RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R56 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090762

Ensembl transcript IDs: ENSMUST00000163852.2, ENSMUST00000233304.2, ENSMUST00000233373.2, ENSMUST00000233874.2, ENSMUST00000233902.2

Found 502 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATGGTCTCTaGTGTGGCTCGAGTACTGCTCCTTGGGGCACAGAAGACATCTCT +
Preference number: 1 (lower is better)
Translates to: PQRPGRSLSWAGNGL*CGSSTAPWGTEDIS
Trigger: AGAGATGTCTTCTGTGCCCCAAGGAGCAGTACTCGAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 90 bp AGTGGTTCCTCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATaGTCTCTGGTGTGGCTCGAGTACTGCTCCTTGGGGCACAGAAGA +
Preference number: 1 (lower is better)
Translates to: SGSSKARKISVLGRQ*SLVWLEYCSLGHRR
Trigger: TCTTCTGTGCCCCAAGGAGCAGTACTCGAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGAGGAACCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 90 bp CCAGGACAGCCAGACCAGCCAGCAAGAGTGCTACCAAAGCCAATATaGATCCCAGTGGTTCCTCAAAGGCCAGGAAGATCTCTGTCCTGG +
Preference number: 1 (lower is better)
Translates to: PGQPDQPARVLPKPI*IPVVPQRPGRSLSW
Trigger: CCAGGACAGAGATCTTCCTGGCCTTTGAGGAACCACTGGGATTCATATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTGGCTGTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 90 bp GGCACCAGAACCATCATGGCATTGGATGACAATGTGCTGGGGCTCTaGGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCA +
Preference number: 1 (lower is better)
Translates to: GTRTIMALDDNVLGL*EHILVWEWWEGGQP
Trigger: TGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 90 bp CATCTGCCAATTACAGGAAGGATGACAATGGGCCTGACTGTCTCCTaGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAG +
Preference number: 1 (lower is better)
Translates to: HLPITGRMTMGLTVS*GTCKSKSSCGQDAQ
Trigger: CTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAGTCAGGCCCATTGTCATCCTTCCTGTAATTGGCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp GTCAGACTTCCTGAGAGTCAAGCTGCCTTTGGGACCCTGAGATCTTaGTGTGACCAAGCTCCTGGGATCATGGGTGTGTTAGAGCACCTG +
Preference number: 1 (lower is better)
Translates to: VRLPESQAAFGTLRS*CDQAPGIMGVLEHL
Trigger: CAGGTGCTCTAACACACCCATGATCCCAGGAGCTTGGTCACATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTCTCAGGAAGTCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp GTATGTTCAGAGCTCCGGCTCAAACCAGAAAGAACCCAATGCCACTaGTCAGGCAGGGTTCCTATGTTCCTGGATCCCACTGGTACCAGT +
Preference number: 1 (lower is better)
Translates to: VCSELRLKPERTQCH*SGRVPMFLDPTGTS
Trigger: ACTGGTACCAGTGGGATCCAGGAACATAGGAACCCTGCCTGACCAGTGGCATTGGGTTCTTTCTGGTTTGAGCCGGAGCTCTGAACATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp CAGACCAGCCAGCAAGAGTGCTACCAAAGCCAATATGAATCCCAGTaGTTCCTCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATG +
Preference number: 1 (lower is better)
Translates to: QTSQQECYQSQYESQ*FLKGQEDLCPGQAM
Trigger: CATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGAGGAACCACTGGGATTCATATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR GCA 90 bp CAGAAGAAGGTGGCACCAGAACCATCATGGCATTGGATGACAATGTaGTGGGGCTCTGAGAGCATATCCTTGTCTGGGAATGGTGGGAAG +
Preference number: 1 (lower is better)
Translates to: QKKVAPEPSWHWMTM*WGSESISLSGNGGK
Trigger: CTTCCCACCATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGCCACCTTCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 90 bp AAGAAGGTGGCACCAGAACCATCATGGCATTGGATGACAATGTGCTaGGGCTCTGAGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTG +
Preference number: 1 (lower is better)
Translates to: KKVAPEPSWHWMTMC*GSESISLSGNGGKV
Trigger: CACCTTCCCACCATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGCCACCTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 90 bp CCAGTTGGTGGGGCAGTGAAATCAGAGGGTGTACCATCAGAGAAGTaGAAGATGGAGAAGCTACCCCCAACAATTACATCTCCAGGACGG +
Preference number: 1 (lower is better)
Translates to: PVGGAVKSEGVPSEK*KMEKLPPTITSPGR
Trigger: CCGTCCTGGAGATGTAATTGTTGGGGGTAGCTTCTCCATCTTTCACTTCTCTGATGGTACACCCTCTGATTTCACTGCCCCACCAACTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp CCCAACAATTACATCTCCAGGACGGTCAAAATGAGGGCTCTGTCTTaGCAATATCCAGGCTCTTGGTCCAGAAAGGTCAGACCCAGAGAG +
Preference number: 1 (lower is better)
Translates to: PNNYISRTVKMRALS*QYPGSWSRKVRPRE
Trigger: CTCTCTGGGTCTGACCTTTCTGGACCAAGAGCCTGGATATTGCCAAGACAGAGCCCTCATTTTGACCGTCCTGGAGATGTAATTGTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp TGGCCAACCACACCCCACAGAGAACAACCTGTATTAAGGAAGCAATaGGGACCACTAAGGTTGAAGTACCAGGGCTCAGGCATATCTGGA +
Preference number: 1 (lower is better)
Translates to: WPTTPHREQPVLRKQ*GPLRLKYQGSGISG
Trigger: TCCAGATATGCCTGAGCCCTGGTACTTCAACCTTAGTGGTCCTCATTGCTTCCTTAATACAGGTTGTTCTCTGTGGGGTGTGGTTGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 90 bp TCTCTTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTCTaGTTTCCTGCTGTTGGAGGAAATGAACTACAATTATTCTCTTCA +
Preference number: 1 (lower is better)
Translates to: SLTHPLPLLGPGVPL*FPAVGGNELQLFSS
Trigger: TGAAGAGAATAATTGTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp AGGACGGTCAAAATGAGGGCTCTGTCTTGGCAATATCCAGGCTCTTaGTCCAGAAAGGTCAGACCCAGAGAGACAGACAAAGAAAGCAAA +
Preference number: 1 (lower is better)
Translates to: RTVKMRALSWQYPGS*SRKVRPRETDKESK
Trigger: TTTGCTTTCTTTGTCTGTCTCTCTGGGTCTGACCTTTCTGGACCAAGAGCCTGGATATTGCCAAGACAGAGCCCTCATTTTGACCGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 90 bp AGAAGCAGCTCTGTAAAATTGTCCTCTGATTCCCCATGTAAGCCATaGCATGCTCATGCATATGAAAGCACACATGAGTGCACACAAATG +
Preference number: 1 (lower is better)
Translates to: RSSSVKLSSDSPCKP*HAHAYESTHECTQM
Trigger: CATTTGTGTGCACTCATGTGTGCTTTCATATGCATGAGCATGGCATGGCTTACATGGGGAATCAGAGGACAATTTTACAGAGCTGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp CAGAGTGTACAATTCATCCATTTACATTATGCAGTTTTCCAGGGATaGGAGCAATGTCCCAAGCTTCTGACCTTTAGGCTAAACTCCTCC +
Preference number: 1 (lower is better)
Translates to: QSVQFIHLHYAVFQG*EQCPKLLTFRLNSS
Trigger: GGAGGAGTTTAGCCTAAAGGTCAGAAGCTTGGGACATTGCTCCCATCCCTGGAAAACTGCATAATGTAAATGGATGAATTGTACACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp CCCTTAACAAGCAAAGGTACCCTGATGACCCCAATTAAATCCCACTaGATGGAGGGAGTACTCACTTCTACAACTCACTTCTACAACTTA +
Preference number: 1 (lower is better)
Translates to: PLTSKGTLMTPIKSH*MEGVLTSTTHFYNL
Trigger: TAAGTTGTAGAAGTGAGTTGTAGAAGTGAGTACTCCCTCCATTCAGTGGGATTTAATTGGGGTCATCAGGGTACCTTTGCTTGTTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp TTTCCATGCTTACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTaGGCTCCCCTTTCCAAGTTTCTTAACTGTGATGACTTTCGGCAA +
Preference number: 1 (lower is better)
Translates to: FPCLLARIFAHCAIF*APLSKFLNCDDFRQ
Trigger: TTGCCGAAAGTCATCACAGTTAAGAAACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 90 bp TGTGAGAATTGGCTTCTGATGATGCCAAGTAACCTTGGTTTTTGTTaGTTATGTTCTTATATGCTTGCCTCCTGCCATCTGGTTATCGCT +
Preference number: 1 (lower is better)
Translates to: CENWLLMMPSNLGFC*LCSYMLASCHLVIA
Trigger: AGCGATAACCAGATGGCAGGAGGCAAGCATATAAGAACATAAGCAACAAAAACCAAGGTTACTTGGCATCATCAGAAGCCAATTCTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp CCCCTTTCCAAGTTTCTTAACTGTGATGACTTTCGGCAATACATATaGACAGGACAGTCAGTGACCATCTATATGTCCACTCTAAACATA +
Preference number: 1 (lower is better)
Translates to: PLSKFLNCDDFRQYI*TGQSVTIYMSTLNI
Trigger: TATGTTTAGAGTGGACATATAGATGGTCACTGACTGTCCTGTCCATATGTATTGCCGAAAGTCATCACAGTTAAGAAACTTGGAAAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp GTACAAATTAGTGATGTCACTTCACTACATCCACCATGTGGGTCCTaGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAATTTTTG +
Preference number: 1 (lower is better)
Translates to: VQISDVTSLHPPCGS*VTHSNFHAYWQEFL
Trigger: CAAAAATTCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGATGTAGTGAAGTGACATCACTAATTTGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp TTCTTTGACTGTTGTATCAATGTTTTCTACGGTATCTTCTGCACCTaGGATTCTCTCTTCTATCTCTTGTGTTCTGTTGGTGATGCTTGC +
Preference number: 1 (lower is better)
Translates to: FFDCCINVFYGIFCT*DSLFYLLCSVGDAC
Trigger: GCAAGCATCACCAACAGAACACAAGAGATAGAAGAGAGAATCTCAGGTGCAGAAGATACCGTAGAAAACATTGATACAACAGTCAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp CTATCATCATCACAAGAAGTGATTTTAGATCCTAATTTGCTTTTCTaGTGTGATGGTGTATCCAGGACTTGCTATGGTGTGAGAATTGGC +
Preference number: 1 (lower is better)
Translates to: LSSSQEVILDPNLLF*CDGVSRTCYGVRIG
Trigger: GCCAATTCTCACACCATAGCAAGTCCTGGATACACCATCACACCAGAAAAGCAAATTAGGATCTAAAATCACTTCTTGTGATGATGATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp AATTTCCCCACATGTGCACTGATACTTTGTGTATATGGATATGACTaGTGTTCTGTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTG +
Preference number: 1 (lower is better)
Translates to: NFPTCALILCVYGYD*CSVVVRQSSKYKLV
Trigger: CACTAATTTGTACTTTGAACTCTGTCTGACAACCACAGAACATCAGTCATATCCATATACACAAAGTATCAGTGCACATGTGGGGAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 90 bp CAGAATGACATCTGCCCAGGATTTTCTAGCTTTCCTAGTCTCTGGTaGAAAGTCTGCTGTAATTCTGATTCATACTTTATATGTTACTTG +
Preference number: 1 (lower is better)
Translates to: QNDICPGFSSFPSLW*KVCCNSDSYFICYL
Trigger: CAAGTAACATATAAAGTATGAATCAGAATTACAGCAGACTTTTCACCAGAGACTAGGAAAGCTAGAAAATCCTGGGCAGATGTCATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 90 bp TTCCTGTTATTGAAAACCATCCCAAGTCTGACAAGATGGTACAGCTaGAAAAGTCACTTGATATACAAACCAGATGACCTTTATTTGATC +
Preference number: 1 (lower is better)
Translates to: FLLLKTIPSLTRWYS*KSHLIYKPDDLYLI
Trigger: GATCAAATAAAGGTCATCTGGTTTGTATATCAAGTGACTTTTCCAGCTGTACCATCTTGTCAGACTTGGGATGGTTTTCAATAACAGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGGAGGAGGCAGGTGGTaGCAGTGGGTCTCCCAAGGA +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRGGGRW*QWVSQG
Trigger: TCCTTGGGAGACCCACTGTCACCACCTGCCTCCTCC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp GGTGTATCCCGGTGCTTCAGGAACACTCCAAGAACCAGGACAGCCAGACCAGCCGCAGGCAATGGTCTCTaGTGTGGCTCGAGTACTGCT +
Preference number: 2 (lower is better)
Translates to: GVSRCFRNTPRTRTARPAAGNGL*CGSSTA
Trigger: AGCAGTACTCGAGCCACACCAGAGACCATTGCCTGC...GGCTGGTCTGGCTGTCCTGGTTCTTGGAGTGTTCCTGAAGCACCGGGATACACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp TCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAGAACAACCAGGAGACAGCCACTGTaGACACCACAGCAAAGGTGG +
Preference number: 2 (lower is better)
Translates to: SLSGNGGKVANHTPQRTTRRQPL*TPQQRW
Trigger: CCACCTTTGCTGTGGTGTTCACAGTGGCTGTCTCCT...GGTTGTTCTCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCATCATGGCATTGGATaGCAATGTGCTGGGGCTCTG +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRHHGIG*QCAGAL
Trigger: CAGAGCCCCAGCACATTGTCATCCAATGCCATGATG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR GCA 90 bp AGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAGTGTGGCTCGAGTACTaGTCCTTGGGGCACAGAAGA +
Preference number: 2 (lower is better)
Translates to: RAYPCLGMVGRWPTTPHRVWLEY*SLGHRR
Trigger: TCTTCTGTGCCCCAAGGAGCAGTACTCGAGCCACAC...TCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGCAGTTTTCCAGGGATaGGAGCAATGTCCCAAGCTT +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRAVFQG*EQCPKL
Trigger: AAGCTTGGGACATTGCTCCCATCCCTGGAAAACTGC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp AGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAGGGCTCAGGCATATCTaGATCCTGCTTCGTGGTCTG +
Preference number: 2 (lower is better)
Translates to: RAYPCLGMVGRWPTTPHRGLRHI*ILLRGL
Trigger: CAGACCACGAAGCAGGATCCAGATATGCCTGAGCCC...TCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CAA 90 bp AATTACAGGAAGGATGACAATGGGCCTGACTGTCTCCTGGGGAACTaGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGCACTGT +
Preference number: 2 (lower is better)
Translates to: NYRKDDNGPDCLLGN*QVQEQLWPGCSGHC
Trigger: ACAGTGCCCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAGTCAGGCCCATTGTCATCCTTCCTGTAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp TCATGGCATTGGATGACAATGTGCTGGGGCTCTGAGAGCATATCCTaGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAGA +
Preference number: 2 (lower is better)
Translates to: SWHWMTMCWGSESIS*SGNGGKVANHTPQR
Trigger: TCTCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATGGAGGAGGCAGGTGGTaGCAGTGGGTCTCCCAAGGA +
Preference number: 2 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYGGGRW*QWVSQG
Trigger: TCCTTGGGAGACCCACTGTCACCACCTGCCTCCTCC...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCTGGGTATAGTAGCCTaGACAGGCATTTGTGATCTC +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRLGIVA*TGICDL
Trigger: GAGATCACAAATGCCTGTCCAGGCTACTATACCCAG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp CCAGGGCTCAGGCATATCTGGATCCTGCTTCGTGGTCTGGTGACTTaGAATGCCAAGACTACTGTGAGAGTCTTGGCCAGAACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: PGLRHIWILLRGLVT*NAKTTVRVLARTEE
Trigger: CTCCTCTGTTCTGGCCAAGACTCTCACAGTAGTCTTGGCATTCAAAGTCACCAGACCACGAAGCAGGATCCAGATATGCCTGAGCCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCCTGGTGTTCCCCTCTaGTTTCCTGCTGTTGGAGGA +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFPGVPL*FPAVGG
Trigger: TCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCAGAGAAGTGAAAGATaGAGAAGCTACCCCCAACAA +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRQRSER*RSYPQQ
Trigger: TTGTTGGGGGTAGCTTCTCCATCTTTCACTTCTCTG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAATATCAGTTGTGCACATaGTCAGCAAGCCTTGACCAC +
Preference number: 2 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEYQLCT*SASLDH
Trigger: GTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCAATGGTCTCTGGTGTaGCTCGAGTACTGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYQWSLV*LEYCSL
Trigger: CAAGGAGCAGTACTCGAGCCACACCAGAGACCATTG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAACACCACAGCAAAGGTaGTCTGACGGAGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARTPQQR*SDGGGR
Trigger: CCTGCCTCCTCCGTCAGACCACCTTTGCTGTGGTGT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACATCCTTGTCTGGGAATaGTGGGAAGGTGGCCAACCA +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYILVWE*WEGGQP
Trigger: TGGTTGGCCACCTTCCCACCATTCCCAGACAAGGAT...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAGGTATCTTCTGCACCTaGGATTCTCTCTTCTATCTC +
Preference number: 2 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEGIFCT*DSLFYL
Trigger: GAGATAGAAGAGAGAATCTCAGGTGCAGAAGATACC...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGTTTCCAAAATTACTTaGGAACCGGAATGTTTTGCC +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRVSKIT*EPECFA
Trigger: GGCAAAACATTCCGGTTCTCAAGTAATTTTGGAAAC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTAATGTGCTGGGGCTCTaGGAGCATATCCTTGTCTGG +
Preference number: 2 (lower is better)
Translates to: TLPILLYMMALPEPGRSVNVLGL*EHILVW
Trigger: CCAGACAAGGATATGCTCTCAGAGCCCCAGCACATT...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTTGCCTCCTGCCATCTaGTTATCGCTAGTGCTACCT +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYLPPAI*LSLVLP
Trigger: AGGTAGCACTAGCGATAACCAGATGGCAGGAGGCAA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp CAGGACGGTCAAAATGAGGGCTCTGTCTTGGCAATATCCAGGCTCTaGGTCCAGAAAGGTCAGACCCAGAGAGACAGACAAAGAAAGCAA +
Preference number: 2 (lower is better)
Translates to: QDGQNEGSVLAISRL*VQKGQTQRDRQRKQ
Trigger: TTGCTTTCTTTGTCTGTCTCTCTGGGTCTGACCTTTCTGGACCAAGAGCCTGGATATTGCCAAGACAGAGCCCTCATTTTGACCGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp CAGGAAGAAGTGTTCTTCTCAGGTTTCAGTAAGATGATGCAGCACTaGGGAATAAAGATGCCACCCAGAAGTCCAGCGGTAGAGGCCAGG +
Preference number: 2 (lower is better)
Translates to: QEEVFFSGFSKMMQH*GIKMPPRSPAVEAR
Trigger: CCTGGCCTCTACCGCTGGACTTCTGGGTGGCATCTTTATTCCCAAGTGCTGCATCATCTTACTGAAACCTGAGAAGAACACTTCTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGTTGTGTATATGGATATaGCTGATGTTCTGTGGTTGT +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRLCIWI*LMFCGC
