RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R52 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091930

Ensembl transcript IDs: ENSMUST00000164918.3, ENSMUST00000232927.2

Found 202 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACCCACTTCCCACCCTTGGAGGCTGCACACTCCAATTCATTCTCCTaGCTCTCTGGACTTCTCTCAAGCACCCCTCTCCACAAACAACTG +
Preference number: 1 (lower is better)
Translates to: THFPPLEAAHSNSFS*LSGLLSSTPLHKQL
Trigger: CAGTTGTTTGTGGAGAGGGGTGCTTGAGAGAAGTCCAGAGAGCCAGGAGAATGAATTGGAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 90 bp TACAACTCCTCATCCCATTCTTCCTCCCACTTGCCTCTCATAGAGTaGTTACTAACTTCCCTCTCTGCCCCTACACCAGGCATTTCACTT +
Preference number: 1 (lower is better)
Translates to: YNSSSHSSSHLPLIE*LLTSLSAPTPGISL
Trigger: AAGTGAAATGCCTGGTGTAGGGGCAGAGAGGGAAGTTAGTAAGCACTCTATGAGAGGCAAGTGGGAGGAAGAATGGGATGAGGAGTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp TCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAATaGGGTCAGACAAGGCAGTCTATGCTGCATATGTGTCAAGGACCT +
Preference number: 1 (lower is better)
Translates to: SGISGFWGVRCAFYQ*GQTRQSMLHMCQGP
Trigger: AGGTCCTTGACACATATGCAGCATAGACTGCCTTGTCTGACCTCATTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 90 bp TGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTaGTCCTTCACCTGCTTGCTGTGTGAGACTGAGTACCTGCTAGAT +
Preference number: 1 (lower is better)
Translates to: CWRQYKDIGRRESSS*SFTCLLCETEYLLD
Trigger: ATCTAGCAGGTACTCAGTCTCACACAGCAAGCAGGTGAAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp ACATACTATGTGTGTCTTTTTGGGAATTGGGTTACAAGAGCAAACTaGCCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCAC +
Preference number: 1 (lower is better)
Translates to: TYYVCLFGNWVTRAN*PERAEVLNSIPSSH
Trigger: GTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 90 bp TATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCCTTCACCTaGTTGCTGTGTGAGACTGAGTACCTGCTAGATCCTTGGAATTCT +
Preference number: 1 (lower is better)
Translates to: YKDIGRRESSSCSFT*LLCETEYLLDPWNS
Trigger: AGAATTCCAAGGATCTAGCAGGTACTCAGTCTCACACAGCAAGCAGGTGAAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 90 bp TCCATTAAATATCTGCCCCCATGCCTTAGGAAGCACCATGACAGATaGAGACAAAGGAATGTAACAGCTGAGAGAATGGAGGACACCAAG +
Preference number: 1 (lower is better)
Translates to: SIKYLPPCLRKHHDR*RQRNVTAERMEDTK
Trigger: CTTGGTGTCCTCCATTCTCTCAGCTGTTACATTCCTTTGTCTCCATCTGTCATGGTGCTTCCTAAGGCATGGGGGCAGATATTTAATGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp TCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGGAGATCATaGGCCAAAGTGGCTATGGATTCCAGAAGATTGAATCTCCGAGTT +
Preference number: 1 (lower is better)
Translates to: SGGLEILIWILVWRS*AKVAMDSRRLNLRV
Trigger: AACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTTTGGCTCATGATCTCCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 90 bp TGTGTATGTATTTTTGCCTACCTGTGTGTCAGTGTAGCACATGAATaGAATGTCTATGGAGTCCTGAGTAGGGCAGAAGATACACTGGAA +
Preference number: 1 (lower is better)
Translates to: CVCIFAYLCVSVAHE*NVYGVLSRAEDTLE
Trigger: TTCCAGTGTATCTTCTGCCCTACTCAGGACTCCATAGACATTGCATTCATGTGCTACACTGACACACAGGTAGGCAAAAATACATACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 90 bp GGCAAATATCTACTTATCAGTGAGTACATACTATGTGTGTCTTTTTaGGAATTGGGTTACAAGAGCAAACTGACCAGAGCGAGCAGAGGT +
Preference number: 1 (lower is better)
Translates to: GKYLLISEYILCVSF*ELGYKSKLTRASRG
Trigger: ACCTCTGCTCGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGATAAGTAGATATTTGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp GAGCAGAAAAAGAACATTTCCATTTTAGACCATTGTCTGATAGCTTaGAGAGCAGCTGAAGAGAACAGGCAATATCTCTCATGTGTGTGC +
Preference number: 1 (lower is better)
Translates to: EQKKNISILDHCLIA*RAAEENRQYLSCVC
Trigger: GCACACACATGAGAGATATTGCCTGTTCTCTTCAGCTGCTCTTCAAGCTATCAGACAATGGTCTAAAATGGAAATGTTCTTTTTCTGCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp CTTTCTGTGTCCTGTGGTTATTTTGTTTCCCCTTCTAAGTGGGATTaGAACATTCTCTCTTATTCCTTCCTAAAGGTTGAACTTCTTAAG +
Preference number: 1 (lower is better)
Translates to: LSVSCGYFVSPSKWD*NILSYSFLKVELLK
Trigger: CTTAAGAAGTTCAACCTTTAGGAAGGAATAAGAGAGAATGTTTCAATCCCACTTAGAAGGGGAAACAAAATAACCACAGGACACAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp GTATCTTGGGTATTCTGTACTTTTCGGCAAATATCTACTTATCAGTaGGTACATACTATGTGTGTCTTTTTGGGAATTGGGTTACAAGAG +
Preference number: 1 (lower is better)
Translates to: VSWVFCTFRQISTYQ*VHTMCVFLGIGLQE
Trigger: CTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGATAAGTAGATATTTGCCGAAAAGTACAGAATACCCAAGATAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 90 bp CCTTTGAGATTATCTTCCTCCAGAAACTCAATCACAACTGCAAACTaGGTGCAGTCTCTGAGAAAAATTAGTTTTATGCAAATATCACTA +
Preference number: 1 (lower is better)
Translates to: PLRLSSSRNSITTAN*VQSLRKISFMQISL
Trigger: TAGTGATATTTGCATAAAACTAATTTTTCTCAGAGACTGCACTCAGTTTGCAGTTGTGATTGAGTTTCTGGAGGAAGATAATCTCAAAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACAGCCTCAGGCTCCCATaGCACCCTTTGAGATTATCT +
Preference number: 2 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHSLRLP*HPLRLS
Trigger: AGATAATCTCAAAGGGTGGCATGGGAGCCTGAGGCT...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp TCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTTCCTCCCACTaGCCTCTCATAGAGTGCTTACTAACTTCCCTCTCTGCCCCTACA +
Preference number: 2 (lower is better)
Translates to: SASPSYNSSSHSSSH*PLIECLLTSLSAPT
Trigger: TGTAGGGGCAGAGAGGGAAGTTAGTAAGCACTCTATGAGAGGCAAGTGGGAGGAAGAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCAGCCTCAGGCTCCCATaGCACCCTTTGAGATTATCT +
Preference number: 2 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLSLRLP*HPLRLS
Trigger: AGATAATCTCAAAGGGTGGCATGGGAGCCTGAGGCT...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACCTTCTGATCATTCTATaGGGCACCATTCTCTTCAGC +
Preference number: 2 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHLLIIL*GTILFS
Trigger: GCTGAAGAGAATGGTGCCCCATAGAATGATCAGAAG...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCAGCTTGAAGAGCAGCTaGAGAGAACAGGCAATATCT +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFSLKSS*REQAIS
Trigger: AGATATTGCCTGTTCTCTTCAGCTGCTCTTCAAGCT...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCCTTCTGATCATTCTATaGGGCACCATTCTCTTCAGC +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFLLIIL*GTILFS
Trigger: GCTGAAGAGAATGGTGCCCCATAGAATGATCAGAAG...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCGTTTCTGAGAGGTTCTaGTTGTCCATGTTAGTTGAG +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFVSERF*LSMLVE
Trigger: CTCAACTAACATGGACAACCAGAACCTCTCAGAAAC...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTGTGTGTGCTCCTATTaGAAATCAGAAAATGTGCTC +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFCVCSY*KSENVL
Trigger: GAGCACATTTTCTGATTTTCAATAGGAGCACACACA...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCTGTGTGTGCTCCTATTaGAAATCAGAAAATGTGCTC +
Preference number: 2 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLCVCSY*KSENVL
Trigger: GAGCACATTTTCTGATTTTCAATAGGAGCACACACA...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCCTATGTGTGTCTTTTTaGGAATTGGGTTACAAGAGC +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFLCVSF*ELGYKS
