTCCGATCT...TTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCACAATGGCCACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTACTTCCCAGCATTATTTaGCCATGTGTCTACTTCTTG +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLLPSII*PCVYFL
Trigger: CAAGAAGTAGACACATGGTCAAATAATGCTGGGAAG...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGATTTCCAATAAATGGTaGTGGACTACTTGTTGGTCT +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWISNKW*WTTCWS
Trigger: AGACCAACAAGTAGTCCAGCACCATTTATTGGAAAT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCATCTAAAACAAGACAGACTAATAGCAACACAGCTGCTAAGCACCCTCAGTCAACCCCTGCCTCCTTATaGCTCAGAGGAAAAATTAAT +
Preference number: 2 (lower is better)
Translates to: PSKTRQTNSNTAAKHPQSTPASL*LRGKIN
Trigger: ATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGGT...TGACTGAGGGTGCTTAGCAGCTGTGTTGCTATTAGTCTGTCTTGTTTTAGATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGATAATATTTATAGCCTaGACTCATGGAACAGAGTGG +
Preference number: 2 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWIIFIA*THGTEW
Trigger: CCACTCTGTTCCATGAGTGCAGGCTATAAATATTAT...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCATTCAATGGAGTCCCTaGCAAAATTCCAACACAATT +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSIQWSP*QNSNTI
Trigger: AATTGTGTTGGAATTTTGGCAGGGACTCCATTGAAT...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCTATTGTGCAGTGCATaGCAACAAGTGATTGATGAT +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKLLCSA*QQVIDD
Trigger: ATCATCAATCACTTGTTGGCATGCACTGCACAATAG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp ACCCTCAGTCAGATGAATCCAAAGATCAAGGTCCTAAAAAGTATTCCATTTCAGAGACAGAAGCTCAACTaGAGACCAGGCTGTCTGTGT +
Preference number: 2 (lower is better)
Translates to: TLSQMNPKIKVLKSIPFQRQKLN*RPGCLC
Trigger: ACACAGACAGCCTGGTCTCCAGTTGAGCTTCTGTCT...CTGAAATGGAATACTTTTTAGGACCTTGATCTTTGGATTCATCTGACTGAGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGAATCTACAGATTCAATaGAGTCCCTGCCAAAATTCC +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKNLQIQ*SPCQNS
Trigger: GGAATTTTGGCAGGGACTCCATTGAATCTGTAGATT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCGAAGACCTCAGAAAATaGAAAGATCTACTATGCTAC +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSEDLRK*KDLLCY
Trigger: GTAGCATAGTAGATCTTTCCATTTTCTGAGGTCTTC...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCCTTCTGTTAAGTGTTTaGAGTGATCAGGAATTCAAG +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSLLLSV*SDQEFK
Trigger: CTTGAATTCCTGATCACTCCAAACACTTAACAGAAG...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATCTTTTCAATACAGGGTaGATGGCAAAATATTTCCAC +
Preference number: 2 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHLFNTG*MAKYFH
Trigger: GTGGAAATATTTTGCCATCCACCCTGTATTGAAAAG...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAATATGTAGCTTGGAATaGCCTTGTCAGACATCAAGG +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLICSLE*PCQTSR
Trigger: CCTTGATGTCTGACAAGGCCATTCCAAGCTACATAT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGGACTATTGTGAAAGGTaGTTTTTCCCTAATTCCCCT +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKDYCER*FFPNSP
Trigger: AGGGGAATTAGGGAAAAACCACCTTTCACAATAGTC...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCCTGAAGAATTGAGTTaGAATTTTGATGGGGATTGC +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKPEELS*NFDGDC
Trigger: GCAATCCCCATCAAAATTCCAACTCAATTCTTCAGG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATGGATTTTCTGAGTCCTaGTGTGCAAGGCATACTACA +
Preference number: 2 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHGFSES*CARHTT
Trigger: TGTAGTATGCCTTGCACACCAGGACTCAGAAAATCC...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CCA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATGCAGAAGTGGAGGGATaGGGGAATGTGAGTAGACGG +
Preference number: 2 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDAEVEG*GNVSRR
Trigger: CCGTCTACTCACATTCCCCCATCCCTCCACTTCTGC...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR CAA 90 bp ACAAAGATCACATGGTATTGGTACAGTGACAAACAGTTCAATCAGTaGAATAGAATGGATGACCCAGAAGTAAACCTACCCAGGCCCACA +
Preference number: 2 (lower is better)
Translates to: TKITWYWYSDKQFNQ*NRMDDPEVNLPRPT
Trigger: TGTGGGCCTGGGTAGGTTTACTTCTGGGTCATCCATTCTATTCAACTGATTGAACTGTTTGTCACTGTACCAATACCATGTGATCTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAAGACCTAAAGATTTCCTaGGTTATGCCAGTGTTTTCA +
Preference number: 2 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKDLKIS*VMPVFS
Trigger: TGAAAACACTGGCATAACTCAGGAAATCTTTAGGTC...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCATCTAAAACAAGACAGACTAATAGCAACACAGCTGCTAAGCACCCTCAGTCATGGATACTTGAACTTTaGCAAAGAGGCCAAAAACAC +
Preference number: 2 (lower is better)
Translates to: PSKTRQTNSNTAAKHPQSWILEL*QRGQKH
Trigger: GTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCA...TGACTGAGGGTGCTTAGCAGCTGTGTTGCTATTAGTCTGTCTTGTTTTAGATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAATGGATACTTGAACTTTaGCAAAGAGGCCAAAAACAC +
Preference number: 2 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKWILEL*QRGQKH
Trigger: GTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCA...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGTGGGTACCAGAGGTTTaGCAAAAAGATCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQWVPEV*QKDLCP
Trigger: TGGACAGAGATCTTTTTGTCAAACCTCTGGTACCCA...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGAGCACCCTCAGTCAGATaGATCCAAAGATCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: FSSILATIRQCIGPSKTRAPSVR*IQRSRS
Trigger: GGACCTTGATCTTTGGATTCATCTGACTGAGGGTGC...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGTCACCTACTACCTATTaGGCAACAATTATCAACATG +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKSPTTY*ATIINM
Trigger: CATGTTGATAATTGTTGCTCAATAGGTAGTAGGTGA...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCTTTACAACCAACCATTaGACTGAACATTGTGTCCCC +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPFTTNH*TEHCVP
Trigger: GGGGACACAATGTTCAGTTCAATGGTTGGTTGTAAA...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGTGTTTGGCAGAGACTaGAGGAAAGGCAATCCAGGG +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIVFGRD*RKGNPG
Trigger: CCCTGGATTGCCTTTCCTTCAGTCTCTGCCAAACAC...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGAGTGGAATTGCATGCTaGTCCAAACATTTTGGAAAT +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKSGIAC*SKHFGN
Trigger: ATTTCCAAAATGTTTGGATCAGCATGCAATTCCACT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGATTCTTAAAATGCCTTaGGATATCCACAATGTGAGG +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKILKMP*DIHNVR
Trigger: CCTCACATTGTGGATATCTCAAGGCATTTTAAGAAT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGATTCAATGGAGTCCCTaGCAAAATTCCAACACAATT +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKIQWSP*QNSNTI
Trigger: AATTGTGTTGGAATTTTGGCAGGGACTCCATTGAAT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTACAGCCAGTGTGATTaGTTCATGTCCTTCAGTCAA +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLYSQCD*FMSFSQ
Trigger: TTGACTGAAGGACATGAAGCAATCACACTGGCTGTA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCTTATGTTTACCTTCATaGCTAAGTAACTTTCTGGTC +
Preference number: 2 (lower is better)
Translates to: DPPKSTHGGKNASTCICSLCLPS*LSNFLV
Trigger: GACCAGAAAGTTACTTAGGCATGAAGGTAAACATAA...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTACCTTCAACAGAGGAATaGATACAGAAAATGTGGTAC +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLPSTEE*IQKMWY
Trigger: GTACCACATTTTCTGTATCCATTCCTCTGTTGAAGG...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGACAACACTAAGATTATaGCTCACAGCAGTCATAATG +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKTTLRL*LTAVIM
Trigger: CATTATGACTGCTGTGAGCCATAATCTTAGTGTTGT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGTTGCTTTCCCCTTTTTaGAGTGCCACATTGGGCCTC +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLLSPF*SATLGL
Trigger: GAGGCCCAATGTGGCACTCCAAAAAGGGGAAAGCAA...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTAAACAAAAGACTCAGATaGAGGAGTAGTTCTCATGTA +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLNKRLR*RSSSHV
Trigger: TACATGAGAACTACTCCTTCATCTGAGTCTTTTGTT...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GATCAAGGTCCTAAAAAGTATTCCATTTCAGATCTCACAGTCCTTACCCAATTACCTCTCCCACTCAAATaGAGTATCTCTCTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: DQGPKKYSISDLTVLTQLPLPLK*SISLSL
Trigger: GAGAGAGAGAGAGATACTTCATTTGAGTGGGAGAGG...TAATTGGGTAAGGACTGTGAGATCTGAAATGGAATACTTTTTAGGACCTTGATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCACCCTCAGTCAGATaGATCCAAAGATCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIAPSVR*IQRSRS
Trigger: GGACCTTGATCTTTGGATTCATCTGACTGAGGGTGC...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAGCACCCTCAGTCAGATaGATCCAAAGATCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEAPSVR*IQRSRS
Trigger: GGACCTTGATCTTTGGATTCATCTGACTGAGGGTGC...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAATGGTATTGGTACAGTaGCAAACAGTTCAATCAGTT +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLMVLVQ*QTVQSV
Trigger: AACTGATTGAACTGTTTGTCACTGTACCAATACCAT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAAGTGGAATTGCATGCTaGTCCAAACATTTTGGAAAT +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLSGIAC*SKHFGN
Trigger: ATTTCCAAAATGTTTGGATCAGCATGCAATTCCACT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAATTCCAACACAATCAGTTCCATCTGAAATaGACAACTAAGGACACCATG +
Preference number: 2 (lower is better)
Translates to: CQKQSTDSMESLPKFQHNQFHLK*TTKDTM
Trigger: CATGGTGTCCTTAGTTGTTCATTTCAGATGGAACTG...ATTGTGTTGGAATTTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTCTCAGGTTGCTGGTGTaGAAAAATAAAAGTACCAGT +
Preference number: 2 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSLRLLV*KNKSTS
Trigger: ACTGGTACTTTTATTTTTTCACACCAGCAACCTGAG...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAAAGCATCTCATGAAGTaGGTGGGCCACAGCATATAT +
Preference number: 2 (lower is better)
Translates to: ERSIAQALLLFSIIINSQKHLMK*VGHSIY
Trigger: ATATATGCTGTGGCCCACTCACTTCATGAGATGCTT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGATGTGGTAGACAGGGATaGAAGTCATCCAAACACTGC +
Preference number: 2 (lower is better)
Translates to: FSSILATIRQCIGPSKTRCGRQG*KSSKHC
Trigger: GCAGTGTTTGGATGACTTTCATCCCTGTCTACCACA...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTTGTGGGAAGGCTTGGTaGTGTTCCTACATGACTGAT +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGCGKAW*CSYMTD
Trigger: ATCAGTCATGTAGGAACAGCACCAAGCCTTCCCACA...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGACAAAGTCTCTTCAGTaGCTTCCAGGTCCCTCAGTA +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKTKSLQ*LPGPSV
Trigger: TACTGAGGGACCTGGAAGGCACTGAAGAGACTTTGT...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCAGTTTTTCATCTCCATaGCTGCCTCCATTTCTGATT +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPSFSSP*LPPFLI
Trigger: AATCAGAAATGGAGGCAGGCATGGAGATGAAAAACT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTATTATACTGTGTAGCCTaGTTCAAATTCTGGTTCATG +
Preference number: 2 (lower is better)
Translates to: PLPPYASEEKLINPSAPLLYCVA*FKFWFM
Trigger: CATGAACCAGAATTTGAAGCAGGCTACACAGTATAA...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAACTTGAGCTGAGAGTTTaGGGAAAACCTTATTTTCAT +
Preference number: 2 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKLELRV*GKPYFH
Trigger: ATGAAAATAAGGTTTTCCCCAAACTCTCAGCTCAAG...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATACTCATGGAACAGAGTaGCTTCTCTCATCAAAAACA +
Preference number: 2 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHTHGTE*LLSSKT
Trigger: TGTTTTTGATGAGAGAAGCCACTCTGTTCCATGAGT...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCATATAGCCTGCACTCATaGAACAGAGTGGCTTCTCTC +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSYSLHS*NRVASL
Trigger: GAGAGAAGCCACTCTGTTCCATGAGTGCAGGCTATA...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGAATTCTTCAAAGACATaGAAAGGGCAATTCTCAACT +
Preference number: 2 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKNSSKT*KGQFST
Trigger: AGTTGAGAATTGCCCTTTCCATGTCTTTGAAGAATT...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCAATCTACAGATTCAATaGAGTCCCTGCCAAAATTCC +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPNLQIQ*SPCQNS
Trigger: GGAATTTTGGCAGGGACTCCATTGAATCTGTAGATT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAAGAAACTTCTGTAGCTaGGAAATAACCTCAACAAAG +
Preference number: 2 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLRNFCS*EITSTK
Trigger: CTTTGTTGAGGTTATTTCCCAGCTACAGAAGTTTCT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATGCATCCCCAAATATGTaGGACACAATGAAAACCAAA +