Trigger: ACAACCACAGAACATCAGTCATATCCATATACACAA...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCTGTCCTCCTCACTTCTaGTCCTATGATCTTGGGTGT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFCPPHF*SYDLGC
Trigger: ACACCCAAGATCATAGGATCAGAAGTGAGGAGGACA...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCTGATGGCAGTGTTTTaGCAGATGTTGTGTCCTCCT +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYLMAVF*QMLCPP
Trigger: AGGAGGACACAACATCTGTCAAAACACTGCCATCAG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTACAGCAAAGGTGGTCTaGCGGAGGAGGCAGGTGGTG +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCTAKVV*RRRQVV
Trigger: CACCACCTGCCTCCTCCGTCAGACCACCTTTGCTGT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAGAACAACCATGACTGATGTTCTGTaGTTGTCAGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: SLSGNGGKVANHTPQRTTMTDVL*LSDRVQ
Trigger: TTGAACTCTGTCTGACAACCACAGAACATCAGTCAT...GGTTGTTCTCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTTGGGTGTTGTGGGACTaGCTGCAGAGTTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: TLPILLYMMALPEPGRSVWVLWD*LQSFCP
Trigger: TGGACAAAAACTCTGCAGCCAGTCCCACAACACCCA...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAAGAACCCAATGCCACTaGTCAGGCAGGGTTCCTATG +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARRTQCH*SGRVPM
Trigger: CATAGGAACCCTGCCTGACCAGTGGCATTGGGTTCT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAGAACCCAATGCCACTaGTCAGGCAGGGTTCCTATG +
Preference number: 2 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYRTQCH*SGRVPM
Trigger: CATAGGAACCCTGCCTGACCAGTGGCATTGGGTTCT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGTTGAAGATATTTACTaGCCCTTTAAGTTGGGAATC +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRVEDIY*PFKLGI
Trigger: GATTCCCAACTTAAAGGGCCAGTAAATATCTTCAAC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCTGGGTATAGTAGCCTaGACAGGCATTTGTGATCTC +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFLGIVA*TGICDL
Trigger: GAGATCACAAATGCCTGTCCAGGCTACTATACCCAG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGATAAATGTGTTCATGTaGATCTCATCCTTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRINVFM*ISSFLA
Trigger: AGCCAAGAAGGATGAGATCCACATGAACACATTTAT...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGTCCTGGGCAGGCAATaGTCTCTGGTGTGGCTCGAG +
Preference number: 2 (lower is better)
Translates to: SYLATVKITAHHKRGCLDVLGRQ*SLVWLE
Trigger: CTCGAGCCACACCAGAGACCATTGCCTGCCCAGGAC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCGGACTTGCTATGGTGTaGGAATTGGCTTCTGATGAT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFGLAMV*ELASDD
Trigger: ATCATCAGAAGCCAATTCTCACACCATAGCAAGTCC...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTGGGTGTTGTGGGACTaGCTGCAGAGTTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYWVLWD*LQSFCP
Trigger: TGGACAAAAACTCTGCAGCCAGTCCCACAACACCCA...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGATTCCTCTGGGTGTTGTaGGACTGGCTGCAGAGTTTT +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARFLWVL*DWLQSF
Trigger: AAAACTCTGCAGCCAGTCCCACAACACCCAGAGGAA...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAAGAACCCAATGCCACTaGTCAGGCAGGGTTCCTATG +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTRTQCH*SGRVPM
Trigger: CATAGGAACCCTGCCTGACCAGTGGCATTGGGTTCT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCTCCAGCTTGTTTCTTaGGACCATTTGCTTGGGAAA +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYLQLVS*DHLLGK
Trigger: TTTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGTGTGATGTTGCTATTTaGTTTTCTTCTCTCGATTTG +
Preference number: 2 (lower is better)
Translates to: LSPGELASPRAAVARMLRCDVAI*FSSLDL
Trigger: CAAATCGAGAGAAGAAAACCAAATAGCAACATCACA...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCCTGGGCAGGCAATaGTCTCTGGTGTGGCTCGAG +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVVLGRQ*SLVWLE
Trigger: CTCGAGCCACACCAGAGACCATTGCCTGCCCAGGAC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCGGAAGATCTCTGTCCTaGGCAGGCAATGGTCTCTGG +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVGRSLS*AGNGLW
Trigger: CCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCC...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTACACCACAGCAAAGGTaGTCTGACGGAGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCTPQQR*SDGGGR
Trigger: CCTGCCTCCTCCGTCAGACCACCTTTGCTGTGGTGT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCCTTGTCTGGGAATGGTaGGAAGGTGGCCAACCACAC +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVLVWEW*EGGQPH
Trigger: GTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAG...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGATGGATGACAATGTGCTaGGGCTCTGAGAGCATATCC +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARWMTMC*GSESIS
Trigger: GGATATGCTCTCAGAGCCCCAGCACATTGTCATCCA...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCACAGCAAAGGTGGTCTaGCGGAGGAGGCAGGTGGTG +
Preference number: 2 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYITAKVV*RRRQVV
Trigger: CACCACCTGCCTCCTCCGTCAGACCACCTTTGCTGT...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR GCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCTCTTTGTCACTGAGGTaGGTTTTCTGTATGCAGCAA +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFSLSLR*VFCMQQ
Trigger: TTGCTGCATACAGAAAACGCACCTCAGTGACAAAGA...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACAGAACCGGAATGTTTTaGCTAGAATCTGCTGATCCT +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYRTGMF*LESADP
Trigger: AGGATCAGCAGATTCTAGGCAAAACATTCCGGTTCT...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGTGTGGCTCGAGTACTaGTCCTTGGGGCACAGAAGA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLVWLEY*SLGHRR
Trigger: TCTTCTGTGCCCCAAGGAGCAGTACTCGAGCCACAC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR GCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGACATTGGATGACAATGTaGTGGGGCTCTGAGAGCATA +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARHWMTM*WGSESI
Trigger: TATGCTCTCAGAGCCCCAGCACATTGTCATCCAATG...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCTATGGTGTGAGAATTaGCTTCTGATGATGCCAAGT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFLWCEN*LLMMPS
Trigger: ACTTGGCATCATCAGAAGCCAATTCTCACACCATAG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCCTAATTTGCTTTTCTaGTGTGATGGTGTATCCAGG +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFPNLLF*CDGVSR
Trigger: CCTGGATACACCATCACACCAGAAAAGCAAATTAGG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACGTGTCCTGGATGTTTTaGGTTAGGAGCTTTTTACCT +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYVSWMF*VRSFLP
Trigger: AGGTAAAAAGCTCCTAACCCAAAACATCCAGGACAC...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTCAATGGTCTCTGGTGTaGCTCGAGTACTGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVQWSLV*LEYCSL
Trigger: CAAGGAGCAGTACTCGAGCCACACCAGAGACCATTG...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGCAGGCAATGGTCTCTaGTGTGGCTCGAGTACTGCT +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLAGNGL*CGSSTA
Trigger: AGCAGTACTCGAGCCACACCAGAGACCATTGCCTGC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGGGAAGATCTCTGTCCTaGGCAGGCAATGGTCTCTGG +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMGRSLS*AGNGLW
Trigger: CCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCC...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCTTGTCTGGGAATGGTaGGAAGGTGGCCAACCACAC +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMLVWEW*EGGQPH
Trigger: GTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATGGATGACAATGTGCTaGGGCTCTGAGAGCATATCC +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTWMTMC*GSESIS
Trigger: GGATATGCTCTCAGAGCCCCAGCACATTGTCATCCA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACTGATGGCAGTGTTTTaGCAGATGTTGTGTCCTCCT +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTLMAVF*QMLCPP
Trigger: AGGAGGACACAACATCTGTCAAAACACTGCCATCAG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTCTATGTCTTTTTATTaGGGAGCTGAGGCCATTGAT +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYSMSFY*GAEAID
Trigger: ATCAATGGCCTCAGCTCCTCAATAAAAAGACATAGA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCTACGCGTTCCTTGACTaGAAAAGTCTTAGAAGACAT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFYAFLD*KSLRRH
Trigger: ATGTCTTCTAAGACTTTTGCAGTCAAGGAACGCGTA...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAAATTTCCATGCTTACTaGCAAGAATTTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: SSWDHGCVRAPGSGASSENFHAY*QEFLPI
Trigger: AATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATT...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCTTCCTCTGGGTGTTGTaGGACTGGCTGCAGAGTTTT +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVFLWVL*DWLQSF
Trigger: AAAACTCTGCAGCCAGTCCCACAACACCCAGAGGAA...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCTTGCCTCCTGCCATCTaGTTATCGCTAGTGCTACCT +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVLPPAI*LSLVLP
Trigger: AGGTAGCACTAGCGATAACCAGATGGCAGGAGGCAA...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTTTCCCTCCTTGTGTTaGTGTCTTCCATCTATTATC +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYFPSLC*CLPSII
Trigger: GATAATAGATGGAAGACACCAACACAAGGAGGGAAA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCACGGCTATCTTCTTTaGGGTTCACTGAAATATTAC +
Preference number: 2 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYHGYLL*GSLKYY
Trigger: GTAATATTTCAGTGAACCCCAAAGAAGATAGCCGTG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAATGCTCAGCAAGCCTTaGCCACATCATCATTATCAT +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARMLSKP*PHHHYH
Trigger: ATGATAATGATGATGTGGTCAAGGCTTGCTGAGCAT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGTTCAGCTATCTCTGTaGTCCTGTGATTCTAGGATC +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTVQLSL*SCDSRI
Trigger: GATCCTAGAATCACAGGATCACAGAGATAGCTGAAC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCTGTATGCAGCAAAATaGTGGGTCATGTTTACATAT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFLYAAK*WVMFTY
Trigger: ATATGTAAACATGACCCATCATTTTGCTGCATACAG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCTGTTGTGGGACTGGCTaGAGAGTTTTTGTCCAAGGT +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVCCGTG*RVFVQG
Trigger: ACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACA...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCAACCTCCACATATATaGTGTTGTAATTGCATATCC +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFQPPHI*CCNCIS
Trigger: GGATATGCAATTACAACAGCATATATGTGGAGGTTG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTGGGTGTTGTGGGACTaGCTGCAGAGTTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLWVLWD*LQSFCP
Trigger: TGGACAAAAACTCTGCAGCCAGTCCCACAACACCCA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGGAGTCAAGCTGCCTTTaGGACCCTGAGATCTTGATG +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMESSCL*DPEILM
Trigger: CATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTC...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCATAAATGTGTTCATGTaGATCTCATCCTTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFINVFM*ISSFLA
Trigger: AGCCAAGAAGGATGAGATCCACATGAACACATTTAT...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCATATTCCAAATTAGTTaGGGAAATACGCGTTCCTTG +
Preference number: 2 (lower is better)
Translates to: AETTLETLGLQAVGRILFIFQIS*GNTRSL
Trigger: CAAGGAACGCGTATTTCCCCAACTAATTTGGAATAT...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACAGAGAAGTGAAAGATaGAGAAGCTACCCCCAACAA +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTQRSER*RSYPQQ
Trigger: TTGTTGGGGGTAGCTTCTCCATCTTTCACTTCTCTG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACAATATGAATCCCAGTaGTTCCTCAAAGGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTQYESQ*FLKGQE
Trigger: TTCCTGGCCTTTGAGGAACCACTGGGATTCATATTG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCCCCACATGTGCACTaGTACTTTGTGTATATGGAT +
Preference number: 2 (lower is better)
Translates to: PISCAHAQQALTTSSLSSSPHVH*YFVYMD
Trigger: ATCCATATACACAAAGTATCAGTGCACATGTGGGGA...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTGTCCTCCTCACTTCTaGTCCTATGATCTTGGGTGT +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLCPPHF*SYDLGC
Trigger: ACACCCAAGATCATAGGATCAGAAGTGAGGAGGACA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGTCTGTCTTTGTCACTaGGGTGCGTTTTCTGTATGC +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLVCLCH*GAFSVC
Trigger: GCATACAGAAAACGCACCTCAGTGACAAAGACAGAC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTTTCCCAAAAGTCCCTaGTACCCTCCCCACACTGCT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSFPKSP*YPPHTA
Trigger: AGCAGTGTGGGGAGGGTATCAGGGACTTTTGGGAAA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACAAAGAAAGCAAAAATaGAAGCACACAGCCACATGC +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTQRKQK*KHTATC
Trigger: GCATGTGGCTGTGTGCTTTCATTTTTGCTTTCTTTG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGTATTAAGGAAGCAATaGGGACCACTAAGGTTGAAG +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTVLRKQ*GPLRLK
Trigger: CTTCAACCTTAGTGGTCCTCATTGCTTCCTTAATAC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTATCAGTTGTGCACATaGTCAGCAAGCCTTGACCAC +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLYQLCT*SASLDH
Trigger: GTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCATTGGATGACAATGTaGTGGGGCTCTGAGAGCATA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLHWMTM*WGSESI
Trigger: TATGCTCTCAGAGCCCCAGCACATTGTCATCCAATG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTTTCCTCTGGGTGTTGTaGGACTGGCTGCAGAGTTTT +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVFLWVL*DWLQSF
Trigger: AAAACTCTGCAGCCAGTCCCACAACACCCAGAGGAA...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTTCCTCAGAATATTGTaGGACTGGCTGCCGAGTTTG +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLFLRIL*DWLPSL
Trigger: CAAACTCGGCAGCCAGTCCCACAATATTCTGAGGAA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGAGTCAAGCTGCCTTTaGGACCCTGAGATCTTGATG +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVESSCL*DPEILM
Trigger: CATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCTGGGTATAGTAGCCTaGACAGGCATTTGTGATCTC +
Preference number: 2 (lower is better)
Translates to: SYLATVKITAHHKRGCLDLGIVA*TGICDL
Trigger: GAGATCACAAATGCCTGTCCAGGCTACTATACCCAG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAATAAGAGGGGATGTTTaGACCTCCTCACTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTIRGDV*TSSLSF
Trigger: AAAAGAGAGTGAGGAGGTCCAAACATCCCCTCTTAT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATGAGCATATCCTTGTCTaGGAATGGTGGGAAGGTGGC +
Preference number: 2 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYEHILV*EWWEGG
Trigger: GCCACCTTCCCACCATTCCCAGACAAGGATATGCTC...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR TCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAAATGCCCTAATCATTaGGTAAGCCATACCATTCAT +
Preference number: 2 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYKCPNH*VSHTIH
Trigger: ATGAATGGTATGGCTTACTCAATGATTAGGGCATTT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGACTGGTACCAGTTACTaGTGGCAGTGTTTTGACAGA +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMTGTSY*WQCFDR
Trigger: TCTGTCAAAACACTGCCATCAGTAACTGGTACCAGT...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTACTGGTACCAGTTACTaGTGGCAGTGTTTTGACAGA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLTGTSY*WQCFDR
Trigger: TCTGTCAAAACACTGCCATCAGTAACTGGTACCAGT...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGGTTCAGCTATCTCTGTaGTCCTGTGATTCTAGGATC +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMVQLSL*SCDSRI
Trigger: GATCCTAGAATCACAGGATCACAGAGATAGCTGAAC...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTGGACTTGCTATGGTGTaGGAATTGGCTTCTGATGAT +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCGLAMV*ELASDD
