RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R65 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066372

Ensembl transcript IDs: ENSMUST00000044583.10, ENSMUST00000232823.2, ENSMUST00000233469.2

Found 358 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGTGTATGAATAGATCTGTCTGGGTGGTAAGGTTGAGTGTGTCGTaGGAGGGGACTGCAGGTTGGGGAATGTGTACATTGGGCCCTGAC +
Preference number: 1 (lower is better)
Translates to: ECMNRSVWVVRLSVS*EGTAGWGMCTLGPD
Trigger: GTCAGGGCCCAATGTACACATTCCCCAACCTGCAGTCCCCTCCCACGACACACTCAACCTTACCACCCAGACAGATCTATTCATACACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp TTTCTGGGAGGCAGGCAGATCTATGAGGTCCCAGGTAAGGCATGCTaGTCTACCATGGGTGCAGGTGGAGGTGCCTCACTGATAAATCTT +
Preference number: 1 (lower is better)
Translates to: FLGGRQIYEVPGKAC*STMGAGGGASLINL
Trigger: AAGATTTATCAGTGAGGCACCTCCACCTGCACCCATGGTAGATCAGCATGCCTTACCTGGGACCTCATAGATCTGCCTGCCTCCCAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 90 bp TATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTaGGAGGCAGGCAGATCTATGAGGTCCCAGGTAAGGCATGCTGAT +
Preference number: 1 (lower is better)
Translates to: YWSWGLTHVPSYQSF*EAGRSMRSQVRHAD
Trigger: ATCAGCATGCCTTACCTGGGACCTCATAGATCTGCCTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 90 bp TCAGTCTGCCACTGGTGCAGATGGAGATGTGGACTGGAAGTATCATaGGGCTCTGGCAGGGCAGCACTGATTCTACATTTTCTGGACTTT +
Preference number: 1 (lower is better)
Translates to: SVCHWCRWRCGLEVS*GSGRAALILHFLDF
Trigger: AAAGTCCAGAAAATGTAGAATCAGTGCTGCCCTGCCAGAGCCCCATGATACTTCCAGTCCACATCTCCATCTGCACCAGTGGCAGACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp GTCGTGGGAGGGGACTGCAGGTTGGGGAATGTGTACATTGGGCCCTaGCAGAAGTCTATAGATTGGTATGTCCAGTTACAGAGAATATCT +
Preference number: 1 (lower is better)
Translates to: VVGGDCRLGNVYIGP*QKSIDWYVQLQRIS
Trigger: AGATATTCTCTGTAACTGGACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTGCAGTCCCCTCCCACGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp TGTATGGTTGCAGAAGGCACCTGCACACTGCCAGTCTTCTCTAGTTaGGCAGTAGTGAACTCAATAGCTGGCATATTCCAGTCCCATTGG +
Preference number: 1 (lower is better)
Translates to: CMVAEGTCTLPVFSS*AVVNSIAGIFQSHW
Trigger: CCAATGGGACTGGAATATGCCAGCTATTGAGTTCACTACTGCTCAACTAGAGAAGACTGGCAGTGTGCAGGTGCCTTCTGCAACCATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp AGCTTCTTGGTTCTGGTTAGTGAAGATCCCGGTTGGTGGCTCCAGTaGCAGCAAAATATCAAGCAGTGCGCACTTGCTAGTGTTTCTGAA +
Preference number: 1 (lower is better)
Translates to: SFLVLVSEDPGWWLQ*QQNIKQCALASVSE
Trigger: TTCAGAAACACTAGCAAGTGCGCACTGCTTGATATTTTGCTGCCACTGGAGCCACCAACCGGGATCTTCACTAACCAGAACCAAGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 90 bp CCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGATGAATTTTaGGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATG +
Preference number: 1 (lower is better)
Translates to: PLLEQSSLEIGRDEF*GSRHVSLPLVQMEM
Trigger: CATCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp ACTCATATCAGCTGGTGCATGCTATCTATTTGGTGGTCCAGTGTTTaGGAGATATCAGAGGTCCACATTGAGACTGCTGGTACTCAGGAA +
Preference number: 1 (lower is better)
Translates to: THISWCMLSIWWSSV*EISEVHIETAGTQE
Trigger: TTCCTGAGTACCAGCAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATAGCATGCACCAGCTGATATGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 90 bp CACCCAGAAGTCCTCTACTATTATGTACTCATATCAGCTGGTGCATaGTATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCC +
Preference number: 1 (lower is better)
Translates to: HPEVLYYYVLISAGA*YLFGGPVFERYQRS
Trigger: GGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATAGCATGCACCAGCTGATATGAGTACATAATAGTAGAGGACTTCTGGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 90 bp CTTCACACATTGATCCATGTCTGTCATGTTGGAAATTTCATTCTCTaGACATGGGGTACAATCAAAACAGCAGACAGCCTTTCCTTTCTG +
Preference number: 1 (lower is better)
Translates to: LHTLIHVCHVGNFIL*TWGTIKTADSLSFL
Trigger: CAGAAAGGAAAGGCTGTCTGCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACATGGATCAATGTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp CCAGGAAGGTCACAACTTTCTTTAGGCAGTGAGTTTGTTTTATGTTaGCATACTGATCATTTGGACACTTCACACATTGATCCATGTCTG +
Preference number: 1 (lower is better)
Translates to: PGRSQLSLGSEFVLC*HTDHLDTSHIDPCL
Trigger: CAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATAAAACAAACTCACTGCCTAAAGAAAGTTGTGACCTTCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 90 bp CTAAACTTAATATGGGTACTTGATCTGAGAATTTCTAGATCTGTTTaGATGGAAGAAGGTGTGGATAGAGAGGCCAGGGGAACTCAAAAG +
Preference number: 1 (lower is better)
Translates to: LNLIWVLDLRISRSV*MEEGVDREARGTQK
Trigger: CTTTTGAGTTCCCCTGGCCTCTCTATCCACACCTTCTTCCATTCAAACAGATCTAGAAATTCTCAGATCAAGTACCCATATTAAGTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp GCAGATGAAAGGATATGTGCAAAGCTGGAACCTAGAATGAAGATATaGTTTACATGTGATGAAGTCAGACAGAAAGTGCTATGCTGGTGT +
Preference number: 1 (lower is better)
Translates to: ADERICAKLEPRMKI*FTCDEVRQKVLCWC
Trigger: ACACCAGCATAGCACTTTCTGTCTGACTTCATCACATGTAAATCATATCTTCATTCTAGGTTCCAGCTTTGCACATATCCTTTCATCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 90 bp CTGACAGAAGTCTATAGATTGGTATGTCCAGTTACAGAGAATATCTaGATGGTGACAGTCATGAAATCCTTGGAGATCTTGGTAGATCAT +
Preference number: 1 (lower is better)
Translates to: LTEVYRLVCPVTENI*MVTVMKSLEILVDH
Trigger: ATGATCTACCAAGATCTCCAAGGATTTCATGACTGTCACCATCCAGATATTCTCTGTAACTGGACATACCAATCTATAGACTTCTGTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 90 bp ATAGGTTGTAACTTGGCTCGCTCATTGACACTTCAAACTGGTGCCTaGATAACCATTCTAGTAGGATTTTGGTTGAACAATTTTTCAGTG +
Preference number: 1 (lower is better)
Translates to: IGCNLARSLTLQTGA*ITILVGFWLNNFSV
Trigger: CACTGAAAAATTGTTCAACCAAAATCCTACTAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGTTACAACCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp ACTGATCATTTGGACACTTCACACATTGATCCATGTCTGTCATGTTaGAAATTTCATTCTCTGGACATGGGGTACAATCAAAACAGCAGA +
Preference number: 1 (lower is better)
Translates to: TDHLDTSHIDPCLSC*KFHSLDMGYNQNSR
Trigger: TCTGCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp CATCTTCATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATaGAATAGGTTATACAGGGCTTGCTGTAGTAAGAAAGCTAGGTTC +
Preference number: 1 (lower is better)
Translates to: HLHEVGFKVRILLSI*NRLYRACCSKKARF
Trigger: GAACCTAGCTTTCTTACTACAGCAAGCCCTGTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATGAAGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 90 bp CATTCTAGTAGGATTTTGGTTGAACAATTTTTCAGTGTCTTACAATaGGATGGCAATGAACAGTTGAAATACAGCCACCACAACCTAGCA +
Preference number: 1 (lower is better)
Translates to: HSSRILVEQFFSVLQ*DGNEQLKYSHHNLA
Trigger: TGCTAGGTTGTGGTGGCTGTATTTCAACTGTTCATTGCCATCTCATTGTAAGACACTGAAAAATTGTTCAACCAAAATCCTACTAGAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp TTCCTGTTTATTTGTTTGATTGCAAACAATAGAGCCAAAATCAGGTaGATATTTCTGGTTGTCAATATGTATTGGTGGCTGGGCACTTCA +
Preference number: 1 (lower is better)
Translates to: FLFICLIANNRAKIR*IFLVVNMYWWLGTS
Trigger: TGAAGTGCCCAGCCACCAATACATATTGACAACCAGAAATATCCACCTGATTTTGGCTCTATTGTTTGCAATCAAACAAATAAACAGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 90 bp TTGACACTTCAAACTGGTGCCTGGATAACCATTCTAGTAGGATTTTaGTTGAACAATTTTTCAGTGTCTTACAATGAGATGGCAATGAAC +
Preference number: 1 (lower is better)
Translates to: LTLQTGAWITILVGF*LNNFSVSYNEMAMN
Trigger: GTTCATTGCCATCTCATTGTAAGACACTGAAAAATTGTTCAACCAAAATCCTACTAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCGAGGGGACTGCAGGTTaGGGAATGTGTACATTGGGC +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPEGTAG*GMCTLG
Trigger: GCCCAATGTACACATTCCCCAACCTGCAGTCCCCTC...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCAGTAAGAAGGTACTGTaGGTGGTGGCAGGAGGAGAA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPSKKVL*VVAGGE
Trigger: TTCTCCTCCTGCCACCACCCACAGTACCTTCTTACT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCTACCATGGGTGCAGGTaGAGGTGCCTCACTGATAAA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPYHGCR*RCLTDK
Trigger: TTTATCAGTGAGGCACCTCCACCTGCACCCATGGTA...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCGGAAGGGATGAATTTTaGGGTAGCAGGCATGTCAGT +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPGRDEF*GSRHVS
Trigger: ACTGACATGCCTGCTACCTCAAAATTCATCCCTTCC...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCAGTGCTATGCTGGTGTaGAGGCTGTCTCCTTATCTA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPSAMLV*RLSPYL
Trigger: TAGATAAGGAGACAGCCTGCACACCAGCATAGCACT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCCCAATCTTTCCCACATaGCCAACCACCCTACTTCAT +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPPIFPT*PTTLLH
Trigger: ATGAAGTAGGGTGGTTGGCCATGTGGGAAAGATTGG...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAGGACTGGAAGTATCATaGGGCTCTGGCAGGGCAGCA +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRGLEVS*GSGRAA
Trigger: TGCTGCCCTGCCAGAGCCCCATGATACTTCCAGTCC...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCCTTGTCAAAGGAATTTaGTGTTCGGTAGGGTTCTCA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPLVKGI*CSVGFS
Trigger: TGAGAACCCTACCGAACACCAAATTCCTTTGACAAG...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCTATTTTCTTGACCTTTaGACTGGTAGTCTTCACCCA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPYFLDL*TGSLHP
Trigger: TGGGTGAAGACTACCAGTTCAAAGGTCAAGAAAATA...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCAACCACCCTACTTCATaGCTTTTCTTTCATTCAAGC +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPNHPTS*LFFHSS
Trigger: GCTTGAATGAAAGAAAAGGCATGAAGTAGGGTGGTT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGGCATGTCAGTCTaGCACTGGTGCAGATGGAGA +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEAGMSV*HWCRWR
Trigger: TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGC...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGAGAAGGTACTGTGGGTaGTGGCAGGAGGAGAAGTTC +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQRRYCG*WQEEKF
Trigger: GAACTTCTCCTCCTGCCACCACCCACAGTACCTTCT...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCACAACCACCATTGCCTTTCCCTTGGTGCTATGGTAGACTGGGAGAAAAGGGACTGGAAGTATCATaGGGCTCTGGCAGGGCAGCA +
Preference number: 2 (lower is better)
Translates to: FPQPPLPFPWCYGRLGEKGLEVS*GSGRAA
Trigger: TGCTGCCCTGCCAGAGCCCCATGATACTTCCAGTCC...CTTTTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCATTAGGTTCTTGTGCTaGTCTTTCCCTAATTCTGGT +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPIRFLC*SFPNSG
Trigger: ACCAGAATTAGGGAAAGACCAGCACAAGAACCTAAT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGACCACTAAGGCCGTCATaGCCAGGGTCAGAAATGTGT +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRPLRPS*PGSEMC
Trigger: ACACATTTCTGACCCTGGCCATGACGGCCTTAGTGG...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCTCCATCTATGGTGATTaGAAGTTTTGCCAGGTAAAA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPSIYGD*KFCQVK
Trigger: TTTTACCTGGCAAAACTTTCAATCACCATAGATGGA...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTCTGGAGAAAGCAGTTaGTTGTGGCACAGGCAGGAG +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWESGESS*LWHRQE
Trigger: CTCCTGCCTGTGCCACAACCAACTGCTTTCTCCAGA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGAGAAGGTACTGTGGGTaGTGGCAGGAGGAGAAGTTC +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWERRYCG*WQEEKF
Trigger: GAACTTCTCCTCCTGCCACCACCCACAGTACCTTCT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCGGACAATACACATTATaGCAGATGAAAGGATATGTG +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPGQYTL*QMKGYV
Trigger: CACATATCCTTTCATCTGCCATAATGTGTATTGTCC...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATTTTGGGGTCCCAGGTaGTGTGAGTATTGGAGTTGG +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRFWGPR*CEYWSW