Trigger: GCTCTTGTAACCCAATTCCCAAAAAGACACACATAG...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp TCTTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATaGGAAGAAGGGAGTCTAGCTCTTGCTCCTTCACCTGCTTGCTGT +
Preference number: 2 (lower is better)
Translates to: SLIWATPSAGDNIRT*EEGSLALAPSPACC
Trigger: ACAGCAAGCAGGTGAAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCGCTCCACTTACATGGTaGCCAGGAAATATAATATAT +
Preference number: 2 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFAPLTW*PGNIIY
Trigger: ATATATTATATTTCCTGGTCACCATGTAAGTGGAGC...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCAGGGAGTCTAGCTCTTaGTCCTTCACCTGCTTGCTG +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSRESSS*SFTCLL
Trigger: CAGCAAGCAGGTGAAGGAGCAAGAGCTAGACTCCCT...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAAGGGAGTCTAGCTCTTaGTCCTTCACCTGCTTGCTG +
Preference number: 2 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIRESSS*SFTCLL
Trigger: CAGCAAGCAGGTGAAGGAGCAAGAGCTAGACTCCCT...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAGGAATCTCAGGATTCTaGGGTGTTAGGTGTGCCTTC +
Preference number: 2 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIGISGF*GVRCAF
Trigger: GAAGGCACACCTAACACCCCAGAATCCTGAGATTCC...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp CTGGTTGTCAACTTGACTATATTTGGAATGAACTACAATCCAGAATaGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCT +
Preference number: 2 (lower is better)
Translates to: LVVNLTIFGMNYNPE*EGSPVTLIWRLGDP
Trigger: AGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp ACTAATACACCCCCTGACTCTTCTGCATTTCTTACCTCTTCCCCCATCTCCAAGTCATTTTTCTTCCATTaGGATTTGCCCCTGGTAACT +
Preference number: 2 (lower is better)
Translates to: TNTPPDSSAFLTSSPISKSFFFH*DLPLVT
Trigger: AGTTACCAGGGGCAAATCTCAATGGAAGAAAAATGA...CTTGGAGATGGGGGAAGAGGTAAGAAATGCAGAAGAGTCAGGGGGTGTATTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCAGCTTGAAGAGCAGCTaGAGAGAACAGGCAATATCT +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSSLKSS*REQAIS
Trigger: AGATATTGCCTGTTCTCTTCAGCTGCTCTTCAAGCT...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCAAGGACCTTAGTTTCTaGGAGGTTCTGGTTGTCCAT +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSKDLSF*EVLVVH
Trigger: ATGGACAACCAGAACCTCTCAGAAACTAAGGTCCTT...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGAGCGAGCAGAGGTCCTaGATTCAATTCCCAGCAGCC +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKSEQRS*IQFPAA
Trigger: GGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCT...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATACAAGGCAGTCTATGCTaGATATGTGTCAAGGACCTT +
Preference number: 2 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIQGSLC*ICVKDL
Trigger: AAGGTCCTTGACACATATGCAGCATAGACTGCCTTG...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGCCCACTTCCCACCCTTaGAGGCTGCACACTCCAATT +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKPTSHP*RLHTPI
Trigger: AATTGGAGTGTGCAGCCTCCAAGGGTGGGAAGTGGG...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp TTGAGACTTCTGATCATTCTATGGGGCACCATTCTCTTCAGCTTCTaGCAACTATTCCCTAATTTAACCACAGGGGTTCTCAGCTTTAGT +
Preference number: 2 (lower is better)
Translates to: LRLLIILWGTILFSF*QLFPNLTTGVLSFS
Trigger: ACTAAAGCTGAGAACCCCTGTGGTTAAATTAGGGAATAGTTGCAAGAAGCTGAAGAGAATGGTGCCCCATAGAATGATCAGAAGTCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp TATCTACTTATCAGTGAGTACATACTATGTGTGTCTTTTTGGGAATaGGGTTACAAGAGCAAACTGACCAGAGCGAGCAGAGGTCCTGAA +
Preference number: 2 (lower is better)
Translates to: YLLISEYILCVSFWE*GYKSKLTRASRGPE
Trigger: TTCAGGACCTCTGCTCGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGATAAGTAGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCGTTTCTGAGAGGTTCTaGTTGTCCATGTTAGTTGAG +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSVSERF*LSMLVE
Trigger: CTCAACTAACATGGACAACCAGAACCTCTCAGAAAC...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAAACACACCTTTAATCTaGGCTACACCTTTCATCTGG +
Preference number: 2 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNINTPLI*ATPFIW
Trigger: CCAGATGAAAGGTGTAGCCCAGATTAAAGGTGTGTT...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGTTTTGTTCCAGCCATTaGACACCATTCTGCATCCCC +
Preference number: 2 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQFCSSH*TPFCIP
Trigger: GGGGATGCAGAATGGTGTCCAATGGCTGGAACAAAA...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCTCTTTCTGTGTCCTGTaGTTATTTTGTTTCCCCTTC +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSSFCVL*LFCFPF
Trigger: GAAGGGGAAACAAAATAACCACAGGACACAGAAAGA...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 90 bp GAAGGATTTATTCTAGTTGCAAACACTCAATTGTCTTTTTGGAAATaGCACTTTCTAGGAAGCAGCATAGTCAAAGCCTCAGGCTCCCAT +
Preference number: 2 (lower is better)
Translates to: EGFILVANTQLSFWK*HFLGSSIVKASGSH
Trigger: ATGGGAGCCTGAGGCTTTGACTATGCTGCTTCCTAGAAAGTGCAATTTCCAAAAAGACAATTGAGTGTTTGCAACTAGAATAAATCCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCCACATTTGGGAAATATaGGTAAGGTTACCTTCATTG +
Preference number: 2 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSHIWEI*VRLPSL
Trigger: CAATGAAGGTAACCTTACCCATATTTCCCAAATGTG...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGAAGGACCTTAGTTTCTaGGAGGTTCTGGTTGTCCAT +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKKDLSF*EVLVVH
Trigger: ATGGACAACCAGAACCTCTCAGAAACTAAGGTCCTT...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR TCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGCCTTCTAAGTGGGATTaGAACATTCTCTCTTATTCC +
Preference number: 2 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQPSKWD*NILSYS
Trigger: GGAATAAGAGAGAATGTTTCAATCCCACTTAGAAGG...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGCAAGGCAGTCTATGCTaGATATGTGTCAAGGACCTT +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKQGSLC*ICVKDL
Trigger: AAGGTCCTTGACACATATGCAGCATAGACTGCCTTG...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGCTGTGTATGTATTTTTaGCTACCTGTGTGTCAGTGT +
Preference number: 2 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQLCMYF*LPVCQC
Trigger: ACACTGACACACAGGTAGGCAAAAATACATACACAG...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGGGATTAAAGGTGTGGTaGAACACATCTTTAATCTGG +
Preference number: 2 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQGLKVW*NTSLIW
Trigger: CCAGATTAAAGATGTGTTCCACCACACCTTTAATCC...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGAGTGTAGCACATGAATaGAATGTCTATGGAGTCCTG +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKSVAHE*NVYGVL
Trigger: CAGGACTCCATAGACATTGCATTCATGTGCTACACT...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGGGGCAGAAGATACACTaGAAAGTCAGTTTCAAAGTG +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKGQKIH*KVSFKV
Trigger: CACTTTGAAACTGACTTTCCAGTGTATCTTCTGCCC...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGAAACTCAATCACAACTaGAAACTGAGTGCAGTCTCT +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKKLNHN*KLSAVS
Trigger: AGAGACTGCACTCAGTTTGCAGTTGTGATTGAGTTT...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR GCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGCTGTGTATGTATTTTTaGCTACCTGTGTGTCAGTGT +