Trigger: ATCATCAGAAGCCAATTCTCACACCATAGCAAGTCC...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGGTATCTTCTGCACCTaGGATTCTCTCTTCTATCTC +
Preference number: 2 (lower is better)
Translates to: SYLATVKITAHHKRGCLDGIFCT*DSLFYL
Trigger: GAGATAGAAGAGAGAATCTCAGGTGCAGAAGATACC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATCTATGTCTTTTTATTaGGGAGCTGAGGCCATTGAT +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTSMSFY*GAEAID
Trigger: ATCAATGGCCTCAGCTCCTCAATAAAAAGACATAGA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAATGACTGATGTTCTGTaGTTGTCAGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTMTDVL*LSDRVQ
Trigger: TTGAACTCTGTCTGACAACCACAGAACATCAGTCAT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGGGTGTTGTGGGACTaGCTGCAGAGTTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSWVLWD*LQSFCP
Trigger: TGGACAAAAACTCTGCAGCCAGTCCCACAACACCCA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTTGCCTCCTGCCATCTaGTTATCGCTAGTGCTACCT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSLPPAI*LSLVLP
Trigger: AGGTAGCACTAGCGATAACCAGATGGCAGGAGGCAA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCTCCAGCTTGTTTCTTaGGACCATTTGCTTGGGAAA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLLQLVS*DHLLGK
Trigger: TTTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCCAAGTCTGACAAGATaGTACAGCTGGAAAAGTCAC +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMPSLTR*YSWKSH
Trigger: GTGACTTTTCCAGCTGTACCATCTTGTCAGACTTGG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp TCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAATTTTaGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTTCTTA +
Preference number: 2 (lower is better)
Translates to: SWVTHSNFHAYWQEF*PIVLSSELPFPSFL
Trigger: TAAGAAACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTTCCCCACATGTGCACTaGTACTTTGTGTATATGGAT +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCSPHVH*YFVYMD
Trigger: ATCCATATACACAAAGTATCAGTGCACATGTGGGGA...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAAAATGCCCTAATCATTaGGTAAGCCATACCATTCAT +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTKCPNH*VSHTIH
Trigger: ATGAATGGTATGGCTTACTCAATGATTAGGGCATTT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGTCCTCCTCACTTCTaGTCCTATGATCTTGGGTGT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSCPPHF*SYDLGC
Trigger: ACACCCAAGATCATAGGATCAGAAGTGAGGAGGACA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTTCAGCTATCTCTGTaGTCCTGTGATTCTAGGATC +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVVQLSL*SCDSRI
Trigger: GATCCTAGAATCACAGGATCACAGAGATAGCTGAAC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGGTATCTTCTGCACCTaGGATTCTCTCTTCTATCTC +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVGIFCT*DSLFYL
Trigger: GAGATAGAAGAGAGAATCTCAGGTGCAGAAGATACC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATGCTGTTGGAGGAAATaGACTACAATTATTCTCTTC +
Preference number: 2 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTCCWRK*TTIILF
Trigger: GAAGAGAATAATTGTAGTTCATTTCCTCCAACAGCA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATCATCATGGCATTGGATaGCAATGTGCTGGGGCTCTG +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYHHGIG*QCAGAL
Trigger: CAGAGCCCCAGCACATTGTCATCCAATGCCATGATG...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR GCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGCAATTTCCCCACATGTaGACTGATACTTTGTGTATA +
Preference number: 2 (lower is better)
Translates to: PISCAHAQQALTTSSLSSQFPHM*TDTLCI
Trigger: TATACACAAAGTATCAGTGCACATGTGGGGAAATTG...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCATGTTCTTATATGCTTaGCTCCTGCCATCTGGTTAT +
Preference number: 2 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVMFLYA*LLPSGY
Trigger: ATAACCAGATGGCAGGAGGCAAGCATATAAGAACAT...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTCTTTGTCACTGAGGTaGGTTTTCTGTATGCAGCAA +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLSLSLR*VFCMQQ
Trigger: TTGCTGCATACAGAAAACGCACCTCAGTGACAAAGA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAAATTTCCATGCTTACTaGCAAGAATTTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: STMWVLGNTLKFPCLLARNFHAY*QEFLPI
Trigger: AATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCTATGGTGTGAGAATTaGCTTCTGATGATGCCAAGT +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLLWCEN*LLMMPS
Trigger: ACTTGGCATCATCAGAAGCCAATTCTCACACCATAG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTCTATGGTGTGAGAATTaGCTTCTGATGATGCCAAGT +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCLWCEN*LLMMPS
Trigger: ACTTGGCATCATCAGAAGCCAATTCTCACACCATAG...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCCTAATTTGCTTTTCTaGTGTGATGGTGTATCCAGG +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMPNLLF*CDGVSR
Trigger: CCTGGATACACCATCACACCAGAAAAGCAAATTAGG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGTGTCCTGGATGTTTTaGGTTAGGAGCTTTTTACCT +
Preference number: 2 (lower is better)
Translates to: SYLATVKITAHHKRGCLDVSWMF*VRSFLP
Trigger: AGGTAAAAAGCTCCTAACCCAAAACATCCAGGACAC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTACTGGCCCTTTAAGTTaGGAATCTTCACTCTCTTCT +
Preference number: 2 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLTGPLS*ESSLSS
Trigger: AGAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAGT...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCAATATGAATCCCAGTaGTTCCTCAAAGGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVQYESQ*FLKGQE
Trigger: TTCCTGGCCTTTGAGGAACCACTGGGATTCATATTG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CAA 90 bp CTCATTCCTAGAGTTGAGTGGTCACTAAATCTCAGTCATTCAAAGTaGTATCTCCTTCTCCTGAGATTTCCTAGCTCCTCTTTATCCAAG +
Preference number: 2 (lower is better)
Translates to: LIPRVEWSLNLSHSK*YLLLLRFPSSSLSK
Trigger: CTTGGATAAAGAGGAGCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGACCACTCAACTCTAGGAATGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTATGCTCAGCAAGCCTTaGCCACATCATCATTATCAT +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVMLSKP*PHHHYH
Trigger: ATGATAATGATGATGTGGTCAAGGCTTGCTGAGCAT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCCTGAGATCTTGATGTaGCCAAGCTCCTGGGATCAT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIPEILM*PSSWDH
Trigger: ATGATCCCAGGAGCTTGGTCACATCAAGATCTCAGG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACTTTCCTAGTCTCTGGTaGAAAGTCTGCTGTAATTCT +
Preference number: 2 (lower is better)
Translates to: SYLATVKITAHHKRGCLDFPSLW*KVCCNS
Trigger: AGAATTACAGCAGACTTTTCACCAGAGACTAGGAAA...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGTCTATGTCTTTTTATTaGGGAGCTGAGGCCATTGAT +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMSMSFY*GAEAID
Trigger: ATCAATGGCCTCAGCTCCTCAATAAAAAGACATAGA...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGATGTTCTTATATGCTTaGCTCCTGCCATCTGGTTAT +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMMFLYA*LLPSGY
Trigger: ATAACCAGATGGCAGGAGGCAAGCATATAAGAACAT...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTTCTGTTGGTGATGCTTaGATCTATGACTACTGGTGT +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVSVGDA*IYDYWC
Trigger: ACACCAGTAGTCATAGATGCAAGCATCACCAACAGA...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTATCTTCATCACTTTATaGCAATTTCCCCACATGTGC +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVIFITL*QFPHMC
Trigger: GCACATGTGGGGAAATTGTCATAAAGTGATGAAGAT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCATGCTCAGCAAGCCTTaGCCACATCATCATTATCAT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSMLSKP*PHHHYH
Trigger: ATGATAATGATGATGTGGTCAAGGCTTGCTGAGCAT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCAATTTCCCCACATGTaGACTGATACTTTGTGTATA +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMQFPHM*TDTLCI
Trigger: TATACACAAAGTATCAGTGCACATGTGGGGAAATTG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATTGTTGTGGGACTGGCTaGAGAGTTTTTGTCCAAGGT +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYCCGTG*RVFVQG
Trigger: ACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACA...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTGTTGTGGGACTGGCTaGAGAGTTTTTGTCCAAGGT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNICCGTG*RVFVQG
Trigger: ACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCAGAACCGGAATGTTTTaGCTAGAATCTGCTGATCCT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSRTGMF*LESADP
Trigger: AGGATCAGCAGATTCTAGGCAAAACATTCCGGTTCT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCAACCTCCACATATATaGTGTTGTAATTGCATATCC +
Preference number: 2 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMQPPHI*CCNCIS
Trigger: GGATATGCAATTACAACAGCATATATGTGGAGGTTG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATCCACCATGTGGGTCCTaGGTAACACACTCAAATTTC +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYPPCGS*VTHSNF
Trigger: GAAATTTGAGTGTGTTACCCAGGACCCACATGGTGG...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTATGACTGATGTTCTGTaGTTGTCAGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVMTDVL*LSDRVQ
Trigger: TTGAACTCTGTCTGACAACCACAGAACATCAGTCAT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTTCCTCAGAATATTGTaGGACTGGCTGCCGAGTTTG +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIFLRIL*DWLPSL
Trigger: CAAACTCGGCAGCCAGTCCCACAATATTCTGAGGAA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCACGGCTATCTTCTTTaGGGTTCACTGAAATATTAC +
Preference number: 2 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVHGYLL*GSLKYY
Trigger: GTAATATTTCAGTGAACCCCAAAGAAGATAGCCGTG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCATGTTCTTATATGCTTaGCTCCTGCCATCTGGTTAT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSMFLYA*LLPSGY
Trigger: ATAACCAGATGGCAGGAGGCAAGCATATAAGAACAT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTAATTTCCATGCTTACTaGCAAGAATTTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCNFHAY*QEFLPI
Trigger: AATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTTGTGTATATGGATATaGCTGATGTTCTGTGGTTGT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSLCIWI*LMFCGC
Trigger: ACAACCACAGAACATCAGTCATATCCATATACACAA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATATGCTCAGCAAGCCTTaGCCACATCATCATTATCAT +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYMLSKP*PHHHYH
Trigger: ATGATAATGATGATGTGGTCAAGGCTTGCTGAGCAT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATTCTGTTGGTGATGCTTaGATCTATGACTACTGGTGT +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYSVGDA*IYDYWC
Trigger: ACACCAGTAGTCATAGATGCAAGCATCACCAACAGA...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTTTCTTGGGACCATTTaGTTGGGAAATTGTTTTCCA +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSFLGTI*LGNCFP
Trigger: TGGAAAACAATTTCCCAAGCAAATGGTCCCAAGAAA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGTGTCCTGGATGTTTTaGGTTAGGAGCTTTTTACCT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIVSWMF*VRSFLP
Trigger: AGGTAAAAAGCTCCTAACCCAAAACATCCAGGACAC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATACTGGCCCTTTAAGTTaGGAATCTTCACTCTCTTCT +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYTGPLS*ESSLSS
Trigger: AGAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAGT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCCTTCTTGTAAGTTCATaGGCATCTCTTTCTTTAGGT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSLLVSS*ASLSLG
Trigger: ACCTAAAGAAAGAGATGCCCATGAACTTACAAGAAG...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGTTATTTTTGTTGTTaGAGGTGGGATTCTGTTTGC +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSCYFCC*RWDSVC
Trigger: GCAAACAGAATCCCACCTCCAACAACAAAAATAACA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCATATTCCAAATTAGTTaGGGAAATACGCGTTCCTTG +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSIFQIS*GNTRSL
Trigger: CAAGGAACGCGTATTTCCCCAACTAATTTGGAATAT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTTTCCTAGTCTCTGGTaGAAAGTCTGCTGTAATTCT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIFPSLW*KVCCNS
Trigger: AGAATTACAGCAGACTTTTCACCAGAGACTAGGAAA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTCTATGTCTTTTTATTaGGGAGCTGAGGCCATTGAT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNISMSFY*GAEAID
Trigger: ATCAATGGCCTCAGCTCCTCAATAAAAAGACATAGA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGTTTCCAAAATTACTTaGGAACCGGAATGTTTTGCC +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIVSKIT*EPECFA
Trigger: GGCAAAACATTCCGGTTCTCAAGTAATTTTGGAAAC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCAATTTCCATGCTTACTaGCAAGAATTTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSNFHAY*QEFLPI
Trigger: AATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATATGACTGATGTTCTGTaGTTGTCAGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYMTDVL*LSDRVQ
Trigger: TTGAACTCTGTCTGACAACCACAGAACATCAGTCAT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCGAGAAATTTCTTTTCTaGTCTAGTCTGTTTGGAGTT +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSEKFLF*SSLFGV
Trigger: AACTCCAAACAGACTAGACCAGAAAAGAAATTTCTC...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGTGATGTTGCTATTTaGTTTTCTTCTCTCGATTTG +
Preference number: 2 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSCDVAI*FSSLDL
Trigger: CAAATCGAGAGAAGAAAACCAAATAGCAACATCACA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp GGCATCTCTTTCTTTAGGTTAGAGAAGTTTTCTTCTACAATTTTGTaGAAGATATTTACTGGCCCTTTAAGTTGGGAATCTTCACTCTCT +
Preference number: 2 (lower is better)
Translates to: GISFFRLEKFSSTIL*KIFTGPLSWESSLS
Trigger: AGAGAGTGAAGATTCCCAACTTAAAGGGCCAGTAAATATCTTCAACAAAATTGTAGAAGAAAACTTCTCTAACCTAAAGAAAGAGATGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 90 bp ATGGGCATCTCTTTCTTTAGGTTAGAGAAGTTTTCTTCTACAATTTaGTTGAAGATATTTACTGGCCCTTTAAGTTGGGAATCTTCACTC +
Preference number: 2 (lower is better)
Translates to: MGISFFRLEKFSSTI*LKIFTGPLSWESSL
Trigger: GAGTGAAGATTCCCAACTTAAAGGGCCAGTAAATATCTTCAACAAAATTGTAGAAGAAAACTTCTCTAACCTAAAGAAAGAGATGCCCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTTGTGTATATGGATATaGCTGATGTTCTGTGGTTGT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNILCIWI*LMFCGC
Trigger: ACAACCACAGAACATCAGTCATATCCATATACACAA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR TCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATAAATGCCCTAATCATTaGGTAAGCCATACCATTCAT +
Preference number: 2 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYKCPNH*VSHTIH
Trigger: ATGAATGGTATGGCTTACTCAATGATTAGGGCATTT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR GCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCAATTTCCCCACATGTaGACTGATACTTTGTGTATA +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIQFPHM*TDTLCI
Trigger: TATACACAAAGTATCAGTGCACATGTGGGGAAATTG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCTTCTTGTAAGTTCATaGGCATCTCTTTCTTTAGGT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNILLVSS*ASLSLG
Trigger: ACCTAAAGAAAGAGATGCCCATGAACTTACAAGAAG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGAGAAATTTCTTTTCTaGTCTAGTCTGTTTGGAGTT +
Preference number: 2 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIEKFLF*SSLFGV
Trigger: AACTCCAAACAGACTAGACCAGAAAAGAAATTTCTC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp TCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATaGTCTCTGGTGTGGCTCGAGTACTGCTCCTTGGGG +
Preference number: 3 (lower is better)
Translates to: SKARKISVLGRQ*SLVWLEYCSLG
Trigger: CCCCAAGGAGCAGTACTCGAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 72 bp CTGCTCTCTTACCCACCCACTCCCACTTCTTGGCCCTaGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAA +
Preference number: 3 (lower is better)
Translates to: LLSYPPTPTSWP*CSPLVSCCWRK