Preference number: 2 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHASPNM*DTMKTK
Trigger: TTTGGTTTTCATTGTGTCCCACATATTTGGGGATGC...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCGCTTGGTCTTCATCTTaGTCCTTTCAAAATTTGAGC +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPAWSSS*SFQNLS
Trigger: GCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGC...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 90 bp CAGCAGAAGTTGGAGAAGATGTGGAGAAACAGAGACATTCTTCCATaGTCAGTGGAATTGCATGCTGATCCAAACATTTTGGAAATCAAT +
Preference number: 2 (lower is better)
Translates to: QQKLEKMWRNRDILP*SVELHADPNILEIN
Trigger: ATTGATTTCCAAAATGTTTGGATCAGCATGCAATTCCACTGACAATGGAAGAATGTCTCTGTTTCTCCACATCTTCTCCAACTTCTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 90 bp AATTGCAAATGGATAGCTTGGTCTTCATCTTGGTCCTTTCAAAATTaGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGC +
Preference number: 2 (lower is better)
Translates to: NCKWIAWSSSWSFQN*SNIFCHLCALLLDC
Trigger: GCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCGACCTAAAGATTTCCTaGGTTATGCCAGTGTTTTCA +
Preference number: 2 (lower is better)
Translates to: CNKDTCSPKMIATVFIIADLKIS*VMPVFS
Trigger: TGAAAACACTGGCATAACTCAGGAAATCTTTAGGTC...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATCCTCTCCCACTCAAATaGAGTATCTCTCTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDPLPLK*SISLSL
Trigger: GAGAGAGAGAGAGATACTTCATTTGAGTGGGAGAGG...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGGCCCTACTAAAAGACTaGGGAATAAAGATAGCCAAA +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQALLKD*GIKIAK
Trigger: TTTGGCTATCTTTATTCCTCAGTCTTTTAGTAGGGC...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAGCTGAAGTCAGCCAGTaGGAACCAAAGAGAACAGTA +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEAEVSQ*EPKRTV
Trigger: TACTGTTCTCTTTGGTTCTCACTGGCTGACTTCAGC...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATACTTCACAGCTCTTCTaGAAGTTCAAGAACTATAAG +
Preference number: 2 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHTSQLF*KFKNYK
Trigger: CTTATAGTTCTTGAACTTTCAGAAGAGCTGTGAAGT...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTACTTCACAGCTCTTCTaGAAGTTCAAGAACTATAAG +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLTSQLF*KFKNYK
Trigger: CTTATAGTTCTTGAACTTTCAGAAGAGCTGTGAAGT...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCAGTGGAATTGCATGCTaGTCCAAACATTTTGGAAAT +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPSGIAC*SKHFGN
Trigger: ATTTCCAAAATGTTTGGATCAGCATGCAATTCCACT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTAAATTCACCTACCTCTaGCTCCCAAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIKFTYL*LPSAGI
Trigger: AATCCCAGCACTTGGGAGTCAGAGGTAGGTGAATTT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTTCACTACTGTAGTTTaGAGGGTATACTGTTTGGAT +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLFTTVV*RVYCLD
Trigger: ATCCAAACAGTATACCCTTCAAACTACAGTAGTGAA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGAGTGATGCTAGACAGTaGAAAGATTTAGGGCCATTT +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQSDARQ*KDLGPF
Trigger: AAATGGCCCTAAATCTTTGCACTGTCTAGCATCACT...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAACCCCTGCCTCCTTATaGCTCAGAGGAAAAATTAAT +
Preference number: 2 (lower is better)
Translates to: ERSIAQALLLFSIIINSQTPASL*LRGKIN
Trigger: ATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGGT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTATAATATTTATAGCCTaGACTCATGGAACAGAGTGG +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLIIFIA*THGTEW
Trigger: CCACTCTGTTCCATGAGTGCAGGCTATAAATATTAT...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCGGAAATCTCATTTTCTaGGCAGGGGATACAAACAAA +
Preference number: 2 (lower is better)
Translates to: CNKDTCSPKMIATVFIIAGNLIF*AGDTNK
Trigger: TTTGTTTGTATCCCCTGCCCAGAAAATGAGATTTCC...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR CAA 90 bp AGGCTACCTACACATAAATTGCAAATGGATAGCTTGGTCTTCATCTaGGTCCTTTCAAAATTTGAGCAACATCTTTTGCCATCTTTGTGC +
Preference number: 2 (lower is better)
Translates to: RLPTHKLQMDSLVFI*VLSKFEQHLLPSLC
Trigger: GCACAAAGATGGCAAAAGATGTTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCACAAATATGGATACTTaGACTTTGACAAAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: CNKDTCSPKMIATVFIIATNMDT*TLTKRP
Trigger: TGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGT...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp ACCCTCAGTCAGATGAATCCAAAGATCAAGGTCCTAAAAAGTATTCCATTTCAGGTTAAGTGTTTGGAGTaGTCAGGAATTCAAGGCATA +
Preference number: 2 (lower is better)
Translates to: TLSQMNPKIKVLKSIPFQVKCLE*SGIQGI
Trigger: TATGCCTTGAATTCCTGATCACTCCAAACACTTAAC...CTGAAATGGAATACTTTTTAGGACCTTGATCTTTGGATTCATCTGACTGAGGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp ACCCTCAGTCAGATGAATCCAAAGATCAAGGTCCTAAAAAGTATTCCATTTCAGCTATCCAGTTCCATCTaGAATGAACAACTAAGGACA +
Preference number: 2 (lower is better)
Translates to: TLSQMNPKIKVLKSIPFQLSSSI*NEQLRT
Trigger: TGTCCTTAGTTGTTCATTTCAGATGGAACTGGATAG...CTGAAATGGAATACTTTTTAGGACCTTGATCTTTGGATTCATCTGACTGAGGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGAATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCAC +
Preference number: 2 (lower is better)
Translates to: FSSILATIRQCIGPSKTRIEGRI*SISVAH
Trigger: GTGGGCTACAGATATTGATCAGATTCTACCCTCAAT...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATATATCCTTTCCTTCCTaGGGGGATTTTCTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDISFPS*GDFLSP
Trigger: AGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATAT...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp TATTCCTCCTTTCCCTATATAGCTTCTACTGCTTTTCAATACAACCACTTCCCAGGTTTCCTGAACTTGTaGAAAGAATTTGTCTGTGGT +
Preference number: 2 (lower is better)
Translates to: YSSFPYIASTAFQYNHFPGFLNL*KEFVCG
Trigger: ACCACAGACAAATTCTTTTCACAAGTTCAGGAAACC...TGGGAAGTGGTTGTATTGAAAAGCAGTAGAAGCTATATAGGGAAAGGAGGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCTATGCATATCTTTGTaGCCTGCCATTGGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLCISL*PAIGFL
Trigger: AAGAAAGCCAATGGCAGGTCACAAAGATATGCATAG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGACCCCTGCCTCCTTATaGCTCAGAGGAAAAATTAAT +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKTPASL*LRGKIN
Trigger: ATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGGT...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTCTTCAGATAGTGCCATaGATAGCCAATGATAATATT +
Preference number: 2 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSLQIVP*IANDNI
Trigger: AATATTATCATTGGCTATGCATGGCACTATCTGAAG...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGGGCAGGGAAGTAATTaGTTAAGTCCTGAGGAGAAT +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIGQGSN*LSPEEN
Trigger: ATTCTCCTCAGGACTTAAGCAATTACTTCCCTGCCC...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCTACCTACACATAAATTaGAAATGGATAGCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPYLHIN*KWIAWS
Trigger: AGACCAAGCTATCCATTTGCAATTTATGTGTAGGTA...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAACTCATGGAACAGAGTaGCTTCTCTCATCAAAAACA +
Preference number: 2 (lower is better)
Translates to: ERSIAQALLLFSIIINSQTHGTE*LLSSKT
Trigger: TGTTTTTGATGAGAGAAGCCACTCTGTTCCATGAGT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTACCAAAGAGTACACATaGAGGGAAAAATGCCTCCAC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIITKEYT*REKCLH
Trigger: GTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTTTGTGACCTGCCATTaGCTTTCTTTCACTTATTTT +
Preference number: 2 (lower is better)
Translates to: PGSELHWNIIFPEPIATLFVTCH*LSFTYF
Trigger: AAAATAAGTGAAAGAAAGCCAATGGCAGGTCACAAA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCGTGTCCTGTAACAAGTaGAGGAAAATCTATGCATAT +
Preference number: 2 (lower is better)
Translates to: CNKDTCSPKMIATVFIIAVSCNK*RKIYAY
Trigger: ATATGCATAGATTTTCCTCCACTTGTTACAGGACAC...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTGCCCTACTAAAAGACTaGGGAATAAAGATAGCCAAA +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGALLKD*GIKIAK
Trigger: TTTGGCTATCTTTATTCCTCAGTCTTTTAGTAGGGC...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAGGTCAGGCAAAATATTaGAACACTTTCATAACTGCT +
Preference number: 2 (lower is better)
Translates to: ERSIAQALLLFSIIINSQGQAKY*NTFITA
Trigger: AGCAGTTATGAAAGTGTTTCAATATTTTGCCTGACC...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAATTTACAACCAACCATTaGACTGAACATTGTGTCCCC +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEFTTNH*TEHCVP
Trigger: GGGGACACAATGTTCAGTTCAATGGTTGGTTGTAAA...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCTACTCCCTGAAGAATTaGGTTGGAATTTTGATGGGG +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTYSLKN*VGILMG
Trigger: CCCCATCAAAATTCCAACTCAATTCTTCAGGGAGTA...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCTATTGTGCAGTGCATaGCAACAAGTGATTGATGAT +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLLCSA*QQVIDD
Trigger: ATCATCAATCACTTGTTGGCATGCACTGCACAATAG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAATGTAATAAGGACACATaGTCCCCTAAGATGATAGCC +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQECNKDT*SPKMIA
Trigger: GGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TATAGTGATACCCATCACAAATTTTTATCTTCCCACGTGCTGGATTATCATGTTTGTGAGATCGGAGTGTaGTTGAGCAAACTGTATTCA +
Preference number: 2 (lower is better)
Translates to: YSDTHHKFLSSHVLDYHVCEIGV*LSKLYS
Trigger: TGAATACAGTTTGCTCAAGCACACTCCGATCTCACA...AACATGATAATCCAGCACGTGGGAAGATAAAAATTTGTGATGGGTATCACTATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTAACCTTATTTTCATGTaGGAAGGCTTGGTGCTGTTC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIINLIFM*EGLVLF
Trigger: GAACAGCACCAAGCCTTCCCACATGAAAATAAGGTT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGAATTCTTCAAAGACATaGAAAGGGCAATTCTCAACT +
Preference number: 2 (lower is better)
Translates to: SSILATIRQCIGPSKTRQNSSKT*KGQFST
Trigger: AGTTGAGAATTGCCCTTTCCATGTCTTTGAAGAATT...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTAATCTACAGATTCAATaGAGTCCCTGCCAAAATTCC +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGNLQIQ*SPCQNS
Trigger: GGAATTTTGGCAGGGACTCCATTGAATCTGTAGATT...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCATATGTAGCTTGGAATaGCCTTGTCAGACATCAAGG +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTICSLE*PCQTSR
Trigger: CCTTGATGTCTGACAAGGCCATTCCAAGCTACATAT...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAATTCCAACACAATAGGAATTGTATTCCTTaGTCATCACTTGTAACAATC +
Preference number: 2 (lower is better)
Translates to: CQKQSTDSMESLPKFQHNRNCIP*SSLVTI
Trigger: GATTGTTACAAGTGATGACCAAGGAATACAATTCCT...ATTGTGTTGGAATTTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR TCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCTGGATACTTGAACTTTaGCAAAGAGGCCAAAAACAC +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTWILEL*QRGQKH
Trigger: GTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCA...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAACAAATATGGATACTTaGACTTTGACAAAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSTNMDT*TLTKRP
Trigger: TGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAGCTACTGGATTGGTATaGTTACATAGTAAAAGTGGC +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEATGLV*LHSKSG
Trigger: GCCACTTTTACTATGTAATCATACCAATCCAGTAGC...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCTACTGGATTGGTATaGTTACATAGTAAAAGTGGC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIATGLV*LHSKSG
Trigger: GCCACTTTTACTATGTAATCATACCAATCCAGTAGC...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGAGGTCAGGCAAAATATTaGAACACTTTCATAACTGCT +
Preference number: 2 (lower is better)
Translates to: FSSILATIRQCIGPSKTRGQAKY*NTFITA
Trigger: AGCAGTTATGAAAGTGTTTCAATATTTTGCCTGACC...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTACCAGCAGCATTTGTTaGAAATGCTGCCATTTTTCA +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIITSSIC*KCCHFS
Trigger: TGAAAAATGGCAGCATTTTCAACAAATGCTGCTGGT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCTTTCTCTGCCTCATATaGCAAGATATTTTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTFLCLI*QDIFQA
Trigger: GGCTTGGAAAATATCTTGGCATATGAGGCAGAGAAA...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAATAATATTTATAGCCTaGACTCATGGAACAGAGTGG +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSIIFIA*THGTEW
Trigger: CCACTCTGTTCCATGAGTGCAGGCTATAAATATTAT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCACTATCCTGTAGTAATTaGTTATTACCTGGATCAGAG +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSLSCSN*LLPGSE
Trigger: CTCTGATCCAGGTAATAAGCAATTACTACAGGATAG...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTCTATCCTGTAGTAATTaGTTATTACCTGGATCAGAG +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGLSCSN*LLPGSE