Trigger: CCAACTCCAATACTCACACCACCTGGGACCCCAAAA...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGACATTTTCTGGACTTTTaGGGTCCCAGGTGGTGTGAG +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRHFLDF*GPRWCE
Trigger: CTCACACCACCTGGGACCCCAAAAGTCCAGAAAATG...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCAGAGCCAAAATCAGGTaGATATTTCTGGTTGTCAAT +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPRAKIR*IFLVVN
Trigger: ATTGACAACCAGAAATATCCACCTGATTTTGGCTCT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCGGAAATTTCATTCTCTaGACATGGGGTACAATCAAA +
Preference number: 2 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPGNFIL*TWGTIK
Trigger: TTTGATTGTACCCCATGTCCAGAGAATGAAATTTCC...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAAGTAGAGCTGGATCTTaGCCTGGTCATTCTCAGCTT +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRSRAGS*PGHSQL
Trigger: AAGCTGAGAATGACCAGGTCAAGATCCAGCTCTACT...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGACTTGGCTCGCTCATTaGCACTTCAAACTGGTGCCT +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWETWLAH*HFKLVP
Trigger: AGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAAGTGCTATGCTGGTGTaGAGGCTGTCTCCTTATCTA +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRSAMLV*RLSPYL
Trigger: TAGATAAGGAGACAGCCTGCACACCAGCATAGCACT...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGGGGTGCAGGTGGAGGTaGCTCACTGATAAATCTTAT +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQGCRWR*LTDKSY
Trigger: ATAAGATTTATCAGTGAGGCACCTCCACCTGCACCC...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TTTCCACAACCACCATTGCCTTTCCCTTGGTGCTATGGTAGACTGGGAGAAAAGTCAGTCTGCCACTGGTaGAGATGGAGATGTGGACTG +
Preference number: 2 (lower is better)
Translates to: FPQPPLPFPWCYGRLGEKSVCHW*RWRCGL
Trigger: CAGTCCACATCTCCATCTGCACCAGTGGCAGACTGA...CTTTTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTGAATGGAAGAAGGTGTaGATAGAGAGGCCAGGGGAA +
Preference number: 2 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLEWKKV*IERPGE
Trigger: TTCCCCTGGCCTCTCTATCCACACCTTCTTCCATTC...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGAGGTTGAGTGTGTCGTaGGAGGGGACTGCAGGTTGG +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRRLSVS*EGTAGW
Trigger: CCAACCTGCAGTCCCCTCCCACGACACACTCAACCT...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGGAAGGGATGAATTTTaGGGTAGCAGGCATGTCAGT +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEGRDEF*GSRHVS
Trigger: ACTGACATGCCTGCTACCTCAAAATTCATCCCTTCC...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAATAGTCATGGCTTCCTaGAAGCTTCTTGGTTCTGGT +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRIVMAS*KLLGSG
Trigger: ACCAGAACCAAGAAGCTTTCAGGAAGCCATGACTAT...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGCAGGCATGTCAGTCTaGCACTGGTGCAGATGGAGA +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRAGMSV*HWCRWR
Trigger: TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGGTTGAGTGTGTCGTaGGAGGGGACTGCAGGTTGG +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRRLSVS*EGTAGW
Trigger: CCAACCTGCAGTCCCCTCCCACGACACACTCAACCT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TCAGGTGGATATTTCTGGTTGTCAATATGTATTGGTGGCTGGGCACTTCAGTGTAGTGAAGATCCCGGTTaGTGGCTCCAGTGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: SGGYFWLSICIGGWALQCSEDPG*WLQWQQ
Trigger: TTGCTGCCACTGGAGCCACCAACCGGGATCTTCACT...ACACTGAAGTGCCCAGCCACCAATACATATTGACAACCAGAAATATCCACCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCCAGGTAAGGCATGCTaGTCTACCATGGGTGCAGGT +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLPGKAC*STMGAG
Trigger: ACCTGCACCCATGGTAGATCAGCATGCCTTACCTGG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTGACAGAACCCATGTCTaGTTGCCTCTATCGGGCACC +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRDRTHV*LPLSGT
Trigger: GGTGCCCGATAGAGGCAAGCAGACATGGGTTCTGTC...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp AACTTGGCTCGCTCATTGACACTTCAAACTGGTGCCTGGATAACCATTCTAGTAGTTGCAGAAGGCACCTaGACACTGCCAGTCTTCTCT +
Preference number: 2 (lower is better)
Translates to: NLARSLTLQTGAWITILVVAEGT*TLPVFS
Trigger: AGAGAAGACTGGCAGTGTGCAGGTGCCTTCTGCAAC...TACTAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCATGCTGATCTACCATaGGTGCAGGTGGAGGTGCCT +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLHADLP*VQVEVP
Trigger: AGGCACCTCCACCTGCACCCATGGTAGATCAGCATG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGCACATGCTGATCTACCATaGGTGCAGGTGGAGGTGCCT +
Preference number: 2 (lower is better)
Translates to: WRRCSYPCSTKYKLDHGAHADLP*VQVEVP
Trigger: AGGCACCTCCACCTGCACCCATGGTAGATCAGCATG...TGCACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGAGTTATCAGTCTTTCTaGGAGGCAGGCAGATCTATG +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWESYQSF*EAGRSM
Trigger: CATAGATCTGCCTGCCTCCCAGAAAGACTGATAACT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGGACCCAGAAAAAGATaGGGTTCTGAGAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLGPRKR*GSERRG
Trigger: CCCCCTCCTCTCAGAACCCCATCTTTTTCTGGGTCC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGACACATTATGGCAGATaGAAGGATATGTGCAAAGCT +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQTHYGR*KDMCKA
Trigger: AGCTTTGCACATATCCTTTCATCTGCCATAATGTGT...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGCCCTCATCCACCCTCTaGCTGCTCCACACCCCATAC +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRPSSTL*LLHTPY
Trigger: GTATGGGGTGTGGAGCAGTCAGAGGGTGGATGAGGG...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGTCTGATGTCCAGCCGTaGGATAGTCATGGCTTCCTG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLSDVQP*DSHGFL
Trigger: CAGGAAGCCATGACTATCTCACGGCTGGACATCAGA...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAACAGCCTTTCCTTTCTaGATGAATTTTCGGAATCCT +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRTAFPF*MNFRNP
Trigger: AGGATTCCGAAAATTCATTCAGAAAGGAAAGGCTGT...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAGTAGAATGCAATAACTaGACCCTTGTTGCAGACAAT +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRVECNN*TLVADN
Trigger: ATTGTCTGCAACAAGGGTTCAGTTATTGCATTCTAC...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTTCAGTCTGCCACTGGTaGAGATGGAGATGTGGACTG +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSVCHW*RWRCGL
Trigger: CAGTCCACATCTCCATCTGCACCAGTGGCAGACTGA...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGTCCATGAGATCTTTTTaGCCATCTATCTACACACTG +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQSMRSF*PSIYTL
Trigger: CAGTGTGTAGATAGATGGCCAAAAAGATCTCATGGA...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTTCTGGAGAAAGCAGTTaGTTGTGGCACAGGCAGGAG +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSGESS*LWHRQE
Trigger: CTCCTGCCTGTGCCACAACCAACTGCTTTCTCCAGA...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACAGAAGGTACTGTGGGTaGTGGCAGGAGGAGAAGTTC +
Preference number: 2 (lower is better)
Translates to: DSHEILGDLGRSYRRERDRRYCG*WQEEKF
Trigger: GAACTTCTCCTCCTGCCACCACCCACAGTACCTTCT...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGAGTAAGAAGGTACTGTaGGTGGTGGCAGGAGGAGAA +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRSKKVL*VVAGGE
Trigger: TTCTCCTCCTGCCACCACCCACAGTACCTTCTTACT...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTATGAATAGATCTGTCTaGGTGGTAAGGTTGAGTGTG +
Preference number: 2 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLMNRSV*VVRLSV
Trigger: CACACTCAACCTTACCACCCAGACAGATCTATTCAT...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TCAGGTGGATATTTCTGGTTGTCAATATGTATTGGTGGCTGGGCACTTCAGTGTGGTTGGTGGCTCCAGTaGCAGCAAAATATCAAGCAG +
Preference number: 2 (lower is better)
Translates to: SGGYFWLSICIGGWALQCGWWLQ*QQNIKQ
Trigger: CTGCTTGATATTTTGCTGCCACTGGAGCCACCAACC...ACACTGAAGTGCCCAGCCACCAATACATATTGACAACCAGAAATATCCACCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTGGCCATTTGTTTACTTaGTGTCTGGTGTTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLGHLFT*CLVFCK
Trigger: TTTGCAAAACACCAGACATCAAGTAAACAAATGGCC...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAGTTTGTTTGTTTCCATaGGATCTTTTTGGCCATCTA +
Preference number: 2 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRVCLFP*DLFGHL
Trigger: TAGATGGCCAAAAAGATCTCATGGAAACAAACAAAC...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGATTTCTAGATCTGTTTaGATGGAAGAAGGTGTGGAT +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQISRSV*MEEGVD
Trigger: ATCCACACCTTCTTCCATTCAAACAGATCTAGAAAT...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGCAGGAGGAGAAGTTCTaGCAGAGCTTACAAATTATT +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEQEEKF*QSLQII
Trigger: AATAATTTGTAAGCTCTGTCAGAACTTCTCCTCCTG...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTATTTTCTTGACCTTTaGACTGGTAGTCTTCACCCA +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEYFLDL*TGSLHP
Trigger: TGGGTGAAGACTACCAGTTCAAAGGTCAAGAAAATA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGTCGTGGGAGGGGACTaGAGGTTGGGGAATGTGTAC +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRVVGGD*RLGNVY
Trigger: GTACACATTCCCCAACCTGCAGTCCCCTCCCACGAC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGACAGAAAGTGCTATaGTGGTGTGCAGGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRRQKVL*WCAGCL
Trigger: GAGACAGCCTGCACACCAGCATAGCACTTTCTGTCT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGAGTTTTCTCTTTCTGTaGGCTGACACTTTGCATAAA +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQSFLFL*ADTLHK
Trigger: TTTATGCAAAGTGTCAGCCCACAGAAAGAGAAAACT...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGGTTACAGAGAATATCTaGATGGTGACAGTCATGAAA +
Preference number: 2 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQVTENI*MVTVMK
Trigger: TTTCATGACTGTCACCATCCAGATATTCTCTGTAAC...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAAGGTTGAGTGTGTCGTaGGAGGGGACTGCAGGTTGG +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSRLSVS*EGTAGW
Trigger: CCAACCTGCAGTCCCCTCCCACGACACACTCAACCT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGTTTTGGGGTCCCAGGTaGTGTGAGTATTGGAGTTGG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLFWGPR*CEYWSW
Trigger: CCAACTCCAATACTCACACCACCTGGGACCCCAAAA...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTCATTTTCTGGACTTTTaGGGTCCCAGGTGGTGTGAG +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRHFLDF*GPRWCE
Trigger: CTCACACCACCTGGGACCCCAAAAGTCCAGAAAATG...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGTGCAGATGGAGATGTaGACTGGAAGTATCATGGGG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLVQMEM*TGSIMG
Trigger: CCCCATGATACTTCCAGTCCACATCTCCATCTGCAC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTATTGACACTTCAAACTaGTGCCTGGATAACCATTCT +
Preference number: 2 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLIDTSN*CLDNHS
Trigger: AGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAAT...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTCCATGTCTGTCATGTTaGAAATTTCATTCTCTGGAC +
Preference number: 2 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLPCLSC*KFHSLD
Trigger: GTCCAGAGAATGAAATTTCCAACATGACAGACATGG...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TTTCCACAACCACCATTGCCTTTCCCTTGGTGCTATGGTAGACTGGGAGAAAAGCCACAAAGTATAAGTTaGATCATGGTGCAGATGGGA +
Preference number: 2 (lower is better)
Translates to: FPQPPLPFPWCYGRLGEKPQSIS*IMVQMG
Trigger: TCCCATCTGCACCATGATCCAACTTATACTTTGTGG...CTTTTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAATCCCCCATCACACCTaGCCTCTAAACTTCCTGGGG +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSIPHHT*PLNFLG