Trigger: TTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGAGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp GAGCTCCGGCTCAAACCAGAAAGAACCCAATGCCACTaGTCAGGCAGGGTTCCTATGTTCCTGGATCCCACT +
Preference number: 3 (lower is better)
Translates to: ELRLKPERTQCH*SGRVPMFLDPT
Trigger: AGTGGGATCCAGGAACATAGGAACCCTGCCTGACCAGTGGCATTGGGTTCTTTCTGGTTTGAGCCGGAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp CCTGTGATCCTGAGATCCTGGGTGTGTCAGACTTCCTaGGAGTCAAGCTGCCTTTGGGACCCTGAGATCTTG +
Preference number: 3 (lower is better)
Translates to: PVILRSWVCQTS*ESSCLWDPEIL
Trigger: CAAGATCTCAGGGTCCCAAAGGCAGCTTGACTCTCAGGAAGTCTGACACACCCAGGATCTCAGGATCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp GTTCTGTTGTTGGCCCTAACCACAGGTGTATCCCGGTaGTTCAGGAACACTCCAAGAACCAGGACAGCCAGA +
Preference number: 3 (lower is better)
Translates to: VLLLALTTGVSR*FRNTPRTRTAR
Trigger: TCTGGCTGTCCTGGTTCTTGGAGTGTTCCTGAAGCACCGGGATACACCTGTGGTTAGGGCCAACAACAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 72 bp CCCAATGCCACTGGTCAGGCAGGGTTCCTATGTTCCTaGATCCCACTGGTACCAGTTACTGATGGCAGTGTT +
Preference number: 3 (lower is better)
Translates to: PNATGQAGFLCS*IPLVPVTDGSV
Trigger: AACACTGCCATCAGTAACTGGTACCAGTGGGATCCAGGAACATAGGAACCCTGCCTGACCAGTGGCATTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp ATTACAGGAAGGATGACAATGGGCCTGACTGTCTCCTaGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAG +
Preference number: 3 (lower is better)
Translates to: ITGRMTMGLTVS*GTCKSKSSCGQ
Trigger: CTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAGTCAGGCCCATTGTCATCCTTCCTGTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp GAGTCAAGCTGCCTTTGGGACCCTGAGATCTTGATGTaGCCAAGCTCCTGGGATCATGGGTGTGTTAGAGCA +
Preference number: 3 (lower is better)
Translates to: ESSCLWDPEILM*PSSWDHGCVRA
Trigger: TGCTCTAACACACCCATGATCCCAGGAGCTTGGTCACATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp CCTGAGAGTCAAGCTGCCTTTGGGACCCTGAGATCTTaGTGTGACCAAGCTCCTGGGATCATGGGTGTGTTA +
Preference number: 3 (lower is better)
Translates to: PESQAAFGTLRS*CDQAPGIMGVL
Trigger: TAACACACCCATGATCCCAGGAGCTTGGTCACATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTCTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp TCAGACTTCCTGAGAGTCAAGCTGCCTTTGGGACCCTaGGATCTTGATGTGACCAAGCTCCTGGGATCATGG +
Preference number: 3 (lower is better)
Translates to: SDFLRVKLPLGP*DLDVTKLLGSW
Trigger: CCATGATCCCAGGAGCTTGGTCACATCAAGATCTCAGGGTCCCAAAGGCAGCTTGACTCTCAGGAAGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp TCCAAGAACCAGGACAGCCAGACCAGCCAGCAAGAGTaGTACCAAAGCCAATATGAATCCCAGTGGTTCCTC +
Preference number: 3 (lower is better)
Translates to: SKNQDSQTSQQE*YQSQYESQWFL
Trigger: GAGGAACCACTGGGATTCATATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTGGCTGTCCTGGTTCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGTCTCTCTTCTATCTCTaGTGTTCTGTTGGTGATGCT +
Preference number: 3 (lower is better)
Translates to: LSPGELASPRAAVARMLRSLFYL*CSVGDA
Trigger: AGCATCACCAACAGAACACAAGAGATAGAAGAGAGA...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGTCTGGTTTCCTGCTGTaGGAGGAAATGAACTACAAT +
Preference number: 3 (lower is better)
Translates to: LSPGELASPRAAVARMLRSGFLL*EEMNYN
Trigger: ATTGTAGTTCATTTCCTCCAACAGCAGGAAACCAGA...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTCTCGAGTACTGCTCCTaGGGGCACAGAAGACATCTC +
Preference number: 3 (lower is better)
Translates to: TLPILLYMMALPEPGRSVLEYCS*GHRRHL
Trigger: GAGATGTCTTCTGTGCCCCAAGGAGCAGTACTCGAG...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAGTTTCCTCTGGGTGTaGTGGGACTGGCTGCAGAGT +
Preference number: 3 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYSFLWV*WDWLQS
Trigger: ACTCTGCAGCCAGTCCCACAACACCCAGAGGAAACT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp CCAGACCAGCCAGCAAGAGTGCTACCAAAGCCAATATaGATCCCAGTGGTTCCTCAAAGGCCAGGAAGATCT +
Preference number: 3 (lower is better)
Translates to: PDQPARVLPKPI*IPVVPQRPGRS
Trigger: AGATCTTCCTGGCCTTTGAGGAACCACTGGGATTCATATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR GCA 72 bp GTGGCACCAGAACCATCATGGCATTGGATGACAATGTaGTGGGGCTCTGAGAGCATATCCTTGTCTGGGAAT +
Preference number: 3 (lower is better)
Translates to: VAPEPSWHWMTM*WGSESISLSGN
Trigger: ATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 72 bp GCACCAGAACCATCATGGCATTGGATGACAATGTGCTaGGGCTCTGAGAGCATATCCTTGTCTGGGAATGGT +
Preference number: 3 (lower is better)
Translates to: APEPSWHWMTMC*GSESISLSGNG
Trigger: ACCATTCCCAGACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTCAATCTGCCTATCAGTaGTGCACATGCTCAGCAAGC +
Preference number: 3 (lower is better)
Translates to: TLPILLYMMALPEPGRSVQSAYQ*CTCSAS
Trigger: GCTTGCTGAGCATGTGCACAACTGATAGGCAGATTG...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGTATCTATGTCCACTGTaGTCTCCCTTTGTGATTTTT +
Preference number: 3 (lower is better)
Translates to: LSPGELASPRAAVARMLRYLCPL*SPFVIF
Trigger: AAAAATCACAAAGGGAGACAACAGTGGACATAGATA...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCTTGGGACCATTTGCTaGGGAAATTGTTTTCCAGCC +
Preference number: 3 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYLGTIC*GNCFPA
Trigger: GGCTGGAAAACAATTTCCCAAGCAAATGGTCCCAAG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCACTCCAGCTTGTTTCTaGGGACCATTTGCTTGGGAA +
Preference number: 3 (lower is better)
Translates to: AETTLETLGLQAVGRILFTPACF*GPFAWE
Trigger: TTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGT...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGATCCTAAATGCAGATaGATATCATGTCTTTTCCAC +
Preference number: 3 (lower is better)
Translates to: LSPGELASPRAAVARMLRDPKCR*ISCLFH
Trigger: GTGGAAAAGACATGATATCAATCTGCATTTAGGATC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp AGAAGAAGGTGGCACCAGAACCATCATGGCATTGGATaGCAATGTGCTGGGGCTCTGAGAGCATATCCTTGT +
Preference number: 3 (lower is better)
Translates to: RRRWHQNHHGIG*QCAGALRAYPC
Trigger: ACAAGGATATGCTCTCAGAGCCCCAGCACATTGTCATCCAATGCCATGATGGTTCTGGTGCCACCTTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATCGTGGTCTGGTGACTTaGAATGCCAAGACTACTGTG +
Preference number: 3 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYRGLVT*NAKTTV
Trigger: CACAGTAGTCTTGGCATTCAAAGTCACCAGACCACG...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATCTGGCTGCAGAGTTTTaGTCCAAGGTCTGCCTATTT +
Preference number: 3 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYLAAEF*SKVCLF
Trigger: AAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAG...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTATGTTCTTATATGCTaGCCTCCTGCCATCTGGTTA +
Preference number: 3 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYYVLIC*PPAIWL
Trigger: TAACCAGATGGCAGGAGGCAAGCATATAAGAACATA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCTCTCTCTTCTATCTCTaGTGTTCTGTTGGTGATGCT +
Preference number: 3 (lower is better)
Translates to: AETTLETLGLQAVGRILFSLFYL*CSVGDA
Trigger: AGCATCACCAACAGAACACAAGAGATAGAAGAGAGA...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCGAGGAGCTGAGGCCATaGATGTTAAGAGATATTAAG +
Preference number: 3 (lower is better)
Translates to: AETTLETLGLQAVGRILFEELRP*MLRDIK
Trigger: CTTAATATCTCTTAACATCAATGGCCTCAGCTCCTC...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACGTTTCTTGGGACCATTaGCTTGGGAAATTGTTTTCC +
Preference number: 3 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYVSWDH*LGKLFS
Trigger: GGAAAACAATTTCCCAAGCAAATGGTCCCAAGAAAC...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGACTACTGTGAGAGTCTaGGCCAGAACAGAGGAGACA +
Preference number: 3 (lower is better)
Translates to: PISCAHAQQALTTSSLSSTTVRV*ARTEET
Trigger: TGTCTCCTCTGTTCTGGCCAAGACTCTCACAGTAGT...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCAGGAACTTGGTCTCATaGAAGACATCTGGTAAGTCT +
Preference number: 3 (lower is better)
Translates to: AETTLETLGLQAVGRILFRNLVS*KTSGKS
Trigger: AGACTTACCAGATGTCTTCAATGAGACCAAGTTCCT...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAAAGATGATGCAGCACTaGGGAATAAAGATGCCACCC +
Preference number: 3 (lower is better)
Translates to: STMWVLGNTLKFPCLLARKMMQH*GIKMPP
Trigger: GGGTGGCATCTTTATTCCCAAGTGCTGCATCATCTT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACTGGCTGCAGAGTTTTaGTCCAAGGTCTGCCTATTT +
Preference number: 3 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTLAAEF*SKVCLF
Trigger: AAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCTCGAGTACTGCTCCTaGGGGCACAGAAGACATCTC +
Preference number: 3 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVLEYCS*GHRRHL
Trigger: GAGATGTCTTCTGTGCCCCAAGGAGCAGTACTCGAG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 72 bp AGTTTTGCTGGGTATAGTAGCCTGGACAGGCATTTGTaGTCTCTTAGGGTCAGAATGACATCTGCCCAGGAT +
Preference number: 3 (lower is better)
Translates to: SFAGYSSLDRHL*SLRVRMTSAQD
Trigger: ATCCTGGGCAGATGTCATTCTGACCCTAAGAGATCACAAATGCCTGTCCAGGCTACTATACCCAGCAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp GGGGCAGTGAAATCAGAGGGTGTACCATCAGAGAAGTaGAAGATGGAGAAGCTACCCCCAACAATTACATCT +
Preference number: 3 (lower is better)
Translates to: GAVKSEGVPSEK*KMEKLPPTITS
Trigger: AGATGTAATTGTTGGGGGTAGCTTCTCCATCTTTCACTTCTCTGATGGTACACCCTCTGATTTCACTGCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCAATCTGCCTATCAGTaGTGCACATGCTCAGCAAGC +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLQSAYQ*CTCSAS
Trigger: GCTTGCTGAGCATGTGCACAACTGATAGGCAGATTG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTTTTCTTCTCTCGATTaGCAGCATCTGACAAAGAAA +
Preference number: 3 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYFSSLD*QHLTKK
Trigger: TTTCTTTGTCAGATGCTGCAAATCGAGAGAAGAAAA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCTTTTCTTCTCTCGATTaGCAGCATCTGACAAAGAAA +
Preference number: 3 (lower is better)
Translates to: AETTLETLGLQAVGRILFFSSLD*QHLTKK
Trigger: TTTCTTTGTCAGATGCTGCAAATCGAGAGAAGAAAA...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGTCTCCTGGGGAACTaGCAAGTCCAAGAGCAGCTG +
Preference number: 3 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSCLLGN*QVQEQL
Trigger: CAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCTCAGAGTTCTGTTGTaGGCCCTAACCACAGGTGTA +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLLRVLL*ALTTGV
Trigger: TACACCTGTGGTTAGGGCCAACAACAGAACTCTGAG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTACTACTGTGAGAGTCTaGGCCAGAACAGAGGAGACA +
Preference number: 3 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCTTVRV*ARTEET
Trigger: TGTCTCCTCTGTTCTGGCCAAGACTCTCACAGTAGT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 72 bp AGCAAAGGTACCCTGATGACCCCAATTAAATCCCACTaGATGGAGGGAGTACTCACTTCTACAACTCACTTC +
Preference number: 3 (lower is better)
Translates to: SKGTLMTPIKSH*MEGVLTSTTHF
Trigger: GAAGTGAGTTGTAGAAGTGAGTACTCCCTCCATTCAGTGGGATTTAATTGGGGTCATCAGGGTACCTTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp AGTGATGTCACTTCACTACATCCACCATGTGGGTCCTaGGTAACACACTCAAATTTCCATGCTTACTGGCAA +
Preference number: 3 (lower is better)
Translates to: SDVTSLHPPCGS*VTHSNFHAYWQ
Trigger: TTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGATGTAGTGAAGTGACATCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp GATTTCCTAGCTCCTCTTTATCCAAGGTCACAGCTCTaGGCATCATCTGCCAATTACAGGAAGGATGACAAT +
Preference number: 3 (lower is better)
Translates to: DFLAPLYPRSQL*ASSANYRKDDN
Trigger: ATTGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAAGAGGAGCTAGGAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTACTGGCAAGAATTTTaGCCCATTGTGCTATCTTCT +
Preference number: 3 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYYWQEF*PIVLSS
Trigger: AGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTA...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCAGCTTCCTCAGAATATaGTGGGACTGGCTGCCGAGT +
Preference number: 3 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSSFLRI*WDWLPS
Trigger: ACTCGGCAGCCAGTCCCACAATATTCTGAGGAAGCT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTGGTGTATCCAGGACTaGCTATGGTGTGAGAATTGG +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLWCIQD*LWCENW
Trigger: CCAATTCTCACACCATAGCAAGTCCTGGATACACCA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACTGGTGTATCCAGGACTaGCTATGGTGTGAGAATTGG +
Preference number: 3 (lower is better)
Translates to: SYLATVKITAHHKRGCLDWCIQD*LWCENW
Trigger: CCAATTCTCACACCATAGCAAGTCCTGGATACACCA...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATCTCTCTTCTATCTCTaGTGTTCTGTTGGTGATGCT +
Preference number: 3 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTSLFYL*CSVGDA
Trigger: AGCATCACCAACAGAACACAAGAGATAGAAGAGAGA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGGTTTGGTCTTCTCATaGTGTCCTGGATGTTTTGGG +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLGLVFS*CPGCFG
Trigger: CCCAAAACATCCAGGACACAATGAGAAGACCAAACC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp ACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATaGTTACTGGCAAGAATTTTTGCCCATTGTGCTATC +
Preference number: 3 (lower is better)
Translates to: TMWVLGNTLKFP*LLARIFAHCAI
Trigger: GATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp TCTGTAAAATTGTCCTCTGATTCCCCATGTAAGCCATaGCATGCTCATGCATATGAAAGCACACATGAGTGC +
Preference number: 3 (lower is better)
Translates to: SVKLSSDSPCKP*HAHAYESTHEC
Trigger: GCACTCATGTGTGCTTTCATATGCATGAGCATGGCATGGCTTACATGGGGAATCAGAGGACAATTTTACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp GGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTaGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAG +
Preference number: 3 (lower is better)
Translates to: GSWVTHSNFHAY*QEFLPIVLSSE
Trigger: CTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp GATGCTCAGGGCACTGTTTTAGAGAAAAGCCACAGGTaGATACAAGAAGGAAATATCCCAGTAACAGAAGTG +
Preference number: 3 (lower is better)
Translates to: DAQGTVLEKSHR*IQEGNIPVTEV
Trigger: CACTTCTGTTACTGGGATATTTCCTTCTTGTATCCACCTGTGGCTTTTCTCTAAAACAGTGCCCTGAGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCCAATCTGCCTATCAGTaGTGCACATGCTCAGCAAGC +
Preference number: 3 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSQSAYQ*CTCSAS
Trigger: GCTTGCTGAGCATGTGCACAACTGATAGGCAGATTG...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATAGTTTCCTCTGGGTGTaGTGGGACTGGCTGCAGAGT +
Preference number: 3 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYSFLWV*WDWLQS
Trigger: ACTCTGCAGCCAGTCCCACAACACCCAGAGGAAACT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTACTGGCCCTTTAAGTaGGGAATCTTCACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLYWPFK*GIFTLF
Trigger: GAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAGTA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTTCTGGTCTAGTCTGTTaGGAGTTCTGTAGGCTTCTT +
Preference number: 3 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCSGLVC*EFCRLL
Trigger: AAGAAGCCTACAGAACTCCAAACAGACTAGACCAGA...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACTGTTATTTTTGTTGTaGGAGGTGGGATTCTGTTTG +
Preference number: 3 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTLLFLL*EVGFCL
Trigger: CAAACAGAATCCCACCTCCAACAACAAAAATAACAG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGGTTTCCAAAATTACTaGAGAACCGGAATGTTTTGC +
Preference number: 3 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTGFQNY*RTGMFC
Trigger: GCAAAACATTCCGGTTCTCAAGTAATTTTGGAAACC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp AAGACAGATCAACAATCTGCCTATCAGTTGTGCACATaGTCAGCAAGCCTTGACCACATCATCATTATCATC +
Preference number: 3 (lower is better)
Translates to: KTDQQSAYQLCT*SASLDHIIIII
Trigger: GATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGGCAGATTGTTGATCTGTCTT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp CAATTCATCCATTTACATTATGCAGTTTTCCAGGGATaGGAGCAATGTCCCAAGCTTCTGACCTTTAGGCTA +
Preference number: 3 (lower is better)
Translates to: QFIHLHYAVFQG*EQCPKLLTFRL