Trigger: CTCTGATCCAGGTAATAAGCAATTACTACAGGATAG...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCATTGTCAGTGGAATTaGATGCTGATCCAAACATTT +
Preference number: 2 (lower is better)
Translates to: SCILLLMLASVDPNLFLKHCQWN*MLIQTF
Trigger: AAATGTTTGGATCAGCATGCAATTCCACTGACAATG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCACTTGAGCTGAGAGTTTaGGGAAAACCTTATTTTCAT +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSLELRV*GKPYFH
Trigger: ATGAAAATAAGGTTTTCCCCAAACTCTCAGCTCAAG...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAGAAGACCTCAGAAAATaGAAAGATCTACTATGCTAC +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSEDLRK*KDLLCY
Trigger: GTAGCATAGTAGATCTTTCCATTTTCTGAGGTCTTC...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp GATCAAGGTCCTAAAAAGTATTCCATTTCAGATCTCACAGTCCTTACCCAATTAGAAGACCTCAGAAAATaGAAAGATCTACTATGCTAC +
Preference number: 2 (lower is better)
Translates to: DQGPKKYSISDLTVLTQLEDLRK*KDLLCY
Trigger: GTAGCATAGTAGATCTTTCCATTTTCTGAGGTCTTC...TAATTGGGTAAGGACTGTGAGATCTGAAATGGAATACTTTTTAGGACCTTGATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTCCTTCAACAGAGGAATaGATACAGAAAATGTGGTAC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIPSTEE*IQKMWY
Trigger: GTACCACATTTTCTGTATCCATTCCTCTGTTGAAGG...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCTGCCATTTTTCACTaGATGATTTTAGTACCCTTG +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIAAIFH*MILVPL
Trigger: CAAGGGTACTAAAATCATCCAGTGAAAAATGGCAGC...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAAACAAAAGACTCAGATaGAGGAGTAGTTCTCATGTA +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQENKRLR*RSSSHV
Trigger: TACATGAGAACTACTCCTTCATCTGAGTCTTTTGTT...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCATTTTCCTTGATATCTaGGCCTGTTATGTAGGTACT +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTIFLDI*ACYVGT
Trigger: AGTACCTACATAACAGGCTCAGATATCAAGGAAAAT...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAATTCGATGGTGGCAATaGACATCTAAAATATGTCCA +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEIRWWQ*TSKICP
Trigger: TGGACATATTTTAGATGTTCATTGCCACCATCGAAT...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR GCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAATTTCCAATAAATGGTaGTGGACTACTTGTTGGTCT +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEISNKW*WTTCWS
Trigger: AGACCAACAAGTAGTCCAGCACCATTTATTGGAAAT...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTCTTCAGATAGTGCCATaGATAGCCAATGATAATATT +
Preference number: 2 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGLQIVP*IANDNI
Trigger: AATATTATCATTGGCTATGCATGGCACTATCTGAAG...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR GCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCACTTCAGATAGTGCCATaGATAGCCAATGATAATATT +
Preference number: 2 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSLQIVP*IANDNI
Trigger: AATATTATCATTGGCTATGCATGGCACTATCTGAAG...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTCTTGAGCTGAGAGTTTaGGGAAAACCTTATTTTCAT +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIILELRV*GKPYFH
Trigger: ATGAAAATAAGGTTTTCCCCAAACTCTCAGCTCAAG...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTAAGATCACATGGTATTaGTACAGTGACAAACAGTTC +
Preference number: 2 (lower is better)
Translates to: KCNKDTCSPKMIATVFIIKITWY*YSDKQF
Trigger: GAACTGTTTGTCACTGTACCAATACCATGTGATCTT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCAAGATCACATGGTATTaGTACAGTGACAAACAGTTC +
Preference number: 2 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTKITWY*YSDKQF
Trigger: GAACTGTTTGTCACTGTACCAATACCATGTGATCTT...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAACTTCTGTTAAGTGTTTaGAGTGATCAGGAATTCAAG +
Preference number: 2 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQELLLSV*SDQEFK
Trigger: CTTGAATTCCTGATCACTCCAAACACTTAACAGAAG...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TGCCTTCCAGGTCCCTCAGTAACTCTGGAGCCGCTCTaGACAGAGTCAGGTCAGGCTGGGCCGATGAGAAGG +
Preference number: 3 (lower is better)
Translates to: CLPGPSVTLEPL*TESGQAGPMRR
Trigger: CCTTCTCATCGGCCCAGCCTGACCTGACTCTGTTCAGAGCGGCTCCAGAGTTACTGAGGGACCTGGAAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp ACAGGGTCCCACCAGGGTTCAAGACAGAAGCTCAACTaGAGACCAGGCTGTCTGTGTGTAGCCCCTTGCCCC +
Preference number: 3 (lower is better)
Translates to: TGSHQGSRQKLN*RPGCLCVAPCP
Trigger: GGGGCAAGGGGCTACACACAGACAGCCTGGTCTCCAGTTGAGCTTCTGTCTTGAACCCTGGTGGGACCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp CAGAGGTTTGACAAAAAGATCTCTGTCCAGGCCTGGTaGGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCA +
Preference number: 3 (lower is better)
Translates to: QRFDKKISVQAW*EGSSKGKQVQA
Trigger: TGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAGATCTTTTTGTCAAACCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGCACAAATATGGATACTaGAACTTTGACAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: LCPGLVRGFQQREASAGRHKYGY*NFDKEA
Trigger: GGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTG...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AGCCGCTCTGAACAGAGTCAGGTCAGGCTGGGCCGATaGGAAGGTAACTATCCAGTGAGAAATGCAGTAGGA +
Preference number: 3 (lower is better)
Translates to: SRSEQSQVRLGR*EGNYPVRNAVG
Trigger: TCCTACTGCATTTCTCACTGGATAGTTACCTTCTCATCGGCCCAGCCTGACCTGACTCTGTTCAGAGCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp TACCAGAGGTTTGACAAAAAGATCTCTGTCCAGGCCTaGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAG +
Preference number: 3 (lower is better)
Translates to: YQRFDKKISVQA*CEGSSKGKQVQ
Trigger: CTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAGATCTTTTTGTCAAACCTCTGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTCTGGGTACCAGAGGTTaGACAAAAAGATCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPLGTRG*TKRSLS
Trigger: GGACAGAGATCTTTTTGTCAAACCTCTGGTACCCAG...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp CTGTTCTCCTGGAAGGGAGTCAATTTTGTCCCTGGTTaGAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTTG +
Preference number: 3 (lower is better)
Translates to: LFSWKGVNFVPG*RCGDLLCLWFL
Trigger: CAAGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp GGGAAAAATGCCTCCACTTGCATATGTAGCTTGGAATaGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTT +
Preference number: 3 (lower is better)
Translates to: GKNASTCICSLE*PCQTSRGGEAL
Trigger: AAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACATATGCAAGTGGAGGCATTTTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AGACTGAAGGAAAGGCAATCCAGGGACTGCCCAACCTaGGGAACCATCCCATATACAAGTACCAAAGCCAGA +
Preference number: 3 (lower is better)
Translates to: RLKERQSRDCPT*GTIPYTSTKAR
Trigger: TCTGGCTTTGGTACTTGTATATGGGATGGTTCCCCAGGTTGGGCAGTCCCTGGATTGCCTTTCCTTCAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp TCTTTGTGCCCTGCTATTGGATTGCTTTCCCCTTTTTaGAGTGCCACATTGGGCCTCAGCACTAGTCCTGCT +
Preference number: 3 (lower is better)
Translates to: SLCPAIGLLSPF*SATLGLSTSPA
Trigger: AGCAGGACTAGTGCTGAGGCCCAATGTGGCACTCCAAAAAGGGGAAAGCAATCCAATAGCAGGGCACAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCCAAAGCCAGACACTATaGTGCAGTGCATGCCAACAA +
Preference number: 3 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSQSQTL*CSACQQ
Trigger: TTGTTGGCATGCACTGCACAATAGTGTCTGGCTTTG...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATCCCCTCTCAGCCTGTTaGTTCTCTCTCTCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHPLSAC*FSLSLS
Trigger: AGAGAGAGAGAGAGAGAACAAACAGGCTGAGAGGGG...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCTCTaGCTAGAGCTGGCCTCTTTGGAGGCAGTTTATGCT +
Preference number: 3 (lower is better)
Translates to: LVIPGVILPRFL*LELASLEAVYA
Trigger: AGCATAAACTGCCTCCAAAGAGGCCAGCTCTAGTCAGAGGAACCTGGGCAAGATAACACCAGGGATAACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp GCTTTTAGAAAACCTAAAGGGACAATTGAAGCTTCCTaGCCAGAGATCCTCTCTAGTGCTGGCCGAAGGTCC +
Preference number: 3 (lower is better)
Translates to: AFRKPKGTIEAS*PEILSSAGRRS
Trigger: GGACCTTCGGCCAGCACTAGAGAGGATCTCTGGCCAGGAAGCTTCAATTGTCCCTTTAGGTTTTCTAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp ACTACAGAGACAAATATCCTGGACCTCTATGAAATCTaGGAAGCTACCCCACCAACTGGAGAGCAGGCTGAG +
Preference number: 3 (lower is better)
Translates to: TTETNILDLYEI*EATPPTGEQAE
Trigger: CTCAGCCTGCTCTCCAGTTGGTGGGGTAGCTTCCCAGATTTCATAGAGGTCCAGGATATTTGTCTCTGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTCTAGAGCTGGCCTCTTaGGAGGCAGTTTATGCTCAG +
Preference number: 3 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSLELAS*EAVYAQ
Trigger: CTGAGCATAAACTGCCTCCAAAGAGGCCAGCTCTAG...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCCAGACACTTTACACATaGATCCATGTTTGTCATGTT +
Preference number: 3 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLQTLYT*IHVCHV
Trigger: AACATGACAAACATGGATCAATGTGTAAAGTGTCTG...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR TCA 72 bp CTTGAACAGTCGCACCTAATGGATACTGAGGGAAGGTaGGCCCGCACACCTCTTAAAACAACCTGTCTTTTC +
Preference number: 3 (lower is better)
Translates to: LEQSHLMDTEGR*ARTPLKTTCLF
Trigger: GAAAAGACAGGTTGTTTTAAGAGGTGTGCGGGCTCACCTTCCCTCAGTATCCATTAGGTGCGACTGTTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp CATGGTGCATATGAGAATGATGTATTTGGGTGCCCCTaGCACAAGCAGCCACCTCATTCTTCTTCCTGGAAC +
Preference number: 3 (lower is better)
Translates to: HGAYENDVFGCP*HKQPPHSSSWN
Trigger: GTTCCAGGAAGAAGAATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATACATCATTCTCATATGCACCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CCA 72 bp AGGAGACATGATCAAATTTCTTCTGTCCCACGTACGTaGAAATTACCATCCACAGGGTCCCACCAGGGTTCA +
Preference number: 3 (lower is better)
Translates to: RRHDQISSVPRT*KLPSTGSHQGS
Trigger: TGAACCCTGGTGGGACCCTGTGGATGGTAATTTCCACGTACGTGGGACAGAAGAAATTTGATCATGTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGCTGGGTACCAGAGGTTaGACAAAAAGATCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWLGTRG*TKRSLS
Trigger: GGACAGAGATCTTTTTGTCAAACCTCTGGTACCCAG...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCCACAAATATGGATACTaGAACTTTGACAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSHKYGY*NFDKEA
Trigger: GGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTG...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTAGAAGGCTTAGATTTTaGGACTTCTCTGGAACCCCC +
Preference number: 3 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSRRLRF*DFSGTP
Trigger: GGGGGTTCCAGAGAAGTCCAAAAATCTAAGCCTTCT...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTTGGTCAGGCAAAATATaGAAACACTTTCATAACTGC +
Preference number: 3 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPWSGKI*KHFHNC
Trigger: GCAGTTATGAAAGTGTTTCAATATTTTGCCTGACCA...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCAAAGCCAGACACTATaGTGCAGTGCATGCCAACAA +
Preference number: 3 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKQSQTL*CSACQQ
Trigger: TTGTTGGCATGCACTGCACAATAGTGTCTGGCTTTG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTCATGCCTGTCTCCATTaGGTTATCCCTGGTGTTATC +
Preference number: 3 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSHACLH*VIPGVI
Trigger: GATAACACCAGGGATAACCAAATGGAGACAGGCATG...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AGATTTCTGAGTTTGAGGCCAGGATGGTCTACAGAGTaGTTTCCAGGACAACCAGGGATACACAGAGAAACC +
Preference number: 3 (lower is better)
Translates to: RFLSLRPGWSTE*FPGQPGIHRET
Trigger: GGTTTCTCTGTGTATCCCTGGTTGTCCTGGAAATCACTCTGTAGACCATCCTGGCCTCAAACTCAGAAATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp ATGTATCAGGCAGATTCCTGGCCAAGAAAGCTACAGTaGAACCTGCTAGAGCAACAGAGCCCATGTATCCAA +
Preference number: 3 (lower is better)
Translates to: MYQADSWPRKLQ*NLLEQQSPCIQ
Trigger: TTGGATACATGGGCTCTGTTGCTCTAGCAGGTTTCACTGTAGCTTTCTTGGCCAGGAATCTGCCTGATACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CCA 72 bp TGTCTCTGGTTCTTGATGACCTTCTGTGTACCTGTTTaGGGCAGACCTCATGTGTTCCTTTCCATGTTAACC +
Preference number: 3 (lower is better)
Translates to: CLWFLMTFCVPV*GRPHVFLSMLT
Trigger: GGTTAACATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAGAACCAGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTTGTTACATACAGCTCTaGGAACAAAAGACTCAGATG +
Preference number: 3 (lower is better)
Translates to: ESILSLVEGVETSCVSGSCYIQL*EQKTQM
Trigger: CATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACA...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTTGTCCATACCTTCTATaGCATCCTCTATGGCTGAGA +
Preference number: 3 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSCPYLL*HPLWLR
Trigger: TCTCAGCCATAGAGGATGCAATAGAAGGTATGGACA...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAAATTCACTACTGTAGTTaGAAGGGTATACTGTTTGGA +