Preference number: 2 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKLCMYF*LPVCQC
Trigger: ACACTGACACACAGGTAGGCAAAAATACATACACAG...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCACCCACTTCCCACCCTaGGAGGCTGCACACTCCAAT +
Preference number: 3 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFTHFPP*EAAHSN
Trigger: ATTGGAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGT...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp TCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTaGACACTCCAATTCATTCTCCTGGCTCTCTGGACT +
Preference number: 3 (lower is better)
Translates to: SLRVHPLPTLGG*TLQFILLALWT
Trigger: AGTCCAGAGAGCCAGGAGAATGAATTGGAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACTGCTCCTTCACCTGCTaGCTGTGTGAGACTGAGTAC +
Preference number: 3 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHCSFTC*LCETEY
Trigger: GTACTCAGTCTCACACAGCAAGCAGGTGAAGGAGCA...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp GGAGGCTGCACACTCCAATTCATTCTCCTGGCTCTCTaGACTTCTCTCAAGCACCCCTCTCCACAAACAACT +
Preference number: 3 (lower is better)
Translates to: GGCTLQFILLAL*TSLKHPSPQTT
Trigger: AGTTGTTTGTGGAGAGGGGTGCTTGAGAGAAGTCCAGAGAGCCAGGAGAATGAATTGGAGTGTGCAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp CTTGCCTCTCATAGAGTGCTTACTAACTTCCCTCTCTaGCCCTACACCAGGCATTTCACTTCTCTGGAGCCT +
Preference number: 3 (lower is better)
Translates to: LASHRVLTNFPL*PYTRHFTSLEP
Trigger: AGGCTCCAGAGAAGTGAAATGCCTGGTGTAGGGGCAGAGAGGGAAGTTAGTAAGCACTCTATGAGAGGCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACGACAATATAAGGACATaGGAAGAAGGGAGTCTAGCT +
Preference number: 3 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHDNIRT*EEGSLA
Trigger: AGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTC...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTGTCCTGTGGTTATTTaGTTTCCCCTTCTAAGTGGG +
Preference number: 3 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFCPVVI*FPLLSG
Trigger: CCCACTTAGAAGGGGAAACAAAATAACCACAGGACA...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCCTCATTTTTCTTCCATaGAGATTTGCCCCTGGTAAC +
Preference number: 3 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLLIFLP*RFAPGN
Trigger: GTTACCAGGGGCAAATCTCAATGGAAGAAAAATGAG...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCGACAATATAAGGACATaGGAAGAAGGGAGTCTAGCT +
Preference number: 3 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLDNIRT*EEGSLA
Trigger: AGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTC...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACTTGTCTTTTTGGAAATaGCACTTTCTAGGAAGCAGC +
Preference number: 3 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHLSFWK*HFLGSS
Trigger: GCTGCTTCCTAGAAAGTGCAATTTCCAAAAAGACAA...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp TCTAGGAAGCAGCATAGTCAAAGCCTCAGGCTCCCATaGCACCCTTTGAGATTATCTTCCTCCAGAAACTCA +
Preference number: 3 (lower is better)
Translates to: SRKQHSQSLRLP*HPLRLSSSRNS
Trigger: TGAGTTTCTGGAGGAAGATAATCTCAAAGGGTGGCATGGGAGCCTGAGGCTTTGACTATGCTGCTTCCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp TATCTGCCCCCATGCCTTAGGAAGCACCATGACAGATaGAGACAAAGGAATGTAACAGCTGAGAGAATGGAG +
Preference number: 3 (lower is better)
Translates to: YLPPCLRKHHDR*RQRNVTAERME
Trigger: CTCCATTCTCTCAGCTGTTACATTCCTTTGTCTCCATCTGTCATGGTGCTTCCTAAGGCATGGGGGCAGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTGCGAGTGAACAATTGTaGGGAATTGGGCTGACGACT +
Preference number: 3 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAASEQL*GIGLTT
Trigger: AGTCGTCAGCCCAATTCCCAACAATTGTTCACTCGC...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCTGCTCCTTCACCTGCTaGCTGTGTGAGACTGAGTAC +
Preference number: 3 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSCSFTC*LCETEY
Trigger: GTACTCAGTCTCACACAGCAAGCAGGTGAAGGAGCA...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCCACTCAATTGTCTTTTaGGAAATTGCACTTTCTAGG +
Preference number: 3 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFHSIVF*EIALSR
Trigger: CCTAGAAAGTGCAATTTCCAAAAAGACAATTGAGTG...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp TCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAATaGGGTCAGACAAGGCAGTCTATGCTGCATATGTGT +
Preference number: 3 (lower is better)
Translates to: SGFWGVRCAFYQ*GQTRQSMLHMC
Trigger: ACACATATGCAGCATAGACTGCCTTGTCTGACCTCATTGATAGAAGGCACACCTAACACCCCAGAATCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp AGCATAGTCAAAGCCTCAGGCTCCCATGCCACCCTTTaGGATTATCTTCCTCCAGAAACTCAATCACAACTG +
Preference number: 3 (lower is better)
Translates to: SIVKASGSHATL*DYLPPETQSQL
Trigger: CAGTTGTGATTGAGTTTCTGGAGGAAGATAATCTCAAAGGGTGGCATGGGAGCCTGAGGCTTTGACTATGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp GTGTGTCTTTTTGGGAATTGGGTTACAAGAGCAAACTaGCCAGAGCGAGCAGAGGTCCTGAATTCAATTCCC +
Preference number: 3 (lower is better)
Translates to: VCLFGNWVTRAN*PERAEVLNSIP
Trigger: GGGAATTGAATTCAGGACCTCTGCTCGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp ATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTaGAGATCCTTATCTGGATCTTGGTTTGGAGATCAT +
Preference number: 3 (lower is better)
Translates to: IGRLTSDPYLEA*RSLSGSWFGDH
Trigger: ATGATCTCCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp CTGCTAGATCCTTGGAATTCTATTCACAGCTGCGAGTaGACAATTGTTGGGAATTGGGCTGACGACTGTAAG +
Preference number: 3 (lower is better)
Translates to: LLDPWNSIHSCE*TIVGNWADDCK
Trigger: CTTACAGTCGTCAGCCCAATTCCCAACAATTGTTCACTCGCAGCTGTGAATAGAATTCCAAGGATCTAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp GTGGTGGAACACATCTTTAATCTGGGCTACACCTTCTaGTGGAGACAATATAAGGACATTGGAAGAAGGGAG +
Preference number: 3 (lower is better)
Translates to: VVEHIFNLGYTF*WRQYKDIGRRE
Trigger: CTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGATGTGTTCCACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp ATTTTTGCCTACCTGTGTGTCAGTGTAGCACATGAATaGAATGTCTATGGAGTCCTGAGTAGGGCAGAAGAT +
Preference number: 3 (lower is better)
Translates to: IFAYLCVSVAHE*NVYGVLSRAED
Trigger: ATCTTCTGCCCTACTCAGGACTCCATAGACATTGCATTCATGTGCTACACTGACACACAGGTAGGCAAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp ACCAAAGGAATACGGTTTCAATGGAACTGCCCCATTTaGTGTCCTAGTGCAGAAAATAGATGTGGACACAGA +
Preference number: 3 (lower is better)
Translates to: TKGIRFQWNCPI*CPSAENRCGHR
Trigger: TCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAATGGGGCAGTTCCATTGAAACCGTATTCCTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp CATTTTAGACCATTGTCTGATAGCTTGAAGAGCAGCTaGAGAGAACAGGCAATATCTCTCATGTGTGTGCTC +
Preference number: 3 (lower is better)
Translates to: HFRPLSDSLKSS*REQAISLMCVL
Trigger: GAGCACACACATGAGAGATATTGCCTGTTCTCTTCAGCTGCTCTTCAAGCTATCAGACAATGGTCTAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp TTGGGAAATATGGGTAAGGTTACCTTCATTGAGTCCTaGAGTCTCTCAGCTCTCAGTTCTGTATTACTTCCT +
Preference number: 3 (lower is better)
Translates to: LGNMGKVTFIES*SLSALSSVLLP
Trigger: AGGAAGTAATACAGAACTGAGAGCTGAGAGACTCCAGGACTCAATGAAGGTAACCTTACCCATATTTCCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATACTCATTTTTCTTCCATaGAGATTTGCCCCTGGTAAC +