Trigger: CCCCAGGAAGTTTAGAGGTCAGGTGTGATGGGGGAT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTCCATCTATGGTGATTaGAAGTTTTGCCAGGTAAAA +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWESIYGD*KFCQVK
Trigger: TTTTACCTGGCAAAACTTTCAATCACCATAGATGGA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTGTGTTTTCTTGTTTaGGATTACCCTCATGGTAGA +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWELCFLV*DYPHGR
Trigger: TCTACCATGAGGGTAATCTCAAACAAGAAAACACAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGTCGTGGGAGGGGACTaGAGGTTGGGGAATGTGTAC +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTVVGGD*RLGNVY
Trigger: GTACACATTCCCCAACCTGCAGTCCCCTCCCACGAC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGAGTGCTATGCTGGTGTaGAGGCTGTCTCCTTATCTA +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLSAMLV*RLSPYL
Trigger: TAGATAAGGAGACAGCCTGCACACCAGCATAGCACT...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGGGTGCAGGTGGAGGTaGCTCACTGATAAATCTTAT +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLGCRWR*LTDKSY
Trigger: ATAAGATTTATCAGTGAGGCACCTCCACCTGCACCC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGCAGGCATGTCAGTCTaGCACTGGTGCAGATGGAGA +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSAGMSV*HWCRWR
Trigger: TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp TTTCCACAACCACCATTGCCTTTCCCTTGGTGCTATGGTAGACTGGGAGAAAAGCAAAATATCAAGCAGTaGGCACTTGCTAGTGTTTCT +
Preference number: 2 (lower is better)
Translates to: FPQPPLPFPWCYGRLGEKQNIKQ*ALASVS
Trigger: AGAAACACTAGCAAGTGCGCACTGCTTGATATTTTG...CTTTTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGAATGAAATACTTCCCTaGAGCCAGTATCTACCATAT +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWENEILP*SQYLPY
Trigger: ATATGGTAGATACTGGCTGCAGGGAAGTATTTCATT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTTTGCCTTTCCCTTGGTaGTATGGTAGACTGGGAGAA +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRLPFPW*YGRLGE
Trigger: TTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAA...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACCCAATCTTTCCCACATaGCCAACCACCCTACTTCAT +
Preference number: 2 (lower is better)
Translates to: DSHEILGDLGRSYRRERDPIFPT*PTTLLH
Trigger: ATGAAGTAGGGTGGTTGGCCATGTGGGAAAGATTGG...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TGTCTGTCATGTTGGAAATTTCATTCTCTGGACATGGGGTACAATCAAAACAGCGAATGGAAGAAGGTGTaGATAGAGAGGCCAGGGGAA +
Preference number: 2 (lower is better)
Translates to: CLSCWKFHSLDMGYNQNSEWKKV*IERPGE
Trigger: TTCCCCTGGCCTCTCTATCCACACCTTCTTCCATTC...GCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CTTGAAAGCCATTACTACAGTAATTGTTTTGGCCAAAATAGTGGAAACTGCTACGAGGGGACTGCAGGTTaGGGAATGTGTACATTGGGC +
Preference number: 2 (lower is better)
Translates to: LESHYYSNCFGQNSGNCYEGTAG*GMCTLG
Trigger: GCCCAATGTACACATTCCCCAACCTGCAGTCCCCTC...GTAGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGGACTGGAAGTATCATaGGGCTCTGGCAGGGCAGCA +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTGLEVS*GSGRAA
Trigger: TGCTGCCCTGCCAGAGCCCCATGATACTTCCAGTCC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCCAGGTAAGGCATGCTaGTCTACCATGGGTGCAGGT +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYPGKAC*STMGAG
Trigger: ACCTGCACCCATGGTAGATCAGCATGCCTTACCTGG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGCAGACAATGATGATGTaGCCATGTTCAAAGTGTGGA +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRQTMMM*PCSKCG
Trigger: TCCACACTTTGAACATGGTCACATCATCATTGTCTG...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGACAGGTAACTCTCATTaGAGAAATTTGTACAGGAAT +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWETGNSH*RNLYRN
Trigger: ATTCCTGTACAAATTTCTGCAATGAGAGTTACCTGT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGCTGGATCTTGACCTaGTCATTCTCAGCTTTCTGT +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSWILT*SFSAFC
Trigger: ACAGAAAGCTGAGAATGACCAGGTCAAGATCCAGCT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGAGGGGACTGCAGGTTaGGGAATGTGTACATTGGGC +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYEGTAG*GMCTLG
Trigger: GCCCAATGTACACATTCCCCAACCTGCAGTCCCCTC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACACATGCTGATCTACCATaGGTGCAGGTGGAGGTGCCT +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTHADLP*VQVEVP
Trigger: AGGCACCTCCACCTGCACCCATGGTAGATCAGCATG...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGTTATCAGTCTTTCTaGGAGGCAGGCAGATCTATG +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSYQSF*EAGRSM
Trigger: CATAGATCTGCCTGCCTCCCAGAAAGACTGATAACT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGGACCCAGAAAAAGATaGGGTTCTGAGAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYGPRKR*GSERRG
Trigger: CCCCCTCCTCTCAGAACCCCATCTTTTTCTGGGTCC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGCTGGTCTCTCAGGTaGCAGATAAAACTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSWSLR*QIKLCL
Trigger: AAGACACAGTTTTATCTGCCACCTGAGAGACCAGCT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTCCATTTTAGGTCTTaGACCATTTTGTTCATTTCC +
Preference number: 2 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEFHFRS*TILFIS
Trigger: GGAAATGAACAAAATGGTCCAAGACCTAAAATGGAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGCTCCTTGACACTGCATaGAATGGGAATTTCCAACTA +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRLLDTA*NGNFQL
Trigger: TAGTTGGAAATTCCCATTCCATGCAGTGTCAAGGAG...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TGTCTGTCATGTTGGAAATTTCATTCTCTGGACATGGGGTACAATCAAAACAGCGGAATGGCCCAAGTATaGCAGATGAAAACCACCTTG +
Preference number: 2 (lower is better)
Translates to: CLSCWKFHSLDMGYNQNSGMAQV*QMKTTL
Trigger: CAAGGTGGTTTTCATCTGCCATACTTGGGCCATTCC...GCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTGATGACTATGGGTGTTaGACATTTCTTTATGTGCTT +
Preference number: 2 (lower is better)
Translates to: QVGECVHWALTEVYRLVCDDYGC*TFLYVL
Trigger: AAGCACATAAAGAAATGTTCAACACCCATAGTCATC...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTATTTCTAGATCTGTTTaGATGGAAGAAGGTGTGGAT +
Preference number: 2 (lower is better)
Translates to: QVGECVHWALTEVYRLVCISRSV*MEEGVD
Trigger: ATCCACACCTTCTTCCATTCAAACAGATCTAGAAAT...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAAAGGCACCTGCACACTaGCAGTCTTCTCTAGTTGAG +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSKAPAH*QSSLVE
Trigger: CTCAACTAGAGAAGACTGGCAGTGTGCAGGTGCCTT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp AATGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGAGCTGGATCTTGACCTaGTCATTCTCAGCTTTCTGT +
Preference number: 2 (lower is better)
Translates to: NGGDVPIHVPQSISWIMVSWILT*SFSAFC
Trigger: ACAGAAAGCTGAGAATGACCAGGTCAAGATCCAGCT...CACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGCATCTATCTACACACTaGCAGTGTAGGTTTTGCTTA +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRHLSTH*QCRFCL
Trigger: TAAGCAAAACCTACACTGCCAGTGTGTAGATAGATG...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGTCCATGAGATCTTTTTaGCCATCTATCTACACACTG +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRSMRSF*PSIYTL
Trigger: CAGTGTGTAGATAGATGGCCAAAAAGATCTCATGGA...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGATGAATAGATCTGTCTaGGTGGTAAGGTTGAGTGTG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLMNRSV*VVRLSV
Trigger: CACACTCAACCTTACCACCCAGACAGATCTATTCAT...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGTGCCACTGGTGCAGATaGAGATGTGGACTGGAAGTA +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRCHWCR*RCGLEV
Trigger: TACTTCCAGTCCACATCTCCATCTGCACCAGTGGCA...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGAAGATCCCGGTTGGTaGCTCCAGTGGCAGCAAAAT +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTEDPGW*LQWQQN
Trigger: ATTTTGCTGCCACTGGAGCCACCAACCGGGATCTTC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGCAGTCAATATGTATTGGTaGCTGGGCACTTCAGTGTTT +
Preference number: 2 (lower is better)
Translates to: WRRCSYPCSTKYKLDHGAVNMYW*LGTSVF
Trigger: AAACACTGAAGTGCCCAGCCACCAATACATATTGAC...TGCACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACGGCCATTTGTTTACTTaGTGTCTGGTGTTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: DSHEILGDLGRSYRRERDGHLFT*CLVFCK
Trigger: TTTGCAAAACACCAGACATCAAGTAAACAAATGGCC...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAAGTAGAGCTGGATCTTaGCCTGGTCATTCTCAGCTT +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSSRAGS*PGHSQL
Trigger: AAGCTGAGAATGACCAGGTCAAGATCCAGCTCTACT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGAGTAGAGCTGGATCTTaGCCTGGTCATTCTCAGCTT +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRSRAGS*PGHSQL
Trigger: AAGCTGAGAATGACCAGGTCAAGATCCAGCTCTACT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACACTGGCAGGGCAGCACTaGTTCTACATTTTCTGGACT +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTLAGQH*FYIFWT
Trigger: AGTCCAGAAAATGTAGAATCAGTGCTGCCCTGCCAG...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACAACCACCCTACTTCATaGCTTTTCTTTCATTCAAGC +
Preference number: 2 (lower is better)
Translates to: DSHEILGDLGRSYRRERDNHPTS*LFFHSS
Trigger: GCTTGAATGAAAGAAAAGGCATGAAGTAGGGTGGTT...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACAGACAGAAAGTGCTATaGTGGTGTGCAGGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYRQKVL*WCAGCL
Trigger: GAGACAGCCTGCACACCAGCATAGCACTTTCTGTCT...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCATCTATCTACACACTaGCAGTGTAGGTTTTGCTTA +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLHLSTH*QCRFCL
Trigger: TAAGCAAAACCTACACTGCCAGTGTGTAGATAGATG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGAATGGAAGAAGGTGTaGATAGAGAGGCCAGGGGAA +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYEWKKV*IERPGE
Trigger: TTCCCCTGGCCTCTCTATCCACACCTTCTTCCATTC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAAGTAAGAAGGTACTGTaGGTGGTGGCAGGAGGAGAA +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTSKKVL*VVAGGE
Trigger: TTCTCCTCCTGCCACCACCCACAGTACCTTCTTACT...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GCAGATGAAAACCACCTTGGTCCTGTAAGTACAGTTAAAATTCTTCTTCCATGTGTTGTCAATATGTATTaGTGGCTGGGCACTTCAGTG +
Preference number: 2 (lower is better)
Translates to: ADENHLGPVSTVKILLPCVVNMY*WLGTSV
Trigger: CACTGAAGTGCCCAGCCACCAATACATATTGACAAC...ACATGGAAGAAGAATTTTAACTGTACTTACAGGACCAAGGTGGTTTTCATCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGATGACTATGGGTGTTaGACATTTCTTTATGTGCTT +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLDDYGC*TFLYVL
Trigger: AAGCACATAAAGAAATGTTCAACACCCATAGTCATC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGTTTGTTTGTTTCCATaGGATCTTTTTGGCCATCTA +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLVCLFP*DLFGHL
Trigger: TAGATGGCCAAAAAGATCTCATGGAAACAAACAAAC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGGAAGGGATGAATTTTaGGGTAGCAGGCATGTCAGT +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYGRDEF*GSRHVS
Trigger: ACTGACATGCCTGCTACCTCAAAATTCATCCCTTCC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp AATGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGTTCAGTGTCTTACAATaGGATGGCAATGAACAGTTG +
Preference number: 2 (lower is better)
Translates to: NGGDVPIHVPQSISWIMVFSVLQ*DGNEQL
Trigger: CAACTGTTCATTGCCATCTCATTGTAAGACACTGAA...CACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGACAGGTAACTCTCATTaGAGAAATTTGTACAGGAAT +
Preference number: 2 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRTGNSH*RNLYRN
Trigger: ATTCCTGTACAAATTTCTGCAATGAGAGTTACCTGT...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGGGTGCAGGTGGAGGTaGCTCACTGATAAATCTTAT +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYGCRWR*LTDKSY