Trigger: TAGCCTAAAGGTCAGAAGCTTGGGACATTGCTCCCATCCCTGGAAAACTGCATAATGTAAATGGATGAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACACTGATGTTCTGTGGTaGTCAGACAGAGTTCAAAGT +
Preference number: 3 (lower is better)
Translates to: SYLATVKITAHHKRGCLDTDVLW*SDRVQS
Trigger: ACTTTGAACTCTGTCTGACAACCACAGAACATCAGT...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATAGCTTCCTCAGAATATaGTGGGACTGGCTGCCGAGT +
Preference number: 3 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYSFLRI*WDWLPS
Trigger: ACTCGGCAGCCAGTCCCACAATATTCTGAGGAAGCT...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGTTTCCCTCCTTGTGTaGGTGTCTTCCATCTATTAT +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLVSLLV*VSSIYY
Trigger: ATAATAGATGGAAGACACCAACACAAGGAGGGAAAC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGATCCTAAATGCAGATaGATATCATGTCTTTTCCAC +
Preference number: 3 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTDPKCR*ISCLFH
Trigger: GTGGAAAAGACATGATATCAATCTGCATTTAGGATC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCTGAAGGTGAGGAACTaGGTCTCATTGAAGACATCT +
Preference number: 3 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVLKVRN*VSLKTS
Trigger: AGATGTCTTCAATGAGACCAAGTTCCTCACCTTCAG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR TCA 72 bp TTACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTaGGCTCCCCTTTCCAAGTTTCTTAACTGTGATGAC +
Preference number: 3 (lower is better)
Translates to: LLARIFAHCAIF*APLSKFLNCDD
Trigger: GTCATCACAGTTAAGAAACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp CCCCACATGTGCACTGATACTTTGTGTATATGGATATaGCTGATGTTCTGTGGTTGTCAGACAGAGTTCAAA +
Preference number: 3 (lower is better)
Translates to: PHMCTDTLCIWI*LMFCGCQTEFK
Trigger: TTTGAACTCTGTCTGACAACCACAGAACATCAGTCATATCCATATACACAAAGTATCAGTGCACATGTGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCTGTTATTTTTGTTGTaGGAGGTGGGATTCTGTTTG +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLLLFLL*EVGFCL
Trigger: CAAACAGAATCCCACCTCCAACAACAAAAATAACAG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTTCCTGTTATTTTTGTaGTTGGAGGTGGGATTCTGT +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLFLLFL*LEVGFC
Trigger: ACAGAATCCCACCTCCAACAACAAAAATAACAGGAA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGTTCCTGTTATTTTTGTaGTTGGAGGTGGGATTCTGT +
Preference number: 3 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMFLLFL*LEVGFC
Trigger: ACAGAATCCCACCTCCAACAACAAAAATAACAGGAA...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCGTGGTCTGGTGACTTaGAATGCCAAGACTACTGTG +
Preference number: 3 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIRGLVT*NAKTTV
Trigger: CACAGTAGTCTTGGCATTCAAAGTCACCAGACCACG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR-3UTR CAA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATACTGATGTTCTGTGGTaGTCAGACAGAGTTCAAAGT +
Preference number: 3 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYTDVLW*SDRVQS
Trigger: ACTTTGAACTCTGTCTGACAACCACAGAACATCAGT...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCTGGCTGCAGAGTTTTaGTCCAAGGTCTGCCTATTT +
Preference number: 3 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNILAAEF*SKVCLF
Trigger: AAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTTATCTATGTCCACTGTaGTCTCCCTTTGTGATTTTT +
Preference number: 3 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLYLCPL*SPFVIF
Trigger: AAAAATCACAAAGGGAGACAACAGTGGACATAGATA...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTTTCCTGTTATTTTTGTaGTTGGAGGTGGGATTCTGT +
Preference number: 3 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVFLLFL*LEVGFC
Trigger: ACAGAATCCCACCTCCAACAACAAAAATAACAGGAA...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCAGGAACTTGGTCTCATaGAAGACATCTGGTAAGTCT +
Preference number: 3 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSRNLVS*KTSGKS
Trigger: AGACTTACCAGATGTCTTCAATGAGACCAAGTTCCT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CCA 72 bp TCACAAGAAGTGATTTTAGATCCTAATTTGCTTTTCTaGTGTGATGGTGTATCCAGGACTTGCTATGGTGTG +
Preference number: 3 (lower is better)
Translates to: SQEVILDPNLLF*CDGVSRTCYGV
Trigger: CACACCATAGCAAGTCCTGGATACACCATCACACCAGAAAAGCAAATTAGGATCTAAAATCACTTCTTGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CCA 72 bp TGTTTGATATTAGAATGGCTACTCCAGCTTGTTTCTTaGGACCATTTGCTTGGGAAATTGTTTTCCAGCCTT +
Preference number: 3 (lower is better)
Translates to: CLILEWLLQLVS*DHLLGKLFSSL
Trigger: AAGGCTGGAAAACAATTTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGTAGCCATTCTAATATCAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCTACTGGCAAGAATTTTaGCCCATTGTGCTATCTTCT +
Preference number: 3 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIYWQEF*PIVLSS
Trigger: AGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTA...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATTACTGGCAAGAATTTTaGCCCATTGTGCTATCTTCT +
Preference number: 3 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYYWQEF*PIVLSS
Trigger: AGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTA...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTTACTGGCCCTTTAAGTaGGGAATCTTCACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIYWPFK*GIFTLF
Trigger: GAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAGTA...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCCATTTGCTTGGGAAATaGTTTTCCAGCCTTTTACTC +
Preference number: 3 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSHLLGK*FSSLLL
Trigger: GAGTAAAAGGCTGGAAAACAATTTCCCAAGCAAATG...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR TCA 72 bp ACATGTGCACTGATACTTTGTGTATATGGATATGACTaGTGTTCTGTGGTTGTCAGACAGAGTTCAAAGTAC +
Preference number: 3 (lower is better)
Translates to: TCALILCVYGYD*CSVVVRQSSKY
Trigger: GTACTTTGAACTCTGTCTGACAACCACAGAACATCAGTCATATCCATATACACAAAGTATCAGTGCACATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGTTTCCCTCCTTGTGTaGGTGTCTTCCATCTATTAT +
Preference number: 3 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIVSLLV*VSSIYY
Trigger: ATAATAGATGGAAGACACCAACACAAGGAGGGAAAC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGAGGAGCTGAGGCCATaGATGTTAAGAGATATTAAG +
Preference number: 3 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIEELRP*MLRDIK
Trigger: CTTAATATCTCTTAACATCAATGGCCTCAGCTCCTC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp TCAGGTTTCCAAAATTACTTGAGAACCGGAATGTTTTaGCTAGAATCTGCTGATCCTAAATGCAGATTGATA +
Preference number: 3 (lower is better)
Translates to: SGFQNYLRTGMF*LESADPKCRLI
Trigger: TATCAATCTGCATTTAGGATCAGCAGATTCTAGGCAAAACATTCCGGTTCTCAAGTAATTTTGGAAACCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR GCA 72 bp CTCATGCATATGAAAGCACACATGAGTGCACACAAATaGATACACACACACACATCATATATACACATTACA +
Preference number: 3 (lower is better)
Translates to: LMHMKAHMSAHK*IHTHTSYIHIT
Trigger: TGTAATGTGTATATATGATGTGTGTGTGTGTATGCATTTGTGTGCACTCATGTGTGCTTTCATATGCATGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGCTGGGGTTAGCACCTaGCTGGCCAGAGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRAGVST*LARELA
Trigger: GGCCAGCTCTCTGGCCAGTCAGGTGCTAACCCCAGC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp AGGCAGGTGGTGACAGTGGGTCTCCCAAGGAAGAGCAAGGCACACAGGGCACACGTCTGGGCACTTGGCTaGACCCTGGAAGGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: RQVVTVGLPRKSKAHRAHVWALG*TLEGSF
Trigger: AAAGCTGCCTTCCAGGGTTCAGCCAAGTGCCCAGAC...GTGTGCCCTGTGTGCCTTGCTCTTCCTTGGGAGACCCACTGTCACCACCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR GCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGGAAACGCTTGAAGTCTaGAGCCCAGCTGGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRETLEV*SPAGGA
Trigger: TGCCCCGCCAGCTGGGCTGCAGACTTCAAGCGTTTC...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGGCAGGTGGTGACAGTGGGTCTCCCAAGGAAGAGCAAGGCACACAGGGCACACATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: RQVVTVGLPRKSKAHRAHMRALP*QQPGSC
Trigger: GCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCAT...GTGTGCCCTGTGTGCCTTGCTCTTCCTTGGGAGACCCACTGTCACCACCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CAA 72 bp CCCCACACTGCTCTCTTACCCACCCACTCCCACTTCTaGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: PHTALLPTHSHF*ALVFPSGFLLL
Trigger: CAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGAGAGCAGTGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCGCTGGGGTTAGCACCTaGCTGGCCAGAGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: AETTLETLGLQAVGRILFAGVST*LARELA
Trigger: GGCCAGCTCTCTGGCCAGTCAGGTGCTAACCCCAGC...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GGTGTATCCCGGTGCTTCAGGAACACTCCAAGAACCAGGACAGCCAGACCAGCCCACCCTCTGTCACTGTaGTGTTCTGGTAGGGCCACA +
Preference number: 4 (lower is better)
Translates to: GVSRCFRNTPRTRTARPAHPLSL*CSGRAT
Trigger: TGTGGCCCTACCAGAACATCACAGTGACAGAGGGTG...GGCTGGTCTGGCTGTCCTGGTTCTTGGAGTGTTCCTGAAGCACCGGGATACACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR GCA 90 bp AGGCAGGTGGTGACAGTGGGTCTCCCAAGGAAGAGCAAGGCACACAGGGCACACAGAGAGCTGGCCTGCTaGCCAAAGTCATCATCATGG +
Preference number: 4 (lower is better)
Translates to: RQVVTVGLPRKSKAHRAHRELAC*PKSSSW
Trigger: CCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCT...GTGTGCCCTGTGTGCCTTGCTCTTCCTTGGGAGACCCACTGTCACCACCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR GCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCCTCAGGGCATGGGCTaGAATCAAAACAGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRPQGMG*NQNSSG
Trigger: CCCACTGCTGTTTTGATTGCAGCCCATGCCCTGAGG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTGCTGGGGTTAGCACCTaGCTGGCCAGAGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: TLPILLYMMALPEPGRSVAGVST*LARELA
Trigger: GGCCAGCTCTCTGGCCAGTCAGGTGCTAACCCCAGC...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR TCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAGTCTGGGCACTTGGCTaGACCCTGGAAGGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEVWALG*TLEGSF
Trigger: AAAGCTGCCTTCCAGGGTTCAGCCAAGTGCCCAGAC...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATGGTCTCTGGTGTGGCTCAGTCTGCAGCCCAGCTaGCGGGGCAGTGAAATTAGA +
Preference number: 4 (lower is better)
Translates to: SKARKISVLGRQWSLVWLSLQPS*RGSEIR
Trigger: TCTAATTTCACTGCCCCGCCAGCTGGGCTGCAGACT...GAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR TCA 90 bp TCAAAGGCCAGGAAGATCTCTGTCCTGGGCAGGCAATGGTCTCTGGTGTGGCTCGCTCCTCCTGCCCTGTaGGAAAGCCCATTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: SKARKISVLGRQWSLVWLAPPAL*ESPLFH
Trigger: ATGAAACAATGGGCTTTCTCACAGGGCAGGAGGAGC...GAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
3UTR CAA 72 bp AAGGATGACAATGGGCCTGACTGTCTCCTGGGGAACTaGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCA +
Preference number: 4 (lower is better)
Translates to: KDDNGPDCLLGN*QVQEQLWPGCS
Trigger: TGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAGTCAGGCCCATTGTCATCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GCTCAGAGTTCTGTTGTTGGCCCTAACCACAGGTGTATCCCGGTGCTTCAGGAAGCAGAGTGTCTTTGCTaGCCCACACCTGTCCTGAGA +
Preference number: 4 (lower is better)
Translates to: AQSSVVGPNHRCIPVLQEAECLC*PTPVLR
Trigger: TCTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGC...TTCCTGAAGCACCGGGATACACCTGTGGTTAGGGCCAACAACAGAACTCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR TCA 90 bp AGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGACCAACACAGACCAAGTaGAATACACCATCGGGGGTC +
Preference number: 4 (lower is better)
Translates to: RAYPCLGMVGRWPTTPHRPTQTK*NTPSGV
Trigger: GACCCCCGATGGTGTATTTCACTTGGTCTGTGTTGG...TCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR GCA 90 bp AGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGAAGAGAGCTGGCCTGCTaGCCAAAGTCATCATCATGG +
Preference number: 4 (lower is better)
Translates to: RAYPCLGMVGRWPTTPHRRELAC*PKSSSW
Trigger: CCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCT...TCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYMRALP*QQPGSC
Trigger: GCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCAT...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: AETTLETLGLQAVGRILFMRALP*QQPGSC
Trigger: GCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCAT...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp GGGCCTGAGGCTGAGACCACACTGGAAACTCTAGGCTaGCAGGCCGTAGGGAGAATATTGTTCACTCATTCC +
Preference number: 4 (lower is better)
Translates to: GPEAETTLETLG*QAVGRILFTHS
Trigger: GGAATGAGTGAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGCCTCAGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GGTGTATCCCGGTGCTTCAGGAACACTCCAAGAACCAGGACAGCCAGACCAGCCAGAGGTAGAATTCAATaGAAACCCCAGCTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: GVSRCFRNTPRTRTARPARGRIQ*KPQLGL
Trigger: TAACCCCAGCTGGGGTTTGCATTGAATTCTACCTCT...GGCTGGTCTGGCTGTCCTGGTTCTTGGAGTGTTCCTGAAGCACCGGGATACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR GCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCCTCAGGGCATGGGCTaGAATCAAAACAGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: AETTLETLGLQAVGRILFPQGMG*NQNSSG
Trigger: CCCACTGCTGTTTTGATTGCAGCCCATGCCCTGAGG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGATGAAGGATGGAAACTaGATCTTGTCACTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRMKDGN*ILSLRL
Trigger: CAGCCTGAGTGACAAGATCCAGTTTCCATCCTTCAT...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAAGCTGGGTAACTGCATaGGAGGATGTGAGGTCACTA +
Preference number: 4 (lower is better)
Translates to: SSWDHGCVRAPGSGASSESWVTA*EDVRSL
Trigger: TAGTGACCTCACATCCTCCCATGCAGTTACCCAGCT...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GCTCAGAGTTCTGTTGTTGGCCCTAACCACAGGTGTATCCCGGTGCTTCAGGAATTCCCTGTGCAGAACTaGACACCCTCTGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: AQSSVVGPNHRCIPVLQEFPVQN*TPSVTV
Trigger: CACAGTGACAGAGGGTGTCCAGTTCTGCACAGGGAA...TTCCTGAAGCACCGGGATACACCTGTGGTTAGGGCCAACAACAGAACTCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCTCTTCATGTCTCTTTaGTCTGCAAACTGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRLFMSL*SANCPS
Trigger: TGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CTGTCTCCTGGGGAACTTGCAAGTCCAAGAGCAGCTGTGGCCAGGATGCTCAGGCAATATGAATCCCAGTaGTTCCTCAAAGGCCAGGAA +
Preference number: 4 (lower is better)
Translates to: LSPGELASPRAAVARMLRQYESQ*FLKGQE
Trigger: TTCCTGGCCTTTGAGGAACCACTGGGATTCATATTG...CCTGAGCATCCTGGCCACAGCTGCTCTTGGACTTGCAAGTTCCCCAGGAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACGGGCTCAGGCATATCTaGATCCTGCTTCGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYGLRHI*ILLRGL
Trigger: CAGACCACGAAGCAGGATCCAGATATGCCTGAGCCC...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAGGAGACAGACAGGGATaGCCGTGTGTCCCCAACCAA +
Preference number: 4 (lower is better)
Translates to: STMWVLGNTLKFPCLLARGDRQG*PCVPNQ
Trigger: TTGGTTGGGGACACACGGTCATCCCTGTCTGTCTCC...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCCATCATGGGCAAGAATaGTCACCCAGGACCACTGGA +
Preference number: 4 (lower is better)
Translates to: AETTLETLGLQAVGRILFHHGQE*SPRTTG
Trigger: TCCAGTGGTCCTGGGTGATCATTCTTGCCCATGATG...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGCTGGGGTTAGCACCTaGCTGGCCAGAGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDAGVST*LARELA
Trigger: GGCCAGCTCTCTGGCCAGTCAGGTGCTAACCCCAGC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATCCACATGGAAACGCTTaGAGTCTGCAGCCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYPHGNA*SLQPSW
Trigger: CCAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGG...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAATATGGTCAGGGCAAGTaGCATGTGCAGAGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEYGQGK*HVQSVF
Trigger: AAAGACACTCTGCACATGGCACTTGCCCTGACCATA...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGAAACGCTTGAAGTCTaGAGCCCAGCTGGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTETLEV*SPAGGA