Preference number: 3 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNILIFLP*RFAPGN
Trigger: GTTACCAGGGGCAAATCTCAATGGAAGAAAAATGAG...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCTCTGTGTATGTATTTTaGCCTACCTGTGTGTCAGTG +
Preference number: 3 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSSVYVF*PTCVSV
Trigger: CACTGACACACAGGTAGGCAAAAATACATACACAGA...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp TTGGAGATCCTTATCTGGATCTTGGTTTGGAGATCATaGGCCAAAGTGGCTATGGATTCCAGAAGATTGAAT +
Preference number: 3 (lower is better)
Translates to: LEILIWILVWRS*AKVAMDSRRLN
Trigger: ATTCAATCTTCTGGAATCCATAGCCACTTTGGCTCATGATCTCCAAACCAAGATCCAGATAAGGATCTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp GCATATGTGTCAAGGACCTTAGTTTCTGAGAGGTTCTaGTTGTCCATGTTAGTTGAGACTTCTGATCATTCT +
Preference number: 3 (lower is better)
Translates to: AYVSRTLVSERF*LSMLVETSDHS
Trigger: AGAATGATCAGAAGTCTCAACTAACATGGACAACCAGAACCTCTCAGAAACTAAGGTCCTTGACACATATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp GTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTaGAATGAACTACAATCCAGAATTGGAAGGCTCACC +
Preference number: 3 (lower is better)
Translates to: VVAIPGCQLDYI*NELQSRIGRLT
Trigger: GGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAGCCACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CCA 72 bp CTACTTATCAGTGAGTACATACTATGTGTGTCTTTTTaGGAATTGGGTTACAAGAGCAAACTGACCAGAGCG +
Preference number: 3 (lower is better)
Translates to: LLISEYILCVSF*ELGYKSKLTRA
Trigger: CGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGATAAGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATACACTCAATTGTCTTTTaGGAAATTGCACTTTCTAGG +
Preference number: 3 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIHSIVF*EIALSR
Trigger: CCTAGAAAGTGCAATTTCCAAAAAGACAATTGAGTG...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGTTTTTGTTCCAGCCATaGGACACCATTCTGCATCCC +
Preference number: 3 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKFLFQP*DTILHP
Trigger: GGGATGCAGAATGGTGTCCAATGGCTGGAACAAAAA...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp GGAATCCATGGGAATCTACCAACTTCCCAGGCAATTTaGAAAATCATAGGTTGTCTTCAACAAACTGATAGC +
Preference number: 3 (lower is better)
Translates to: GIHGNLPTSQAI*KIIGCLQQTDS
Trigger: GCTATCAGTTTGTTGAAGACAACCTATGATTTTTCAAATTGCCTGGGAAGTTGGTAGATTCCCATGGATTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR-3UTR CAA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGACTATGTGTGTCTTTTaGGGAATTGGGTTACAAGAG +
Preference number: 3 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQTMCVF*GIGLQE
Trigger: CTCTTGTAACCCAATTCCCAAAAAGACACACATAGT...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp AGATATTTAACCAAAGGAATACGGTTTCAATGGAACTaGCCCATTTGGTGTCCTAGTGCAGAAAATAGATGT +
Preference number: 3 (lower is better)
Translates to: RYLTKGIRFQWN*PIWCPSAENRC
Trigger: ACATCTATTTTCTGCACTAGGACACCAAATGGGGCAGTTCCATTGAAACCGTATTCCTTTGGTTAAATATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp TCCTGTGGTTATTTTGTTTCCCCTTCTAAGTGGGATTaGAACATTCTCTCTTATTCCTTCCTAAAGGTTGAA +
Preference number: 3 (lower is better)
Translates to: SCGYFVSPSKWD*NILSYSFLKVE
Trigger: TTCAACCTTTAGGAAGGAATAAGAGAGAATGTTTCAATCCCACTTAGAAGGGGAAACAAAATAACCACAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR GCA 72 bp ATGTGGACACAGACACTGTCTCTATTCCTGAAGCAATaGTTGACTAATAACAATCTTGTAATGCAAATGTCA +
Preference number: 3 (lower is better)
Translates to: MWTQTLSLFLKQ*LTNNNLVMQMS
Trigger: TGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAGGAATAGAGACAGTGTCTGTGTCCACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp TTATCTTCCTCCAGAAACTCAATCACAACTGCAAACTaGGTGCAGTCTCTGAGAAAAATTAGTTTTATGCAA +
Preference number: 3 (lower is better)
Translates to: LSSSRNSITTAN*VQSLRKISFMQ
Trigger: TTGCATAAAACTAATTTTTCTCAGAGACTGCACTCAGTTTGCAGTTGTGATTGAGTTTCTGGAGGAAGATAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp GTATTCTGTACTTTTCGGCAAATATCTACTTATCAGTaGGTACATACTATGTGTGTCTTTTTGGGAATTGGG +
Preference number: 3 (lower is better)
Translates to: VFCTFRQISTYQ*VHTMCVFLGIG
Trigger: CCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGATAAGTAGATATTTGCCGAAAAGTACAGAATAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp TCCGGTATGTCAAAAATTAGGCATATCTTTTCTTACTaGGGCCTGACCATGCATTATTCTGATATATATCAG +
Preference number: 3 (lower is better)
Translates to: SGMSKIRHIFSY*GLTMHYSDIYQ
Trigger: CTGATATATATCAGAATAATGCATGGTCAGGCCTCAGTAAGAAAAGATATGCCTAATTTTTGACATACCGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR TCA 72 bp AATACACAATATTGTCTCGAGGAGACACTGTTTTCATaGTCAAGTATGAGATACAGGTACCTAAAAACCAAA +
Preference number: 3 (lower is better)
Translates to: NTQYCLEETLFS*SSMRYRYLKTK
Trigger: TTTGGTTTTTAGGTACCTGTATCTCATACTTGATCATGAAAACAGTGTCTCCTCGAGACAATATTGTGTATT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCACATCCAAGAATCCCTaGACTGGATGCCAGGATGGA +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLTSKNP*TGCQDG
Trigger: TCCATCCTGGCATCCAGTGCAGGGATTCTTGGATGT...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACGAACTGCTCCAAGGATaGAAGAACAAGTTTGATCCA +
Preference number: 4 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHELLQG*KNKFDP
Trigger: TGGATCAAACTTGTTCTTTCATCCTTGGAGCAGTTC...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACGCACACAGAACACATTaGAATAGGCAACATATGGGA +
Preference number: 4 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHAHRTH*NRQHMG
Trigger: TCCCATATGTTGCCTATTTCAATGTGTTCTGTGTGC...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTCTCAACCTTCTTCCTaGGCCTGTGAATTTGAAAGC +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFSQPSS*ACEFES
Trigger: GCTTTCAAATTCACAGGCCCAGGAAGAAGGTTGAGA...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
3UTR CAA 72 bp CCCTCCTACAACTCCTCATCCCATTCTTCCTCCCACTaGCCTCTCATAGAGTGCTTACTAACTTCCCTCTCT +
Preference number: 4 (lower is better)
Translates to: PSYNSSSHSSSH*PLIECLLTSLS
Trigger: AGAGAGGGAAGTTAGTAAGCACTCTATGAGAGGCAAGTGGGAGGAAGAATGGGATGAGGAGTTGTAGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCGAACTGCTCCAAGGATaGAAGAACAAGTTTGATCCA +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLELLQG*KNKFDP
Trigger: TGGATCAAACTTGTTCTTTCATCCTTGGAGCAGTTC...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAGGCAGAGGCTGCAAGTaGAACAGCAGGCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIGRGCK*NSRLPL
Trigger: GAGTGGAAGCCTGCTGTTTCACTTGCAGCCTCTGCC...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCGGAATTTGGCTTCATTaGATGTGTCAGGTAGATTCC +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLGIWLH*MCQVDS
Trigger: GGAATCTACCTGACACATTCAATGAAGCCAAATTCC...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCCATAGGCATCTGAACTaGTCCAAGGATGAAAGAACA +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLHRHLN*SKDERT
Trigger: TGTTCTTTCATCCTTGGAGCAGTTCAGATGCCTATG...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACGAAATCTCACCATGGTaGGGTAGAAAAGTAAAAGTC +
Preference number: 4 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHEISPW*GRKVKV