Preference number: 3 (lower is better)
Translates to: LGMALSDIKGRRGACSYEIHYCS*KGILFG
Trigger: TCCAAACAGTATACCCTTCAAACTACAGTAGTGAAT...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR TCA 72 bp CAATCTGAGTATGGAGAAGCAGAACATGAGGAATATTaGGCTCCTGAGTATGACAGGTGGGTCCAGAATCAG +
Preference number: 3 (lower is better)
Translates to: QSEYGEAEHEEY*APEYDRWVQNQ
Trigger: CTGATTCTGGACCCACCTGTCATACTCAGGAGCTCAATATTCCTCATGTTCTGCTTCTCCATACTCAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AAGAACAACTACAGAGACAAATATCCTGGACCTCTATaGAATCTGGGAAGCTACCCCACCAACTGGAGAGCA +
Preference number: 3 (lower is better)
Translates to: KNNYRDKYPGPL*NLGSYPTNWRA
Trigger: TGCTCTCCAGTTGGTGGGGTAGCTTCCCAGATTTCATAGAGGTCCAGGATATTTGTCTCTGTAGTTGTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AACAGCAGATATCCTTTCCTTCCTGAGGGGATTTTCTaGGTCCTGGTGTGCAAGGCATACTACATATTGAGG +
Preference number: 3 (lower is better)
Translates to: NSRYPFLPEGIF*VLVCKAYYILR
Trigger: CCTCAATATGTAGTATGCCTTGCACACCAGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATATCTGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 72 bp CCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTaGATATGTAGCTTGGAATGGCCTTGTCAGACATCA +
Preference number: 3 (lower is better)
Translates to: PKSTHGGKNAST*ICSLEWPCQTS
Trigger: TGATGTCTGACAAGGCCATTCCAAGCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp TGTCTTAGCCAAGATTGTAGAGGTAGCCACAGTGAATaGAATGGCAAATGTGGTCTGCTGCAGGATACAGAT +
Preference number: 3 (lower is better)
Translates to: CLSQDCRGSHSE*NGKCGLLQDTD
Trigger: ATCTGTATCCTGCAGCAGACCACATTTGCCATTGCATTCACTGTGGCTACCTCTACAATCTTGGCTAAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCCACAAATATGGATACTaGAACTTTGACAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: DPPKSTHGGKNASTCICSHKYGY*NFDKEA
Trigger: GGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTG...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTCTGGGTACCAGAGGTTaGACAAAAAGATCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSLGTRG*TKRSLS
Trigger: GGACAGAGATCTTTTTGTCAAACCTCTGGTACCCAG...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATAACCTAAAGGGACAATaGAAGCTTCCTGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHNLKGQ*KLPGQR
Trigger: TCTCTGGCCAGGAAGCTTCAATTGTCCCTTTAGGTT...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp CCACAGGTCAGAGAAACACGTGCCCTACTAAAAGACTaGGGAATAAAGATAGCCAAAAAGCAAGCCTCCTTT +
Preference number: 3 (lower is better)
Translates to: PQVRETRALLKD*GIKIAKKQASF
Trigger: AAAGGAGGCTTGCTTTTTGGCTATCTTTATTCCTCAGTCTTTTAGTAGGGCACGTGTTTCTCTGACCTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GCCCATGTATCCAAGGACACAGTAGAAGGCAATCACTaGACCTTTGTTGCAAACAATGATGATGTGTCCATG +
Preference number: 3 (lower is better)
Translates to: AHVSKDTVEGNH*TFVANNDDVSM
Trigger: CATGGACACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGTCCTTGGATACATGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CCA 72 bp GTGGAAGAACTGGGTTCTGACAGTGCTAAATTACATTaGCTTCCATCACTTATGTTAGGACACATGCCTGTC +
Preference number: 3 (lower is better)
Translates to: VEELGSDSAKLH*LPSLMLGHMPV
Trigger: GACAGGCATGTGTCCTAACATAAGTGATGGAAGCCAATGTAATTTAGCACTGTCAGAACCCAGTTCTTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCGAGGCCACAATTACTTaGACACCTAAACCCCACAAA +
Preference number: 3 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPEATIT*TPKPHK
Trigger: TTTGTGGGGTTTAGGTGTCAAAGTAATTGTGGCCTC...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATGAGGCCACAATTACTTaGACACCTAAACCCCACAAA +
Preference number: 3 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHEATIT*TPKPHK
Trigger: TTTGTGGGGTTTAGGTGTCAAAGTAATTGTGGCCTC...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCACTTGCATATGTAGCTaGGAATGGCCTTGTCAGACA +
Preference number: 3 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPTCICS*EWPCQT
Trigger: TGTCTGACAAGGCCATTCCAAGCTACATATGCAAGT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTATGTCCACCATAGTTaGGCAAAGGAAAATTCACTA +
Preference number: 3 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHYVHHS*AKENSL
Trigger: TAGTGAATTTTCCTTTGCCAAACTATGGTGGACATA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CAA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAATAGCTGTTGACCACTaGGAAGATGCTCTGAAAATC +
Preference number: 3 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLIAVDH*EDALKI
Trigger: GATTTTCAGAGCATCTTCCAAGTGGTCAACAGCTAT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CAA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCCACATTGATCCATGTTaGTCATGTTGGAAATCTCAT +
Preference number: 3 (lower is better)
Translates to: DPPKSTHGGKNASTCICSHIDPC*SCWKSH
Trigger: ATGAGATTTCCAACATGACAAACATGGATCAATGTG...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CAA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTAGTTTGGTTATTGGCTTaGACTATGGGAGTATCTCTG +
Preference number: 3 (lower is better)
Translates to: PLPPYASEEKLINPSAPLVWLLA*TMGVSL
Trigger: CAGAGATACTCCCATAGTCAAAGCCAATAACCAAAC...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CCA 72 bp CTTTTAGGTGATCAAGAGATTGCTGGGTGGAAGAACTaGGTTCTGACAGTGCTAAATTACATTGGCTTCCAT +
Preference number: 3 (lower is better)
Translates to: LLGDQEIAGWKN*VLTVLNYIGFH
Trigger: ATGGAAGCCAATGTAATTTAGCACTGTCAGAACCCAGTTCTTCCACCCAGCAATCTCTTGATCACCTAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp GTCACCATGTTGTGTTTCCTGTATGCAGTGAAATGCTaGGTCCTGTTTATGTATCCATTTGTTAGCCTGTGT +
Preference number: 3 (lower is better)
Translates to: VTMLCFLYAVKC*VLFMYPFVSLC
Trigger: ACACAGGCTAACAAATGGATACATAAACAGGACCCAGCATTTCACTGCATACAGGAAACACAACATGGTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AAATGTACCGCTTGGTCTTCTGTGTCCTGTAACAAGTaGAGGAAAATCTATGCATATCTTTGTGACCTGCCA +
Preference number: 3 (lower is better)
Translates to: KCTAWSSVSCNK*RKIYAYLCDLP
Trigger: TGGCAGGTCACAAAGATATGCATAGATTTTCCTCCACTTGTTACAGGACACAGAAGACCAAGCGGTACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTACACAAATATGGATACTaGAACTTTGACAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: PLPPYASEEKLINPSAPLHKYGY*NFDKEA
Trigger: GGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTG...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTATGTTACATACAGCTCTaGGAACAAAAGACTCAGATG +
Preference number: 3 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLCYIQL*EQKTQM
Trigger: CATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACA...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAATGTTACATACAGCTCTaGGAACAAAAGACTCAGATG +
Preference number: 3 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKCYIQL*EQKTQM
Trigger: CATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACA...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAAGAAGGCTTAGATTTTaGGACTTCTCTGGAACCCCC +
Preference number: 3 (lower is better)
Translates to: ERSIAQALLLFSIIINSQRRLRF*DFSGTP
Trigger: GGGGGTTCCAGAGAAGTCCAAAAATCTAAGCCTTCT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAGATCTAGAGAAAGGATaGAAGGAGCTGAAGGATTTT +
Preference number: 3 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLDLEKG*KELKDF
Trigger: AAAATCCTTCAGCTCCTTCAATCCTTTCTCTAGATC...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCCCCCTCTCAGCCTGTTaGTTCTCTCTCTCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTPLSAC*FSLSLS
Trigger: AGAGAGAGAGAGAGAGAACAAACAGGCTGAGAGGGG...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp CCAAGAGTCAAATTCCAGTTCCTTCCCAGCATTATTTaGCCATGTGTCTACTTCTTGCATAAGCATCTCATG +
Preference number: 3 (lower is better)
Translates to: PRVKFQFLPSII*PCVYFLHKHLM
Trigger: CATGAGATGCTTATGCAAGAAGTAGACACATGGTCAAATAATGCTGGGAAGGAACTGGAATTTGACTCTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 72 bp TCATCTTGGTCCTTTCAAAATTTGAGCAACATCTTTTaGCATCTTTGTGCCCTGCTATTGGATTGCTTTCCC +
Preference number: 3 (lower is better)
Translates to: SSWSFQNLSNIF*HLCALLLDCFP
Trigger: GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATTTTGAAAGGACCAAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp AGGCTGAGGTTGGAATTAGGCTACCTACACATAAATTaGAAATGGATAGCTTGGTCTTCATCTTGGTCCTTT +
Preference number: 3 (lower is better)
Translates to: RLRLELGYLHIN*KWIAWSSSWSF
Trigger: AAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCTAATTCCAACCTCAGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp GGAGGAAAATCTATGCATATCTTTGTGACCTGCCATTaGCTTTCTTTCACTTATTTTGCTGCATCATTGGGC +
Preference number: 3 (lower is better)
Translates to: GGKSMHIFVTCH*LSFTYFAASLG
Trigger: GCCCAATGATGCAGCAAAATAAGTGAAAGAAAGCCAATGGCAGGTCACAAAGATATGCATAGATTTTCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CAAATGAAGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAGGTATCTCATCTaGAGAATTCCTATAAGAGAG +
Preference number: 3 (lower is better)
Translates to: QMKYLSLSLSLSLSLSLSQRYLI*RIPIRE
Trigger: CTCTCTTATAGGAATTCTCAAGATGAGATACCTTTG...AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTTCATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCATCTAAAACAAGACAGACTAATAGCAACACAGCTGCTAAGCACCCTCAGTCACAAAGGTATCTCATCTaGAGAATTCCTATAAGAGAG +
Preference number: 3 (lower is better)
Translates to: PSKTRQTNSNTAAKHPQSQRYLI*RIPIRE
Trigger: CTCTCTTATAGGAATTCTCAAGATGAGATACCTTTG...TGACTGAGGGTGCTTAGCAGCTGTGTTGCTATTAGTCTGTCTTGTTTTAGATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCTTATTGAATGTTCCTTaGCCCCATGTAAAACTCCAC +
Preference number: 3 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPLLNVP*PHVKLH
Trigger: GTGGAGTTTTACATGGGGCAAAGGAACATTCAATAA...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAAGAAGGCTTAGATTTTaGGACTTCTCTGGAACCCCC +
Preference number: 3 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSRRLRF*DFSGTP
Trigger: GGGGGTTCCAGAGAAGTCCAAAAATCTAAGCCTTCT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGAAACCTAAAGGGACAATaGAAGCTTCCTGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: FSSILATIRQCIGPSKTRNLKGQ*KLPGQR
Trigger: TCTCTGGCCAGGAAGCTTCAATTGTCCCTTTAGGTT...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAATTCTGAGAGAACCTTaGATTACATCCAACACCCCC +
Preference number: 3 (lower is better)
Translates to: ERSIAQALLLFSIIINSQILREP*ITSNTP
Trigger: GGGGGTGTTGGATGTAATCAAAGGTTCTCTCAGAAT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTAATAGCAACAACTTTTaGGAGACAGAGAGTATGGTC +
Preference number: 3 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSNSNNF*ETESMV
Trigger: GACCATACTCTCTGTCTCCAAAAAGTTGTTGCTATT...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATTATTTTGCTGCATCATaGGGCCTCAGCGCTAGTCCT +
Preference number: 3 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDYFAAS*GLSASP
Trigger: AGGACTAGCGCTGAGGCCCAATGATGCAGCAAAATA...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTCTGGGTACCAGAGGTTaGACAAAAAGATCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: KCNKDTCSPKMIATVFIILGTRG*TKRSLS
Trigger: GGACAGAGATCTTTTTGTCAAACCTCTGGTACCCAG...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCAGAAGGCTTAGATTTTaGGACTTCTCTGGAACCCCC +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTRRLRF*DFSGTP
Trigger: GGGGGTTCCAGAGAAGTCCAAAAATCTAAGCCTTCT...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAAACCTAAAGGGACAATaGAAGCTTCCTGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQENLKGQ*KLPGQR
Trigger: TCTCTGGCCAGGAAGCTTCAATTGTCCCTTTAGGTT...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTAAACAGTTCAATCAGTaGAATAGAATGGATGACCCA +
Preference number: 3 (lower is better)
Translates to: PGSELHWNIIFPEPIATLKQFNQ*NRMDDP
Trigger: TGGGTCATCCATTCTATTCAACTGATTGAACTGTTT...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTGAATTGGTATTTTCCTaGATATCTGAGCCTGTTATG +
Preference number: 3 (lower is better)
Translates to: PGSELHWNIIFPEPIATLELVFS*ISEPVM
Trigger: CATAACAGGCTCAGATATCAAGGAAAATACCAATTC...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCCAAAGCCAGACACTATaGTGCAGTGCATGCCAACAA +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTQSQTL*CSACQQ
Trigger: TTGTTGGCATGCACTGCACAATAGTGTCTGGCTTTG...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCATCTGTAGCTTTTCTTaGGTCAAGATGGCCATTTTT +
Preference number: 3 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPICSFS*VKMAIF
Trigger: AAAAATGGCCATCTTGACCAAAGAAAAGCTACAGAT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTCAGACACTTTACACATaGATCCATGTCATAAGAACT +
Preference number: 3 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSQTLYT*IHVIRT
Trigger: AGTTCTTATGACATGGATCAATGTGTAAAGTGTCTG...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR TCA 72 bp GGTGCTGGACTACTTGTTGGTCTGTATTTAGCAGTATaGGAAAAGATCCTTCTTTATCCTCTTGCACAAAGA +