Trigger: TGCCCCGCCAGCTGGGCTGCAGACTTCAAGCGTTTC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACGAGCATATCCTTGTCTaGGAATGGTGGGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYEHILV*EWWEGG
Trigger: GCCACCTTCCCACCATTCCCAGACAAGGATATGCTC...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACCAACCAAAGCAGCCTaGGGAGAGCCATGCTGGCAT +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTPTKAA*GEPCWH
Trigger: ATGCCAGCATGGCTCTCCTCAGGCTGCTTTGGTTGG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGGAGACAGACAGGGATaGCCGTGTGTCCCCAACCAA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTGDRQG*PCVPNQ
Trigger: TTGGTTGGGGACACACGGTCATCCCTGTCTGTCTCC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGGGATGGGCTCCTCCTaGCCTGTGAGAAAGCCCATT +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTGMGSS*PVRKPI
Trigger: AATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGAAGTCTGCAGCCCAGCTaGCGGGGCAGTGAAATTAGA +
Preference number: 4 (lower is better)
Translates to: STMWVLGNTLKFPCLLARSLQPS*RGSEIR
Trigger: TCTAATTTCACTGCCCCGCCAGCTGGGCTGCAGACT...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACACCCTCTGTCACTGTaGTGTTCTGGTAGGGCCACA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTHPLSL*CSGRAT
Trigger: TGTGGCCCTACCAGAACATCACAGTGACAGAGGGTG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACCTCAGGGCATGGGCTaGAATCAAAACAGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTPQGMG*NQNSSG
Trigger: CCCACTGCTGTTTTGATTGCAGCCCATGCCCTGAGG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGAAACGCTTGAAGTCTaGAGCCCAGCTGGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLETLEV*SPAGGA
Trigger: TGCCCCGCCAGCTGGGCTGCAGACTTCAAGCGTTTC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGAAGGCAGCTTTCACTaGAGACAGAGGTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTEGSFH*RQRWAL
Trigger: CAGTGCCCACCTCTGTCTGCAGTGAAAGCTGCCTTC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTAGCTGGGTAACTGCATaGGAGGATGTGAGGTCACTA +
Preference number: 4 (lower is better)
Translates to: TLPILLYMMALPEPGRSVSWVTA*EDVRSL
Trigger: TAGTGACCTCACATCCTCCCATGCAGTTACCCAGCT...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTCAATCAAAACAGCAGTaGGGGGCTCCCAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVQSKQQ*GAPSLG
Trigger: GCCCAGACTGGGAGCCCCCCACTGCTGTTTTGATTG...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAAGTCTGCAGCCCAGCTaGCGGGGCAGTGAAATTAGA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTSLQPS*RGSEIR
Trigger: TCTAATTTCACTGCCCCGCCAGCTGGGCTGCAGACT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGCTCCTCCTGCCCTGTaGGAAAGCCCATTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTAPPAL*ESPLFH
Trigger: ATGAAACAATGGGCTTTCTCACAGGGCAGGAGGAGC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCGCAGAGTGTCTTTGCTaGCCCACACCTGTCCTGAGA +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVAECLC*PTPVLR
Trigger: TCTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGC...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACCAACACAGACCAAGTaGAATACACCATCGGGGGTC +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTPTQTK*NTPSGV
Trigger: GACCCCCGATGGTGTATTTCACTTGGTCTGTGTTGG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCCACATGGAAACGCTTaGAGTCTGCAGCCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLPHGNA*SLQPSW
Trigger: CCAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAAGAGAGCTGGCCTGCTaGCCAAAGTCATCATCATGG +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTRELAC*PKSSSW
Trigger: CCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACAGAGGTAGAATTCAATaGAAACCCCAGCTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYRGRIQ*KPQLGL
Trigger: TAACCCCAGCTGGGGTTTGCATTGAATTCTACCTCT...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATCATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYHVSLV*KLSLRA
Trigger: TGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATG...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TCCACCATGTGGGTCCTGGGTAACACACTCAAATTTCCATGCTTACTGGCAAGACATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: STMWVLGNTLKFPCLLARHVSLV*KLSLRA
Trigger: TGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATG...TCTTGCCAGTAAGCATGGAAATTTGAGTGTGTTACCCAGGACCCACATGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCAACAGCCAGGCTCTTaGTCCAGAAAGGGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDQQPGS*SRKGRA
Trigger: GGCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTGAAGGCAGCTTTCACTaGAGACAGAGGTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVEGSFH*RQRWAL
Trigger: CAGTGCCCACCTCTGTCTGCAGTGAAAGCTGCCTTC...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAAAACCAGAACAACTCTaGCTGTACATTTCTGCATCT +
Preference number: 4 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEKPEQL*LYISAS
Trigger: AGATGCAGAAATGTACAGCCAGAGTTGTTCTGGTTT...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATTCCCTGTGCAGAACTaGACACCCTCTGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTFPVQN*TPSVTV
Trigger: CACAGTGACAGAGGGTGTCCAGTTCTGCACAGGGAA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCAATCAAAACAGCAGTaGGGGGCTCCCAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLQSKQQ*GAPSLG
Trigger: GCCCAGACTGGGAGCCCCCCACTGCTGTTTTGATTG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCAATCAAAACAGCAGTaGGGGGCTCCCAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMQSKQQ*GAPSLG
Trigger: GCCCAGACTGGGAGCCCCCCACTGCTGTTTTGATTG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGCTGTCCCTCAGGGCATaGGCTGCAATCAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: PISCAHAQQALTTSSLSSLSLRA*AAIKTA
Trigger: TGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACAG...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACACACCACAGCAAAGGTaGTCTGACGGAGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDTPQQR*SDGGGR
Trigger: CCTGCCTCCTCCGTCAGACCACCTTTGCTGTGGTGT...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCGGGCTCAGGCATATCTaGATCCTGCTTCGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVGLRHI*ILLRGL
Trigger: CAGACCACGAAGCAGGATCCAGATATGCCTGAGCCC...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGGAGCATATCCTTGTCTaGGAATGGTGGGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: PISCAHAQQALTTSSLSSEHILV*EWWEGG
Trigger: GCCACCTTCCCACCATTCCCAGACAAGGATATGCTC...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMMRALP*QQPGSC
Trigger: GCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCAT...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGGAGACAGACAGGGATaGCCGTGTGTCCCCAACCAA +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVGDRQG*PCVPNQ
Trigger: TTGGTTGGGGACACACGGTCATCCCTGTCTGTCTCC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCACCCTCTGTCACTGTaGTGTTCTGGTAGGGCCACA +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDHPLSL*CSGRAT
Trigger: TGTGGCCCTACCAGAACATCACAGTGACAGAGGGTG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCACCCTCTGTCACTGTaGTGTTCTGGTAGGGCCACA +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMHPLSL*CSGRAT
Trigger: TGTGGCCCTACCAGAACATCACAGTGACAGAGGGTG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCAGGGCAAGTGCCATGTaGAGAGTGTCTTTGCTGACC +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVRASAM*RVSLLT
Trigger: GGTCAGCAAAGACACTCTGCACATGGCACTTGCCCT...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCGACTCTCATTCCCTGTaGAGAACTGGACACCCTCTG +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVDSHSL*RTGHPL
Trigger: CAGAGGGTGTCCAGTTCTGCACAGGGAATGAGAGTC...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCCTCAGGGCATGGGCTaGAATCAAAACAGCAGTGGG +
Preference number: 4 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLPQGMG*NQNSSG
Trigger: CCCACTGCTGTTTTGATTGCAGCCCATGCCCTGAGG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACACATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTHVSLV*KLSLRA
Trigger: TGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATG...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATCATTGGATGACAATGTaGTGGGGCTCTGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYHWMTM*WGSESI
Trigger: TATGCTCTCAGAGCCCCAGCACATTGTCATCCAATG...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCAACAGCCAGGCTCTTaGTCCAGAAAGGGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVQQPGS*SRKGRA
Trigger: GGCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTATGAAGGATGGAAACTaGATCTTGTCACTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: TLPILLYMMALPEPGRSVMKDGN*ILSLRL
Trigger: CAGCCTGAGTGACAAGATCCAGTTTCCATCCTTCAT...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCCACTTGGCTGAACCCTaGAAGGCAGCTTTCACTGCA +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVHLAEP*KAAFTA
Trigger: TGCAGTGAAAGCTGCCTTCCAGGGTTCAGCCAAGTG...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCCTGTCCCTCAGGGCATaGGCTGCAATCAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVLSLRA*AAIKTA
Trigger: TGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACAG...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCTTGTCTGGGAATGGTaGGAAGGTGGCCAACCACAC +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDLVWEW*EGGQPH
Trigger: GTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCATCCTTGTCTGGGAATaGTGGGAAGGTGGCCAACCA +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVILVWE*WEGGQP
Trigger: TGGTTGGCCACCTTCCCACCATTCCCAGACAAGGAT...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGGCTCCTCCTGCCCTGTaGGAAAGCCCATTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMAPPAL*ESPLFH
Trigger: ATGAAACAATGGGCTTTCTCACAGGGCAGGAGGAGC...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGCATCATGGGCAAGAATaGTCACCCAGGACCACTGGA +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMHHGQE*SPRTTG
Trigger: TCCAGTGGTCCTGGGTGATCATTCTTGCCCATGATG...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTCATCATGGGCAAGAATaGTCACCCAGGACCACTGGA +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCHHGQE*SPRTTG
Trigger: TCCAGTGGTCCTGGGTGATCATTCTTGCCCATGATG...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACGCAAGCCATACAAGATaGGCTGGAAATTATAATTGC +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYASHTR*AGNYNC
Trigger: GCAATTATAATTTCCAGCTCATCTTGTATGGCTTGC...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATGTCTGGGCACTTGGCTaGACCCTGGAAGGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYVWALG*TLEGSF
Trigger: AAAGCTGCCTTCCAGGGTTCAGCCAAGTGCCCAGAC...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATCCACATGGAAACGCTTaGAGTCTGCAGCCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYPHGNA*SLQPSW
Trigger: CCAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGG...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATGGGATGGGCTCCTCCTaGCCTGTGAGAAAGCCCATT +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYGMGSS*PVRKPI
Trigger: AATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCC...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCGGGATGGGCTCCTCCTaGCCTGTGAGAAAGCCCATT +
Preference number: 4 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIGMGSS*PVRKPI
Trigger: AATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCC...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTAGAGAGCTGGCCTGCTaGCCAAAGTCATCATCATGG +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCRELAC*PKSSSW
Trigger: CCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAGAGGTAGAATTCAATaGAAACCCCAGCTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYRGRIQ*KPQLGL
Trigger: TAACCCCAGCTGGGGTTTGCATTGAATTCTACCTCT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTATGGTCAGGGCAAGTaGCATGTGCAGAGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: PISCAHAQQALTTSSLSSYGQGK*HVQSVF
Trigger: AAAGACACTCTGCACATGGCACTTGCCCTGACCATA...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGACTCTCATTCCCTGTaGAGAACTGGACACCCTCTG +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDDSHSL*RTGHPL
Trigger: CAGAGGGTGTCCAGTTCTGCACAGGGAATGAGAGTC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCCAGAAGTCTGGCCATaGAGACAGACAGGGATGACC +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVPEVWP*RQTGMT
Trigger: GGTCATCCCTGTCTGTCTCCATGGCCAGACTTCTGG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCACTTGGCTGAACCCTaGAAGGCAGCTTTCACTGCA +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDHLAEP*KAAFTA
Trigger: TGCAGTGAAAGCTGCCTTCCAGGGTTCAGCCAAGTG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTCTGTCCCTCAGGGCATaGGCTGCAATCAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCLSLRA*AAIKTA
Trigger: TGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACAG...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCTGGATGACAATGTGCTaGGGCTCTGAGAGCATATCC +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVWMTMC*GSESIS
Trigger: GGATATGCTCTCAGAGCCCCAGCACATTGTCATCCA...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTGAACCATCATGGCATTaGATGACAATGTGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVEPSWH*MTMCWG
Trigger: GCCCCAGCACATTGTCATCCAATGCCATGATGGTTC...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
3UTR CAA 72 bp TGGATCCCACTGGTACCAGTTACTGATGGCAGTGTTTaGACAGATGTTGTGTCCTCCTCACTTCTGATCCTA +
Preference number: 4 (lower is better)
Translates to: WIPLVPVTDGSV*TDVVSSSLLIL
Trigger: TAGGATCAGAAGTGAGGAGGACACAACATCTGTCAAAACACTGCCATCAGTAACTGGTACCAGTGGGATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTaGGAGGAAATGAACTACAATTATTCTCTTCAGCAC +
Preference number: 4 (lower is better)
Translates to: FLALVFPSGFLL*EEMNYNYSLQH
Trigger: GTGCTGAAGAGAATAATTGTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp GTGTTCTTCTCAGGTTTCAGTAAGATGATGCAGCACTaGGGAATAAAGATGCCACCCAGAAGTCCAGCGGTA +
Preference number: 4 (lower is better)
Translates to: VFFSGFSKMMQH*GIKMPPRSPAV
Trigger: TACCGCTGGACTTCTGGGTGGCATCTTTATTCCCAAGTGCTGCATCATCTTACTGAAACCTGAGAAGAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR TCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGCTCCTCCTGCCCTGTaGGAAAGCCCATTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVAPPAL*ESPLFH
Trigger: ATGAAACAATGGGCTTTCTCACAGGGCAGGAGGAGC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp ACTCTGCCTATCCTGCTATACATGATGGCCTTGCCTGAGCCAGGAAGAAGTGTTGCAAGCCATACAAGATaGGCTGGAAATTATAATTGC +
Preference number: 4 (lower is better)
Translates to: TLPILLYMMALPEPGRSVASHTR*AGNYNC
Trigger: GCAATTATAATTTCCAGCTCATCTTGTATGGCTTGC...AACACTTCTTCCTGGCTCAGGCAAGGCCATCATGTATAGCAGGATAGGCAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR TCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCGCAGAGTGTCTTTGCTaGCCCACACCTGTCCTGAGA +
Preference number: 4 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIAECLC*PTPVLR
Trigger: TCTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGC...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATGCAGAGTGTCTTTGCTaGCCCACACCTGTCCTGAGA +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYAECLC*PTPVLR
Trigger: TCTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGC...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTTTCCCTGAAGAGGCTTaGGGGTCTATCAAGCCAACA +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCFPEEA*GSIKPT
Trigger: TGTTGGCTTGATAGACCCTCAAGCCTCTTCAGGGAA...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACTTCCCTGAAGAGGCTTaGGGGTCTATCAAGCCAACA +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDFPEEA*GSIKPT
Trigger: TGTTGGCTTGATAGACCCTCAAGCCTCTTCAGGGAA...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAACCTTTCTGAGGACATaGAGCAGTTCTGGAAATGGA +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTTFLRT*SSSGNG
Trigger: TCCATTTCCAGAACTGCTTCATGTCCTCAGAAAGGT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACTATCAGCTGGGTAACTaGATGGGAGGATGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDYQLGN*MGGCEV