Trigger: ATAAGATTTATCAGTGAGGCACCTCCACCTGCACCC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGCAAGTTTTCTCTTTCTGTaGGCTGACACTTTGCATAAA +
Preference number: 2 (lower is better)
Translates to: WRRCSYPCSTKYKLDHGASFLFL*ADTLHK
Trigger: TTTATGCAAAGTGTCAGCCCACAGAAAGAGAAAACT...TGCACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGAGTTTTCTCTTTCTGTaGGCTGACACTTTGCATAAA +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLSFLFL*ADTLHK
Trigger: TTTATGCAAAGTGTCAGCCCACAGAAAGAGAAAACT...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TGTCTGTCATGTTGGAAATTTCATTCTCTGGACATGGGGTACAATCAAAACAGCTGGAAAATATATCAGTaGATCATTGTCTTCCCCTGG +
Preference number: 2 (lower is better)
Translates to: CLSCWKFHSLDMGYNQNSWKIYQ*IIVFPW
Trigger: CCAGGGGAAGACAATGATCCACTGATATATTTTCCA...GCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCCAATCTTTCCCACATaGCCAACCACCCTACTTCAT +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYPIFPT*PTTLLH
Trigger: ATGAAGTAGGGTGGTTGGCCATGTGGGAAAGATTGG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGGACAATACACATTATaGCAGATGAAAGGATATGTG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLGQYTL*QMKGYV
Trigger: CACATATCCTTTCATCTGCCATAATGTGTATTGTCC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGAGCTGGTCTCTCAGGTaGCAGATAAAACTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRSWSLR*QIKLCL
Trigger: AAGACACAGTTTTATCTGCCACCTGAGAGACCAGCT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGACCATGTTCAAAGTGTaGATCAGAATCAACAAATGG +
Preference number: 2 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLTMFKV*IRINKW
Trigger: CCATTTGTTGATTCTGATCCACACTTTGAACATGGT...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTaGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATC +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLL*IRFLCWSFPNSGCI
Trigger: GATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 90 bp GTAGTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTaGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGT +
Preference number: 2 (lower is better)
Translates to: VVRKLGSVGAILHYL*LIRFLCWSFPNSGC
Trigger: ACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTACTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 90 bp AAATTCCAGTTCTTTTCCAATATCCTTCTGCCAATGTTCTGTATGTaGAATAAGCATTTCATGGAGTGCATAGGCTACAGCATAGACAGC +
Preference number: 2 (lower is better)
Translates to: KFQFFSNILLPMFCM*NKHFMECIGYSIDS
Trigger: GCTGTCTATGCTGTAGCCTATGCACTCCATGAAATGCTTATTCAACATACAGAACATTGGCAGAAGGATATTGGAAAAGAACTGGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGCCAGTCTTCTCTAGTTaGGCAGTAGTGAACTCAATA +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRPVFSS*AVVNSI
Trigger: TATTGAGTTCACTACTGCTCAACTAGAGAAGACTGG...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGACTCATATCAGCTGGTaGATGCTATCTATTTGGTGG +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRTHISW*MLSIWW
Trigger: CCACCAAATAGATAGCATGCACCAGCTGATATGAGT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTTCAGGTGGATATTTCTaGTTGTCAATATGTATTGGT +
Preference number: 2 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRSGGYF*LSICIG
Trigger: ACCAATACATATTGACAACCAGAAATATCCACCTGA...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGGCCATTTGTTTACTTaGTGTCTGGTGTTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRGHLFT*CLVFCK
Trigger: TTTGCAAAACACCAGACATCAAGTAAACAAATGGCC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCATGGAAAATATATCAGTaGATCATTGTCTTCCCCTGG +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSWKIYQ*IIVFPW
Trigger: CCAGGGGAAGACAATGATCCACTGATATATTTTCCA...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAATGAATAGATCTGTCTaGGTGGTAAGGTTGAGTGTG +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTMNRSV*VVRLSV
Trigger: CACACTCAACCTTACCACCCAGACAGATCTATTCAT...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGATTAGGTTCTTGTGCTaGTCTTTCCCTAATTCTGGT +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRIRFLC*SFPNSG
Trigger: ACCAGAATTAGGGAAAGACCAGCACAAGAACCTAAT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCTGTTCTGGCATCTCTaGTATTTTAGGGATTGCAAG +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYLFWHL*YFRDCK
Trigger: CTTGCAATCCCTAAAATACCAGAGATGCCAGAACAG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGAAGGGTGCACTGTCTaGATGAATTTCTTAAAACCA +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSEGCTV*MNFLKP
Trigger: TGGTTTTAAGAAATTCATCCAGACAGTGCACCCTTC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CAA 90 bp CTTTCTTTAGGCAGTGAGTTTGTTTTATGTTGGCATACTGATCATTaGGACACTTCACACATTGATCCATGTCTGTCATGTTGGAAATTT +
Preference number: 2 (lower is better)
Translates to: LSLGSEFVLCWHTDH*DTSHIDPCLSCWKF
Trigger: AAATTTCCAACATGACAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATAAAACAAACTCACTGCCTAAAGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAATTTCTAGATCTGTTTaGATGGAAGAAGGTGTGGAT +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSISRSV*MEEGVD
Trigger: ATCCACACCTTCTTCCATTCAAACAGATCTAGAAAT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp ATCTTGAAAGCCATTACTACAGTAATTGTTTTGGCCAAAATAGTGGAAACTGCTCAGGAGGAGAAGTTCTaGCAGAGCTTACAAATTATT +
Preference number: 2 (lower is better)
Translates to: ILKAITTVIVLAKIVETAQEEKF*QSLQII
Trigger: AATAATTTGTAAGCTCTGTCAGAACTTCTCCTCCTG...AGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACACAGGAGGAGAAGTTCTaGCAGAGCTTACAAATTATT +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTQEEKF*QSLQII
Trigger: AATAATTTGTAAGCTCTGTCAGAACTTCTCCTCCTG...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGAGCTGGAACCTAGAATaGAGATATGATTTACATGTG +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRSWNLE*RYDLHV
Trigger: CACATGTAAATCATATCTTCATTCTAGGTTCCAGCT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGGAATTTGGCTTCATTaGATCTATCAGGCAGATTTC +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTGIWLH*IYQADF
Trigger: GAAATCTGCCTGATAGATTCAATGAAGCCAAATTCC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR GCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACAACCACCCTACTTCATaGCTTTTCTTTCATTCAAGC +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYNHPTS*LFFHSS
Trigger: GCTTGAATGAAAGAAAAGGCATGAAGTAGGGTGGTT...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR GCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCAGACTTTGTGTTTGTaGATCTCTCCTCTCAACTTA +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYQTLCL*ISPLNL
Trigger: TAAGTTGAGAGGAGAGATGCACAAACACAAAGTCTG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACATGGAAAATATATCAGTaGATCATTGTCTTCCCCTGG +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTWKIYQ*IIVFPW
Trigger: CCAGGGGAAGACAATGATCCACTGATATATTTTCCA...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCATCTATCTACACACTaGCAGTGTAGGTTTTGCTTA +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYHLSTH*QCRFCL
Trigger: TAAGCAAAACCTACACTGCCAGTGTGTAGATAGATG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGTTTGTTTGTTTCCATaGGATCTTTTTGGCCATCTA +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTVCLFP*DLFGHL
Trigger: TAGATGGCCAAAAAGATCTCATGGAAACAAACAAAC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAAGCTGGAACCTAGAATaGAGATATGATTTACATGTG +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTSWNLE*RYDLHV
Trigger: CACATGTAAATCATATCTTCATTCTAGGTTCCAGCT...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CTTGAAAGCCATTACTACAGTAATTGTTTTGGCCAAAATAGTGGAAACTGCTACATCATTGTCTTCCCCTaGTACTTAGTGACTATATAT +
Preference number: 2 (lower is better)
Translates to: LESHYYSNCFGQNSGNCYIIVFP*YLVTIY
Trigger: ATATATAGTCACTAAGTACCAGGGGAAGACAATGAT...GTAGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGATCATTGTCTTCCCCTaGTACTTAGTGACTATATAT +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRIIVFP*YLVTIY
Trigger: ATATATAGTCACTAAGTACCAGGGGAAGACAATGAT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGTTACAGAGAATATCTaGATGGTGACAGTCATGAAA +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYVTENI*MVTVMK
Trigger: TTTCATGACTGTCACCATCCAGATATTCTCTGTAAC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCATTCCATTTTAGGTCTTaGACCATTTTGTTCATTTCC +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSFHFRS*TILFIS
Trigger: GGAAATGAACAAAATGGTCCAAGACCTAAAATGGAA...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGTTCCATTTTAGGTCTTaGACCATTTTGTTCATTTCC +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRFHFRS*TILFIS
Trigger: GGAAATGAACAAAATGGTCCAAGACCTAAAATGGAA...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGCTATTATTCTTATTATaGTCCTCTTACTGTGTCCCA +
Preference number: 2 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRLLFLL*SSYCVP
Trigger: TGGGACACAGTAAGAGGACCATAATAAGAATAATAG...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCACTATTATTCTTATTATaGTCCTCTTACTGTGTCCCA +
Preference number: 2 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSLLFLL*SSYCVP
Trigger: TGGGACACAGTAAGAGGACCATAATAAGAATAATAG...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGTTCTCATACATTTGTaGCCATGTCTTTCTTTAGGT +
Preference number: 2 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYVLIHL*PCLSLG
Trigger: ACCTAAAGAAAGACATGGCCACAAATGTATGAGAAC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACACAGAAATGTGTTCTTTaGAGACATCTGGTACAGATA +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTQKCVL*RHLVQI
Trigger: TATCTGTACCAGATGTCTCCAAAGAACACATTTCTG...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAATCATTGTCTTCCCCTaGTACTTAGTGACTATATAT +
Preference number: 2 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTIIVFP*YLVTIY
Trigger: ATATATAGTCACTAAGTACCAGGGGAAGACAATGAT...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp AGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATGTaGACTGGAAGTATCATGGGGCTCTGGCAGGGCAGC +
Preference number: 3 (lower is better)
Translates to: RHVSLPLVQMEM*TGSIMGLWQGS
Trigger: GCTGCCCTGCCAGAGCCCCATGATACTTCCAGTCCACATCTCCATCTGCACCAGTGGCAGACTGACATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATaGAGATGTGGACTGGAAGTATCATGGGGCTCTGGC +
Preference number: 3 (lower is better)
Translates to: EVAGMSVCHWCR*RCGLEVSWGSG
Trigger: GCCAGAGCCCCATGATACTTCCAGTCCACATCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCGGGACCTGTAGAGCTTaGAATGTCAGGGTAGAAGAA +
Preference number: 3 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPGTCRA*NVRVEE
Trigger: TTCTTCTACCCTGACATTCAAAGCTCTACAGGTCCC...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCAGTCGGTTATTCGCCTaGACAATGGGATTGTCTTGG +
Preference number: 3 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPSRLFA*TMGLSW
Trigger: CCAAGACAATCCCATTGTCAAGGCGAATAACCGACT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp GTAAGGTTGAGTGTGTCGTGGGAGGGGACTGCAGGTTaGGGAATGTGTACATTGGGCCCTGACAGAAGTCTA +
Preference number: 3 (lower is better)
Translates to: VRLSVSWEGTAG*GMCTLGPDRSL
Trigger: TAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTGCAGTCCCCTCCCACGACACACTCAACCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp TGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTaGGAGGCAGGCAGATCTATGAGGTCCCAGGTAAGG +
Preference number: 3 (lower is better)
Translates to: WGLTHVPSYQSF*EAGRSMRSQVR
Trigger: CCTTACCTGGGACCTCATAGATCTGCCTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp CCTGAATGCAGGTGTAGGTGTGGACCCAGAAAAAGATaGGGTTCTGAGAGGAGGGGGACAGAACCCATGTCT +
Preference number: 3 (lower is better)
