RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R51 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058685

Ensembl transcript IDs: ENSMUST00000094863.6, ENSMUST00000233179.2

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTaGGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTG +
Preference number: 1 (lower is better)
Translates to: CQAGQISQDTVECSI*ALVAHNDDVAMESV
Trigger: CACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCCTGCCTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR TCA 90 bp TGCAAACAAAACAGCAGGCTGCCATTCCCTCCTTCCATAATCTTCTaGATCCAGGACTACAATCTGCACTGCACACAGAGGATGGCATCT +
Preference number: 1 (lower is better)
Translates to: CKQNSRLPFPPSIIF*IQDYNLHCTQRMAS
Trigger: AGATGCCATCCTCTGTGTGCAGTGCAGATTGTAGTCCTGGATTCAGAAGATTATGGAAGGAGGGAATGGCAGCCTGCTGTTTTGTTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CCA 90 bp TACAATCTGCACTGCACACAGAGGATGGCATCTTTCTTCTTCCTGTaGCCAACTCAATCATGTCTTCGTATAAGTGAAAGTGTCGACCGT +
Preference number: 1 (lower is better)
Translates to: YNLHCTQRMASFFFL*PTQSCLRISESVDR
Trigger: ACGGTCGACACTTTCACTTATACGAAGACATGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCTCTGTGTGCAGTGCAGATTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CCA 90 bp AATGCAGTATCTGAGCCCTTGTTGCACACAATGATGATGTGGCCATaGAGAGTGTGTTCATCAATATCAACAAAGGGAGGAGAAACTGCT +
Preference number: 1 (lower is better)
Translates to: NAVSEPLLHTMMMWP*RVCSSISTKGGETA
Trigger: AGCAGTTTCTCCTCCCTTTGTTGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CCA 90 bp AGTAGGTCCTTCTTAGAAAGGAGTTTACCTTCAAGCAGTGAGAACTaGCTCTTTTTCCATTGTCTGTTGCCTGATTATCAGCCTGTTGCA +
Preference number: 1 (lower is better)
Translates to: SRSFLERSLPSSSEN*LFFHCLLPDYQPVA
Trigger: TGCAACAGGCTGATAATCAGGCAACAGACAATGGAAAAAGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAGGACCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR GCA 90 bp AGAACTGTGGAAACAGCTACAGTGAATACAATTCCAAATGTGATTTaGTGTAAGACACAGATGACTCTGTTTGGAAGGCCAATGAAGAAA +
Preference number: 1 (lower is better)
Translates to: RTVETATVNTIPNVI*CKTQMTLFGRPMKK
Trigger: TTTCTTCATTGGCCTTCCAAACAGAGTCATCTGTGTCTTACAGCAAATCACATTTGGAATTGTATTCACTGTAGCTGTTTCCACAGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR TCA 90 bp TTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTaGTCCATATTTGTCTCATTAGAAATTTCATTTTCAGGACAGGGG +
Preference number: 1 (lower is better)
Translates to: FCSVLAYWYSGQFTH*SIFVSLEISFSGQG
Trigger: CCCCTGTCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR TCA 90 bp CCTAACTTCATCTTAATCCCAAGGTGTTGTGAGAGATTCCCAAAGTaGACAATGTCATATTCATCCTGCATTATTACTCTTTGCTTCATA +
Preference number: 1 (lower is better)
Translates to: PNFILIPRCCERFPK*TMSYSSCIITLCFI
Trigger: TATGAAGCAAAGAGTAATAATGCAGGATGAATATGACATTGTTCACTTTGGGAATCTCTCACAACACCTTGGGATTAAGATGAAGTTAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp CCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTGAGCCCTTGTGGAGGGCATGGGCTATaGCATGCACAGCATTGTATA +
Preference number: 2 (lower is better)
Translates to: PGRPNIPGYSRMQYLSPCGGHGL*HAQHCI