Preference number: 3 (lower is better)
Translates to: GAGLLVGLYLAV*EKILLYPLAQR
Trigger: TCTTTGTGCAAGAGGATAAAGAAGGATCTTTTCTCATACTGCTAAATACAGACCAACAAGTAGTCCAGCACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AATTCAGGAAGCCTCAGTGAATCACCTACTACCTATTaGGCAACAATTATCAACATGGCCATGTTCTATCCT +
Preference number: 3 (lower is better)
Translates to: NSGSLSESPTTY*ATIINMAMFYP
Trigger: AGGATAGAACATGGCCATGTTGATAATTGTTGCTCAATAGGTAGTAGGTGATTCACTGAGGCTTCCTGAATT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GATGGCCATTTTTACTGTATTAATGCTGTCAATCTATaGGCCTGGGAGAACTTTCCATCCTCTGAGATCATT +
Preference number: 3 (lower is better)
Translates to: DGHFYCINAVNL*AWENFPSSEII
Trigger: AATGATCTCAGAGGATGGAAAGTTCTCCCAGGCTCATAGATTGACAGCATTAATACAGTAAAAATGGCCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TTTGACCATGTGTCTACTTCTTGCATAAGCATCTCATaGAGTGAGTGGGCCACAGCATATATAGCATTGTAT +
Preference number: 3 (lower is better)
Translates to: FDHVSTSCISIS*SEWATAYIALY
Trigger: ATACAATGCTATATATGCTGTGGCCCACTCACTTCATGAGATGCTTATGCAAGAAGTAGACACATGGTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR CCA 72 bp TCCCTGCCAAAATTCCAACACAATTCTTCAAAGACATaGAAAGGGCAATTCTCAACTTCATCTGGACAAAGA +
Preference number: 3 (lower is better)
Translates to: SLPKFQHNSSKT*KGQFSTSSGQR
Trigger: TCTTTGTCCAGATGAAGTTGAGAATTGCCCTTTCCATGTCTTTGAAGAATTGTGTTGGAATTTTGGCAGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp TTTTCAGGTCTTTTAGGTGATCAAGAGATTGCTGGGTaGAAGAACTGGGTTCTGACAGTGCTAAATTACATT +
Preference number: 3 (lower is better)
Translates to: FSGLLGDQEIAG*KNWVLTVLNYI
Trigger: AATGTAATTTAGCACTGTCAGAACCCAGTTCTTCCACCCAGCAATCTCTTGATCACCTAAAAGACCTGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp GTAAAGCCTATCCACATAAATAGAAAATGTACCGCTTaGTCTTCTGTGTCCTGTAACAAGTGGAGGAAAATC +
Preference number: 3 (lower is better)
Translates to: VKPIHINRKCTA*SSVSCNKWRKI
Trigger: GATTTTCCTCCACTTGTTACAGGACACAGAAGACCAAGCGGTACATTTTCTATTTATGTGGATAGGCTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAATGTTACATACAGCTCTaGGAACAAAAGACTCAGATG +
Preference number: 3 (lower is better)
Translates to: ERSIAQALLLFSIIINSQCYIQL*EQKTQM
Trigger: CATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACA...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCGAGGCCACAATTACTTaGACACCTAAACCCCACAAA +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTEATIT*TPKPHK
Trigger: TTTGTGGGGTTTAGGTGTCAAAGTAATTGTGGCCTC...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCCTTAGAAACTCCATGTaGACACAAATGTTCTCTCAT +
Preference number: 3 (lower is better)
Translates to: CNKDTCSPKMIATVFIIALRNSM*TQMFSH
Trigger: ATGAGAGAACATTTGTGTCAACATGGAGTTTCTAAG...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTACTTGCATATGTAGCTaGGAATGGCCTTGTCAGACA +
Preference number: 3 (lower is better)
Translates to: KCNKDTCSPKMIATVFIITCICS*EWPCQT
Trigger: TGTCTGACAAGGCCATTCCAAGCTACATATGCAAGT...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TATAGTGATACCCATCACAAATTTTTATCTTCCCACGTGCTGGATTATCATGTTGAGATCGGAGTGTGCTaGAGCAAACTGTATTCATGT +
Preference number: 3 (lower is better)
Translates to: YSDTHHKFLSSHVLDYHVEIGVC*SKLYSC
Trigger: ACATGAATACAGTTTGCTCAAGCACACTCCGATCTC...AACATGATAATCCAGCACGTGGGAAGATAAAAATTTGTGATGGGTATCACTATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CAA 90 bp TATTCCTCCTTTCCCTATATAGCTTCTACTGCTTTTCAATACAACCACTTCCCATCCATGTTTGTCATGTaGGAAATCTCATTTTCTGGG +
Preference number: 3 (lower is better)
Translates to: YSSFPYIASTAFQYNHFPSMFVM*EISFSG
Trigger: CCCAGAAAATGAGATTTCCAACATGACAAACATGGA...TGGGAAGTGGTTGTATTGAAAAGCAGTAGAAGCTATATAGGGAAAGGAGGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR TCA 72 bp AGTGTTACATACAGCTCTTGGAACAAAAGACTCAGATaGAGGAGTAGTTCTCATGTACCTTTAATTCCTGGA +
Preference number: 3 (lower is better)
Translates to: SVTYSSWNKRLR*RSSSHVPLIPG
Trigger: TCCAGGAATTAAAGGTACATGAGAACTACTCCTTCATCTGAGTCTTTTGTTCCAAGAGCTGTATGTAACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GGGCAGGAAATCAATTTAATAGCTGAAGTCAGCCAGTaGGAACCAAAGAGAACAGTACAAAGAATCAACAAA +
Preference number: 3 (lower is better)
Translates to: GQEINLIAEVSQ*EPKRTVQRINK
Trigger: TTTGTTGATTCTTTGTACTGTTCTCTTTGGTTCTCACTGGCTGACTTCAGCTATTAAATTGATTTCCTGCCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GTCCAGAATCAGCTTGGATATGGTGAGTGTATAAGCTaGGATGAAAATTTGGAAATGAGTCTCACATGTGTT +
Preference number: 3 (lower is better)
Translates to: VQNQLGYGECIS*DENLEMSLTCV
Trigger: AACACATGTGAGACTCATTTCCAAATTTTCATCTCAGCTTATACACTCACCATATCCAAGCTGATTCTGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GCTTTTAGAGACTCTGTGGAGAAGTCTGTTGTAATCTaGAAGGTCTGTCTTCTTGTTTTACTTGGTGATTTC +
Preference number: 3 (lower is better)
Translates to: AFRDSVEKSVVI*KVCLLVLLGDF
Trigger: GAAATCACCAAGTAAAACAAGAAGACAGACCTTTCAGATTACAACAGACTTCTCCACAGAGTCTCTAAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TTGTCTTTGTCACCATGTTGTGTTTCCTGTATGCAGTaGAATGCTGGGTCCTGTTTATGTATCCATTTGTTA +
Preference number: 3 (lower is better)
Translates to: LSLSPCCVSCMQ*NAGSCLCIHLL
Trigger: TAACAAATGGATACATAAACAGGACCCAGCATTTCACTGCATACAGGAAACACAACATGGTGACAAAGACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp GGTGTGCAAGGCATACTACATATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCACTCTATCATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: GVQGILHIEGRI*SISVAHSIISL
Trigger: TAAAGAAATGATAGAGTGGGCTACAGATATTGATCAGATTCTACCCTCAATATGTAGTATGCCTTGCACACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 72 bp TCACTGTACCAATACCATACAATTTTTAATCACAATTaGTCTGTAGTACAGCTTGAGGTCAGGGATGGTGAT +
Preference number: 3 (lower is better)
Translates to: SLYQYHTIFNHN*SVVQLEVRDGD
Trigger: ATCACCATCCCTGACCTCAAGCTGTACTACAGAGCAATTGTGATTAAAAATTGTATGGTATTGGTACAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AGATGTGGAGAAACAGAGACATTCTTCCATTGTCAGTaGAATTGCATGCTGATCCAAACATTTTGGAAATCA +
Preference number: 3 (lower is better)
Translates to: RCGETETFFHCQ*NCMLIQTFWKS
Trigger: TGATTTCCAAAATGTTTGGATCAGCATGCAATTCCACTGACAATGGAAGAATGTCTCTGTTTCTCCACATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAACAATTCAGAAAGGAATaGTATTCCTTGGTCATCACT +
Preference number: 3 (lower is better)
Translates to: ERSIAQALLLFSIIINSQQFRKE*YSLVIT
Trigger: AGTGATGACCAAGGAATACAATTCCTTTCTGAATTG...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR-3UTR CAA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATGTTTGGTTATTGGCTTaGACTATGGGAGTATCTCTG +
Preference number: 3 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDVWLLA*TMGVSL
Trigger: CAGAGATACTCCCATAGTCAAAGCCAATAACCAAAC...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR TCA 72 bp GCCCACTCTATCATTTCTTTAGACATATATAGCTGTTaGCCACTTGGAAGATGCTCTGAAAATCTTCCTATT +
Preference number: 3 (lower is better)
Translates to: AHSIISLDIYSC*PLGRCSENLPI
Trigger: AATAGGAAGATTTTCAGAGCATCTTCCAAGTGGTCAACAGCTATATATGTCTAAAGAAATGATAGAGTGGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 72 bp TATCCTGTAGTAATTGCTTATTACCTGGATCAGAGTTaGACTGGAATATCATTTTTCCTGAACCTATTGCCA +
Preference number: 3 (lower is better)
Translates to: YPVVIAYYLDQS*TGISFFLNLLP
Trigger: TGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGGTAATAAGCAATTACTACAGGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp ATACCCAGAAGATTTGCCAAATGTAATAAGGACACATaGTCCCCTAAGATGATAGCCACCGTATTTATAATT +
Preference number: 3 (lower is better)
Translates to: IPRRFAKCNKDT*SPKMIATVFII
Trigger: AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp ATGATAATATTTATAGCCTGCACTCATGGAACAGAGTaGCTTCTCTCATCAAAAACAAAGATACCTGAGAAG +
Preference number: 3 (lower is better)
Translates to: MIIFIACTHGTE*LLSSKTKIPEK
Trigger: CTTCTCAGGTATCTTTGTTTTTGATGAGAGAAGCCACTCTGTTCCATGAGTGCAGGCTATAAATATTATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp TGCATAGCCAATGATAATATTTATAGCCTGCACTCATaGAACAGAGTGGCTTCTCTCATCAAAAACAAAGAT +
Preference number: 3 (lower is better)
Translates to: CIANDNIYSLHS*NRVASLIKNKD
Trigger: ATCTTTGTTTTTGATGAGAGAAGCCACTCTGTTCCATGAGTGCAGGCTATAAATATTATCATTGGCTATGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AGAAACTTCTGTAGCTGGGAAATAACCTCAACAAAGTaGCAGACAATGAAATTAACTCAAACAAATCACCAG +
Preference number: 3 (lower is better)
Translates to: RNFCSWEITSTK*QTMKLTQTNHQ
Trigger: CTGGTGATTTGTTTGAGTTAATTTCATTGTCTGCCACTTTGTTGAGGTTATTTCCCAGCTACAGAAGTTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp TTAGGCTACCTACACATAAATTGCAAATGGATAGCTTaGTCTTCATCTTGGTCCTTTCAAAATTTGAGCAAC +
Preference number: 3 (lower is better)
Translates to: LGYLHINCKWIA*SSSWSFQNLSN
Trigger: GTTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AGGTTGGAATTAGGCTACCTACACATAAATTGCAAATaGATAGCTTGGTCTTCATCTTGGTCCTTTCAAAAT +
Preference number: 3 (lower is better)
Translates to: RLELGYLHINCK*IAWSSSWSFQN
Trigger: ATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCTAATTCCAACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCACAAAGGTATCTCATCTaGAGAATTCCTATAAGAGAG +
Preference number: 3 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSQRYLI*RIPIRE
Trigger: CTCTCTTATAGGAATTCTCAAGATGAGATACCTTTG...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCTTATTGAATGTTCCTTaGCCCCATGTAAAACTCCAC +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTLLNVP*PHVKLH
Trigger: GTGGAGTTTTACATGGGGCAAAGGAACATTCAATAA...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGAAACAGTTCAATCAGTaGAATAGAATGGATGACCCA +
Preference number: 3 (lower is better)
Translates to: SCILLLMLASVDPNLFLKKQFNQ*NRMDDP
Trigger: TGGGTCATCCATTCTATTCAACTGATTGAACTGTTT...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGATGGTCAGGCAAAATATaGAAACACTTTCATAACTGC +
Preference number: 3 (lower is better)
Translates to: FSSILATIRQCIGPSKTRWSGKI*KHFHNC
Trigger: GCAGTTATGAAAGTGTTTCAATATTTTGCCTGACCA...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCATGGTCAGGCAAAATATaGAAACACTTTCATAACTGC +
Preference number: 3 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSWSGKI*KHFHNC
Trigger: GCAGTTATGAAAGTGTTTCAATATTTTGCCTGACCA...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTTTACCTGGATCAGAGTaGCACTGGAATATCATTTTT +
Preference number: 3 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGLPGSE*HWNIIF
Trigger: AAAAATGATATTCCAGTGCAACTCTGATCCAGGTAA...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGTTACCTGGATCAGAGTaGCACTGGAATATCATTTTT +
Preference number: 3 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLPGSE*HWNIIF
Trigger: AAAAATGATATTCCAGTGCAACTCTGATCCAGGTAA...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGATCTGTAGCTTTTCTTaGGTCAAGATGGCCATTTTT +
Preference number: 3 (lower is better)
Translates to: SCILLLMLASVDPNLFLKICSFS*VKMAIF
Trigger: AAAAATGGCCATCTTGACCAAAGAAAAGCTACAGAT...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCTTGTCAAAGATCAGTaGACAATAGTAGTATGGGTT +
Preference number: 3 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLVKDQ*TIVVWV
Trigger: AACCCATACTACTATTGTCAACTGATCTTTGACAAG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAGACAATGCTAAGAGTTaGGTTATTGGCTTTGACTAT +
Preference number: 3 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSDNAKS*VIGFDY
Trigger: ATAGTCAAAGCCAATAACCAAACTCTTAGCATTGTC...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATTTTCTTTCACTTATTTaGCTGCATCATTGGGCCTCA +
Preference number: 3 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDFLSLI*LHHWAS
Trigger: TGAGGCCCAATGATGCAGCAAAATAAGTGAAAGAAA...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCTTTTTCCTGAACCTATaGCCACTCTTTTCAATACAG +
Preference number: 3 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTFFLNL*PLFSIQ
Trigger: CTGTATTGAAAAGAGTGGCAATAGGTTCAGGAAAAA...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR-3UTR CAA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAGAATTGGTATTTTCCTaGATATCTGAGCCTGTTATG +
Preference number: 3 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEELVFS*ISEPVM
Trigger: CATAACAGGCTCAGATATCAAGGAAAATACCAATTC...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp AAGTACAATAATCATTTTATGAGGCCACAATTACTTTaGCACCTAAACCCCACAAACACCCAAGAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: KYNNHFMRPQLL*HLNPTNTQERN
Trigger: GTTTCTTTCTTGGGTGTTTGTGGGGTTTAGGTGTCAAAGTAATTGTGGCCTCATAAAATGATTATTGTACTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TGGAGAGATCCTAATATAGTCACTTCACAGCTCTTCTaGAAGTTCAAGAACTATAAGATACAAACATACCCA +
Preference number: 3 (lower is better)
Translates to: WRDPNIVTSQLF*KFKNYKIQTYP
Trigger: TGGGTATGTTTGTATCTTATAGTTCTTGAACTTTCAGAAGAGCTGTGAAGTGACTATATTAGGATCTCTCCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp ATTCATCTTCAGGTTTTTGTTCTAAGTTACAGCATCTaGCTTAACCTCCCTCTGGTTGAGTATACATTGAAT +