Translates to: PECRCRCGPRKR*GSERRGTEPMS
Trigger: AGACATGGGTTCTGTCCCCCTCCTCTCAGAACCCCATCTTTTTCTGGGTCCACACCTACACCTGCATTCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCTTAGAGCAGTCTTCTTaGGAGATAGGAAGGGATGAA +
Preference number: 3 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPLEQSS*EIGRDE
Trigger: TTCATCCCTTCCTATCTCCAAAGAAGACTGCTCTAA...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp CGTGGGAGGGGACTGCAGGTTGGGGAATGTGTACATTaGGCCCTGACAGAAGTCTATAGATTGGTATGTCCA +
Preference number: 3 (lower is better)
Translates to: RGRGLQVGECVH*ALTEVYRLVCP
Trigger: TGGACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTGCAGTCCCCTCCCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGTCTGGGTGGTAAGGTaGAGTGTGTCGTGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRVWVVR*SVSWEG
Trigger: CCCCTCCCACGACACACTCAACCTTACCACCCAGAC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp AATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTaGAGATGGAGATGTGGACTGGAAGTATCATGGGGC +
Preference number: 3 (lower is better)
Translates to: NFEVAGMSVCHW*RWRCGLEVSWG
Trigger: GCCCCATGATACTTCCAGTCCACATCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp AATAGATCTGTCTGGGTGGTAAGGTTGAGTGTGTCGTaGGAGGGGACTGCAGGTTGGGGAATGTGTACATTG +
Preference number: 3 (lower is better)
Translates to: NRSVWVVRLSVS*EGTAGWGMCTL
Trigger: CAATGTACACATTCCCCAACCTGCAGTCCCCTCCCACGACACACTCAACCTTACCACCCAGACAGATCTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GACTTTTGGGGTCCCAGGTGGTGTGAGTATTGGAGTTaGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTC +
Preference number: 3 (lower is better)
Translates to: DFWGPRWCEYWS*GLTHVPSYQSF
Trigger: GAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACCTGGGACCCCAAAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp CTGGCGTTAACTGTTCCTGGGGTTCCTGAGTGTAGCTaGTCTCTCAGGTGGCAGATAAAACTGTGTCTTTCG +
Preference number: 3 (lower is better)
Translates to: LALTVPGVPECS*SLRWQIKLCLS
Trigger: CGAAAGACACAGTTTTATCTGCCACCTGAGAGACCAGCTACACTCAGGAACCCCAGGAACAGTTAACGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp GGGGACTGCAGGTTGGGGAATGTGTACATTGGGCCCTaGCAGAAGTCTATAGATTGGTATGTCCAGTTACAG +
Preference number: 3 (lower is better)
Translates to: GDCRLGNVYIGP*QKSIDWYVQLQ
Trigger: CTGTAACTGGACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTGCAGTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp GAGCAGTCTTCTTTGGAGATAGGAAGGGATGAATTTTaGGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAG +
Preference number: 3 (lower is better)
Translates to: EQSSLEIGRDEF*GSRHVSLPLVQ
Trigger: CTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCCTTCCTATCTCCAAAGAAGACTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp GCAGAAGGCACCTGCACACTGCCAGTCTTCTCTAGTTaGGCAGTAGTGAACTCAATAGCTGGCATATTCCAG +
Preference number: 3 (lower is better)
Translates to: AEGTCTLPVFSS*AVVNSIAGIFQ
Trigger: CTGGAATATGCCAGCTATTGAGTTCACTACTGCTCAACTAGAGAAGACTGGCAGTGTGCAGGTGCCTTCTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAGATGGCAATGAACAGTaGAAATACAGCCACCACAAC +
Preference number: 3 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRDGNEQ*KYSHHN
Trigger: GTTGTGGTGGCTGTATTTCAACTGTTCATTGCCATC...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp ATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTaGTGCAGATGGAGATGTGGACTGGAAGTATCATGG +
Preference number: 3 (lower is better)
Translates to: MNFEVAGMSVCH*CRWRCGLEVSW
Trigger: CCATGATACTTCCAGTCCACATCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGAGTGGCAAGAAAATATaGGAACAATGCACGCTGAGC +
Preference number: 3 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWESGKKI*EQCTLS
Trigger: GCTCAGCGTGCATTGTTCCAATATTTTCTTGCCACT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TTTCCACAACCACCATTGCCTTTCCCTTGGTGCTATGGTAGACTGGGAGAAAAGTTAGTAACTGTATGGTaGCAGAAGGCACCTGCACAC +
Preference number: 3 (lower is better)
Translates to: FPQPPLPFPWCYGRLGEKLVTVW*QKAPAH
Trigger: GTGTGCAGGTGCCTTCTGCAACCATACAGTTACTAA...CTTTTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCCTTGACAATGGGATaGTCTTGGTGTTTCAAAAGG +
Preference number: 3 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEALTMG*SWCFKR
Trigger: CCTTTTGAAACACCAAGACAATCCCATTGTCAAGGC...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAAGTAAAGCTGTGGTATaGCAAAGATGTGTAGGAATG +
Preference number: 3 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRSKAVV*QRCVGM
Trigger: CATTCCTACACATCTTTGCAATACCACAGCTTTACT...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 72 bp AGCTGGTGCATGCTATCTATTTGGTGGTCCAGTGTTTaGGAGATATCAGAGGTCCACATTGAGACTGCTGGT +
Preference number: 3 (lower is better)
Translates to: SWCMLSIWWSSV*EISEVHIETAG
Trigger: ACCAGCAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATAGCATGCACCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GTCAGTGAAGAATTTAAAGGCAGTAAGAAGGTACTGTaGGTGGTGGCAGGAGGAGAAGTTCTGACAGAGCTT +
Preference number: 3 (lower is better)
Translates to: VSEEFKGSKKVL*VVAGGEVLTEL
Trigger: AAGCTCTGTCAGAACTTCTCCTCCTGCCACCACCCACAGTACCTTCTTACTGCCTTTAAATTCTTCACTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp CCTTATCTAAGACTAGAGTGTATGAATAGATCTGTCTaGGTGGTAAGGTTGAGTGTGTCGTGGGAGGGGACT +
Preference number: 3 (lower is better)
Translates to: PYLRLECMNRSV*VVRLSVSWEGT
Trigger: AGTCCCCTCCCACGACACACTCAACCTTACCACCCAGACAGATCTATTCATACACTCTAGTCTTAGATAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGACTTATATTGCAAATATaGTCCCCTTTCCTTTTTCCC +
Preference number: 3 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRLILQI*SPFLFP
Trigger: GGGAAAAAGGAAAGGGGACAATATTTGCAATATAAG...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGCTTATATTGCAAATATaGTCCCCTTTCCTTTTTCCC +
Preference number: 3 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQLILQI*SPFLFP
Trigger: GGGAAAAAGGAAAGGGGACAATATTTGCAATATAAG...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGTCTGGGTGGTAAGGTaGAGTGTGTCGTGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTVWVVR*SVSWEG
Trigger: CCCCTCCCACGACACACTCAACCTTACCACCCAGAC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp ATCTTGAAAGCCATTACTACAGTAATTGTTTTGGCCAAAATAGTGGAAACTGCTGTCTGGGTGGTAAGGTaGAGTGTGTCGTGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: ILKAITTVIVLAKIVETAVWVVR*SVSWEG
Trigger: CCCCTCCCACGACACACTCAACCTTACCACCCAGAC...AGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTGTTGATTAGGTTCTaGTGCTGGTCTTTCCCTAAT +
Preference number: 3 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWELLIRF*CWSFPN
Trigger: ATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGACCAATGTTCTGTATGTaGAATAAGCATTTCATGGAG +
Preference number: 3 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRPMFCM*NKHFME
Trigger: CTCCATGAAATGCTTATTCAACATACAGAACATTGG...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 72 bp ACAATGCACGCTGAGCCTGTGCTATATTGGGTGAGTTaGAGAAAATCTAGATTGAGAGGTTCAGGGAGGCTA +
Preference number: 3 (lower is better)
Translates to: TMHAEPVLYWVS*RKSRLRGSGRL
Trigger: TAGCCTCCCTGAACCTCTCAATCTAGATTTTCTTCAACTCACCCAATATAGCACAGGCTCAGCGTGCATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTCTTCACATGTCCAAATaGATGACAGATAATGCAATC +
Preference number: 3 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLLHMSK*MTDNAI
Trigger: GATTGCATTATCTGTCATCAATTTGGACATGTGAAG...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGTTGAAGATATTTTCTaGACCTTTGAACTGGTAGTC +
Preference number: 3 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEVEDIF*TFELVV
Trigger: GACTACCAGTTCAAAGGTCAAGAAAATATCTTCAAC...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTTAGCATTCTTTCCTaGTTCTGTGTGTTTACTGTG +
Preference number: 3 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEFSILS*FCVFTV
Trigger: CACAGTAAACACACAGAACAAGGAAAGAATGCTAAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp GTAAGCCTATCTAGAACAAAGAGTAGAGCTGGATCTTaGCCTGGTCATTCTCAGCTTTCTGTGAAACCACCA +
Preference number: 3 (lower is better)
Translates to: VSLSRTKSRAGS*PGHSQLSVKPP
Trigger: TGGTGGTTTCACAGAAAGCTGAGAATGACCAGGTCAAGATCCAGCTCTACTCTTTGTTCTAGATAGGCTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp AGAAGGTACTGTGGGTGGTGGCAGGAGGAGAAGTTCTaGCAGAGCTTACAAATTATTTATAGAGCAGGAACA +
Preference number: 3 (lower is better)
Translates to: RRYCGWWQEEKF*QSLQIIYRAGT
Trigger: TGTTCCTGCTCTATAAATAATTTGTAAGCTCTGTCAGAACTTCTCCTCCTGCCACCACCCACAGTACCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp GCCCAAGTAACCCAGTACACAGTAGAATGCAATAACTaGACCCTTGTTGCAGACAATGATGATGTGACCATG +
Preference number: 3 (lower is better)
Translates to: AQVTQYTVECNN*TLVADNDDVTM
Trigger: CATGGTCACATCATCATTGTCTGCAACAAGGGTTCAGTTATTGCATTCTACTGTGTACTGGGTTACTTGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCTCTGGAGAAAGCAGTaGGTTGTGGCACAGGCAGGA +
Preference number: 3 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYLWRKQ*VVAQAG
Trigger: TCCTGCCTGTGCCACAACCAACTGCTTTCTCCAGAG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp TACAATCAAAACAGCAGACAGCCTTTCCTTTCTGAATaGATTTTCGGAATCCTACACTACAGGGCACACTGC +
Preference number: 3 (lower is better)
Translates to: YNQNSRQPFLSE*IFGILHYRAHC
Trigger: GCAGTGTGCCCTGTAGTGTAGGATTCCGAAAATTCATTCAGAAAGGAAAGGCTGTCTGCTGTTTTGATTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp AATGGAGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTTGGATCATGGTGAGTGGCAAGAAAATATaGGAACAATGCACGCTGAGC +
Preference number: 3 (lower is better)
Translates to: NGGDVPIHVPQSISWIMVSGKKI*EQCTLS
Trigger: GCTCAGCGTGCATTGTTCCAATATTTTCTTGCCACT...CACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp AACTTGGCTCGCTCATTGACACTTCAAACTGGTGCCTGGATAACCATTCTAGTATCAGAAATGTGTTCTTaGGAGACATCTGGTACAGAT +
Preference number: 3 (lower is better)
Translates to: NLARSLTLQTGAWITILVSEMCS*ETSGTD
Trigger: ATCTGTACCAGATGTCTCCAAAGAACACATTTCTGA...TACTAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGTGGACACTTCACACATaGATCCATGTCTGTCATGTT +
Preference number: 3 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLWTLHT*IHVCHV
Trigger: AACATGACAGACATGGATCAATGTGTGAAGTGTCCA...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR GCA 72 bp TCCAATCTTTCCCACATGGCCAACCACCCTACTTCATaGCTTTTCTTTCATTCAAGCAAGAATACCAAAAGT +
Preference number: 3 (lower is better)
Translates to: SNLSHMANHPTS*LFFHSSKNTKS
Trigger: ACTTTTGGTATTCTTGCTTGAATGAAAGAAAAGGCATGAAGTAGGGTGGTTGGCCATGTGGGAAAGATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp AGATATGATTTACATGTGATGAAGTCAGACAGAAAGTaGTATGCTGGTGTGCAGGCTGTCTCCTTATCTAAG +
Preference number: 3 (lower is better)
Translates to: RYDLHVMKSDRK*YAGVQAVSLSK
Trigger: CTTAGATAAGGAGACAGCCTGCACACCAGCATAGCACTTTCTGTCTGACTTCATCACATGTAAATCATATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp TTGCAAACAATAGAGCCAAAATCAGGTGGATATTTCTaGTTGTCAATATGTATTGGTGGCTGGGCACTTCAG +
Preference number: 3 (lower is better)
Translates to: LQTIEPKSGGYF*LSICIGGWALQ
Trigger: CTGAAGTGCCCAGCCACCAATACATATTGACAACCAGAAATATCCACCTGATTTTGGCTCTATTGTTTGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp CATGTCTGTCATGTTGGAAATTTCATTCTCTGGACATaGGGTACAATCAAAACAGCAGACAGCCTTTCCTTT +
Preference number: 3 (lower is better)
Translates to: HVCHVGNFILWT*GTIKTADSLSF
Trigger: AAAGGAAAGGCTGTCTGCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp TTGATCCATGTCTGTCATGTTGGAAATTTCATTCTCTaGACATGGGGTACAATCAAAACAGCAGACAGCCTT +
Preference number: 3 (lower is better)
Translates to: LIHVCHVGNFIL*TWGTIKTADSL
Trigger: AAGGCTGTCTGCTGTTTTGATTGTACCCCATGTCCAGAGAATGAAATTTCCAACATGACAGACATGGATCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACTTCCATGAGATCTTTTaGGCCATCTATCTACACACT +