Trigger: TATACAATGCTGTGCATGCCATAGCCCATGCCCTCC...ACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCCTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp CCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTGAGCCCTTGTAAGCCAGAACCACAATaGCTGTTTTGGCCAGAACTG +
Preference number: 2 (lower is better)
Translates to: PGRPNIPGYSRMQYLSPCKPEPQ*LFWPEL
Trigger: CAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTT...ACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCCTGCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp ACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACATTGGAGTAGGCCATTGTCTGTTGCCTaGTTATCAGCCTGTTGCAGA +
Preference number: 2 (lower is better)
Translates to: TKGGETASQIAHRTHWSRPLSVA*LSACCR
Trigger: TCTGCAACAGGCTGATAATCAGGCAACAGACAATGG...CCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp CCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTGAGCCCTTGTTTTACCTTCAAGCAGTaGGAACTGGCTCTTTTTCCA +
Preference number: 2 (lower is better)
Translates to: PGRPNIPGYSRMQYLSPCFTFKQ*ELALFP
Trigger: TGGAAAAAGAGCCAGTTCTCACTGCTTGAAGGTAAA...ACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCCTGCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp ACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACATTGGAGTAGGTCTTTCTTCTTCCTGTaGCCAACTCAATCATGTCTT +
Preference number: 2 (lower is better)
Translates to: TKGGETASQIAHRTHWSRSFFFL*PTQSCL
Trigger: AAGACATGATTGAGTTGGCCACAGGAAGAAGAAAGA...CCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp ACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACATTGGAGTAGGACAATAGGAGTGTCATaGTGCTTCACAAAGACACAA +
Preference number: 2 (lower is better)
Translates to: TKGGETASQIAHRTHWSRTIGVS*CFTKTQ
Trigger: TTGTGTCTTTGTGAAGCACCATGACACTCCTATTGT...CCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 90 bp CTTCCTGGGTCTGTGACTTTGAAAGCCAGAACCACAATGACTGTTTaGGCCAGAACTGTGGAAACAGCTACAGTGAATACAATTCCAAAT +
Preference number: 2 (lower is better)
Translates to: LPGSVTLKARTTMTV*ARTVETATVNTIPN
Trigger: ATTTGGAATTGTATTCACTGTAGCTGTTTCCACAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTTTCAAAGTCACAGACCCAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp CTCGTGGAGGGCATGGGCTATGGCATGCACAGCATTGTATATGTTATGACTACTTCCATTCTATTGTGGTaGTCCATATTCTCTGTAAAG +
Preference number: 2 (lower is better)
Translates to: LVEGMGYGMHSIVYVMTTSILLW*SIFSVK
Trigger: CTTTACAGAGAATATGGATCACCACAATAGAATGGA...AGTAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCACGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR GCA 90 bp CCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATATCAGCATGGGCTATGGCATaGACAGCATTGTATATGTTA +
Preference number: 2 (lower is better)
Translates to: PLLHTMMMWPWRVCSSISAWAMA*TALYML
Trigger: TAACATATACAATGCTGTGCATGCCATAGCCCATGC...TGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR GCA 90 bp GACACAGATGACTCTGTTTGGAAGGCCAATGAAGAAAAAGGAGCACAGAAAACATACCAGAGCTGTGAATaGAGAGAAACAGAAGGCCAT +
Preference number: 2 (lower is better)
Translates to: DTDDSVWKANEEKGAQKTYQSCE*RETEGH
Trigger: ATGGCCTTCTGTTTCTCTGCATTCACAGCTCTGGTA...TGTTTTCTGTGCTCCTTTTTCTTCATTGGCCTTCCAAACAGAGTCATCTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp CCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATATCATCAAGCAGTGAGAACTaGCTCTTTTTCCATTGTCTG +