Trigger: GACTTTTACTTTTCTACCCCACCATGGTGAGATTTC...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp TGGGCTACACCTTCTGCTGGAGACAATATAAGGACATaGGAAGAAGGGAGTCTAGCTCTTGCTCCTTCACCT +
Preference number: 4 (lower is better)
Translates to: WATPSAGDNIRT*EEGSLALAPSP
Trigger: AGGTGAAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCCAGTTGAGGCATATGTaGAAATGTGAGAGATTCCTA +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFQLRHM*KCERFL
Trigger: TAGGAATCTCTCACATTTTCACATATGCCTCAACTG...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCCAGTTGAGGCATATGTaGAAATGTGAGAGATTCCTA +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLQLRHM*KCERFL
Trigger: TAGGAATCTCTCACATTTTCACATATGCCTCAACTG...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTACATCCAAGAATCCCTaGACTGGATGCCAGGATGGA +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALATSKNP*TGCQDG
Trigger: TCCATCCTGGCATCCAGTGCAGGGATTCTTGGATGT...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCGAAATCTCACCATGGTaGGGTAGAAAAGTAAAAGTC +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLEISPW*GRKVKV
Trigger: GACTTTTACTTTTCTACCCCACCATGGTGAGATTTC...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp ACTAATACACCCCCTGACTCTTCTGCATTTCTTACCTCTTCCCCCATCTCCAAGGGAGTGCATGGGCCATaGCATAGACAGCATTGTATA +
Preference number: 4 (lower is better)
Translates to: TNTPPDSSAFLTSSPISKGVHGP*HRQHCI
Trigger: TATACAATGCTGTCTATGCCATGGCCCATGCACTCC...CTTGGAGATGGGGGAAGAGGTAAGAAATGCAGAAGAGTCAGGGGGTGTATTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCCCAAATCTTTACCATTaGCTTCATTCAGGTTTAGTC +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFPNLYH*LHSGLV
Trigger: GACTAAACCTGAATGAAGTCAATGGTAAAGATTTGG...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTCCTGTAAGCAGAAATaGACACTTAGTCTCTTCATT +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFSCKQK*TLSLFI
Trigger: AATGAAGAGACTAAGTGTTCATTTCTGCTTACAGGA...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCTCCTGTAAGCAGAAATaGACACTTAGTCTCTTCATT +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLSCKQK*TLSLFI
Trigger: AATGAAGAGACTAAGTGTTCATTTCTGCTTACAGGA...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TGTATTACTTCCTTAAGGGTCCACCCACTTCCCACCCTTGGAGGCTGCACACTCAGTGGAAATAAAGTATaGAGTAGACCATTGCCAATG +
Preference number: 4 (lower is better)
Translates to: CITSLRVHPLPTLGGCTLSGNKV*SRPLPM
Trigger: CATTGGCAATGGTCTACTTCATACTTTATTTCCACT...GAGTGTGCAGCCTCCAAGGGTGGGAAGTGGGTGGACCCTTAAGGAAGTAATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACTATGTAGATCTTGGGTaGAAAGATACATCCAAGAAT +
Preference number: 4 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHYVDLG*KDTSKN
Trigger: ATTCTTGGATGTATCTTTGCACCCAAGATCTACATA...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp CCAGAGCGAGCAGAGGTCCTGAATTCAATTCCCAGCAGCCACGTAATGGCTCACTCTGTGCTTTTGAGATaGAACAATGTTTGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: PERAEVLNSIPSSHVMAHSVLLR*NNVCRK
Trigger: TTTCCTACAAACATTGTTCCATCTCAAAAGCACAGA...GTGAGCCATTACGTGGCTGCTGGGAATTGAATTCAGGACCTCTGCTCGCTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCAAAGTGTTCACCATGTaGAAAATATGGGCTGAACTT +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFKVFTM*KIWAEL
Trigger: AAGTTCAGCCCATATTTTCCACATGGTGAACACTTT...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp ACTAATACACCCCCTGACTCTTCTGCATTTCTTACCTCTTCCCCCATCTCCAAGCACTGGATGCCAGGATaGAGAAAATCTCTACAGCAA +
Preference number: 4 (lower is better)
Translates to: TNTPPDSSAFLTSSPISKHWMPG*RKSLQQ
Trigger: TTGCTGTAGAGATTTTCTCCATCCTGGCATCCAGTG...CTTGGAGATGGGGGAAGAGGTAAGAAATGCAGAAGAGTCAGGGGGTGTATTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCTCTCAACCTTCTTCCTaGGCTTGTATCATTAGAAAT +
Preference number: 4 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFSQPSS*ACIIRN
Trigger: ATTTCTAATGATACAAGCCCAGGAAGAAGGTTGAGA...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTAAAGTACCAGAGCTGTaGATGCAGAGAAGCAAAAGG +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAKVPEL*MQRSKR
Trigger: CCTTTTGCTTCTCTGCATTCACAGCTCTGGTACTTT...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR TCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAATCTCTACAGCAACCATaGCCTTGCCCTTTGTGCTAT +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQSLQQP*PCPLCY
Trigger: ATAGCACAAAGGGCAAGGTCATGGTTGCTGTAGAGA...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTATAGGAGTGTCATGGTaGTTCACAAACGCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAIGVSW*FTNAQS
Trigger: ACTTTGGGCGTTTGTGAAGCACCATGACACTCCTAT...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR CCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCTGTGCTATGGTAGACTaGGAGGAAGGTAACCCAGAC +
Preference number: 4 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSCAMVD*EEGNPD
Trigger: GTCTGGGTTACCTTCCTCCCAGTCTACCATAGCACA...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp CCCCACATTTGGGAAATATGGGTAAGGTTACCTTCATaGAGTCCTGGAGTCTCTCAGCTCTCAGTTCTGTAT +
Preference number: 4 (lower is better)
Translates to: PHIWEIWVRLPS*SPGVSQLSVLY
Trigger: ATACAGAACTGAGAGCTGAGAGACTCCAGGACTCAATGAAGGTAACCTTACCCATATTTCCCAAATGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGGGCAGAGGCTGCAAGTaGAACAGCAGGCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKGRGCK*NSRLPL
Trigger: GAGTGGAAGCCTGCTGTTTCACTTGCAGCCTCTGCC...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAAGTGACTCTGTTAGGGTaGCCAATGAAGAAAAAGGTG +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQVTLLG*PMKKKV
Trigger: CACCTTTTTCTTCATTGGTCACCCTAACAGAGTCAC...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR CCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAACACTGGATGCCAGGATaGAGAAAATCTCTACAGCAA +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQHWMPG*RKSLQQ
Trigger: TTGCTGTAGAGATTTTCTCCATCCTGGCATCCAGTG...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp CTGATCATTCTATGGGGCACCATTCTCTTCAGCTTCTaGCAACTATTCCCTAATTTAACCACAGGGGTTCTC +
Preference number: 4 (lower is better)
Translates to: LIILWGTILFSF*QLFPNLTTGVL
Trigger: GAGAACCCCTGTGGTTAAATTAGGGAATAGTTGCAAGAAGCTGAAGAGAATGGTGCCCCATAGAATGATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAACATAGGCATCTGAACTaGTCCAAGGATGAAAGAACA +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQHRHLN*SKDERT
Trigger: TGTTCTTTCATCCTTGGAGCAGTTCAGATGCCTATG...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCATCGAAAACGCCAATaGCAAAGCATATTTGTGGTT +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAHRKRQ*QSIFVV
Trigger: AACCACAAATATGCTTTGGCATTGGCGTTTTCGATG...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTTCACAGCTTTCTGCATaGATTTGTTCTGTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALASQLSA*ICSVLC
Trigger: ACACAGAACAGAACAAATGCATGCAGAAAGCTGTGA...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR GCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCTACCAGAGCTGTGAATaGAGAGAAGCAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSYQSCE*REAKGH