Preference number: 3 (lower is better)
Translates to: DSHEILGDLGRSYRRERDFHEIF*AIYLHT
Trigger: AGTGTGTAGATAGATGGCCAAAAAGATCTCATGGAA...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTAGGAATGGTAGGTTTTaGAGAGAACTTACTGGGTTT +
Preference number: 3 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRRNGRF*RELTGF
Trigger: AAACCCAGTAAGTTCTCTCAAAAACCTACCATTCCT...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCTTATATTGCAAATATaGTCCCCTTTCCTTTTTCCC +
Preference number: 3 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLLILQI*SPFLFP
Trigger: GGGAAAAAGGAAAGGGGACAATATTTGCAATATAAG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGTTGCATTATCTTTTGTaGATTAGGTTCTTGTGCTGG +
Preference number: 3 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLLHYLL*IRFLCW
Trigger: CCAGCACAAGAACCTAATCAACAAAAGATAATGCAA...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGTGCATGCTATCTATTaGGTGGTCCAGTGTTTGAGA +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRVHAIY*VVQCLR
Trigger: TCTCAAACACTGGACCACCAAATAGATAGCATGCAC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp ATTTTGCTCTCTATATGGAATAGGTTATACAGGGCTTaGTGTAGTAAGAAAGCTAGGTTCTGTTGGTGCCAT +
Preference number: 3 (lower is better)
Translates to: ILLSIWNRLYRA*CSKKARFCWCH
Trigger: ATGGCACCAACAGAACCTAGCTTTCTTACTACAGCAAGCCCTGTATAACCTATTCCATATAGAGAGCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp GTCCTCTACTATTATGTACTCATATCAGCTGGTGCATaGTATCTATTTGGTGGTCCAGTGTTTGAGAGATAT +
Preference number: 3 (lower is better)
Translates to: VLYYYVLISAGA*YLFGGPVFERY
Trigger: ATATCTCTCAAACACTGGACCACCAAATAGATAGCATGCACCAGCTGATATGAGTACATAATAGTAGAGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GATCTTGGTAGATCATATAGAAGAGAGAGGGACATCTaGTCAGTGAAGAATTTAAAGGCAGTAAGAAGGTAC +
Preference number: 3 (lower is better)
Translates to: DLGRSYRRERDI*SVKNLKAVRRY
Trigger: GTACCTTCTTACTGCCTTTAAATTCTTCACTGACCAGATGTCCCTCTCTCTTCTATATGATCTACCAAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GTCTATAGATTGGTATGTCCAGTTACAGAGAATATCTaGATGGTGACAGTCATGAAATCCTTGGAGATCTTG +
Preference number: 3 (lower is better)
Translates to: VYRLVCPVTENI*MVTVMKSLEIL
Trigger: CAAGATCTCCAAGGATTTCATGACTGTCACCATCCAGATATTCTCTGTAACTGGACATACCAATCTATAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GGTGGATATTTCTGGTTGTCAATATGTATTGGTGGCTaGGCACTTCAGTGTTTAGTAACAGTCTTTAGTAAC +
Preference number: 3 (lower is better)
Translates to: GGYFWLSICIGG*ALQCLVTVFSN
Trigger: GTTACTAAAGACTGTTACTAAACACTGAAGTGCCCAGCCACCAATACATATTGACAACCAGAAATATCCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp GTTGCAGACAATGATGATGTGACCATGTTCAAAGTGTaGATCAGAATCAACAAATGGAGGAGATGTTCCTAT +
Preference number: 3 (lower is better)
Translates to: VADNDDVTMFKV*IRINKWRRCSY
Trigger: ATAGGAACATCTCCTCCATTTGTTGATTCTGATCCACACTTTGAACATGGTCACATCATCATTGTCTGCAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGTTAGAGCAGTCTTCTTaGGAGATAGGAAGGGATGAA +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRLEQSS*EIGRDE
Trigger: TTCATCCCTTCCTATCTCCAAAGAAGACTGCTCTAA...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGGTGGATATTTCTGGTaGTCAATATGTATTGGTGGC +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRGGYFW*SICIGG
Trigger: GCCACCAATACATATTGACAACCAGAAATATCCACC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGAAGGCTATACAGACTTaGTGTTTGTGCATCTCTCCT +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRKAIQT*CLCISP
Trigger: AGGAGAGATGCACAAACACAAAGTCTGTATAGCCTT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp AAGATCCATAGCATAGAGAATGTCATATTCTGTATCCAGTTTCCCTCTTCTGTAGGAATTATAAATTTGTaGTTCTCCAGGAAAGGGGCC +
Preference number: 3 (lower is better)
Translates to: KIHSIENVIFCIQFPSSVGIINL*FSRKGA
Trigger: GGCCCCTTTCCTGGAGAACAACAAATTTATAATTCC...TACAGAAGAGGGAAACTGGATACAGAATATGACATTCTCTATGCTATGGATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGCAATAACTGAACCCTaGTTGCAGACAATGATGATG +
Preference number: 3 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSAITEP*LQTMMM
Trigger: CATCATCATTGTCTGCAACAAGGGTTCAGTTATTGC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 72 bp GCAATAACTGAACCCTTGTTGCAGACAATGATGATGTaGCCATGTTCAAAGTGTGGATCAGAATCAACAAAT +
Preference number: 3 (lower is better)
Translates to: AITEPLLQTMMM*PCSKCGSESTN
Trigger: ATTTGTTGATTCTGATCCACACTTTGAACATGGTCACATCATCATTGTCTGCAACAAGGGTTCAGTTATTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp GCAGTGAGTTTGTTTTATGTTGGCATACTGATCATTTaGACACTTCACACATTGATCCATGTCTGTCATGTT +
Preference number: 3 (lower is better)
Translates to: AVSLFYVGILII*TLHTLIHVCHV
Trigger: AACATGACAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATAAAACAAACTCACTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACTTAGAGCAGTCTTCTTaGGAGATAGGAAGGGATGAA +
Preference number: 3 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYLEQSS*EIGRDE
Trigger: TTCATCCCTTCCTATCTCCAAAGAAGACTGCTCTAA...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp ATCTTGAAAGCCATTACTACAGTAATTGTTTTGGCCAAAATAGTGGAAACTGCTGTAAGTCTCCTTTACTaGTGTTCTCATCCCAATGTG +
Preference number: 3 (lower is better)
Translates to: ILKAITTVIVLAKIVETAVSLLY*CSHPNV
Trigger: CACATTGGGATGAGAACACAAGTAAAGGAGACTTAC...AGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 72 bp AATAAGGAAACCATTTATTTTGATTATATTCATCCCTaGTTCCTCTCCAATCTTTCCCACATGGCCAACCAC +
Preference number: 3 (lower is better)
Translates to: NKETIYFDYIHP*FLSNLSHMANH
Trigger: GTGGTTGGCCATGTGGGAAAGATTGGAGAGGAATCAGGGATGAATATAATCAAAATAAATGGTTTCCTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp AGGATATGTGCAAAGCTGGAACCTAGAATGAAGATATaGTTTACATGTGATGAAGTCAGACAGAAAGTGCTA +
Preference number: 3 (lower is better)
Translates to: RICAKLEPRMKI*FTCDEVRQKVL
Trigger: TAGCACTTTCTGTCTGACTTCATCACATGTAAATCATATCTTCATTCTAGGTTCCAGCTTTGCACATATCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp ATTCTGTATCCTGGTGTTCATACAGGTAACTCTCATTaGAGAAATTTGTACAGGAATGGTAGGTTTTTGAGA +
Preference number: 3 (lower is better)
Translates to: ILYPGVHTGNSH*RNLYRNGRFLR
Trigger: TCTCAAAAACCTACCATTCCTGTACAAATTTCTGCAATGAGAGTTACCTGTATGAACACCAGGATACAGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp ACATGTTTTATTCTACTGTTAAGTAACCCAGGCTTTTaGTTACGGCATTTGATCATAGCCATAGTAAGCCTA +
Preference number: 3 (lower is better)
Translates to: TCFILLLSNPGF*LRHLIIAIVSL
Trigger: TAGGCTTACTATGGCTATGATCAAATGCCGTAACCAAAAGCCTGGGTTACTTAACAGTAGAATAAAACATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CCA 72 bp GAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATaGAATAGGTTATACAGGGCTTGCTGTAGTAAGAAA +
Preference number: 3 (lower is better)
Translates to: EVGFKVRILLSI*NRLYRACCSKK
Trigger: TTTCTTACTACAGCAAGCCCTGTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGCTTCACATGTCCAAATaGATGACAGATAATGCAATC +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRLHMSK*MTDNAI
Trigger: GATTGCATTATCTGTCATCAATTTGGACATGTGAAG...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACTTCCATGAGATCTTTTaGGCCATCTATCTACACACT +
Preference number: 3 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYFHEIF*AIYLHT
Trigger: AGTGTGTAGATAGATGGCCAAAAAGATCTCATGGAA...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACATTGTTGATTAGGTTCTaGTGCTGGTCTTTCCCTAAT +
Preference number: 3 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTLLIRF*CWSFPN
Trigger: ATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGTTGAAGATATTTTCTaGACCTTTGAACTGGTAGTC +
Preference number: 3 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSVEDIF*TFELVV
Trigger: GACTACCAGTTCAAAGGTCAAGAAAATATCTTCAAC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGTTTAGCATTCTTTCCTaGTTCTGTGTGTTTACTGTG +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRFSILS*FCVFTV
Trigger: CACAGTAAACACACAGAACAAGGAAAGAATGCTAAA...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGAAGGAATTATAAATTaGTTGTTCTCCAGGAAAGGG +
Preference number: 3 (lower is better)
Translates to: VRKLGSVGAILHYLLLIREGIIN*LFSRKG
Trigger: CCCTTTCCTGGAGAACAACAAATTTATAATTCCTTC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR-3UTR CAA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGTTGAAGATATTTTCTaGACCTTTGAACTGGTAGTC +
Preference number: 3 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYVEDIF*TFELVV
Trigger: GACTACCAGTTCAAAGGTCAAGAAAATATCTTCAAC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR GCA 72 bp ATCATATTCACAAAGGCTATACAGACTTTGTGTTTGTaGATCTCTCCTCTCAACTTAAAGAGAAACTCAATG +
Preference number: 3 (lower is better)
Translates to: IIFTKAIQTLCL*ISPLNLKRNSM
Trigger: CATTGAGTTTCTCTTTAAGTTGAGAGGAGAGATGCACAAACACAAAGTCTGTATAGCCTTTGTGAATATGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp ATTTGTTTGATTGCAAACAATAGAGCCAAAATCAGGTaGATATTTCTGGTTGTCAATATGTATTGGTGGCTG +
Preference number: 3 (lower is better)
Translates to: ICLIANNRAKIR*IFLVVNMYWWL
Trigger: CAGCCACCAATACATATTGACAACCAGAAATATCCACCTGATTTTGGCTCTATTGTTTGCAATCAAACAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CCA 72 bp TCACAACTTTCTTTAGGCAGTGAGTTTGTTTTATGTTaGCATACTGATCATTTGGACACTTCACACATTGAT +
Preference number: 3 (lower is better)
Translates to: SQLSLGSEFVLC*HTDHLDTSHID
Trigger: ATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATAAAACAAACTCACTGCCTAAAGAAAGTTGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR TCA 72 bp CTTTTCAGTTTCATGAGTACCCGTTCATTAATTATTTaGGTTAGTACCCATGCCACAGGAAACATTTTCTTA +
Preference number: 3 (lower is better)
Translates to: LFSFMSTRSLII*VSTHATGNIFL
Trigger: TAAGAAAATGTTTCCTGTGGCATGGGTACTAACTCAAATAATTAATGAACGGGTACTCATGAAACTGAAAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR TCA 72 bp TCTTATTATGGTCCTCTTACTGTGTCCCAAATTTCCTaGACATTTTGTGTTAAAATCTCTTTGCAATTGGCA +
Preference number: 3 (lower is better)
Translates to: SYYGPLTVSQIS*TFCVKISLQLA
Trigger: TGCCAATTGCAAAGAGATTTTAACACAAAATGTTCAGGAAATTTGGGACACAGTAAGAGGACCATAATAAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCCAGACAATGATGATGTaGCCATGTTCAAAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPQTMMM*PCSKCG
Trigger: TCCACACTTTGAACATGGTCACATCATCATTGTCTG...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCCCTTTCCTTTCTGAATaGATTTTCGGAATCCTACAC +
Preference number: 4 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPPFLSE*IFGILH
Trigger: GTGTAGGATTCCGAAAATTCATTCAGAAAGGAAAGG...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCACCATGTTCAAAGTGTaGATCAGAATCAACAAATGG +
Preference number: 4 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPTMFKV*IRINKW
Trigger: CCATTTGTTGATTCTGATCCACACTTTGAACATGGT...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
3UTR CAA 72 bp GAACCCATGTCTGCTTGCCTCTATCGGGCACCAGCATaGGAGCACGGTTCTTTCCTGTATCCTTTGTTAGAG +
Preference number: 4 (lower is better)
Translates to: EPMSACLYRAPA*EHGSFLYPLLE
Trigger: CTCTAACAAAGGATACAGGAAAGAACCGTGCTCCAATGCTGGTGCCCGATAGAGGCAAGCAGACATGGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR GCA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATTCCACAACCACCATTaGCTTTCCCTTGGTGCTATG +
Preference number: 4 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRFHNHH*LSLGAM
Trigger: CATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAA...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR GCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTCCACAACCACCATTaGCTTTCCCTTGGTGCTATG +
Preference number: 4 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEFHNHH*LSLGAM