Trigger: GACCTCACATCCTCCCATGCAGTTACCCAGCTGATA...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTAGGGCAAGTGCCATGTaGAGAGTGTCTTTGCTGACC +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVRASAM*RVSLLT
Trigger: GGTCAGCAAAGACACTCTGCACATGGCACTTGCCCT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGAAACGCTTGAAGTCTaGAGCCCAGCTGGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIETLEV*SPAGGA
Trigger: TGCCCCGCCAGCTGGGCTGCAGACTTCAAGCGTTTC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACATCTTGTCACTCAGGCTaGGTAGTGAAGATGAGTAAC +
Preference number: 4 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTSCHSG*VVKMSN
Trigger: GTTACTCATCTTCACTACCCAGCCTGAGTGACAAGA...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCTTGTCACTCAGGCTaGGTAGTGAAGATGAGTAAC +
Preference number: 4 (lower is better)
Translates to: PISCAHAQQALTTSSLSSSCHSG*VVKMSN
Trigger: GTTACTCATCTTCACTACCCAGCCTGAGTGACAAGA...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTATCCTTGTCTGGGAATaGTGGGAAGGTGGCCAACCA +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVILVWE*WEGGQP
Trigger: TGGTTGGCCACCTTCCCACCATTCCCAGACAAGGAT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTGAACCATCATGGCATTaGATGACAATGTGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCEPSWH*MTMCWG
Trigger: GCCCCAGCACATTGTCATCCAATGCCATGATGGTTC...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGCACACAGAAGAAGGTaGCACCAGAACCATCATGGC +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVAHRRR*HQNHHG
Trigger: GCCATGATGGTTCTGGTGCCACCTTCTTCTGTGTGC...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATAGTCTGCAGCCCAGCTaGCGGGGCAGTGAAATTAGA +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYSLQPS*RGSEIR
Trigger: TCTAATTTCACTGCCCCGCCAGCTGGGCTGCAGACT...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATCATCATGGGCAAGAATaGTCACCCAGGACCACTGGA +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYHHGQE*SPRTTG
Trigger: TCCAGTGGTCCTGGGTGATCATTCTTGCCCATGATG...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGTCTGGGCACTTGGCTaGACCCTGGAAGGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIVWALG*TLEGSF
Trigger: AAAGCTGCCTTCCAGGGTTCAGCCAAGTGCCCAGAC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCCACATGGAAACGCTTaGAGTCTGCAGCCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIPHGNA*SLQPSW
Trigger: CCAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATGGGATGGGCTCCTCCTaGCCTGTGAGAAAGCCCATT +
Preference number: 4 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYGMGSS*PVRKPI
Trigger: AATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCC...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGTATGGTCAGGGCAAGTaGCATGTGCAGAGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMYGQGK*HVQSVF
Trigger: AAAGACACTCTGCACATGGCACTTGCCCTGACCATA...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTTATGGTCAGGGCAAGTaGCATGTGCAGAGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCYGQGK*HVQSVF
Trigger: AAAGACACTCTGCACATGGCACTTGCCCTGACCATA...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCGACTCTCATTCCCTGTaGAGAACTGGACACCCTCTG +
Preference number: 4 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIDSHSL*RTGHPL
Trigger: CAGAGGGTGTCCAGTTCTGCACAGGGAATGAGAGTC...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATCAACAGCCAGGCTCTTaGTCCAGAAAGGGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYQQPGS*SRKGRA
Trigger: GGCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTG...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTAGCTGGGTAACTGCATaGGAGGATGTGAGGTCACTA +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVSWVTA*EDVRSL
Trigger: TAGTGACCTCACATCCTCCCATGCAGTTACCCAGCT...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAAACCAGAACAACTCTaGCTGTACATTTCTGCATCT +
Preference number: 4 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYKPEQL*LYISAS
Trigger: AGATGCAGAAATGTACAGCCAGAGTTGTTCTGGTTT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATTTCCCTGTGCAGAACTaGACACCCTCTGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYFPVQN*TPSVTV
Trigger: CACAGTGACAGAGGGTGTCCAGTTCTGCACAGGGAA...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATCTGTCCCTCAGGGCATaGGCTGCAATCAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYLSLRA*AAIKTA
Trigger: TGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACAG...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTACACCACAGCAAAGGTaGTCTGACGGAGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNITPQQR*SDGGGR
Trigger: CCTGCCTCCTCCGTCAGACCACCTTTGCTGTGGTGT...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGCACCAGAACCATCATaGCATTGGATGACAATGTGC +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDAPEPS*HWMTMC
Trigger: GCACATTGTCATCCAATGCCATGATGGTTCTGGTGC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCTTCCCTGAAGAGGCTTaGGGGTCTATCAAGCCAACA +
Preference number: 4 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIFPEEA*GSIKPT
Trigger: TGTTGGCTTGATAGACCCTCAAGCCTCTTCAGGGAA...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATCCAGAAGTCTGGCCATaGAGACAGACAGGGATGACC +
Preference number: 4 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYPEVWP*RQTGMT
Trigger: GGTCATCCCTGTCTGTCTCCATGGCCAGACTTCTGG...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCCAGAAGTCTGGCCATaGAGACAGACAGGGATGACC +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIPEVWP*RQTGMT
Trigger: GGTCATCCCTGTCTGTCTCCATGGCCAGACTTCTGG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATAGCTGGGTAACTGCATaGGAGGATGTGAGGTCACTA +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYSWVTA*EDVRSL
Trigger: TAGTGACCTCACATCCTCCCATGCAGTTACCCAGCT...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCTTGTCTGGGAATGGTaGGAAGGTGGCCAACCACAC +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNILVWEW*EGGQPH
Trigger: GTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCTGGATGACAATGTGCTaGGGCTCTGAGAGCATATCC +
Preference number: 4 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSWMTMC*GSESIS
Trigger: GGATATGCTCTCAGAGCCCCAGCACATTGTCATCCA...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
3UTR CAA 72 bp ACACACTCAAATTTCCATGCTTACTGGCAAGAATTTTaGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: THSNFHAYWQEF*PIVLSSELPFP
Trigger: TGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATTTGAGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp CAGACAGCCAATGACAGGATAGACTTATATGGGGCATaGGCTAGCATCAAAGGCTTTTATCTCAGAGATTAC +
Preference number: 4 (lower is better)
Translates to: QTANDRIDLYGA*ASIKGFYLRDY
Trigger: GTAATCTCTGAGATAAAAGCCTTTGATGCTAGCCAATGCCCCATATAAGTCTATCCTGTCATTGGCTGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCCAACACAGACCAAGTaGAATACACCATCGGGGGTC +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIPTQTK*NTPSGV
Trigger: GACCCCCGATGGTGTATTTCACTTGGTCTGTGTTGG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGACTCTCATTCCCTGTaGAGAACTGGACACCCTCTG +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIDSHSL*RTGHPL
Trigger: CAGAGGGTGTCCAGTTCTGCACAGGGAATGAGAGTC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCCATTGGATGACAATGTaGTGGGGCTCTGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIHWMTM*WGSESI
Trigger: TATGCTCTCAGAGCCCCAGCACATTGTCATCCAATG...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGTCAAACCAGAACAACTCTaGCTGTACATTTCTGCATCT +
Preference number: 4 (lower is better)
Translates to: YQLCTCSASLDHIIIIIVKPEQL*LYISAS
Trigger: AGATGCAGAAATGTACAGCCAGAGTTGTTCTGGTTT...GACGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp ATGCTTGCATCTATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTCTCTTCATGTCTCTTTaGTCTGCAAACTGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: MLASMTTGVFPRLSMSTVLFMSL*SANCPS
Trigger: TGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAG...AACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCATAGATGCAAGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTGCACACAGAAGAAGGTaGCACCAGAACCATCATGGC +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIAHRRR*HQNHHG
Trigger: GCCATGATGGTTCTGGTGCCACCTTCTTCTGTGTGC...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
3UTR CAA 72 bp CAAATTTCCATGCTTACTGGCAAGAATTTTTGCCCATaGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTTCT +
Preference number: 4 (lower is better)
Translates to: QISMLTGKNFCP*CYLLSSPFQVS
Trigger: AGAAACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGTAAGCATGGAAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp AATGGCTACTCCAGCTTGTTTCTTGGGACCATTTGCTaGGGAAATTGTTTTCCAGCCTTTTACTCTGAGTTA +
Preference number: 4 (lower is better)
Translates to: NGYSSLFLGTIC*GNCFPAFYSEL
Trigger: TAACTCAGAGTAAAAGGCTGGAAAACAATTTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGTAGCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp AGAGTTGAGTGGTCACTAAATCTCAGTCATTCAAAGTaGTATCTCCTTCTCCTGAGATTTCCTAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: RVEWSLNLSHSK*YLLLLRFPSSS
Trigger: AGAGGAGCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGACCACTCAACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp CCCTACCCCTTCCATGATTTTGTACTAGGTAAATCCACCAATCCATGTTTCATGGCAAGCCATACAAGATaGGCTGGAAATTATAATTGC +
Preference number: 4 (lower is better)
Translates to: PYPFHDFVLGKSTNPCFMASHTR*AGNYNC
Trigger: GCAATTATAATTTCCAGCTCATCTTGTATGGCTTGC...CATGAAACATGGATTGGTGGATTTACCTAGTACAAAATCATGGAAGGGGTAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCACCTTTCTGAGGACATaGAGCAGTTCTGGAAATGGA +
Preference number: 4 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSTFLRT*SSSGNG
Trigger: TCCATTTCCAGAACTGCTTCATGTCCTCAGAAAGGT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR GCA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTCATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIHVSLV*KLSLRA
Trigger: TGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATG...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATATGAAGGATGGAAACTaGATCTTGTCACTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYMKDGN*ILSLRL
Trigger: CAGCCTGAGTGACAAGATCCAGTTTCCATCCTTCAT...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACAAGCAGTTCTGGAAATaGATGTGGCTTGTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: SYLATVKITAHHKRGCLDKQFWK*MWLVFQ
Trigger: CTGAAAAACAAGCCACATCCATTTCCAGAACTGCTT...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATGCACCAGAACCATCATaGCATTGGATGACAATGTGC +
Preference number: 4 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYAPEPS*HWMTMC
Trigger: GCACATTGTCATCCAATGCCATGATGGTTCTGGTGC...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
3UTR CAA 72 bp TTCCTGTTATTTTTGTTGTTGGAGGTGGGATTCTGTTaGCACGGCTATCTTCTTTGGGGTTCACTGAAATAT +
Preference number: 4 (lower is better)
Translates to: FLLFLLLEVGFC*HGYLLWGSLKY
Trigger: ATATTTCAGTGAACCCCAAAGAAGATAGCCGTGCAAACAGAATCCCACCTCCAACAACAAAAATAACAGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp TTGTTTGATATTAGAATGGCTACTCCAGCTTGTTTCTaGGGACCATTTGCTTGGGAAATTGTTTTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: LFDIRMATPACF*GPFAWEIVFQP
Trigger: AGGCTGGAAAACAATTTCCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGTAGCCATTCTAATATCAAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATTTCTTATTTATAAACCAGAACAACTCTaGCTGTACATTTCTGCATCT +
Preference number: 4 (lower is better)
Translates to: WDWLQSFCPRSAYLFLIYKPEQL*LYISAS
Trigger: AGATGCAGAAATGTACAGCCAGAGTTGTTCTGGTTT...ATAAATAAGAAATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CCA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCAAGCAGTTCTGGAAATaGATGTGGCTTGTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSKQFWK*MWLVFQ
Trigger: CTGAAAAACAAGCCACATCCATTTCCAGAACTGCTT...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp CTATCATCATCACAAGAAGTGATTTTAGATCCTAATTaGCTTTTCTGGTGTGATGGTGTATCCAGGACTTGC +
Preference number: 4 (lower is better)
Translates to: LSSSQEVILDPN*LFWCDGVSRTC
Trigger: GCAAGTCCTGGATACACCATCACACCAGAAAAGCAAATTAGGATCTAAAATCACTTCTTGTGATGATGATAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR TCA 90 bp GTTCTCATGTATTGCTTTAAGGAAGTTACTTATCTCCTTCCTAAAGTCCTCTATGCAAGCCATACAAGATaGGCTGGAAATTATAATTGC +
Preference number: 4 (lower is better)
Translates to: VLMYCFKEVTYLLPKVLYASHTR*AGNYNC
Trigger: GCAATTATAATTTCCAGCTCATCTTGTATGGCTTGC...ATAGAGGACTTTAGGAAGGAGATAAGTAACTTCCTTAAAGCAATACATGAGAAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp AATCTTCACTCTCTTCTATACATTTTATCCATAGGTTaGGTCTTCTCATTGTGTCCTGGATGTTTTGGGTTA +
Preference number: 4 (lower is better)
Translates to: NLHSLLYILSIG*VFSLCPGCFGL
Trigger: TAACCCAAAACATCCAGGACACAATGAGAAGACCAAACCTATGGATAAAATGTATAGAAGAGAGTGAAGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
3UTR CAA 72 bp TTAGAAGACATTATATACTCAGGTTTCCAAAATTACTaGAGAACCGGAATGTTTTGCCTAGAATCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: LEDIIYSGFQNY*RTGMFCLESAD
Trigger: ATCAGCAGATTCTAGGCAAAACATTCCGGTTCTCAAGTAATTTTGGAAACCTGAGTATATAATGTCTTCTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGGCAGGTGGTGACAGTGGGTCTCCCAAGGAAGAGCAAGGCACACAGGGCACACGCAACAGCCAGGCTCTaGCTCCAGAAAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: RQVVTVGLPRKSKAHRAHATARL*LQKGQS
Trigger: GCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGC...GTGTGCCCTGTGTGCCTTGCTCTTCCTTGGGAGACCCACTGTCACCACCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS TCA 90 bp AGCCATGCTGGCATGTGTAGTTGGGGATGGGCTCCTCCTGCCCTGTaGGAAAGCCCATTGTTTCATAGAGGGCTCCATGCGCTGAGTCCC +
Preference number: 5 (lower is better)
Translates to: SHAGMCSWGWAPPAL*ESPLFHRGLHALSP
Trigger: GGGACTCAGCGCATGGAGCCCTCTATGAAACAATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCCCAACTACACATGCCAGCATGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 90 bp CCCCACGATTACATCTCCAGGACGATCAAAATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGCTCCAGAAAGGGCAGAGCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: PHDYISRTIKMRALP*QQPGSCSRKGRARG
Trigger: CCCTCTGGCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATTTTGATCGTCCTGGAGATGTAATCGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGAGCATATCCTTGTCTGGGAATGGTGGGAAGGTGGCCAACCACACCCCACAGATCCCAGTCTGGGCACTaGGCTGAACCCTGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: RAYPCLGMVGRWPTTPHRSQSGH*AEPWKA
Trigger: TGCCTTCCAGGGTTCAGCCAAGTGCCCAGACTGGGA...TCTGTGGGGTGTGGTTGGCCACCTTCCCACCATTCCCAGACAAGGATATGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS TCA 90 bp AAACTTGTACAGCCCCAGAAGTCTGGCCATGGAGACAGACAGGGATaGCCGTGTGTCCCCAACCAAAGCAGCCTGAGGAGAGCCATGCTG +
Preference number: 5 (lower is better)
Translates to: KLVQPQKSGHGDRQG*PCVPNQSSLRRAML
Trigger: CAGCATGGCTCTCCTCAGGCTGCTTTGGTTGGGGACACACGGTCATCCCTGTCTGTCTCCATGGCCAGACTTCTGGGGCTGTACAAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 90 bp TGCAACACCTGGGAAATGCCTGGTATGGTCAGGGCAAGTGCCATGTaGAGAGTGTCTTTGCTGACCCACACCTGTCCTGAGACAGGGACA +
Preference number: 5 (lower is better)
Translates to: CNTWEMPGMVRASAM*RVSLLTHTCPETGT
Trigger: TGTCCCTGTCTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGCACATGGCACTTGCCCTGACCATACCAGGCATTTCCCAGGTGTTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACTCCCAGTCTGGGCACTaGGCTGAACCCTGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYSQSGH*AEPWKA
Trigger: TGCCTTCCAGGGTTCAGCCAAGTGCCCAGACTGGGA...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TTCTTGGCCCTGGTGTTCCCCTCTGGTTTCCTGCTGTTGGAGGAAATGAACTACCCCACATGGAAACGCTaGAAGTCTGCAGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: FLALVFPSGFLLLEEMNYPTWKR*KSAAQL