Trigger: ATGGCCTTTTGCTTCTCTGCATTCACAGCTCTGGTA...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR CCA 90 bp ACTAATACACCCCCTGACTCTTCTGCATTTCTTACCTCTTCCCCCATCTCCAAGAAAGTGTTCACCATGTaGAAAATATGGGCTGAACTT +
Preference number: 4 (lower is better)
Translates to: TNTPPDSSAFLTSSPISKKVFTM*KIWAEL
Trigger: AAGTTCAGCCCATATTTTCCACATGGTGAACACTTT...CTTGGAGATGGGGGAAGAGGTAAGAAATGCAGAAGAGTCAGGGGGTGTATTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp ATCAGTGAGTACATACTATGTGTGTCTTTTTGGGAATaGGGTTACAAGAGCAAACTGACCAGAGCGAGCAGA +
Preference number: 4 (lower is better)
Translates to: ISEYILCVSFWE*GYKSKLTRASR
Trigger: TCTGCTCGCTCTGGTCAGTTTGCTCTTGTAACCCAATTCCCAAAAAGACACACATAGTATGTACTCACTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp TCTGCCTCCTTCCTCTTTCTGTGTCCTGTGGTTATTTaGTTTCCCCTTCTAAGTGGGATTGAAACATTCTCT +
Preference number: 4 (lower is better)
Translates to: SASFLFLCPVVI*FPLLSGIETFS
Trigger: AGAGAATGTTTCAATCCCACTTAGAAGGGGAAACAAAATAACCACAGGACACAGAAAGAGGAAGGAGGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAGCACACAGAACACATTaGAATAGGCAACATATGGGA +
Preference number: 4 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNIAHRTH*NRQHMG
Trigger: TCCCATATGTTGCCTATTTCAATGTGTTCTGTGTGC...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTATTCCAAATGTGATTTaGTGTAAGACACAGGTGACT +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAIPNVI*CKTQVT
Trigger: AGTCACCTGTGTCTTACAGCAAATCACATTTGGAAT...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR GCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGAATCCCTGCACTGGATaGCAGGATGGAGAAAATCTC +
Preference number: 4 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQNPCTG*QDGENL
Trigger: GAGATTTTCTCCATCCTGGCATCCAGTGCAGGGATT...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTTCAAGCAGTGAGAACTaGCTACTTTTCCATTATCTA +
Preference number: 4 (lower is better)
Translates to: PSAGDNIRTLEEGSLALASSSEN*LLFHYL
Trigger: TAGATAATGGAAAAGTAGCCAGTTCTCACTGCTTGA...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAACCAAATCTTTACCATTaGCTTCATTCAGGTTTAGTC +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQPNLYH*LHSGLV
Trigger: GACTAAACCTGAATGAAGTCAATGGTAAAGATTTGG...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAAAATCCCAAGGTGTTTTaGGAGATTCCAAAAGTGAAA +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQNPKVF*EIPKVK
Trigger: TTTCACTTTTGGAATCTCTCAAAACACCTTGGGATT...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGTGTGCTATGGTAGACTaGGAGGAAGGTAACCCAGAC +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKCAMVD*EEGNPD
Trigger: GTCTGGGTTACCTTCCTCCCAGTCTACCATAGCACA...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp TTTCTTTTCTCCCCGGGCTGCTCCACTTACATGGTGACCAGGAAATATAATATAAGTGGAAATAAAGTATaGAGTAGACCATTGCCAATG +
Preference number: 4 (lower is better)
Translates to: FLFSPGCSTYMVTRKYNISGNKV*SRPLPM
Trigger: CATTGGCAATGGTCTACTTCATACTTTATTTCCACT...TATATTATATTTCCTGGTCACCATGTAAGTGGAGCAGCCCGGGGAGAAAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGTCTCTACAGCAACCATaGCCTTGCCCTTTGTGCTAT +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKSLQQP*PCPLCY
Trigger: ATAGCACAAAGGGCAAGGTCATGGTTGCTGTAGAGA...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp TTCCCAATTTCTGGAATCTCAGGATTCTGGGGTGTTAGGTGTGCCTTCTATCAATCTGTGCTTTTGAGATaGAACAATGTTTGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: FPISGISGFWGVRCAFYQSVLLR*NNVCRK
Trigger: TTTCCTACAAACATTGTTCCATCTCAAAAGCACAGA...TTGATAGAAGGCACACCTAACACCCCAGAATCCTGAGATTCCAGAAATTGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp TATGTGTCAAGGACCTTAGTTTCTGAGAGGTTCTGGTaGTCCATGTTAGTTGAGACTTCTGATCATTCTATG +
Preference number: 4 (lower is better)
Translates to: YVSRTLVSERFW*SMLVETSDHSM
Trigger: CATAGAATGATCAGAAGTCTCAACTAACATGGACAACCAGAACCTCTCAGAAACTAAGGTCCTTGACACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp ATTTGGTGTCCTAGTGCAGAAAATAGATGTGGACACAGACACTGTCTCTATTCCAATATCACAGCTTTCTaGATGCATTTGTTCTGTTCT +
Preference number: 4 (lower is better)
Translates to: IWCPSAENRCGHRHCLYSNITAF*MHLFCS
Trigger: AGAACAGAACAAATGCATGCAGAAAGCTGTGATATT...GGAATAGAGACAGTGTCTGTGTCCACATCTATTTTCTGCACTAGGACACCAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
3UTR CAA 72 bp TGGACACAGACACTGTCTCTATTCCTGAAGCAATGCTaGACTAATAACAATCTTGTAATGCAAATGTCACCA +
Preference number: 4 (lower is better)
Translates to: WTQTLSLFLKQC*TNNNLVMQMSP
Trigger: TGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAGGAATAGAGACAGTGTCTGTGTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGAATCCCAAGGTGTTTTaGGAGATTCCAAAAGTGAAA +
Preference number: 4 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQNPKVF*EIPKVK
Trigger: TTTCACTTTTGGAATCTCTCAAAACACCTTGGGATT...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGGGAATTTGGCTTCATTaGATGTGTCAGGTAGATTCC +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKGIWLH*MCQVDS
Trigger: GGAATCTACCTGACACATTCAATGAAGCCAAATTCC...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR TCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGGATCAGGATTTCTGTTaGTTTCATCCATCGAAAACG +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKDQDFC*FHPSKT
Trigger: CGTTTTCGATGGATGAAATCAACAGAAATCCTGATC...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGCATCGAAAACGCCAATaGCAAAGCATATTTGTGGTT +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKHRKRQ*QSIFVV
Trigger: AACCACAAATATGCTTTGGCATTGGCGTTTTCGATG...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR GCA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGTATGTAGATCTTGGGTaGAAAGATACATCCAAGAAT +
Preference number: 4 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQYVDLG*KDTSKN
Trigger: ATTCTTGGATGTATCTTTGCACCCAAGATCTACATA...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CCA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGTCAAGCAGTGAGAACTaGCTACTTTTCCATTATCTA +
Preference number: 4 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKSSSEN*LLFHYL
Trigger: TAGATAATGGAAAAGTAGCCAGTTCTCACTGCTTGA...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp AGGATTTATTCTAGTTGCAAACACTCAATTGTCTTTTaGGAAATTGCACTTTCTAGGAAGCAGCATAGTCAA +
Preference number: 4 (lower is better)
Translates to: RIYSSCKHSIVF*EIALSRKQHSQ
Trigger: TTGACTATGCTGCTTCCTAGAAAGTGCAATTTCCAAAAAGACAATTGAGTGTTTGCAACTAGAATAAATCCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
3UTR CAA 72 bp ATTATTCTGATATATATCAGAAATTTTGACTCTGGGTaGATAAGCCTATCCCTCTACTTGAGGCTATCTCTA +
Preference number: 4 (lower is better)
Translates to: IILIYIRNFDSG*ISLSLYLRLSL
Trigger: TAGAGATAGCCTCAAGTAGAGGGATAGGCTTATCAACCCAGAGTCAAAATTTCTGATATATATCAGAATAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CAA 90 bp ACTAATACACCCCCTGACTCTTCTGCATTTCTTACCTCTTCCCCCATCTCCAAGCCTGGGCCTGTGAATTaGAAAGCCAGAATGACAGTG +
Preference number: 5 (lower is better)
Translates to: TNTPPDSSAFLTSSPISKPGPVN*KARMTV
Trigger: CACTGTCATTCTGGCTTTCAAATTCACAGGCCCAGG...CTTGGAGATGGGGGAAGAGGTAAGAAATGCAGAAGAGTCAGGGGGTGTATTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS GCA 90 bp TTCCACTCTCTCCTTCCAAGATCTTCTGAATCCAGGACCACAATCTaGACTGCACACAGAGGATGGCATCTTTCTACTTCCTGTAGCCAA +
Preference number: 5 (lower is better)