Preference number: 2 (lower is better)
Translates to: PLLHTMMMWPWRVCSSISSSSEN*LFFHCL
Trigger: CAGACAATGGAAAAAGAGCCAGTTCTCACTGCTTGA...TGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp CCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATATCAGAAATCTCACCATGGTaGGGTAGAAAAGTAAGTGAT +
Preference number: 2 (lower is better)
Translates to: PLLHTMMMWPWRVCSSISEISPW*GRKVSD
Trigger: ATCACTTACTTTTCTACCCCACCATGGTGAGATTTC...TGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp GACACAGATGACTCTGTTTGGAAGGCCAATGAAGAAAAAGGAGCACAGAAAACAGTGGTAAATATGGGCTaGTCTTTCCTAACTTCATCT +
Preference number: 2 (lower is better)
Translates to: DTDDSVWKANEEKGAQKTVVNMG*SFLTSS
Trigger: AGATGAAGTTAGGAAAGATCAGCCCATATTTACCAC...TGTTTTCTGTGCTCCTTTTTCTTCATTGGCCTTCCAAACAGAGTCATCTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp CCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCAATATCATCTGTGTTTCTGACATaGAACCATGTCTGTACAAAA +
Preference number: 2 (lower is better)
Translates to: PLLHTMMMWPWRVCSSISSVFLT*NHVCTK
Trigger: TTTTGTACAGACATGGTTCCATGTCAGAAACACAGA...TGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp GAAACAGCTACAGTGAATACAATTCCAAATGTGATTTGCTGTAAGACACAGATGAAAGTACCAGAGCTGTaGATGCAGAGAAACAGAAGG +
Preference number: 2 (lower is better)
Translates to: ETATVNTIPNVICCKTQMKVPEL*MQRNRR
Trigger: CCTTCTGTTTCTCTGCATTCACAGCTCTGGTACTTT...CATCTGTGTCTTACAGCAAATCACATTTGGAATTGTATTCACTGTAGCTGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp TACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTTCCTTGATCGTCATCTaGAATGACAAGGCCAATCCA +
Preference number: 2 (lower is better)
Translates to: YICSVQCWHIGILDNSRISLIVI*NDKANP
Trigger: TGGATTGGCCTTGTCATTCCAGATGACGATCAAGGA...AATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp TTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTGATCAGAAATTGGTTTCCTTaGTCGTCATCTGGAATGACA +
Preference number: 2 (lower is better)
Translates to: FVLFSVGILVFWTIHALIRNWFP*SSSGMT
Trigger: TGTCATTCCAGATGACGATCAAGGAAACCAATTTCT...GATCAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 90 bp GTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATaGATCCATATTTGTCTCATTAGAAATTTCATTTTCAGGACAGGG +
Preference number: 2 (lower is better)
Translates to: VLFSVGILVFWTIHA*IHICLIRNFIFRTG
Trigger: CCCTGTCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 90 bp GGTGACACCTTTCTGAATACATTTGTTCTGTTCAGTGTTGGCATATaGGTATTCTGGACAATTCACGCATTGATCCATATTTGTCTCATT +
Preference number: 2 (lower is better)
Translates to: GDTFLNTFVLFSVGI*VFWTIHALIHICLI
Trigger: AATGAGACAAATATGGATCAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGTATTCAGAAAGGTGTCACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp TACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTGAGAGATTCCCAAAGTaGACAATGTCATATTCATCC +
Preference number: 2 (lower is better)
Translates to: YICSVQCWHIGILDNSRIERFPK*TMSYSS
Trigger: GGATGAATATGACATTGTTCACTTTGGGAATCTCTC...AATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CCA 90 bp GAAACAGCTACAGTGAATACAATTCCAAATGTGATTTGCTGTAAGACACAGATGGGCATATTGGTATTCTaGACAATTCACGCATTGATC +
Preference number: 2 (lower is better)
Translates to: ETATVNTIPNVICCKTQMGILVF*TIHALI