Preference number: 3 (lower is better)
Translates to: IHLQVFVLSYSI*LNLPLVEYTLN
Trigger: ATTCAATGTATACTCAACCAGAGGGAGGTTAAGTCAGATGCTGTAACTTAGAACAAAAACCTGAAGATGAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp ATAACTGCTAAGGAGTCAATAGTAGTAATTAAAAATTaGCTAAGCAAATACTGCCCAGGGCCAGATGATTTT +
Preference number: 3 (lower is better)
Translates to: ITAKESIVVIKN*LSKYCPGPDDF
Trigger: AAAATCATCTGGCCCTGGGCAGTATTTGCTTAGGCAATTTTTAATTACTACTATTGACTCCTTAGCAGTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR GCA 72 bp GGACCTCATTATAATAGTTCCTTATGTTTACCTTCATaGCTAAGTAACTTTCTGGTCATTGGAAATATCACC +
Preference number: 3 (lower is better)
Translates to: GPHYNSSLCLPS*LSNFLVIGNIT
Trigger: GGTGATATTTCCAATGACCAGAAAGTTACTTAGGCATGAAGGTAAACATAAGGAACTATTATAATGAGGTCC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp ATTTCTCCTTTCAATTCAGAAAGGAATTGTATTCCTTaGTCATCACTTGTAACAATCACTCCTATCCAGTTC +
Preference number: 3 (lower is better)
Translates to: ISPFNSERNCIP*SSLVTITPIQF
Trigger: GAACTGGATAGGAGTGATTGTTACAAGTGATGACCAAGGAATACAATTCCTTTCTGAATTGAAAGGAGAAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR TCA 72 bp TTACATCCAACACCCCCTTCTGTTAAGTGTTTGGAGTaGTCAGGAATTCAAGGCATAATAAAAGTTATATAT +
Preference number: 3 (lower is better)
Translates to: LHPTPPSVKCLE*SGIQGIIKVIY
Trigger: ATATATAACTTTTATTATGCCTTGAATTCCTGATCACTCCAAACACTTAACAGAAGGGGGTGTTGGATGTAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR TCA 72 bp TTGAGATATCCACAATGTGAGGGCATAATTTATGGGTaGAAATTTGTCTCCATAAACTATCACAACTTTTGC +
Preference number: 3 (lower is better)
Translates to: LRYPQCEGIIYG*KFVSINYHNFC
Trigger: GCAAAAGTTGTGATAGTTTATGGAGACAAATTTTCACCCATAAATTATGCCCTCACATTGTGGATATCTCAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR GCA 72 bp GATAATTCACTATGTACAGTTAGTGATGCTAGACAGTaGAAAGATTTAGGGCCATTTATTAGACAGTGTATA +
Preference number: 3 (lower is better)
Translates to: DNSLCTVSDARQ*KDLGPFIRQCI
Trigger: TATACACTGTCTAATAAATGGCCCTAAATCTTTGCACTGTCTAGCATCACTAACTGTACATAGTGAATTATC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR GCA 72 bp TCAATAGTAGTAATTAAAAATTGCCTAAGCAAATACTaGCCAGGGCCAGATGATTTTAGTGCAGAATTCTAT +
Preference number: 3 (lower is better)
Translates to: SIVVIKNCLSKY*PGPDDFSAEFY
Trigger: ATAGAATTCTGCACTAAAATCATCTGGCCCTGGGCAGTATTTGCTTAGGCAATTTTTAATTACTACTATTGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CCA 72 bp AGTTATAAAGATAGAATTTCACAGTTTCTAAGTGATTaGCCCTTAGTTTCTCTGCCTCATATGCCAAGATAT +
Preference number: 3 (lower is better)
Translates to: SYKDRISQFLSD*PLVSLPHMPRY
Trigger: ATATCTTGGCATATGAGGCAGAGAAACTAAGGGCCAATCACTTAGAAACTGTGAAATTCTATCTTTATAACT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CAA 72 bp CATGGGGCACCAGATGTGGGCCTGGGTACCAGAGGTTaGACAAAAAGATCTCTGTCCAGGCCTGGTGCGAGG +
Preference number: 4 (lower is better)
Translates to: HGAPDVGLGTRG*TKRSLSRPGAR
Trigger: CCTCGCACCAGGCCTGGACAGAGATCTTTTTGTCAAACCTCTGGTACCCAGGCCCACATCTGGTGCCCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGGATTTTCTGAGTCCTaGTGTGCAAGGCATACTACA +
Preference number: 4 (lower is better)
Translates to: LCPGLVRGFQQREASAGRGFSES*CARHTT
Trigger: TGTAGTATGCCTTGCACACCAGGACTCAGAAAATCC...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTCCTGAGGGGATTTTCTaGGTCCTGGTGTGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGPEGIF*VLVCKA
Trigger: TGCCTTGCACACCAGGACTCAGAAAATCCCCTCAGG...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGTATCCAACTTCTTGTaGTTCTCTCAGGAATTCTGG +
Preference number: 4 (lower is better)
Translates to: LCPGLVRGFQQREASAGRVSNFL*FSQEFW
Trigger: CCAGAATTCCTGAGAGAATCACAAGAAGTTGGATAC...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
CDS-3UTR CCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGTATGGTCTTCATTaGCATATTGATCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: LCPGLVRGFQQREASAGREYGLH*HIDLPD
Trigger: GTCTGGAAGATCAATATGCCAATGAAGACCATACTC...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR TCA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGATTCTTAAAATGCCTTaGGATATCCACAATGTGAGG +
Preference number: 4 (lower is better)
Translates to: LCPGLVRGFQQREASAGRILKMP*DIHNVR
Trigger: CCTCACATTGTGGATATCTCAAGGCATTTTAAGAAT...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCATATCCTTTCCTTCCTaGGGGGATTTTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLISFPS*GDFLSP
Trigger: AGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATAT...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp GCTGTTCTCCTGGAAGGGAGTCAATTTTGTCCCTGGTaGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTT +
Preference number: 4 (lower is better)
Translates to: AVLLEGSQFCPW*KVWRPPVSLVL
Trigger: AAGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTAAGCATCTCATGAAGTaGGTGGGCCACAGCATATAT +
Preference number: 4 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGKHLMK*VGHSIY
Trigger: ATATATGCTGTGGCCCACTCACTTCATGAGATGCTT...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTAAGCATCTCATGAAGTaGGTGGGCCACAGCATATAT +
Preference number: 4 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPKHLMK*VGHSIY
Trigger: ATATATGCTGTGGCCCACTCACTTCATGAGATGCTT...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTATATCCTTTCCTTCCTaGGGGGATTTTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGISFPS*GDFLSP
Trigger: AGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATAT...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTGTATTTGGGTGCCCCTaGCACAAGCAGCCACCTCAT +
Preference number: 4 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSVFGCP*HKQPPH
Trigger: ATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATAC...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CCA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCGGAAATCTCATTTTCTaGGCAGGGGATACAAACAAA +
Preference number: 4 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLGNLIF*AGDTNK
Trigger: TTTGTTTGTATCCCCTGCCCAGAAAATGAGATTTCC...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp ATGTGTTTGAGCTGTTCTCCTGGAAGGGAGTCAATTTaGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: MCLSCSPGRESI*SLVEGVETSCV
Trigger: GACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTCCCTTCCAGGAGAACAGCTCAAACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGTAGCCCCTTGCCCCACAAATATGGATACTTGAACTTTGACAAAGAGGCCAAACCTGAGGGGATTTTCTaGGTCCTGGTGTGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: CSPLPHKYGYLNFDKEAKPEGIF*VLVCKA
Trigger: TGCCTTGCACACCAGGACTCAGAAAATCCCCTCAGG...TTTGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTGGGGCAAGGGGCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp ATTCCACAGTTTAGGCTAGTGCCAGGACAGAGACGCTGGTGTCGGTGTGTTGGTTCTTCAGAAACCAGATaGCAGAGATCAAAGAGAACA +
Preference number: 4 (lower is better)
Translates to: IPQFRLVPGQRRWCRCVGSSETR*QRSKRT
Trigger: TGTTCTCTTTGATCTCTGTCATCTGGTTTCTGAAGA...ACCAACACACCGACACCAGCGTCTCTGTCCTGGCACTAGCCTAAACTGTGGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGTAGCTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTCTCAGGTTGCTGGTGTaGAAAAATAAAAGTACCAGT +
Preference number: 4 (lower is better)
Translates to: CSLEWPCQTSRGGEALVPLRLLV*KNKSTS
Trigger: ACTGGTACTTTTATTTTTTCACACCAGCAACCTGAG...AGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAGCTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAACTTCCCAGCATTATTTaGCCATGTGTCTACTTCTTG +
Preference number: 4 (lower is better)
Translates to: LGMALSDIKGRRGACSYELPSII*PCVYFL
Trigger: CAAGAAGTAGACACATGGTCAAATAATGCTGGGAAG...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GGACACATGCCTGTCTCCATTTGGTTATCCCTGGTGTTATCTTGCCCAGGTTCCATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GHMPVSIWLSLVLSCPGSIEGRI*SISVAH
Trigger: GTGGGCTACAGATATTGATCAGATTCTACCCTCAAT...GGAACCTGGGCAAGATAACACCAGGGATAACCAAATGGAGACAGGCATGTGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGGATGGTCTACAGAGTGATTTCTTCAGAAACCAGATaGCAGAGATCAAAGAGAACA +
Preference number: 4 (lower is better)
Translates to: GRGRQISEFEARMVYRVISSETR*QRSKRT
Trigger: TGTTCTCTTTGATCTCTGTCATCTGGTTTCTGAAGA...AATCACTCTGTAGACCATCCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTCAGTTCCATCTGAAATaGACAACTAAGGACACCATG +
Preference number: 4 (lower is better)
Translates to: ESILSLVEGVETSCVSGSQFHLK*TTKDTM
Trigger: CATGGTGTCCTTAGTTGTTCATTTCAGATGGAACTG...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCCCTGAGGGGATTTTCTaGGTCCTGGTGTGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: CNKDTCSPKMIATVFIIAPEGIF*VLVCKA
Trigger: TGCCTTGCACACCAGGACTCAGAAAATCCCCTCAGG...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR GCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTGGTAGCCACAGTGAATaGAATGGCAAATGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSGSHSE*NGKCGL
Trigger: CAGACCACATTTGCCATTGCATTCACTGTGGCTACC...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CCA 90 bp CTTGGAATGGCCTTGTCAGACATCAAGGGGAGGAGAGGCGCTTGTTCCTATGAAGGAAATCTCATTTTCTaGGCAGGGGATACAAACAAA +
Preference number: 4 (lower is better)
Translates to: LGMALSDIKGRRGACSYEGNLIF*AGDTNK
Trigger: TTTGTTTGTATCCCCTGCCCAGAAAATGAGATTTCC...TTCATAGGAACAAGCGCCTCTCCTCCCCTTGATGTCTGACAAGGCCATTCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGCAGGAATTCTGGACATaGACAGGAATGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKQEFWT*TGMVQV
Trigger: AACTTGGACCATTCCTGTTCATGTCCAGAATTCCTG...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GAGTCAATTTTGTCCCTGGTTGAAGGTGTGGAGACCTCCTGTGTCTCTGGTTCTCTATCCAGTTCCATCTaGAATGAACAACTAAGGACA +
Preference number: 4 (lower is better)
Translates to: ESILSLVEGVETSCVSGSLSSSI*NEQLRT
Trigger: TGTCCTTAGTTGTTCATTTCAGATGGAACTGGATAG...AGAACCAGAGACACAGGAGGTCTCCACACCTTCAACCAGGGACAAAATTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTTGCATAAGCATCTCATaGAGTGAGTGGGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: PGSELHWNIIFPEPIATLCISIS*SEWATA
Trigger: TGCTGTGGCCCACTCACTTCATGAGATGCTTATGCA...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGGGATTTTCTGAGTCCTaGTGTGCAAGGCATACTACA +
Preference number: 4 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKGFSES*CARHTT
Trigger: TGTAGTATGCCTTGCACACCAGGACTCAGAAAATCC...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CCCCTGCCTCCTTATGCCTCAGAGGAAAAATTAATTAATCCATCTGCTCCTCTACAGGAATTCTGGACATaGACAGGAATGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: PLPPYASEEKLINPSAPLQEFWT*TGMVQV
Trigger: AACTTGGACCATTCCTGTTCATGTCCAGAATTCCTG...TAGAGGAGCAGATGGATTAATTAATTTTTCCTCTGAGGCATAAGGAGGCAGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGTGCATAAGCATCTCATaGAGTGAGTGGGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: SSILATIRQCIGPSKTRQCISIS*SEWATA
Trigger: TGCTGTGGCCCACTCACTTCATGAGATGCTTATGCA...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GACATGATCAAATTTCTTCTGTCCCACGTACGTGGAAATTACCATCCACAGGGTATATCCTTTCCTTCCTaGGGGGATTTTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: DMIKFLLSHVRGNYHPQGISFPS*GDFLSP
Trigger: AGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATAT...ACCCTGTGGATGGTAATTTCCACGTACGTGGGACAGAAGAAATTTGATCATGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTTGTGGTAGACAGGGATaGAAGTCATCCAAACACTGC +
Preference number: 4 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSCGRQG*KSSKHC
Trigger: GCAGTGTTTGGATGACTTTCATCCCTGTCTACCACA...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR TCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATGGTTTCCTGAACTTGTaGAAAGAATTTGTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHGFLNL*KEFVCG
Trigger: ACCACAGACAAATTCTTTTCACAAGTTCAGGAAACC...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTTCTCCAAAAGCAACTaGGGTCACTCAAATGACAAA +
Preference number: 4 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHFSKSN*GHSNDK
Trigger: TTTGTCATTTGAGTGACCCCAGTTGCTTTTGGAGAA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp GACATGATCAAATTTCTTCTGTCCCACGTACGTGGAAATTACCATCCACAGGGTAGCATGTATCACTCATaGCCATTCCAAATGGTGTCC +
Preference number: 4 (lower is better)
Translates to: DMIKFLLSHVRGNYHPQGSMYHS*PFQMVS
Trigger: GGACACCATTTGGAATGGCCATGAGTGATACATGCT...ACCCTGTGGATGGTAATTTCCACGTACGTGGGACAGAAGAAATTTGATCATGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAAAGCATGTATCACTCATaGCCATTCCAAATGGTGTCC +
Preference number: 4 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKSMYHS*PFQMVS
Trigger: GGACACCATTTGGAATGGCCATGAGTGATACATGCT...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTGCCTGCTTCAAATTCTaGTTCATGTTGACTAGGTCT +
Preference number: 4 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSACFKF*FMLTRS