Translates to: FHSLLPRSSESRTTI*TAHRGWHLSTSCSQ
Trigger: TTGGCTACAGGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCAGATTGTGGTCCTGGATTCAGAAGATCTTGGAAGGAGAGAGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CAA 90 bp TCCAGCCATTGGACACCATTCTGCATCCCCCTCCTACAACTCCTCATCCCATTCAGGAATTTGGCTTCATaGAATGTGTCAGGTAGATTC +
Preference number: 5 (lower is better)
Translates to: SSHWTPFCIPLLQLLIPFRNLAS*NVSGRF
Trigger: GAATCTACCTGACACATTCAATGAAGCCAAATTCCT...GAATGGGATGAGGAGTTGTAGGAGGGGGATGCAGAATGGTGTCCAATGGCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 90 bp GTAGTTGGGAGTCCCAGATACCAAGATGTTTCTCAACCTTCTTCCTaGGCCTGTGAATTTGAAAGCCAGAATGACAGTGACTGTTTTGGC +
Preference number: 5 (lower is better)
Translates to: VVGSPRYQDVSQPSS*ACEFESQNDSDCFG
Trigger: GCCAAAACAGTCACTGTCATTCTGGCTTTCAAATTCACAGGCCCAGGAAGAAGGTTGAGAAACATCTTGGTATCTGGGACTCCCAACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS TCA 90 bp TGCCAGGCAGGCCAAGTATCCCAGTACACAGTAGAATGCAGTAACTaGGCCCTTGTTACATACAAGAATAATGTTCCCATGCTCAGAATG +
Preference number: 5 (lower is better)
Translates to: CQAGQVSQYTVECSN*ALVTYKNNVPMLRM
Trigger: CATTCTGAGCATGGGAACATTATTCTTGTATGTAACAAGGGCTCAGTTACTGCATTCTACTGTGTACTGGGATACTTGGCCTGCCTGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CAA 90 bp CCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTGCTTTCTGCATGCATTaGTTCTGTTCTGTGTTGGCA +
Preference number: 5 (lower is better)
Translates to: PSAGDNIRTLEEGSLALAAFCMH*FCSVLA
Trigger: TGCCAACACAGAACAGAACAAATGCATGCAGAAAGC...AGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS CCA 90 bp GTAGTTGGGAGTCCCAGATACCAAGATGTTTCTCAACCTTCTTCCTaGGCTTGTATCATTAGAAATTTCATTTTCAGGGCAGAGGCTGCA +
Preference number: 5 (lower is better)
Translates to: VVGSPRYQDVSQPSS*ACIIRNFIFRAEAA
Trigger: TGCAGCCTCTGCCCTGAAAATGAAATTTCTAATGATACAAGCCCAGGAAGAAGGTTGAGAAACATCTTGGTATCTGGGACTCCCAACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232927.2
CDS GCA 90 bp GCCATCCCCAAGGGGTCTTCATATCTTAGAAATATCACAGCTTTCTaGATGCATTTGTTCTGTTCTGTGTTGGCATACTGGTATTCTGGA +
Preference number: 5 (lower is better)
Translates to: AIPKGSSYLRNITAF*MHLFCSVLAYWYSG
Trigger: TCCAGAATACCAGTATGCCAACACAGAACAGAACAAATGCATGCAGAAAGCTGTGATATTTCTAAGATATGAAGACCCCTTGGGGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS GCA 90 bp GATAGAATTTCTCTCAGGTCTCAAGAAAATTATGTAGATCTTGGGTaGAAAGATACATCCAAGAATCCCTGCACTGGATGCCAGGATGGA +
Preference number: 5 (lower is better)
Translates to: DRISLRSQENYVDLG*KDTSKNPCTGCQDG
Trigger: TCCATCCTGGCATCCAGTGCAGGGATTCTTGGATGTATCTTTGCACCCAAGATCTACATAATTTTCTTGAGACCTGAGAGAAATTCTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 90 bp ATCTATTGCCTGATTATCAACCTGTTGAAGATTTGTCTCATGGAGTaGATGGGCCATGGCATAGACAGCATTGTATATGTTTTGGCTATC +
Preference number: 5 (lower is better)
Translates to: IYCLIINLLKICLME*MGHGIDSIVYVLAI
Trigger: GATAGCCAAAACATATACAATGCTGTCTATGCCATGGCCCATGCACTCCATGAGACAAATCTTCAACAGGTTGATAATCAGGCAATAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 90 bp TCCCCAAGGGGTCTTCATATCTTAGAAATATCACAGCTTTCTGCATaGATTTGTTCTGTTCTGTGTTGGCATACTGGTATTCTGGACAAT +
Preference number: 5 (lower is better)
Translates to: SPRGLHILEISQLSA*ICSVLCWHTGILDN
Trigger: ATTGTCCAGAATACCAGTATGCCAACACAGAACAGAACAAATGCATGCAGAAAGCTGTGATATTTCTAAGATATGAAGACCCCTTGGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS GCA 90 bp GTTTACCTTCAAGCAGTGAGAACTGGCTACTTTTCCATTATCTATTaGCTGATTATCAACCTGTTGAAGATTTGTCTCATGGAGTGCATG +
Preference number: 5 (lower is better)
Translates to: VYLQAVRTGYFSIIY*LIINLLKICLMECM
Trigger: CATGCACTCCATGAGACAAATCTTCAACAGGTTGATAATCAGGCAATAGATAATGGAAAAGTAGCCAGTTCTCACTGCTTGAAGGTAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS-3UTR CAA 90 bp AAAGAAGACTCATCAGAGAAGAAAACCACTCTTAATGTTAGACTTCATGGCCAGAATGCATCTGTGCTTTaGAGATGGAACAATGTTTGT +
Preference number: 5 (lower is better)
Translates to: KEDSSEKKTTLNVRLHGQNASVL*RWNNVC
Trigger: ACAAACATTGTTCCATCTCAAAAGCACAGATGCATT...CTGGCCATGAAGTCTAACATTAAGAGTGGTTTTCTTCTCTGATGAGTCTTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 90 bp ATCTTTCTACTTCCTGTAGCCAACTCAAACATGTCTAAATGTAATTaGAAGTGTTCACCATGTGGAAAATATGGGCTGAACTTTCCTAAC +
Preference number: 5 (lower is better)
Translates to: IFLLPVANSNMSKCN*KCSPCGKYGLNFPN
Trigger: GTTAGGAAAGTTCAGCCCATATTTTCCACATGGTGAACACTTTCAATTACATTTAGACATGTTTGAGTTGGCTACAGGAAGTAGAAAGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 90 bp TTTCTGCATGCATTTGTTCTGTTCTGTGTTGGCATACTGGTATTCTaGACAATTCACACAGTGATCCATATTTGTATCATTAGAAATTTC +
Preference number: 5 (lower is better)
Translates to: FLHAFVLFCVGILVF*TIHTVIHICIIRNF
Trigger: GAAATTTCTAATGATACAAATATGGATCACTGTGTGAATTGTCCAGAATACCAGTATGCCAACACAGAACAGAACAAATGCATGCAGAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS-3UTR CAA 90 bp CTGAAGCAATGCTTGACTAATAACAATCTTGTAATGCAAATGTCACCAAAGAAGAATGCATCTGTGCTTTaGAGATGGAACAATGTTTGT +
Preference number: 5 (lower is better)
Translates to: LKQCLTNNNLVMQMSPKKNASVL*RWNNVC
Trigger: ACAAACATTGTTCCATCTCAAAAGCACAGATGCATT...CTTCTTTGGTGACATTTGCATTACAAGATTGTTATTAGTCAAGCATTGCTTCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 72 bp AACAGCAGGCTTCCACTCTCTCCTTCCAAGATCTTCTaGATCCAGGACCACAATCTGCACTGCACACAGAGG +
Preference number: 6 (lower is better)
Translates to: NSRLPLSPSKIF*IQDHNLHCTQR
Trigger: CCTCTGTGTGCAGTGCAGATTGTGGTCCTGGATTCAGAAGATCTTGGAAGGAGAGAGTGGAAGCCTGCTGTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 72 bp ATGTGTCAGGTAGATTCCTTGCCAAGAAAGCCACAGTaGAGCTTCCAAGTGCCAGGCAGGCCAAGTATCCCA +
Preference number: 6 (lower is better)
Translates to: MCQVDSLPRKPQ*SFQVPGRPSIP
Trigger: TGGGATACTTGGCCTGCCTGGCACTTGGAAGCTTCACTGTGGCTTTCTTGGCAAGGAATCTACCTGACACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 72 bp CTCCTTCCAAGATCTTCTGAATCCAGGACCACAATCTaGACTGCACACAGAGGATGGCATCTTTCTACTTCC +
Preference number: 6 (lower is better)
Translates to: LLPRSSESRTTI*TAHRGWHLSTS
Trigger: GGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCAGATTGTGGTCCTGGATTCAGAAGATCTTGGAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 72 bp GTAGATCTTGGGTGCAAAGATACATCCAAGAATCCCTaGACTGGATGCCAGGATGGAGAAAATCTCTACAGC +
Preference number: 6 (lower is better)
Translates to: VDLGCKDTSKNP*TGCQDGENLYS
Trigger: GCTGTAGAGATTTTCTCCATCCTGGCATCCAGTGCAGGGATTCTTGGATGTATCTTTGCACCCAAGATCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp GAATCCAGGACCACAATCTGCACTGCACACAGAGGATaGCATCTTTCTACTTCCTGTAGCCAACTCAAACAT +
Preference number: 6 (lower is better)
Translates to: ESRTTICTAHRG*HLSTSCSQLKH
Trigger: ATGTTTGAGTTGGCTACAGGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCAGATTGTGGTCCTGGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp AGTCCCAGATACCAAGATGTTTCTCAACCTTCTTCCTaGGCCTGTGAATTTGAAAGCCAGAATGACAGTGAC +
Preference number: 6 (lower is better)
Translates to: SPRYQDVSQPSS*ACEFESQNDSD
Trigger: GTCACTGTCATTCTGGCTTTCAAATTCACAGGCCCAGGAAGAAGGTTGAGAAACATCTTGGTATCTGGGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS CAA 90 bp CCAGATACCAAGATGTTTCTCAACCTTCTTCCTGGGCCTGTGAATTaGAAAGCCAGAATGACAGTGACTGTTTTGGCCAAAACTGTGGAA +
Preference number: 6 (lower is better)