Trigger: GATCAATGCGTGAATTGTCCAGAATACCAATATGCC...CATCTGTGTCTTACAGCAAATCACATTTGGAATTGTATTCACTGTAGCTGTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp TACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTATAAATCTGTGTTTCTaGCATGGAACCATGTCTGTA +
Preference number: 2 (lower is better)
Translates to: YICSVQCWHIGILDNSRIINLCF*HGTMSV
Trigger: TACAGACATGGTTCCATGTCAGAAACACAGATTTAT...AATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR TCA 90 bp GAAACAGCTACAGTGAATACAATTCCAAATGTGATTTGCTGTAAGACACAGATGGCATTGTATATGTTATaGCTACTCTCACTAAAGGTC +
Preference number: 2 (lower is better)
Translates to: ETATVNTIPNVICCKTQMALYML*LLSLKV
Trigger: GACCTTTAGTGAGAGTAGTCATAACATATACAATGC...CATCTGTGTCTTACAGCAAATCACATTTGGAATTGTATTCACTGTAGCTGTTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR TCA 72 bp GGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTaGGCCCTTGTTGCACACAATGATGATGTGGCCATG +
Preference number: 3 (lower is better)
Translates to: GQISQDTVECSI*ALVAHNDDVAM
Trigger: CATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CCA 72 bp CCTGTTGCAGATTCATCTCGTGGAGGGCATGGGCTATaGCATGCACAGCATTGTATATGTTATGACTACTCT +
Preference number: 3 (lower is better)
Translates to: PVADSSRGGHGL*HAQHCICYDYS
Trigger: AGAGTAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCACGAGATGAATCTGCAACAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR GCA 72 bp CTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTaGTTCACAAAGACACAAAGTACCAGAGCTGTGAAT +
Preference number: 3 (lower is better)
Translates to: LLLLAFTIGVSW*FTKTQSTRAVN
Trigger: ATTCACAGCTCTGGTACTTTGTGTCTTTGTGAAGCACCATGACACTCCTATTGTGAAGGCCAATAACAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CAA 90 bp ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACATTGGGAGGCATCAGATGAATaGTTCTTCAGTATTTTACAG +
Preference number: 3 (lower is better)
Translates to: ISTKGGETASQIAHRTHWEASDE*FFSILQ
Trigger: CTGTAAAATACTGAAGAACAATTCATCTGATGCCTC...CCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGTTGATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CAA 90 bp ACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTGTGCTTCATAAACACTTaGTCCCCAAGAGGATTAGTG +
Preference number: 3 (lower is better)
Translates to: TFVLFSVGILVFWTIHALCFINT*SPRGLV
Trigger: CACTAATCCTCTTGGGGACAAAGTGTTTATGAAGCA...CAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR TCA 72 bp CTCTGTTTCTTCAACTCTAAAAGAAATTGGTTTCCTTaGTCGTCATCTGGAATGACAAGGCCAATCCAGTTC +
Preference number: 3 (lower is better)
Translates to: LCFFNSKRNWFP*SSSGMTRPIQF
Trigger: GAACTGGATTGGCCTTGTCATTCCAGATGACGATCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CAA 90 bp TTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCACGCATTGATCTGTAGTACATTTCAGTaGTATGTGGAAGTGAAACGT +
Preference number: 3 (lower is better)
Translates to: FVLFSVGILVFWTIHALICSTFQ*YVEVKR
Trigger: ACGTTTCACTTCCACATACAACTGAAATGTACTACA...GATCAATGCGTGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR-3UTR CAA 90 bp GAAACAGCTACAGTGAATACAATTCCAAATGTGATTTGCTGTAAGACACAGATGTTGTTCTGTTCAGTGTaGGCATATTGGTATTCTGGA +
Preference number: 3 (lower is better)
Translates to: ETATVNTIPNVICCKTQMLFCSV*AYWYSG