Trigger: CAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGGG...GTAGTTCATTTCCTCCAACAGCAGGAAACCAGAGGGGAACACCAGGGCCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAGATGGAAACTGGATCTaGTCACTCAGGCTGGGTAGT +
Preference number: 5 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEDGNWI*SLRLGS
Trigger: ACTACCCAGCCTGAGTGACAAGATCCAGTTTCCATC...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATGCAACAGCCAGGCTCTaGCTCCAGAAAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYATARL*LQKGQS
Trigger: GCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGC...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 90 bp TGCTGTGATACAGAAGGCCAAATGTGCCTTGCAACACCTGGGAAATaGCTGGTATGGTCAGGGCAAGTGCCATGTGCAGAGTGTCTTTGC +
Preference number: 5 (lower is better)
Translates to: CCDTEGQMCLATPGK*LVWSGQVPCAECLC
Trigger: GCAAAGACACTCTGCACATGGCACTTGCCCTGACCATACCAGGCATTTCCCAGGTGTTGCAAGGCACATTTGGCCTTCTGTATCACAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 90 bp CTGCTCCTTGGGGCACAGAAGACATCTCTTCATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCATGGGCTGCAATCAAAACAGCAGTG +
Preference number: 5 (lower is better)
Translates to: LLLGAQKTSLHVSLV*KLSLRAWAAIKTAV
Trigger: CACTGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAGATGTCTTCTGTGCCCCAAGGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS CCA 90 bp GTGATACAGAAGGCCAAATGTGCCTTGCAACACCTGGGAAATGCCTaGTATGGTCAGGGCAAGTGCCATGTGCAGAGTGTCTTTGCTGAC +
Preference number: 5 (lower is better)
Translates to: VIQKAKCALQHLGNA*YGQGKCHVQSVFAD
Trigger: GTCAGCAAAGACACTCTGCACATGGCACTTGCCCTGACCATACCAGGCATTTCCCAGGTGTTGCAAGGCACATTTGGCCTTCTGTATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAAAGATGATGCAGCACTaGGGAATAAAGATGCCACCC +
Preference number: 5 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEKMMQH*GIKMPP
Trigger: GGGTGGCATCTTTATTCCCAAGTGCTGCATCATCTT...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TCTGGGTGTTGTGGGACTGGCTGCAGAGTTTTTGTCCAAGGTCTGCCTATTTATAATGAGGGCTCTGCCTaGGCAACAGCCAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: SGCCGTGCRVFVQGLPIYNEGSA*ATARLL
Trigger: CAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATT...ATAAATAGGCAGACCTTGGACAAAAACTCTGCAGCCAGTCCCACAACACCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 90 bp GAGTACTGCTCCTTGGGGCACAGAAGACATCTCTTCATGTCTCTTTaGTCTGCAAACTGTCCCTCAGGGCATGGGCTGCAATCAAAACAG +
Preference number: 5 (lower is better)
Translates to: EYCSLGHRRHLFMSL*SANCPSGHGLQSKQ
Trigger: CTGTTTTGATTGCAGCCCATGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAGATGTCTTCTGTGCCCCAAGGAGCAGTACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp GCTGAGACCACACTGGAAACTCTAGGCTTGCAGGCCGTAGGGAGAATATTGTTCGATGGAAACTGGATCTaGTCACTCAGGCTGGGTAGT +
Preference number: 5 (lower is better)
Translates to: AETTLETLGLQAVGRILFDGNWI*SLRLGS
Trigger: ACTACCCAGCCTGAGTGACAAGATCCAGTTTCCATC...GAACAATATTCTCCCTACGGCCTGCAAGCCTAGAGTTTCCAGTGTGGTCTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTGCAACAGCCAGGCTCTaGCTCCAGAAAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVATARL*LQKGQS
Trigger: GCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGC...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAAATGAGGGCTCTGCCTaGGCAACAGCCAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTNEGSA*ATARLL
Trigger: CAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATT...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGAATGAGGGCTCTGCCTaGGCAACAGCCAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: PISCAHAQQALTTSSLSSNEGSA*ATARLL
Trigger: CAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATT...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp CCTATCAGTTGTGCACATGCTCAGCAAGCCTTGACCACATCATCATTATCATCGCCCACATGGAAACGCTaGAAGTCTGCAGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: PISCAHAQQALTTSSLSSPTWKR*KSAAQL
Trigger: CAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGGG...CGATGATAATGATGATGTGGTCAAGGCTTGCTGAGCATGTGCACAACTGATAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp ACTGGCAAGAATTTTTGCCCATTGTGCTATCTTCTGAGCTCCCCTTTCCAAGTTCCCACATGGAAACGCTaGAAGTCTGCAGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: TGKNFCPLCYLLSSPFQVPTWKR*KSAAQL
Trigger: CAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGGG...AACTTGGAAAGGGGAGCTCAGAAGATAGCACAATGGGCAAAAATTCTTGCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 90 bp TTTCACTGCAGACAGAGGTGGGCACTGGACCATCATTTTGTTCCCTaGAGAGGCTTGAGGGTCTATCAAGCCAACACAGACCAAGTGAAA +
Preference number: 5 (lower is better)
Translates to: FHCRQRWALDHHFVP*RGLRVYQANTDQVK
Trigger: TTTCACTTGGTCTGTGTTGGCTTGATAGACCCTCAAGCCTCTTCAGGGAACAAAATGATGGTCCAGTGCCCACCTCTGTCTGCAGTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS-3UTR CAA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAAGTCACCAAATCTCCATaGGCATCAAACATAATCTCA +
Preference number: 5 (lower is better)
Translates to: SSWDHGCVRAPGSGASSEVTKSP*ASNIIS
Trigger: TGAGATTATGTTTGATGCCAATGGAGATTTGGTGAC...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp ATGACTACTGGTGTCTTTCCTAGGTTATCTATGTCCACTGTTGTCTCCCTTTGTAATGAGGGCTCTGCCTaGGCAACAGCCAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: MTTGVFPRLSMSTVVSLCNEGSA*ATARLL
Trigger: CAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATT...ACAAAGGGAGACAACAGTGGACATAGATAACCTAGGAAAGACACCAGTAGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTCCCACATGGAAACGCTaGAAGTCTGCAGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLPTWKR*KSAAQL
Trigger: CAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGGG...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 90 bp AAGTCATCATCATGGGCAAGAATGATCACCCAGGACCACTGGAAGTaGATTATCAGCTGGGTAACTGCATGGGAGGATGTGAGGTCACTA +
Preference number: 5 (lower is better)
Translates to: KSSSWARMITQDHWK*IISWVTAWEDVRSL
Trigger: TAGTGACCTCACATCCTCCCATGCAGTTACCCAGCTGATAATTCACTTCCAGTGGTCCTGGGTGATCATTCTTGCCCATGATGATGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TTTATCCAAGGTCACAGCTCTGGGCATCATCTGCCAATTACAGGAAGGATGACAGATGGAAACTGGATCTaGTCACTCAGGCTGGGTAGT +
Preference number: 5 (lower is better)
Translates to: FIQGHSSGHHLPITGRMTDGNWI*SLRLGS
Trigger: ACTACCCAGCCTGAGTGACAAGATCCAGTTTCCATC...TGTCATCCTTCCTGTAATTGGCAGATGATGCCCAGAGCTGTGACCTTGGATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGCTCCTGGGATCATGGGTGTGTTAGAGCACCTGGGAGTGGAGCTTCCTCAGAACTGGGCATGCTTCATTaGATACTTCAACATTTTCTT +
Preference number: 5 (lower is better)
Translates to: SSWDHGCVRAPGSGASSELGMLH*ILQHFL
Trigger: AAGAAAATGTTGAAGTATCAAATGAAGCATGCCCAG...TTCTGAGGAAGCTCCACTCCCAGGTGCTCTAACACACCCATGATCCCAGGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCGCAACAGCCAGGCTCTaGCTCCAGAAAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSATARL*LQKGQS
Trigger: GCTCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGC...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 90 bp ATCGGGAGTCTTGAAGTGCACCTTTCTGAGGACATGAAGCAGTTCTaGAAATGGATGTGGCTTGTTTTTCAGACTCTCATTCCCTGTGCA +
Preference number: 5 (lower is better)
Translates to: IGSLEVHLSEDMKQF*KWMWLVFQTLIPCA
Trigger: TGCACAGGGAATGAGAGTCTGAAAAACAAGCCACATCCATTTCCAGAACTGCTTCATGTCCTCAGAAAGGTGCACTTCAAGACTCCCGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 90 bp CCCACACCTGTCCTGAGACAGGGACAGCTAGCAAGCCATACAAGATaGGCTGGAAATTATAATTGCTTAGAAAAACCAGAACAACTCTGG +
Preference number: 5 (lower is better)
Translates to: PTPVLRQGQLASHTR*AGNYNCLEKPEQLW
Trigger: CCAGAGTTGTTCTGGTTTTTCTAAGCAATTATAATTTCCAGCTCATCTTGTATGGCTTGCTAGCTGTCCCTGTCTCAGGACAGGTGTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 90 bp AGTCTTGAAGTGCACCTTTCTGAGGACATGAAGCAGTTCTGGAAATaGATGTGGCTTGTTTTTCAGACTCTCATTCCCTGTGCAGAACTG +
Preference number: 5 (lower is better)
Translates to: SLEVHLSEDMKQFWK*MWLVFQTLIPCAEL
Trigger: CAGTTCTGCACAGGGAATGAGAGTCTGAAAAACAAGCCACATCCATTTCCAGAACTGCTTCATGTCCTCAGAAAGGTGCACTTCAAGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGATGGAAACTGGATCTaGTCACTCAGGCTGGGTAGT +
Preference number: 5 (lower is better)
Translates to: SYLATVKITAHHKRGCLDDGNWI*SLRLGS
Trigger: ACTACCCAGCCTGAGTGACAAGATCCAGTTTCCATC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp GTGGTTGTCAGACAGAGTTCAAAGTACAAATTAGTGATGTCACTTCACTACATCATGTGCAGAGTGTCTTaGCTGACCCACACCTGTCCT +
Preference number: 5 (lower is better)
Translates to: VVVRQSSKYKLVMSLHYIMCRVS*LTHTCP
Trigger: AGGACAGGTGTGGGTCAGCAAAGACACTCTGCACAT...GATGTAGTGAAGTGACATCACTAATTTGTACTTTGAACTCTGTCTGACAACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp CGTGATGGGAGAAATTTCTTTTCTGGTCTAGTCTGTTTGGAGTTCTGTAGGCTTGTCACCAAATCTCCATaGGCATCAAACATAATCTCA +
Preference number: 5 (lower is better)
Translates to: RDGRNFFSGLVCLEFCRLVTKSP*ASNIIS
Trigger: TGAGATTATGTTTGATGCCAATGGAGATTTGGTGAC...AAGCCTACAGAACTCCAAACAGACTAGACCAGAAAAGAAATTTCTCCCATCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACGTCACCAAATCTCCATaGGCATCAAACATAATCTCA +
Preference number: 5 (lower is better)
Translates to: SYLATVKITAHHKRGCLDVTKSP*ASNIIS
Trigger: TGAGATTATGTTTGATGCCAATGGAGATTTGGTGAC...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp AGTTACCTAGCAACAGTAAAGATAACAGCACACCATAAGAGGGGATGTTTGGACCTGGGCATGCTTCATTaGATACTTCAACATTTTCTT +
Preference number: 5 (lower is better)
Translates to: SYLATVKITAHHKRGCLDLGMLH*ILQHFL
Trigger: AAGAAAATGTTGAAGTATCAAATGAAGCATGCCCAG...GTCCAAACATCCCCTCTTATGGTGTGCTGTTATCTTTACTGTTGCTAGGTAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp GTTGGTGTCTTCCATCTATTATCCAATGTAGGGCTGGATTTATGGAAAAATATTAAGATGATGCAGCACTaGGGAATAAAGATGCCACCC +
Preference number: 5 (lower is better)
Translates to: VGVFHLLSNVGLDLWKNIKMMQH*GIKMPP
Trigger: GGGTGGCATCTTTATTCCCAAGTGCTGCATCATCTT...AATATTTTTCCATAAATCCAGCCCTACATTGGATAATAGATGGAAGACACCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS-3UTR CAA 90 bp TCACTAAATCTCAGTCATTCAAAGTTGTATCTCCTTCTCCTGAGATTTCCTAGCGTCACCAAATCTCCATaGGCATCAAACATAATCTCA +
Preference number: 5 (lower is better)
Translates to: SLNLSHSKLYLLLLRFPSVTKSP*ASNIIS
Trigger: TGAGATTATGTTTGATGCCAATGGAGATTTGGTGAC...GCTAGGAAATCTCAGGAGAAGGAGATACAACTTTGAATGACTGAGATTTAGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 72 bp ACTCTGGGCCACCCGGTAGCCCCACATGGAAACGCTTaGAGTCTGCAGCCCAGCTGGCGGGGCAGTGAAATT +
Preference number: 6 (lower is better)
Translates to: TLGHPVAPHGNA*SLQPSWRGSEI
Trigger: AATTTCACTGCCCCGCCAGCTGGGCTGCAGACTTCAAGCGTTTCCATGTGGGGCTACCGGGTGGCCCAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 72 bp TGTCCCTCAGGGCATGGGCTGCAATCAAAACAGCAGTaGGGGGCTCCCAGTCTGGGCACTTGGCTGAACCCT +
Preference number: 6 (lower is better)
Translates to: CPSGHGLQSKQQ*GAPSLGTWLNP
Trigger: AGGGTTCAGCCAAGTGCCCAGACTGGGAGCCCCCCACTGCTGTTTTGATTGCAGCCCATGCCCTGAGGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 72 bp CAGCCCCAGAAGTCTGGCCATGGAGACAGACAGGGATaGCCGTGTGTCCCCAACCAAAGCAGCCTGAGGAGA +
Preference number: 6 (lower is better)
Translates to: QPQKSGHGDRQG*PCVPNQSSLRR
Trigger: TCTCCTCAGGCTGCTTTGGTTGGGGACACACGGTCATCCCTGTCTGTCTCCATGGCCAGACTTCTGGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 72 bp CCCCAGCTGGGGTTAGCACCTGACTGGCCAGAGAGCTaGCCTGCTGCCCAAAGTCATCATCATGGGCAAGAA +
Preference number: 6 (lower is better)
Translates to: PQLGLAPDWPES*PAAQSHHHGQE
Trigger: TTCTTGCCCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCTGGCCAGTCAGGTGCTAACCCCAGCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 72 bp TGGGAAATGCCTGGTATGGTCAGGGCAAGTGCCATGTaGAGAGTGTCTTTGCTGACCCACACCTGTCCTGAG +
Preference number: 6 (lower is better)
Translates to: WEMPGMVRASAM*RVSLLTHTCPE
Trigger: CTCAGGACAGGTGTGGGTCAGCAAAGACACTCTGCACATGGCACTTGCCCTGACCATACCAGGCATTTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 72 bp CAACACCTGGGAAATGCCTGGTATGGTCAGGGCAAGTaGCATGTGCAGAGTGTCTTTGCTGACCCACACCTG +
Preference number: 6 (lower is better)
Translates to: QHLGNAWYGQGK*HVQSVFADPHL
Trigger: CAGGTGTGGGTCAGCAAAGACACTCTGCACATGGCACTTGCCCTGACCATACCAGGCATTTCCCAGGTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CCA 72 bp TACATCTCCAGGACGATCAAAATGAGGGCTCTGCCTTaGCAACAGCCAGGCTCTTGCTCCAGAAAGGGCAGA +
Preference number: 6 (lower is better)
Translates to: YISRTIKMRALP*QQPGSCSRKGR
Trigger: TCTGCCCTTTCTGGAGCAAGAGCCTGGCTGTTGCCAAGGCAGAGCCCTCATTTTGATCGTCCTGGAGATGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 72 bp AGGACTGATGGGAAGGGACATAGAGGTAGAATTCAATaGAAACCCCAGCTGGGGTTAGCACCTGACTGGCCA +
Preference number: 6 (lower is better)
Translates to: RTDGKGHRGRIQ*KPQLGLAPDWP
Trigger: TGGCCAGTCAGGTGCTAACCCCAGCTGGGGTTTGCATTGAATTCTACCTCTATGTCCCTTCCCATCAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 72 bp AGCCAAAGAGAACAGGAAGGAGAGTACACAGCCACATaGCTGCTAGGGGGTCAGACAACCAATGACAGGACA +
Preference number: 6 (lower is better)
Translates to: SQREQEGEYTAT*LLGGQTTNDRT
Trigger: TGTCCTGTCATTGGTTGTCTGACCCCCTAGCAGGCATGTGGCTGTGTACTCTCCTTCCTGTTCTCTTTGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CAA 90 bp CGAGTACTGCTCCTTGGGGCACAGAAGACATCTCTTCATGTCTCTTaGGTCTGCAAACTGTCCCTCAGGGCATGGGCTGCAATCAAAACA +
Preference number: 6 (lower is better)
Translates to: RVLLLGAQKTSLHVS*VCKLSLRAWAAIKT
Trigger: TGTTTTGATTGCAGCCCATGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAGATGTCTTCTGTGCCCCAAGGAGCAGTACTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS TCA 72 bp GAGAAAGCCCATTGTTTCATAGAGGGCTCCATGCGCTaGGTCCCCAGAGTTTCGAATAGAGAAGCCCAGTGT +
Preference number: 6 (lower is better)
Translates to: EKAHCFIEGSMR*VPRVSNREAQC
Trigger: ACACTGGGCTTCTCTATTCGAAACTCTGGGGACTCAGCGCATGGAGCCCTCTATGAAACAATGGGCTTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 72 bp TCTTGTCACTCAGGCTGGGTAGTGAAGATGAGTAACTaGCCTGGGGAAACTTGTACAGCCCCAGAAGTCTGG +
Preference number: 6 (lower is better)
Translates to: SCHSGWVVKMSN*PGETCTAPEVW
Trigger: CCAGACTTCTGGGGCTGTACAAGTTTCCCCAGGTCAGTTACTCATCTTCACTACCCAGCCTGAGTGACAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS TCA 72 bp AGACAGAGGTGGGCACTGGACCATCATTTTGTTCCCTaGAGAGGCTTGAGGGTCTATCAAGCCAACACAGAC +
Preference number: 6 (lower is better)
Translates to: RQRWALDHHFVP*RGLRVYQANTD
Trigger: GTCTGTGTTGGCTTGATAGACCCTCAAGCCTCTTCAGGGAACAAAATGATGGTCCAGTGCCCACCTCTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233373.2
ENSMUST00000233874.2
CDS GCA 72 bp GGGGCACAGAAGACATCTCTTCATGTCTCTTTGGTCTaGAAACTGTCCCTCAGGGCATGGGCTGCAATCAAA +
Preference number: 6 (lower is better)
Translates to: GAQKTSLHVSLV*KLSLRAWAAIK
Trigger: TTTGATTGCAGCCCATGCCCTGAGGGACAGTTTGCAGACCAAAGAGACATGAAGAGATGTCTTCTGTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS CCA 72 bp GTGCACCTTTCTGAGGACATGAAGCAGTTCTGGAAATaGATGTGGCTTGTTTTTCAGACTCTCATTCCCTGT +
Preference number: 6 (lower is better)
Translates to: VHLSEDMKQFWK*MWLVFQTLIPC
Trigger: ACAGGGAATGAGAGTCTGAAAAACAAGCCACATCCATTTCCAGAACTGCTTCATGTCCTCAGAAAGGTGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS GCA 72 bp CTTAGAAAAACCAGAACAACTCTGGCTGTACATTTCTaGATCTTCCGGACAGTCTCTTCAATCTTCCCCAAG +
Preference number: 6 (lower is better)
Translates to: LRKTRTTLAVHF*IFRTVSSIFPK
Trigger: CTTGGGGAAGATTGAAGAGACTGTCCGGAAGATGCAGAAATGTACAGCCAGAGTTGTTCTGGTTTTTCTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2
ENSMUST00000233874.2
ENSMUST00000233902.2
CDS CAA 72 bp ACTGCAGACAGAGGTGGGCACCTGGGCATGCTTCATTaGATACTTCAACATTTTCTTTTGGACCATCATTTT +
Preference number: 6 (lower is better)
Translates to: TADRGGHLGMLH*ILQHFLLDHHF
Trigger: AAAATGATGGTCCAAAAGAAAATGTTGAAGTATCAAATGAAGCATGCCCAGGTGCCCACCTCTGTCTGCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233902.2
CDS GCA 72 bp GCTCATAGGATATCATATCATGTAGGGCATGAGCAATaGTGTAGACAGCTGTGTAAGCAGCATCAATTTTAC +
Preference number: 6 (lower is better)
Translates to: AHRISYHVGHEQ*CRQLCKQHQFY
Trigger: GTAAAATTGATGCTGCTTACACAGCTGTCTACAGCATTGCTCATGCCCTACATGATATGATATCCTATGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000163852.2
ENSMUST00000233304.2
ENSMUST00000233373.2