Translates to: PDTKMFLNLLPGPVN*KARMTVTVLAKTVE
Trigger: TTCCACAGTTTTGGCCAAAACAGTCACTGTCATTCTGGCTTTCAAATTCACAGGCCCAGGAAGAAGGTTGAGAAACATCTTGGTATCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS GCA 72 bp ATTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTaGTTCACAAACGCCCAAAGTACCAGAGCTGTGAAT +
Preference number: 6 (lower is better)
Translates to: ILLLAFTIGVSW*FTNAQSTRAVN
Trigger: ATTCACAGCTCTGGTACTTTGGGCGTTTGTGAAGCACCATGACACTCCTATTGTGAAGGCCAATAACAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS CAA 90 bp AGAACTGGCTACTTTTCCATTATCTATTGCCTGATTATCAACCTGTaGAAGATTTGTCTCATGGAGTGCATGGGCCATGGCATAGACAGC +
Preference number: 6 (lower is better)
Translates to: RTGYFSIIYCLIINL*KICLMECMGHGIDS
Trigger: GCTGTCTATGCCATGGCCCATGCACTCCATGAGACAAATCTTCAACAGGTTGATAATCAGGCAATAGATAATGGAAAAGTAGCCAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 72 bp GTGATTTGCTGTAAGACACAGGTGACTCTGTTAGGGTaGCCAATGAAGAAAAAGGTGCACAGAAAACAGAAC +
Preference number: 6 (lower is better)
Translates to: VICCKTQVTLLG*PMKKKVHRKQN
Trigger: GTTCTGTTTTCTGTGCACCTTTTTCTTCATTGGTCACCCTAACAGAGTCACCTGTGTCTTACAGCAAATCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS TCA 72 bp GGCCAAGTATCCCAGTACACAGTAGAATGCAGTAACTaGGCCCTTGTTACATACAAGAATAATGTTCCCATG +
Preference number: 6 (lower is better)
Translates to: GQVSQYTVECSN*ALVTYKNNVPM
Trigger: CATGGGAACATTATTCTTGTATGTAACAAGGGCTCAGTTACTGCATTCTACTGTGTACTGGGATACTTGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 72 bp TCTCTCAGGTCTCAAGAAAATTATGTAGATCTTGGGTaGAAAGATACATCCAAGAATCCCTGCACTGGATGC +
Preference number: 6 (lower is better)
Translates to: SLRSQENYVDLG*KDTSKNPCTGC
Trigger: GCATCCAGTGCAGGGATTCTTGGATGTATCTTTGCACCCAAGATCTACATAATTTTCTTGAGACCTGAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp CCTGTTGAAGATTTGTCTCATGGAGTGCATGGGCCATaGCATAGACAGCATTGTATATGTTTTGGCTATCAT +
Preference number: 6 (lower is better)
Translates to: PVEDLSHGVHGP*HRQHCICFGYH
Trigger: ATGATAGCCAAAACATATACAATGCTGTCTATGCCATGGCCCATGCACTCCATGAGACAAATCTTCAACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CAA 72 bp CATTATCTATTGCCTGATTATCAACCTGTTGAAGATTaGTCTCATGGAGTGCATGGGCCATGGCATAGACAG +
Preference number: 6 (lower is better)
Translates to: HYLLPDYQPVED*SHGVHGPWHRQ
Trigger: CTGTCTATGCCATGGCCCATGCACTCCATGAGACAAATCTTCAACAGGTTGATAATCAGGCAATAGATAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 72 bp CACACAGAACACATTGAAATAGGCAACATATGGGAATaGTGTAGTTGGGAGTCCCAGATACCAAGATGTTTC +
Preference number: 6 (lower is better)
Translates to: HTEHIEIGNIWE*CSWESQIPRCF
Trigger: GAAACATCTTGGTATCTGGGACTCCCAACTACATCATTCCCATATGTTGCCTATTTCAATGTGTTCTGTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 72 bp CTGATTATCAACCTGTTGAAGATTTGTCTCATGGAGTaGATGGGCCATGGCATAGACAGCATTGTATATGTT +
Preference number: 6 (lower is better)
Translates to: LIINLLKICLME*MGHGIDSIVYV
Trigger: AACATATACAATGCTGTCTATGCCATGGCCCATGCACTCCATGAGACAAATCTTCAACAGGTTGATAATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CAA 72 bp TGTGTCCTTTGGGGCCATCTGATAGACATAGGGATATaGTTCAATATCATTGATGATGGAACTGTAAGGTCC +
Preference number: 6 (lower is better)
Translates to: CVLWGHLIDIGI*FNIIDDGTVRS
Trigger: GGACCTTACAGTTCCATCATCAATGATATTGAACAATATCCCTATGTCTATCAGATGGCCCCAAAGGACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CAA 72 bp CAATATCAACAAATGGAGGAGAGACTGCTAGCCAGATaGCACACAGAACACATTGAAATAGGCAACATATGG +
Preference number: 6 (lower is better)
Translates to: QYQQMEERLLAR*HTEHIEIGNIW
Trigger: CCATATGTTGCCTATTTCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTCTCTCCTCCATTTGTTGATATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp AGTCCCAGATACCAAGATGTTTCTCAACCTTCTTCCTaGGCTTGTATCATTAGAAATTTCATTTTCAGGGCA +
Preference number: 6 (lower is better)
Translates to: SPRYQDVSQPSS*ACIIRNFIFRA
Trigger: TGCCCTGAAAATGAAATTTCTAATGATACAAGCCCAGGAAGAAGGTTGAGAAACATCTTGGTATCTGGGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232927.2
CDS CAA 90 bp AAGGGGTCTTCATATCTTAGAAATATCACAGCTTTCTGCATGCATTaGTTCTGTTCTGTGTTGGCATACTGGTATTCTGGACAATTCACA +
Preference number: 6 (lower is better)
Translates to: KGSSYLRNITAFCMH*FCSVLAYWYSGQFT
Trigger: TGTGAATTGTCCAGAATACCAGTATGCCAACACAGAACAGAACAAATGCATGCAGAAAGCTGTGATATTTCTAAGATATGAAGACCCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS GCA 72 bp CAAGCAGTGAGAACTGGCTACTTTTCCATTATCTATTaGCTGATTATCAACCTGTTGAAGATTTGTCTCATG +
Preference number: 6 (lower is better)
Translates to: QAVRTGYFSIIY*LIINLLKICLM
Trigger: CATGAGACAAATCTTCAACAGGTTGATAATCAGGCAATAGATAATGGAAAAGTAGCCAGTTCTCACTGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp TTCATAATTACTTTGTCCCCAAGAGGATTAGTAAAGTaGGTCTTTCTCAGAAAGGAGTTTACCTTCAAGCAG +
Preference number: 6 (lower is better)
Translates to: FIITLSPRGLVK*VFLRKEFTFKQ
Trigger: CTGCTTGAAGGTAAACTCCTTTCTGAGAAAGACCCACTTTACTAATCCTCTTGGGGACAAAGTAATTATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CAA 72 bp AGGCATCTGAACTGCTCCAAGGATGAAAGAACAAGTTaGATCCAAATCTTTACCATTGACTTCATTCAGGTT +
Preference number: 6 (lower is better)
Translates to: RHLNCSKDERTS*IQIFTIDFIQV
Trigger: AACCTGAATGAAGTCAATGGTAAAGATTTGGATCAAACTTGTTCTTTCATCCTTGGAGCAGTTCAGATGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS GCA 72 bp ACTGAGCCCTTGTTACATACAAGAATAATGTTCCCATaGTCAGAATGTTCATCAATATCAACAAATGGAGGA +
Preference number: 6 (lower is better)
Translates to: TEPLLHTRIMFP*SECSSISTNGG
Trigger: TCCTCCATTTGTTGATATTGATGAACATTCTGAGCATGGGAACATTATTCTTGTATGTAACAAGGGCTCAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp TTCTCAGAAAGGAGTTTACCTTCAAGCAGTGAGAACTaGCTACTTTTCCATTATCTATTGCCTGATTATCAA +
Preference number: 6 (lower is better)
Translates to: FSERSLPSSSEN*LLFHYLLPDYQ
Trigger: TTGATAATCAGGCAATAGATAATGGAAAAGTAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTGAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CCA 72 bp GCATTTGTTCTGTTCTGTGTTGGCATACTGGTATTCTaGACAATTCACACAGTGATCCATATTTGTATCATT +
Preference number: 6 (lower is better)
Translates to: AFVLFCVGILVF*TIHTVIHICII
Trigger: AATGATACAAATATGGATCACTGTGTGAATTGTCCAGAATACCAGTATGCCAACACAGAACAGAACAAATGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164918.3
CDS TCA 72 bp TCAAAGACATATTTGGTAAAAGATCAGGATTTCTGTTaGTTTCATCCATCGAAAACGCCAATGCCAAAGCAT +
Preference number: 6 (lower is better)
Translates to: SKTYLVKDQDFC*FHPSKTPMPKH
Trigger: ATGCTTTGGCATTGGCGTTTTCGATGGATGAAATCAACAGAAATCCTGATCTTTTACCAAATATGTCTTTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS TCA 72 bp TCCACTCTGGCATTACTAGAAATGCATCTGTGCTTTTaGGATGGAACAATGTTTGTAGGAAATTTTTATAGC +
Preference number: 6 (lower is better)
Translates to: STLALLEMHLCF*DGTMFVGNFYS
Trigger: GCTATAAAAATTTCCTACAAACATTGTTCCATCTCAAAAGCACAGATGCATTTCTAGTAATGCCAGAGTGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2
CDS CAA 72 bp ATCAAAGACATATTTGGTAAAAGATCAGGATTTCTGTaGATTTCATCCATCGAAAACGCCAATGCCAAAGCA +
Preference number: 6 (lower is better)
Translates to: IKDIFGKRSGFL*ISSIENANAKA
Trigger: TGCTTTGGCATTGGCGTTTTCGATGGATGAAATCAACAGAAATCCTGATCTTTTACCAAATATGTCTTTGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164918.3
ENSMUST00000232927.2