Trigger: TCCAGAATACCAATATGCCAACACTGAACAGAACAA...CATCTGTGTCTTACAGCAAATCACATTTGGAATTGTATTCACTGTAGCTGTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 72 bp AGGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTaGAAAGCCAGAACCACAATGACTGTTTTGGCCAGA +
Preference number: 4 (lower is better)
Translates to: RKYLNLLPGSVT*KARTTMTVLAR
Trigger: TCTGGCCAAAACAGTCATTGTGGTTCTGGCTTTCAAAGTCACAGACCCAGGAAGAAGATTGAGATACTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 72 bp CAATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATaGCACACAGAACACATTGGAGTAGGGAACATATGG +
Preference number: 4 (lower is better)
Translates to: QYQQREEKLLAR*HTEHIGVGNIW
Trigger: CCATATGTTCCCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGTTGATATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 72 bp TCTGTGACTTTGAAAGCCAGAACCACAATGACTGTTTaGGCCAGAACTGTGGAAACAGCTACAGTGAATACA +
Preference number: 4 (lower is better)
Translates to: SVTLKARTTMTV*ARTVETATVNT
Trigger: TGTATTCACTGTAGCTGTTTCCACAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTTTCAAAGTCACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
CDS-3UTR CCA 90 bp GGGAAATTCCATTCTATTGTGGTGATCCATATTCTCTGTAAAGTGGGAGGGTCCAAGACACCTCCCAATTaGATTAGAACATTAAGAGTC +
Preference number: 4 (lower is better)
Translates to: GKFHSIVVIHILCKVGGSKTPPN*IRTLRV
Trigger: GACTCTTAATGTTCTAATCCAATTGGGAGGTGTCTT...GGACCCTCCCACTTTACAGAGAATATGGATCACCACAATAGAATGGAATTTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 72 bp TTAATGACATCACAATTTGGCTGTAGTACATTTCAGTaGTATGTGGAAGTGAAACGTCATCAACAGAGATCA +
Preference number: 4 (lower is better)
Translates to: LMTSQFGCSTFQ*YVEVKRHQQRS
Trigger: TGATCTCTGTTGATGACGTTTCACTTCCACATACAACTGAAATGTACTACAGCCAAATTGTGATGTCATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
3UTR CAA 72 bp GTGAACAATGTCATATTCATCCTGCATTATTACTCTTaGCTTCATAAACACTTTGTCCCCAAGAGGATTAGT +
Preference number: 4 (lower is better)
Translates to: VNNVIFILHYYS*LHKHFVPKRIS
Trigger: ACTAATCCTCTTGGGGACAAAGTGTTTATGAAGCAAAGAGTAATAATGCAGGATGAATATGACATTGTTCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
CDS-3UTR CAA 90 bp ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACATTGGCTGGGATCAATGAAATaGGCCATGAGAAGTGTAATA +
Preference number: 5 (lower is better)
Translates to: ISTKGGETASQIAHRTHWLGSMK*AMRSVI
Trigger: TATTACACTTCTCATGGCCAATTTCATTGATCCCAG...CCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGTTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233179.2
CDS TCA 72 bp AATCTTTTTCAATGGGTGTCTGAACAGCTGCCAGGATaGAAGCACAAGATAATCCCAAATATTCATCCGTTG +
Preference number: 6 (lower is better)
Translates to: NLFQWVSEQLPG*KHKIIPNIHPL
Trigger: CAACGGATGAATATTTGGGATTATCTTGTGCTTTCATCCTGGCAGCTGTTCAGACACCCATTGAAAAAGATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094863.6
ENSMUST00000233179.2
CDS CAA 72 bp AAATTTATTCTCCAAAAGCACCTGGGATCAATGAAATaGGCCATGAGAAGTGTAATATTAAGGAGTAAGAAG +
Preference number: 6 (lower is better)
Translates to: KFILQKHLGSMK*AMRSVILRSKK
Trigger: CTTCTTACTCCTTAATATTACACTTCTCATGGCCAATTTCATTGATCCCAGGTGCTTTTGGAGAATAAATTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094863.6
ENSMUST00000233179.2