Trigger: CATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGGGTGCTATGGTAGACTaGGAGAAAAGTAATCCACAC +
Preference number: 4 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQGAMVD*EKSNPH
Trigger: GTGTGGATTACTTTTCTCCCAGTCTACCATAGCACC...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR GCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTTTGCCTTTCCCTTGGTaGTATGGTAGACTGGGAGAA +
Preference number: 4 (lower is better)
Translates to: QVGECVHWALTEVYRLVCLPFPW*YGRLGE
Trigger: TTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAA...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTGGAATGGCCCAAGTATaGCAGATGAAAACCACCTTG +
Preference number: 4 (lower is better)
Translates to: QVGECVHWALTEVYRLVCGMAQV*QMKTTL
Trigger: CAAGGTGGTTTTCATCTGCCATACTTGGGCCATTCC...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCCACTAAGGCCGTCATaGCCAGGGTCAGAAATGTGT +
Preference number: 4 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLPLRPS*PGSEMC
Trigger: ACACATTTCTGACCCTGGCCATGACGGCCTTAGTGG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
3UTR CAA 72 bp GCACCAGCATTGGAGCACGGTTCTTTCCTGTATCCTTaGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGAT +
Preference number: 4 (lower is better)
Translates to: APALEHGSFLYP*LEQSSLEIGRD
Trigger: ATCCCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTGCTCCAATGCTGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp GGAGAGGATGAAATGGCCCATAGTAAAGCTGTGGTATaGCAAAGATGTGTAGGAATGGCCCAAGTATGGCAG +
Preference number: 4 (lower is better)
Translates to: GEDEMAHSKAVV*QRCVGMAQVWQ
Trigger: CTGCCATACTTGGGCCATTCCTACACATCTTTGCAATACCACAGCTTTACTATGGGCCATTTCATCCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR TCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACACTTGGCTCGCTCATTaGCACTTCAAACTGGTGCCT +
Preference number: 4 (lower is better)
Translates to: DSHEILGDLGRSYRRERDTWLAH*HFKLVP
Trigger: AGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGT...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGTTCTCCAAAAGCACTTaGGATGTGCTACACTCAAAA +
Preference number: 4 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEFSKST*DVLHSK
Trigger: TTTTGAGTGTAGCACATCCCAAGTGCTTTTGGAGAA...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp GAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGATTGACACTTCAAACTaGTGCCTGGATAACCATTCT +
Preference number: 4 (lower is better)
Translates to: EYWSWGLTHVPSYQSFWEIDTSN*CLDNHS
Trigger: AGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAAT...CTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR GCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACTTGCCTTTCCCTTGGTaGTATGGTAGACTGGGAGAA +
Preference number: 4 (lower is better)
Translates to: DSHEILGDLGRSYRRERDLPFPW*YGRLGE
Trigger: TTCTCCCAGTCTACCATAGCACCAAGGGAAAGGCAA...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTAGAGCCAAAATCAGGTaGATATTTCTGGTTGTCAAT +
Preference number: 4 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLRAKIR*IFLVVN
Trigger: ATTGACAACCAGAAATATCCACCTGATTTTGGCTCT...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTCAGAAATGTGTTCTTTaGAGACATCTGGTACAGATA +
Preference number: 4 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLQKCVL*RHLVQI
Trigger: TATCTGTACCAGATGTCTCCAAAGAACACATTTCTG...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CCA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTACCATGTTCAAAGTGTaGATCAGAATCAACAAATGG +
Preference number: 4 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLTMFKV*IRINKW
Trigger: CCATTTGTTGATTCTGATCCACACTTTGAACATGGT...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGGTGCTATGGTAGACTaGGAGAAAAGTAATCCACAC +
Preference number: 4 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRGAMVD*EKSNPH
Trigger: GTGTGGATTACTTTTCTCCCAGTCTACCATAGCACC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTACAATGAGATGGCAATaGACAGTTGAAATACAGCCA +
Preference number: 4 (lower is better)
Translates to: QVGECVHWALTEVYRLVCTMRWQ*TVEIQP
Trigger: TGGCTGTATTTCAACTGTTCATTGCCATCTCATTGT...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
3UTR CAA 72 bp AGACAGCATTGTATAGGTTGTAACTTGGCTCGCTCATaGACACTTCAAACTGGTGCCTGGATAACCATTCTA +
Preference number: 4 (lower is better)
Translates to: RQHCIGCNLARS*TLQTGAWITIL
Trigger: TAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGTTACAACCTATACAATGCTGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR TCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGGAATTTGGCTTCATTaGATCTATCAGGCAGATTTC +
Preference number: 4 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRGIWLH*IYQADF
Trigger: GAAATCTGCCTGATAGATTCAATGAAGCCAAATTCC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp AACTTGGCTCGCTCATTGACACTTCAAACTGGTGCCTGGATAACCATTCTAGTATTCTCCAAAAGCACTTaGGATGTGCTACACTCAAAA +
Preference number: 4 (lower is better)
Translates to: NLARSLTLQTGAWITILVFSKST*DVLHSK
Trigger: TTTTGAGTGTAGCACATCCCAAGTGCTTTTGGAGAA...TACTAGAATGGTTATCCAGGCACCAGTTTGAAGTGTCAATGAGCGAGCCAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR CCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCCACAAAGTATAAGTTaGATCATGGTGCAGATGGGA +
Preference number: 4 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLPQSIS*IMVQMG
Trigger: TCCCATCTGCACCATGATCCAACTTATACTTTGTGG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
3UTR CAA 72 bp ACAGAGAATATCTGGATGGTGACAGTCATGAAATCCTaGGAGATCTTGGTAGATCATATAGAAGAGAGAGGG +
Preference number: 4 (lower is better)
Translates to: TENIWMVTVMKS*EILVDHIEERG
Trigger: CCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTCACCATCCAGATATTCTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp ATTATGTACTCATATCAGCTGGTGCATGCTATCTATTaGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCA +
Preference number: 4 (lower is better)
Translates to: IMYSYQLVHAIY*VVQCLRDIRGP
Trigger: TGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATAGCATGCACCAGCTGATATGAGTACATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGTATCTGGATTTCCATTaGAAGGATCATTCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRYLDFH*KDHSVV
Trigger: CACTACTGAATGATCCTTTCAATGGAAATCCAGATA...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACTTCAGTGTCTTACAATaGGATGGCAATGAACAGTTG +
Preference number: 4 (lower is better)
Translates to: DSHEILGDLGRSYRRERDFSVLQ*DGNEQL
Trigger: CAACTGTTCATTGCCATCTCATTGTAAGACACTGAA...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR TCA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGCCTTTCCTTTCTGAATaGATTTTCGGAATCCTACAC +
Preference number: 4 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLPFLSE*IFGILH
Trigger: GTGTAGGATTCCGAAAATTCATTCAGAAAGGAAAGG...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACACAGCCTTTCCTTTCTaGATGAATTTTCGGAATCCT +
Preference number: 4 (lower is better)
Translates to: DSHEILGDLGRSYRRERDTAFPF*MNFRNP
Trigger: AGGATTCCGAAAATTCATTCAGAAAGGAAAGGCTGT...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTGGAATTTGGCTTCATTaGATCTATCAGGCAGATTTC +
Preference number: 4 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRGIWLH*IYQADF
Trigger: GAAATCTGCCTGATAGATTCAATGAAGCCAAATTCC...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTGAGTTTGTTTTATGTTaGCATACTGATCATTTGGAC +
Preference number: 4 (lower is better)
Translates to: QVGECVHWALTEVYRLVCEFVLC*HTDHLD
Trigger: GTCCAAATGATCAGTATGCCAACATAAAACAAACTC...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGATCAGAATCAACAAATaGAGGAGATGTTCCTATCCA +
Preference number: 4 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRIRINK*RRCSYP
Trigger: TGGATAGGAACATCTCCTCCATTTGTTGATTCTGAT...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACTATCTGGATTTCCATTaGAAGGATCATTCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: DSHEILGDLGRSYRRERDYLDFH*KDHSVV
Trigger: CACTACTGAATGATCCTTTCAATGGAAATCCAGATA...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGGAATGGCCCAAGTATaGCAGATGAAAACCACCTTG +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTGMAQV*QMKTTL
Trigger: CAAGGTGGTTTTCATCTGCCATACTTGGGCCATTCC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
3UTR CAA 72 bp ATTATTTATAGAGCAGGAACAAGTGGCAAGAAAATATaGGAACAATGCACGCTGAGCCTGTGCTATATTGGG +
Preference number: 4 (lower is better)
Translates to: IIYRAGTSGKKI*EQCTLSLCYIG
Trigger: CCCAATATAGCACAGGCTCAGCGTGCATTGTTCCAATATTTTCTTGCCACTTGTTCCTGCTCTATAAATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp GGTGCCATATTGCATTATCTTTTGTTGATTAGGTTCTaGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGG +
Preference number: 4 (lower is better)
Translates to: GAILHYLLLIRF*CWSFPNSGCIW
Trigger: CCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp GCTGTAGTAAGAAAGCTAGGTTCTGTTGGTGCCATATaGCATTATCTTTTGTTGATTAGGTTCTTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: AVVRKLGSVGAI*HYLLLIRFLCW
Trigger: CCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTACTACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp GGCAGTGAGTTTGTTTTATGTTGGCATACTGATCATTaGGACACTTCACACATTGATCCATGTCTGTCATGT +
Preference number: 4 (lower is better)
Translates to: GSEFVLCWHTDH*DTSHIDPCLSC
Trigger: ACATGACAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATAAAACAAACTCACTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CAA 72 bp GAGAAGTCGGTTATTCGCCTTGACAATGGGATTGTCTaGGTGTTTCAAAAGGATACTGAGTATAACAGTTGT +
Preference number: 4 (lower is better)
Translates to: EKSVIRLDNGIV*VFQKDTEYNSC
Trigger: ACAACTGTTATACTCAGTATCCTTTTGAAACACCAAGACAATCCCATTGTCAAGGCGAATAACCGACTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CAA 72 bp AGGAGATGTTCCTATCCATGTTCCACAAAGTATAAGTaGGATCATGGTGCAGATGGGAATGATATAGTTAGG +
Preference number: 4 (lower is better)
Translates to: RRCSYPCSTKYK*DHGADGNDIVR
Trigger: CCTAACTATATCATTCCCATCTGCACCATGATCCAACTTATACTTTGTGGAACATGGATAGGAACATCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAATGGCAATGAACAGTTaGAATACAGCCACCACAACC +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTMAMNS*NTATTT
Trigger: GGTTGTGGTGGCTGTATTTCAACTGTTCATTGCCAT...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
3UTR CAA 72 bp CTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTaGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCT +
Preference number: 4 (lower is better)
Translates to: LGSVGAILHYLL*IRFLCWSFPNS
Trigger: AGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp AAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTaGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAAT +
Preference number: 4 (lower is better)
Translates to: KLGSVGAILHYL*LIRFLCWSFPN
Trigger: ATTAGGGAAAGACCAGCACAAGAACCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
3UTR CAA 72 bp TTCTTTTCCAATATCCTTCTGCCAATGTTCTGTATGTaGAATAAGCATTTCATGGAGTGCATAGGCTACAGC +
Preference number: 4 (lower is better)
Translates to: FFSNILLPMFCM*NKHFMECIGYS
Trigger: GCTGTAGCCTATGCACTCCATGAAATGCTTATTCAACATACAGAACATTGGCAGAAGGATATTGGAAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR TCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGACAGCCTTTCCTTTCTaGATGAATTTTCGGAATCCT +
Preference number: 4 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRTAFPF*MNFRNP
Trigger: AGGATTCCGAAAATTCATTCAGAAAGGAAAGGCTGT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGTAGAATGCAATAACTaGACCCTTGTTGCAGACAAT +
Preference number: 4 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSVECNN*TLVADN
Trigger: ATTGTCTGCAACAAGGGTTCAGTTATTGCATTCTAC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR GCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGCAGACTTTGTGTTTGTaGATCTCTCCTCTCAACTTA +