Trigger: AGACCTAGTCAACATGAACCAGAATTTGAAGCAGGC...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGGCCTGCTTCAAATTCTaGTTCATGTTGACTAGGTCT +
Preference number: 4 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKACFKF*FMLTRS
Trigger: AGACCTAGTCAACATGAACCAGAATTTGAAGCAGGC...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTTCCTACTGTGCTTTTAGAAAACCTAAAGGGACAATaGAAGCTTCCTGGCCAGAGATCCTCTCTAGTGCTG +
Preference number: 4 (lower is better)
Translates to: FPTVLLENLKGQ*KLPGQRSSLVL
Trigger: CAGCACTAGAGAGGATCTCTGGCCAGGAAGCTTCAATTGTCCCTTTAGGTTTTCTAAAAGCACAGTAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAACAGTTCCATCTGAAATaGACAACTAAGGACACCATG +
Preference number: 4 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKQFHLK*TTKDTM
Trigger: CATGGTGTCCTTAGTTGTTCATTTCAGATGGAACTG...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GACATGATCAAATTTCTTCTGTCCCACGTACGTGGAAATTACCATCCACAGGGTCAGTTCCATCTGAAATaGACAACTAAGGACACCATG +
Preference number: 4 (lower is better)
Translates to: DMIKFLLSHVRGNYHPQGQFHLK*TTKDTM
Trigger: CATGGTGTCCTTAGTTGTTCATTTCAGATGGAACTG...ACCCTGTGGATGGTAATTTCCACGTACGTGGGACAGAAGAAATTTGATCATGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GACCCACCAAAGAGTACACATGGAGGGAAAAATGCCTCCACTTGCATATGTAGCAAAGGTATCTCATCTTaGGAATTCTTGTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: DPPKSTHGGKNASTCICSKGISS*EFLSCW
Trigger: CCAACATGACAAGAATTCTCAAGATGAGATACCTTT...GCTACATATGCAAGTGGAGGCATTTTTCCCTCCATGTGTACTCTTTGGTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233336.2
CDS-3UTR GCA 90 bp GCCTCTTTGGAGGCAGTTTATGCTCAGTTTCATGTGTTTGAGCTGTTCTCCTGGCCCAGATTCTTAAAATaGCTTGAGATATCCACAATG +
Preference number: 4 (lower is better)
Translates to: ASLEAVYAQFHVFELFSWPRFLK*LEISTM
Trigger: CATTGTGGATATCTCAAGGCATTTTAAGAATCTGGG...CCAGGAGAACAGCTCAAACACATGAAACTGAGCATAAACTGCCTCCAAAGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TGTAGCCCCTTGCCCCACAAATATGGATACTTGAACTTTGACAAAGAGGCCAAAGCCTGCTTCAAATTCTaGTTCATGTTGACTAGGTCT +
Preference number: 4 (lower is better)
Translates to: CSPLPHKYGYLNFDKEAKACFKF*FMLTRS
Trigger: AGACCTAGTCAACATGAACCAGAATTTGAAGCAGGC...TTTGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTGGGGCAAGGGGCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATTCTTACTTGTCATGTTaGAAATCTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHSYLSC*KSHFLG
Trigger: GCCCAGAAAATGAGATTTCCAACATGACAAGTAAGA...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
3UTR CAA 72 bp CAGGCTGAGGTTGGAATTAGGCTACCTACACATAAATaGCAAATGGATAGCTTGGTCTTCATCTTGGTCCTT +
Preference number: 4 (lower is better)
Translates to: QAEVGIRLPTHK*QMDSLVFILVL
Trigger: AAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCTAATTCCAACCTCAGCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp AGCAGCCACCTCATTCTTCTTCCTGGAACAGTTATCTaGAATGCCAGTACTACAGTAATTGTCTTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: SSHLILLPGTVI*NASTTVIVLAK
Trigger: CTTGGCTAAGACAATTACTGTAGTACTGGCATTCAAGATAACTGTTCCAGGAAGAAGAATGAGGTGGCTGCT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp AGTTCCTTCCCAGCATTATTTGACCATGTGTCTACTTCTTGCATAAGCATCTCACAGGAATTCTGGACATaGACAGGAATGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: SSFPALFDHVSTSCISISQEFWT*TGMVQV
Trigger: AACTTGGACCATTCCTGTTCATGTCCAGAATTCCTG...TGAGATGCTTATGCAAGAAGTAGACACATGGTCAAATAATGCTGGGAAGGAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
CDS-3UTR TCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCATGCATAAGCATCTCATaGAGTGAGTGGGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSCISIS*SEWATA
Trigger: TGCTGTGGCCCACTCACTTCATGAGATGCTTATGCA...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CCCTTGCCCCACAAATATGGATACTTGAACTTTGACAAAGAGGCCAAAAACACAATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCAC +
Preference number: 4 (lower is better)
Translates to: PLPHKYGYLNFDKEAKNTIEGRI*SISVAH
Trigger: GTGGGCTACAGATATTGATCAGATTCTACCCTCAAT...TGTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTGGGGCAAGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR GCA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTCCCAGATTCTTAAAATaGCTTGAGATATCCACAATG +
Preference number: 4 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSPRFLK*LEISTM
Trigger: CATTGTGGATATCTCAAGGCATTTTAAGAATCTGGG...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAATTCCAACACAATGGATTTTCTGAGTCCTaGTGTGCAAGGCATACTACA +
Preference number: 4 (lower is better)
Translates to: CQKQSTDSMESLPKFQHNGFSES*CARHTT
Trigger: TGTAGTATGCCTTGCACACCAGGACTCAGAAAATCC...ATTGTGTTGGAATTTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TGGATAGCTTGGTCTTCATCTTGGTCCTTTCAAAATTaGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTA +
Preference number: 4 (lower is better)
Translates to: WIAWSSSWSFQN*SNIFCHLCALL
Trigger: TAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp CTAAGGACACCATGGCTAGTGGTAGAGATGTGTCCTTaGGTGATATCTGGTAAAGATGAGGAAATTCTTCAT +
Preference number: 4 (lower is better)
Translates to: LRTPWLVVEMCP*VISGKDEEILH
Trigger: ATGAAGAATTTCCTCATCTTTACCAGATATCACCAAAGGACACATCTCTACCACTAGCCATGGTGTCCTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
CDS-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTCTATCCAGTTCCATCTaGAATGAACAACTAAGGACA +
Preference number: 4 (lower is better)
Translates to: PGSELHWNIIFPEPIATLLSSSI*NEQLRT
Trigger: TGTCCTTAGTTGTTCATTTCAGATGGAACTGGATAG...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTAATTCTTAAAATGCCTTaGGATATCCACAATGTGAGG +
Preference number: 4 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLILKMP*DIHNVR
Trigger: CCTCACATTGTGGATATCTCAAGGCATTTTAAGAAT...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CCTGGATCAGAGTTGCACTGGAATATCATTTTTCCTGAACCTATTGCCACTCTTCTCAGGTTGCTGGTGTaGAAAAATAAAAGTACCAGT +
Preference number: 4 (lower is better)
Translates to: PGSELHWNIIFPEPIATLLRLLV*KNKSTS
Trigger: ACTGGTACTTTTATTTTTTCACACCAGCAACCTGAG...AAGAGTGGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CAAATGAAGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTCGATGGTGGCAATaGACATCTAAAATATGTCCA +
Preference number: 4 (lower is better)
Translates to: QMKYLSLSLSLSLSLSLSIRWWQ*TSKICP
Trigger: TGGACATATTTTAGATGTTCATTGCCACCATCGAAT...AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTTCATTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCCTTCCCAGCATTATTTaGCCATGTGTCTACTTCTTG +
Preference number: 4 (lower is better)
Translates to: CNKDTCSPKMIATVFIIALPSII*PCVYFL
Trigger: CAAGAAGTAGACACATGGTCAAATAATGCTGGGAAG...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR GCA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAACCCAGATTCTTAAAATaGCTTGAGATATCCACAATG +
Preference number: 4 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKPRFLK*LEISTM
Trigger: CATTGTGGATATCTCAAGGCATTTTAAGAATCTGGG...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR GCA 90 bp CAAATGAAGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTATACTGTGTAGCCTaGTTCAAATTCTGGTTCATG +
Preference number: 4 (lower is better)
Translates to: QMKYLSLSLSLSLSLSLSLYCVA*FKFWFM
Trigger: CATGAACCAGAATTTGAAGCAGGCTACACAGTATAA...AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTTCATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTCTCCAAAAGCAACTaGGGTCACTCAAATGACAAA +
Preference number: 4 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHFSKSN*GHSNDK
Trigger: TTTGTCATTTGAGTGACCCCAGTTGCTTTTGGAGAA...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CCCTTGCCCCACAAATATGGATACTTGAACTTTGACAAAGAGGCCAAAAACACATTCTCCAAAAGCAACTaGGGTCACTCAAATGACAAA +
Preference number: 4 (lower is better)
Translates to: PLPHKYGYLNFDKEAKNTFSKSN*GHSNDK
Trigger: TTTGTCATTTGAGTGACCCCAGTTGCTTTTGGAGAA...TGTGTTTTTGGCCTCTTTGTCAAAGTTCAAGTATCCATATTTGTGGGGCAAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAAATTCCAACACAATTCTTCAGAAACCAGATaGCAGAGATCAAAGAGAACA +
Preference number: 4 (lower is better)
Translates to: CQKQSTDSMESLPKFQHNSSETR*QRSKRT
Trigger: TGTTCTCTTTGATCTCTGTCATCTGGTTTCTGAAGA...ATTGTGTTGGAATTTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCAGGAATTCTGGACATaGACAGGAATGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: SCILLLMLASVDPNLFLKQEFWT*TGMVQV
Trigger: AACTTGGACCATTCCTGTTCATGTCCAGAATTCCTG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTCACTACTGTAGTTTaGAGGGTATACTGTTTGGAT +
Preference number: 4 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHFTTVV*RVYCLD
Trigger: ATCCAAACAGTATACCCTTCAAACTACAGTAGTGAA...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAACTTCCCAGCATTATTTaGCCATGTGTCTACTTCTTG +
Preference number: 4 (lower is better)
Translates to: ERSIAQALLLFSIIINSQLPSII*PCVYFL
Trigger: CAAGAAGTAGACACATGGTCAAATAATGCTGGGAAG...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAATTGAGGGTAGAATCTaGTCAATATCTGTAGCCCAC +
Preference number: 4 (lower is better)
Translates to: ERSIAQALLLFSIIINSQIEGRI*SISVAH
Trigger: GTGGGCTACAGATATTGATCAGATTCTACCCTCAAT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTGCCTTCTCCAAAAGCAACTaGGGTCACTCAAATGACAAA +
Preference number: 4 (lower is better)
Translates to: CNKDTCSPKMIATVFIIAFSKSN*GHSNDK
Trigger: TTTGTCATTTGAGTGACCCCAGTTGCTTTTGGAGAA...GGCAATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAAGCATGTATCACTCATaGCCATTCCAAATGGTGTCC +
Preference number: 4 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSSMYHS*PFQMVS
Trigger: GGACACCATTTGGAATGGCCATGAGTGATACATGCT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTTCTCTGCCTCATATGCCAAGATATTTTCCAAGCCTaGATGGTGAGGCTGTTTTACTTAAGGTGGAGAAAA +
Preference number: 4 (lower is better)
Translates to: FLCLICQDIFQA*MVRLFYLRWRK
Trigger: TTTTCTCCACCTTAAGTAAAACAGCCTCACCATCAAGGCTTGGAAAATATCTTGGCATATGAGGCAGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
3UTR CAA 72 bp ACATGGTATTGGTACAGTGACAAACAGTTCAATCAGTaGAATAGAATGGATGACCCAGAAGTAAACCTACCC +
Preference number: 4 (lower is better)
Translates to: TWYWYSDKQFNQ*NRMDDPEVNLP
Trigger: GGGTAGGTTTACTTCTGGGTCATCCATTCTATTCAACTGATTGAACTGTTTGTCACTGTACCAATACCATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTGGAGAAGATGTGGAGAAACAGAGACATTCTTCCATaGTCAGTGGAATTGCATGCTGATCCAAACATTTTG +
Preference number: 4 (lower is better)
Translates to: LEKMWRNRDILP*SVELHADPNIL
Trigger: CAAAATGTTTGGATCAGCATGCAATTCCACTGACAATGGAAGAATGTCTCTGTTTCTCCACATCTTCTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TGGAGGAAAATCTATGCATATCTTTGTGACCTGCCATaGGCTTTCTTTCACTTATTTTGCTGCATCATTGGG +
Preference number: 4 (lower is better)
Translates to: WRKIYAYLCDLP*AFFHLFCCIIG
Trigger: CCCAATGATGCAGCAAAATAAGTGAAAGAAAGCCAATGGCAGGTCACAAAGATATGCATAGATTTTCCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAAAAGCATCTCATGAAGTaGGTGGGCCACAGCATATAT +
Preference number: 4 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQEKHLMK*VGHSIY
Trigger: ATATATGCTGTGGCCCACTCACTTCATGAGATGCTT...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp GAGAGATCCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATAGGAATTGTATTCCTTaGTCATCACTTGTAACAATC +
Preference number: 4 (lower is better)
Translates to: ERSQMSFNRGMDTENVVHRNCIP*SSLVTI
Trigger: GATTGTTACAAGTGATGACCAAGGAATACAATTCCT...ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGATCTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp CTATCCTGTAGTAATTGCTTATTACCTGGATCAGAGTaGCACTGGAATATCATTTTTCCTGAACCTATTGCC +
Preference number: 4 (lower is better)
Translates to: LSCSNCLLPGSE*HWNIIFPEPIA
Trigger: GGCAATAGGTTCAGGAAAAATGATATTCCAGTGCAACTCTGATCCAGGTAATAAGCAATTACTACAGGATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTTGTTGCAAACAATGATGATGTGTCCATGTACCATTaGTACATCAGCATCAACAAATGGAGGAGAAGTTCC +
Preference number: 4 (lower is better)
Translates to: FVANNDDVSMYH*YISINKWRRSS
Trigger: GGAACTTCTCCTCCATTTGTTGATGCTGATGTACAAATGGTACATGGACACATCATCATTGTTTGCAACAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207880.3
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCTCAGGTTGCTGGTGTaGAAAAATAAAAGTACCAGT +
Preference number: 4 (lower is better)
Translates to: SCILLLMLASVDPNLFLKLRLLV*KNKSTS
Trigger: ACTGGTACTTTTATTTTTTCACACCAGCAACCTGAG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTATACTGTGTAGCCTGCTTCAAATTCTGGTTCATGTaGACTAGGTCTCCAGCAGGATTTACAAATTTTAAG +
Preference number: 4 (lower is better)
Translates to: LYCVACFKFWFM*TRSPAGFTNFK
Trigger: CTTAAAATTTGTAAATCCTGCTGGAGACCTAGTCAACATGAACCAGAATTTGAAGCAGGCTACACAGTATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
3UTR CAA 72 bp TTCATTGGCATATTGATCTTCCAGACACTTTACACATaGATCCATGTCATAAGAACTGATAGGCTGTCTGTA +
Preference number: 4 (lower is better)
Translates to: FIGILIFQTLYT*IHVIRTDRLSV