Preference number: 4 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRQTLCL*ISPLNL
Trigger: TAAGTTGAGAGGAGAGATGCACAAACACAAAGTCTG...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCACCATGTCTGTCATGTTaGAAATTTCATTCTCTGGAC +
Preference number: 4 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSPCLSC*KFHSLD
Trigger: GTCCAGAGAATGAAATTTCCAACATGACAGACATGG...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACACCACAAAGTATAAGTTaGATCATGGTGCAGATGGGA +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTPQSIS*IMVQMG
Trigger: TCCCATCTGCACCATGATCCAACTTATACTTTGTGG...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
3UTR CAA 72 bp TATGTTGGCATACTGATCATTTGGACACTTCACACATaGATCCATGTCTGTCATGTTGGAAATTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: YVGILIIWTLHT*IHVCHVGNFIL
Trigger: GAGAATGAAATTTCCAACATGACAGACATGGATCAATGTGTGAAGTGTCCAAATGATCAGTATGCCAACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR TCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGTAGAATGCAATAACTaGACCCTTGTTGCAGACAAT +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTVECNN*TLVADN
Trigger: ATTGTCTGCAACAAGGGTTCAGTTATTGCATTCTAC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACATTCTCCAAAAGCACTTaGGATGTGCTACACTCAAAA +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTFSKST*DVLHSK
Trigger: TTTTGAGTGTAGCACATCCCAAGTGCTTTTGGAGAA...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAAGAGCCAAAATCAGGTaGATATTTCTGGTTGTCAAT +
Preference number: 4 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSRAKIR*IFLVVN
Trigger: ATTGACAACCAGAAATATCCACCTGATTTTGGCTCT...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACGAAGGGTGCACTGTCTaGATGAATTTCTTAAAACCA +
Preference number: 4 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYEGCTV*MNFLKP
Trigger: TGGTTTTAAGAAATTCATCCAGACAGTGCACCCTTC...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CCA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGGGAAATTTCATTCTCTaGACATGGGGTACAATCAAA +
Preference number: 4 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRGNFIL*TWGTIK
Trigger: TTTGATTGTACCCCATGTCCAGAGAATGAAATTTCC...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR TCA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACTATCTGGATTTCCATTaGAAGGATCATTCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYYLDFH*KDHSVV
Trigger: CACTACTGAATGATCCTTTCAATGGAAATCCAGATA...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044583.10
ENSMUST00000232823.2
ENSMUST00000233469.2
CDS-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGGAAATTTCATTCTCTaGACATGGGGTACAATCAAA +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTGNFIL*TWGTIK
Trigger: TTTGATTGTACCCCATGTCCAGAGAATGAAATTTCC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
3UTR CAA 72 bp TCAGTGATCTTGAAAGCCATTACTACAGTAATTGTTTaGGCCAAAATAGTGGAAACTGCTACAGTGAAAACA +
Preference number: 4 (lower is better)
Translates to: SVILKAITTVIV*AKIVETATVKT
Trigger: TGTTTTCACTGTAGCAGTTTCCACTATTTTGGCCAAAACAATTACTGTAGTAATGGCTTTCAAGATCACTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
3UTR CAA 72 bp ATTATCATATTCACAAAGGCTATACAGACTTTGTGTTaGTGCATCTCTCCTCTCAACTTAAAGAGAAACTCA +
Preference number: 4 (lower is better)
Translates to: IIIFTKAIQTLC*CISPLNLKRNS
Trigger: TGAGTTTCTCTTTAAGTTGAGAGGAGAGATGCACAAACACAAAGTCTGTATAGCCTTTGTGAATATGATAAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232823.2
CDS-3UTR CCA 90 bp TTTCCATTTTCCTTTTCCAGTGTTGGCTCCATTTGTGAGTTCTTTAATGTTACAGAGTTTGTTTTATGTTaGCATACTGATCATTTGGAC +
Preference number: 4 (lower is better)
Translates to: FPFSFSSVGSICEFFNVTEFVLC*HTDHLD
Trigger: GTCCAAATGATCAGTATGCCAACATAAAACAAACTC...TGTAACATTAAAGAACTCACAAATGGAGCCAACACTGGAAAAGGAAAATGGAAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CTGCTCCACACCCCATACCTCCTCTCCAACCCCCTGTCTCCACATGGATGTCCCTTTCCACAACCACCATaGCCTTTCCCTTGGTGCTAT +
Preference number: 5 (lower is better)
Translates to: LLHTPYLLSNPLSPHGCPFPQPP*PFPWCY
Trigger: ATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA...GGGACATCCATGTGGAGACAGGGGGTTGGAGAGGAGGTATGGGGTGTGGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATCCACAAAGTATAAGTaGGATCATGGTGCAGATGGG +
Preference number: 5 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRSTKYK*DHGADG
Trigger: CCCATCTGCACCATGATCCAACTTATACTTTGTGGA...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTTTCCACAACCACCATaGCCTTTCCCTTGGTGCTAT +
Preference number: 5 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLFPQPP*PFPWCY
Trigger: ATAGCACCAAGGGAAAGGCAATGGTGGTTGTGGAAA...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GGTGGTGTGAGTATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTGCCTTGACAATGGGATaGTCTTGGTGTTTCAAAAGG +
Preference number: 5 (lower is better)
Translates to: GGVSIGVGVSPMSLVISLALTMG*SWCFKR
Trigger: CCTTTTGAAACACCAAGACAATCCCATTGTCAAGGC...AAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAATACTCACACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp ATTGGAGTTGGGGTCTCACCCATGTCCCTAGTTATCAGTCTTTCTGGGAGGCAGTCAGAAATGTGTTCTTaGGAGACATCTGGTACAGAT +
Preference number: 5 (lower is better)
Translates to: IGVGVSPMSLVISLSGRQSEMCS*ETSGTD
Trigger: ATCTGTACCAGATGTCTCCAAAGAACACATTTCTGA...CTGCCTCCCAGAAAGACTGATAACTAGGGACATGGGTGAGACCCCAACTCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGATCCATGTCTGTCATGTaGGAAATTTCATTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWRSMSVM*EISFSG
Trigger: TCCAGAGAATGAAATTTCCAACATGACAGACATGGA...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CAGGTTGGGGAATGTGTACATTGGGCCCTGACAGAAGTCTATAGATTGGTATGTGATGGCAATGAACAGTaGAAATACAGCCACCACAAC +
Preference number: 5 (lower is better)
Translates to: QVGECVHWALTEVYRLVCDGNEQ*KYSHHN
Trigger: GTTGTGGTGGCTGTATTTCAACTGTTCATTGCCATC...ACATACCAATCTATAGACTTCTGTCAGGGCCCAATGTACACATTCCCCAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CAA 90 bp GGGATGAATTTTGAGGTAGCAGGCATGTCAGTCTGCCACTGGTGCAGATGGAGAGAAGGAATTATAAATTaGTTGTTCTCCAGGAAAGGG +
Preference number: 5 (lower is better)
Translates to: GMNFEVAGMSVCHWCRWREGIIN*LFSRKG
Trigger: CCCTTTCCTGGAGAACAACAAATTTATAATTCCTTC...TCTCCATCTGCACCAGTGGCAGACTGACATGCCTGCTACCTCAAAATTCATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGAGTCGGTTATTCGCCTaGACAATGGGATTGTCTTGG +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRSRLFA*TMGLSW
Trigger: CCAAGACAATCCCATTGTCAAGGCGAATAACCGACT...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACAGTCGGTTATTCGCCTaGACAATGGGATTGTCTTGG +
Preference number: 5 (lower is better)
Translates to: DSHEILGDLGRSYRRERDSRLFA*TMGLSW
Trigger: CCAAGACAATCCCATTGTCAAGGCGAATAACCGACT...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGTCCACAAAGTATAAGTaGGATCATGGTGCAGATGGG +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRSTKYK*DHGADG
Trigger: CCCATCTGCACCATGATCCAACTTATACTTTGTGGA...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGGAATTATAAATTTGTaGTTCTCCAGGAAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRGIINL*FSRKGA
Trigger: GGCCCCTTTCCTGGAGAACAACAAATTTATAATTCC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACGCCTTGACAATGGGATaGTCTTGGTGTTTCAAAAGG +
Preference number: 5 (lower is better)
Translates to: DSHEILGDLGRSYRRERDALTMG*SWCFKR
Trigger: CCTTTTGAAACACCAAGACAATCCCATTGTCAAGGC...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGGCAATAACTGAACCCTaGTTGCAGACAATGATGATG +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRAITEP*LQTMMM
Trigger: CATCATCATTGTCTGCAACAAGGGTTCAGTTATTGC...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp TATCTATTTGGTGGTCCAGTGTTTGAGAGATATCAGAGGTCCACATTGAGACTGGGAATTATAAATTTGTaGTTCTCCAGGAAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: YLFGGPVFERYQRSTLRLGIINL*FSRKGA
Trigger: GGCCCCTTTCCTGGAGAACAACAAATTTATAATTCC...CAGTCTCAATGTGGACCTCTGATATCTCTCAAACACTGGACCACCAAATAGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGTCCATGTCTGTCATGTaGGAAATTTCATTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRSMSVM*EISFSG
Trigger: TCCAGAGAATGAAATTTCCAACATGACAGACATGGA...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CACGGTTCTTTCCTGTATCCTTTGTTAGAGCAGTCTTCTTTGGAGATAGGAAGGCTTGGATCAGTGATCTaGAAAGCCATTACTACAGTA +
Preference number: 5 (lower is better)
Translates to: HGSFLYPLLEQSSLEIGRLGSVI*KAITTV
Trigger: TACTGTAGTAATGGCTTTCAAGATCACTGATCCAAG...CCTTCCTATCTCCAAAGAAGACTGCTCTAACAAAGGATACAGGAAAGAACCGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp GACAGTCATGAAATCCTTGGAGATCTTGGTAGATCATATAGAAGAGAGAGGGACGCAATAACTGAACCCTaGTTGCAGACAATGATGATG +
Preference number: 5 (lower is better)
Translates to: DSHEILGDLGRSYRRERDAITEP*LQTMMM
Trigger: CATCATCATTGTCTGCAACAAGGGTTCAGTTATTGC...GTCCCTCTCTCTTCTATATGATCTACCAAGATCTCCAAGGATTTCATGACTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp TTGTTGATTAGGTTCTTGTGCTGGTCTTTCCCTAATTCTGGTTGTATCTGGCGTCCAATGTTCTGTATGTaGAATAAGCATTTCATGGAG +
Preference number: 5 (lower is better)
Translates to: LLIRFLCWSFPNSGCIWRPMFCM*NKHFME
Trigger: CTCCATGAAATGCTTATTCAACATACAGAACATTGG...ACGCCAGATACAACCAGAATTAGGGAAAGACCAGCACAAGAACCTAATCAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CAA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGTAAGTCTCCTTTACTaGTGTTCTCATCCCAATGTG +
Preference number: 5 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSVSLLY*CSHPNV
Trigger: CACATTGGGATGAGAACACAAGTAAAGGAGACTTAC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CAA 90 bp GTAAGAAAGCTAGGTTCTGTTGGTGCCATATTGCATTATCTTTTGTTGATTAGGAGTAAAGCTGTGGTATaGCAAAGATGTGTAGGAATG +
Preference number: 5 (lower is better)
Translates to: VRKLGSVGAILHYLLLIRSKAVV*QRCVGM
Trigger: CATTCCTACACATCTTTGCAATACCACAGCTTTACT...CCTAATCAACAAAAGATAATGCAATATGGCACCAACAGAACCTAGCTTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044583.10
CDS-3UTR CAA 90 bp GTACTAGATTTTCATATGACTTCTCAAATGGCCTTTAGTGGTAGTTTCCTCTCAGAAGGAATTATAAATTaGTTGTTCTCCAGGAAAGGG +
Preference number: 5 (lower is better)
Translates to: VLDFHMTSQMAFSGSFLSEGIIN*LFSRKG
Trigger: CCCTTTCCTGGAGAACAACAAATTTATAATTCCTTC...TGAGAGGAAACTACCACTAAAGGCCATTTGAGAAGTCATATGAAAATCTAGTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS-3UTR CAA 90 bp CATGAGGTAGGATTTAAGGTCAGAATTTTGCTCTCTATATGGAATAGGTTATACCTTGGATCAGTGATCTaGAAAGCCATTACTACAGTA +
Preference number: 5 (lower is better)
Translates to: HEVGFKVRILLSIWNRLYLGSVI*KAITTV
Trigger: TACTGTAGTAATGGCTTTCAAGATCACTGATCCAAG...GTATAACCTATTCCATATAGAGAGCAAAATTCTGACCTTAAATCCTACCTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS CAA 72 bp ATTTGTTGTTCTCCAGGAAAGGGGCCACCTGTGGTATaGCAAAGATGTGTAGGAATGGCCCAAGTATGGCAG +
Preference number: 6 (lower is better)
Translates to: ICCSPGKGPPVV*QRCVGMAQVWQ
Trigger: CTGCCATACTTGGGCCATTCCTACACATCTTTGCAATACCACAGGTGGCCCCTTTCCTGGAGAACAACAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233469.2
CDS TCA 72 bp TATTTCTGGTTGTCAATAAAATATCTGGATTTCCATTaGAAGGATCATTCAGTAGTGGACCCTGTCTTGTAT +
Preference number: 6 (lower is better)
Translates to: YFWLSIKYLDFH*KDHSVVDPVLY
Trigger: ATACAAGACAGGGTCCACTACTGAATGATCCTTTCAATGGAAATCCAGATATTTTATTGACAACCAGAAATA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2
CDS CAA 72 bp ATATTTCTGGTTGTCAATAAAATATCTGGATTTCCATaGAAAGGATCATTCAGTAGTGGACCCTGTCTTGTA +
Preference number: 6 (lower is better)
Translates to: IFLVVNKISGFP*KGSFSSGPCLV
Trigger: TACAAGACAGGGTCCACTACTGAATGATCCTTTCAATGGAAATCCAGATATTTTATTGACAACCAGAAATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044583.10
ENSMUST00000233469.2