Trigger: TACAGACAGCCTATCAGTTCTTATGACATGGATCAATGTGTAAAGTGTCTGGAAGATCAATATGCCAATGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TATAGTGATACCCATCACAAATTTTTATCTTCCCACGTGCTGGATTATCATGTTTCTTCAGAAACCAGATaGCAGAGATCAAAGAGAACA +
Preference number: 4 (lower is better)
Translates to: YSDTHHKFLSSHVLDYHVSSETR*QRSKRT
Trigger: TGTTCTCTTTGATCTCTGTCATCTGGTTTCTGAAGA...AACATGATAATCCAGCACGTGGGAAGATAAAAATTTGTGATGGGTATCACTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TATAGTGATACCCATCACAAATTTTTATCTTCCCACGTGCTGGATTATCATGTTCTATCCAGTTCCATCTaGAATGAACAACTAAGGACA +
Preference number: 4 (lower is better)
Translates to: YSDTHHKFLSSHVLDYHVLSSSI*NEQLRT
Trigger: TGTCCTTAGTTGTTCATTTCAGATGGAACTGGATAG...AACATGATAATCCAGCACGTGGGAAGATAAAAATTTGTGATGGGTATCACTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171213.3
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTATTCTTAAAATGCCTTaGGATATCCACAATGTGAGG +
Preference number: 4 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGILKMP*DIHNVR
Trigger: CCTCACATTGTGGATATCTCAAGGCATTTTAAGAAT...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTTTCACTACTGTAGTTTaGAGGGTATACTGTTTGGAT +
Preference number: 4 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGFTTVV*RVYCLD
Trigger: ATCCAAACAGTATACCCTTCAAACTACAGTAGTGAA...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGATTCACTACTGTAGTTTaGAGGGTATACTGTTTGGAT +
Preference number: 4 (lower is better)
Translates to: FSSILATIRQCIGPSKTRFTTVV*RVYCLD
Trigger: ATCCAAACAGTATACCCTTCAAACTACAGTAGTGAA...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp TCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAATCACATATTCGATGGTGGCAATaGACATCTAAAATATGTCCA +
Preference number: 4 (lower is better)
Translates to: SIAQALLLFSIIINSQSHIRWWQ*TSKICP
Trigger: TGGACATATTTTAGATGTTCATTGCCACCATCGAAT...ATGTGATTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR TCA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAATTCGATGGTGGCAATaGACATCTAAAATATGTCCA +
Preference number: 4 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSIRWWQ*TSKICP
Trigger: TGGACATATTTTAGATGTTCATTGCCACCATCGAAT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TTATCATCTCTTCTATTACCTGACAATTACAGAGGTGGATATTTACAACCAACCGGAAATCTCATTTTCTaGGCAGGGGATACAAACAAA +
Preference number: 4 (lower is better)
Translates to: LSSLLLPDNYRGGYLQPTGNLIF*AGDTNK
Trigger: TTTGTTTGTATCCCCTGCCCAGAAAATGAGATTTCC...GGTTGGTTGTAAATATCCACCTCTGTAATTGTCAGGTAATAGAAGAGATGATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CCA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGAGAATTCTTGTCATGTTaGAAATCTCATTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: FSSILATIRQCIGPSKTREFLSC*KSHFLG
Trigger: GCCCAGAAAATGAGATTTCCAACATGACAAGAATTC...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000233336.2
CDS-3UTR TCA 90 bp TTTTTATATTCTTTCTGCCTCCTTTTCAGCAGTCATCACTTTACCTTACAGGAACTGGGGTCACTCAAATaGCAAAACATAAGTTTAATC +
Preference number: 4 (lower is better)
Translates to: FLYSFCLLFSSHHFTLQELGSLK*QNISLI
Trigger: GATTAAACTTATGTTTTGTCATTTGAGTGACCCCAG...TTCCTGTAAGGTAAAGTGATGACTGCTGAAAAGGAGGCAGAAAGAATATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR GCA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTTTATACTGTGTAGCCTaGTTCAAATTCTGGTTCATG +
Preference number: 4 (lower is better)
Translates to: KCNKDTCSPKMIATVFIILYCVA*FKFWFM
Trigger: CATGAACCAGAATTTGAAGCAGGCTACACAGTATAA...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp ATTAGGCTACCTACACATAAATTGCAAATGGATAGCTaGGTCTTCATCTTGGTCCTTTCAAAATTTGAGCAA +
Preference number: 4 (lower is better)
Translates to: IRLPTHKLQMDS*VFILVLSKFEQ
Trigger: TTGCTCAAATTTTGAAAGGACCAAGATGAAGACCAAGCTATCCATTTGCAATTTATGTGTAGGTAGCCTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
3UTR CAA 72 bp TTCATTGGCATATTGATCTTCCAGACACTTTACACATaGATCCATGTTTGTCATGTTGGAAATCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: FIGILIFQTLYT*IHVCHVGNLIF
Trigger: GAAAATGAGATTTCCAACATGACAAACATGGATCAATGTGTAAAGTGTCTGGAAGATCAATATGCCAATGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
CDS-3UTR CCA 90 bp TTAAATTTTCTAAGTAGACTGGCAATGGCTTATGCCCTAAGATCAACAACTGATTTCAGTTTTAGCATGTaGTTTCCTGAACTTGTGAAA +
Preference number: 4 (lower is better)
Translates to: LNFLSRLAMAYALRSTTDFSFSM*FPELVK
Trigger: TTTCACAAGTTCAGGAAACCACATGCTAAAACTGAA...ATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTACTTAGAAAATTTAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CAA 90 bp CTCTGTCCAGGCCTGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGATTCACTACTGTAGTTaGAAGGGTATACTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: LCPGLVRGFQQREASAGRIHYCS*KGILFG
Trigger: TCCAAACAGTATACCCTTCAAACTACAGTAGTGAAT...CCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCAGGCCTGGACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TGGTGCGAGGGTTCCAGCAAAGGGAAGCAAGTGCAGGCAGGGAGACAAAGTCTCGACAATGCTAAGAGTTaGGTTATTGGCTTTGACTAT +
Preference number: 5 (lower is better)
Translates to: WCEGSSKGKQVQAGRQSLDNAKS*VIGFDY
Trigger: ATAGTCAAAGCCAATAACCAAACTCTTAGCATTGTC...GAGACTTTGTCTCCCTGCCTGCACTTGCTTCCCTTTGCTGGAACCCTCGCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CAA 90 bp CTGTCCCACGTACGTGGAAATTACCATCCACAGGGTCCCACCAGGGTTCAAGACATTCACTACTGTAGTTaGAAGGGTATACTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: LSHVRGNYHPQGPTRVQDIHYCS*KGILFG
Trigger: TCCAAACAGTATACCCTTCAAACTACAGTAGTGAAT...GTCTTGAACCCTGGTGGGACCCTGTGGATGGTAATTTCCACGTACGTGGGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTGTTTGGTTATTGGCTTaGACTATGGGAGTATCTCTG +
Preference number: 5 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSVWLLA*TMGVSL
Trigger: CAGAGATACTCCCATAGTCAAAGCCAATAACCAAAC...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CAA 90 bp CAAATGAAGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATAGCTGTTGACCACTaGGAAGATGCTCTGAAAATC +
Preference number: 5 (lower is better)
Translates to: QMKYLSLSLSLSLSLSLSIAVDH*EDALKI
Trigger: GATTTTCAGAGCATCTTCCAAGTGGTCAACAGCTAT...AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTTCATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp CTGAACATTGTGTCCCCAATGGAGGATCTAGAGAAAGGATTGAAGGAGCTGAAGTCCATGTTTGTCATGTaGGAAATCTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: LNIVSPMEDLEKGLKELKSMFVM*EISFSG
Trigger: CCCAGAAAATGAGATTTCCAACATGACAAACATGGA...CTTCAGCTCCTTCAATCCTTTCTCTAGATCCTCCATTGGGGACACAATGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CAA 90 bp CTTGATGACCTTCTGTGTACCTGTTTGGGGCAGACCTCATGTGTTCCTTTCCATCAGACACTTTACACATaGATCCATGTTTGTCATGTT +
Preference number: 5 (lower is better)
Translates to: LDDLLCTCLGQTSCVPFHQTLYT*IHVCHV
Trigger: AACATGACAAACATGGATCAATGTGTAAAGTGTCTG...ATGGAAAGGAACACATGAGGTCTGCCCCAAACAGGTACACAGAAGGTCATCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS CCA 90 bp CCAACTTCTTGTGATTCTCTCAGGAATTCTGGACATGAACAGGAATaGTCCAAGTTTTGTAGATACTGCCCATATAGGAGCTGTAAGTAC +
Preference number: 5 (lower is better)
Translates to: PTSCDSLRNSGHEQE*SKFCRYCPYRSCKY
Trigger: GTACTTACAGCTCCTATATGGGCAGTATCTACAAAACTTGGACCATTCCTGTTCATGTCCAGAATTCCTGAGAGAATCACAAGAAGTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207880.3
CDS-3UTR CAA 90 bp TTTGAACAGATAGCACATGGTGGAGCAGTATTCAAGGGGAGGCTGTCTTTCTCTAGAATTCTTGTCATGTaGGAAATCTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: FEQIAHGGAVFKGRLSFSRILVM*EISFSG
Trigger: CCCAGAAAATGAGATTTCCAACATGACAAGAATTCT...AGAGAAAGACAGCCTCCCCTTGAATACTGCTCCACCATGTGCTATCTGTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233336.2
CDS-3UTR CAA 90 bp GGCGGTCTGCCAGTTCTTAAATTTGTCAGAAGGCTTAGATTTTTGGACTTCTCTTTGGGTGTCACCTTCTaGTCTATATTCCAACTGAAA +
Preference number: 5 (lower is better)
Translates to: GGLPVLKFVRRLRFLDFSLGVTF*SIFQLK
Trigger: TTTCAGTTGGAATATAGACAAGAAGGTGACACCCAA...AGAGAAGTCCAAAAATCTAAGCCTTCTGACAAATTTAAGAACTGGCAGACCGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp AAAGTGGCCATTGTGCCAAAAGCAATCTACAGATTCAATGGAGTCCCTGCCAAACAATTCAGAAAGGAATaGTATTCCTTGGTCATCACT +
Preference number: 5 (lower is better)
Translates to: KVAIVPKAIYRFNGVPAKQFRKE*YSLVIT
Trigger: AGTGATGACCAAGGAATACAATTCCTTTCTGAATTG...TTTGGCAGGGACTCCATTGAATCTGTAGATTGCTTTTGGCACAATGGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp AATATGTACCAATCAGAAATCTCAGAGCCCCCATGGACAAAAGGACCCACCAAAATTCACTACTGTAGTTaGAAGGGTATACTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: NMYQSEISEPPWTKGPTKIHYCS*KGILFG
Trigger: TCCAAACAGTATACCCTTCAAACTACAGTAGTGAAT...TTTGGTGGGTCCTTTTGTCCATGGGGGCTCTGAGATTTCTGATTGGTACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAGATAGCTGTTGACCACTaGGAAGATGCTCTGAAAATC +
Preference number: 5 (lower is better)
Translates to: SSILATIRQCIGPSKTRQIAVDH*EDALKI
Trigger: GATTTTCAGAGCATCTTCCAAGTGGTCAACAGCTAT...CTGTCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp CCGGGTATATACCCAGAAGATTTGCCAAATGTAATAAGGACACATGCTCCCCTACAAAGGTATCTCATCTaGAGAATTCTTGTCATGTTG +
Preference number: 5 (lower is better)
Translates to: PGIYPEDLPNVIRTHAPLQRYLI*RILVML
Trigger: CAACATGACAAGAATTCTCAAGATGAGATACCTTTG...TAGGGGAGCATGTGTCCTTATTACATTTGGCAAATCTTCTGGGTATATACCCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233336.2
CDS-3UTR CAA 90 bp GAACGTTCCATTGCACAAGCACTTCTCCTCTTTTCTATCATTATCAACTCACAAATAGCTGTTGACCACTaGGAAGATGCTCTGAAAATC +
Preference number: 5 (lower is better)
Translates to: ERSIAQALLLFSIIINSQIAVDH*EDALKI
Trigger: GATTTTCAGAGCATCTTCCAAGTGGTCAACAGCTAT...TTGTGAGTTGATAATGATAGAAAAGAGGAGAAGTGCTTGTGCAATGGAACGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp AATTTGAGCAACATCTTTTGCCATCTTTGTGCCCTGCTATTGGATTGCTTTCCCATCTTACTTGTCATGTaGGAAATCTCATTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: NLSNIFCHLCALLLDCFPILLVM*EISFSG
Trigger: CCCAGAAAATGAGATTTCCAACATGACAAGTAAGAT...GGGAAAGCAATCCAATAGCAGGGCACAAAGATGGCAAAAGATGTTGCTCAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TGCTTCATGTCCTTCAGTCAAAGTCTGCAAATGCATTATTTTTATCCAAGTGGTTTGGGTGTCACCTTCTaGTCTATATTCCAACTGAAA +
Preference number: 5 (lower is better)
Translates to: CFMSFSQSLQMHYFYPSGLGVTF*SIFQLK
Trigger: TTTCAGTTGGAATATAGACAAGAAGGTGACACCCAA...ACCACTTGGATAAAAATAATGCATTTGCAGACTTTGACTGAAGGACATGAAGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp CTTTATATTGTTGTGACTATTGTGAAAGGTGGTTTTTCCCTAATTCCCCTCTCAAATAGCAACAACTTTTaGGAGACAGAGAGTATGGTC +
Preference number: 5 (lower is better)
Translates to: LYIVVTIVKGGFSLIPLSNSNNF*ETESMV
Trigger: GACCATACTCTCTGTCTCCAAAAAGTTGTTGCTATT...TGAGAGGGGAATTAGGGAAAAACCACCTTTCACAATAGTCACAACAATATAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS-3UTR CAA 90 bp AAATGTAATAAGGACACATGCTCCCCTAAGATGATAGCCACCGTATTTATAATTTTGGGTGTCACCTTCTaGTCTATATTCCAACTGAAA +
Preference number: 5 (lower is better)
Translates to: KCNKDTCSPKMIATVFIILGVTF*SIFQLK
Trigger: TTTCAGTTGGAATATAGACAAGAAGGTGACACCCAA...AATTATAAATACGGTGGCTATCATCTTAGGGGAGCATGTGTCCTTATTACATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TTTTCGTCAATCTTAGCTACAATTAGGCAATGCATAGGGCCATCTAAAACAAGACAATTCAGAAAGGAATaGTATTCCTTGGTCATCACT +
Preference number: 5 (lower is better)
Translates to: FSSILATIRQCIGPSKTRQFRKE*YSLVIT
Trigger: AGTGATGACCAAGGAATACAATTCCTTTCTGAATTG...TCTTGTTTTAGATGGCCCTATGCATTGCCTAATTGTAGCTAAGATTGACGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS-3UTR CAA 90 bp TCTTGTATTCTGCTGTTGATGCTTGCATCTGTAGATCCTAATCTATTCCTTAAGCACATTGATCCATGTTaGTCATGTTGGAAATCTCAT +
Preference number: 5 (lower is better)
Translates to: SCILLLMLASVDPNLFLKHIDPC*SCWKSH
Trigger: ATGAGATTTCCAACATGACAAACATGGATCAATGTG...CTTAAGGAATAGATTAGGATCTACAGATGCAAGCATCAACAGCAGAATACAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171213.3
CDS CCA 72 bp ACAGTAAAGCTCAGGAATTCTGGACATGAACAGGAATaGTCCAAGTTTTGTAGATACTGCCCATATAGGAGC +
Preference number: 6 (lower is better)
Translates to: TVKLRNSGHEQE*SKFCRYCPYRS
Trigger: GCTCCTATATGGGCAGTATCTACAAAACTTGGACCATTCCTGTTCATGTCCAGAATTCCTGAGCTTTACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171213.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS TCA 72 bp TGGTCTTGGGTGTCACCTTCTTGTCTATATTCCAACTaGAATAATCATTCTTCACATAACCTTGCTTTGTGG +
Preference number: 6 (lower is better)
Translates to: WSWVSPSCLYSN*NNHSSHNLALW
Trigger: CCACAAAGCAAGGTTATGTGAAGAATGATTATTTCAGTTGGAATATAGACAAGAAGGTGACACCCAAGACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2
CDS CAA 72 bp CTCCCATTACATTCAATATTGACTAGCAGAGAAATGTaGGGCAAAATATGGCAGTTCTTATTTACTTCTTCC +
Preference number: 6 (lower is better)
Translates to: LPLHSILTSREM*GKIWQFLFTSS
Trigger: GGAAGAAGTAAATAAGAACTGCCATATTTTGCCCAACATTTCTCTGCTAGTCAATATTGAATGTAATGGGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000171213.3
ENSMUST00000207880.3
ENSMUST00000233336.2
ENSMUST00000233859.2