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Pregenerated sensors for VMN2R49 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096180

Ensembl transcript IDs: ENSMUST00000108550.4

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TCATGGAGGGCATGGGCTATGGCATGCACAGCATTATATATGTTATaGCTATTATCACTAAAGGCCATGTCAAGCTTCTCTTCCATTAGC +
Preference number: 5 (lower is better)
Translates to: SWRAWAMACTALYML*LLSLKAMSSFSSIS
Trigger: GCTAATGGAAGAGAAGCTTGACATGGCCTTTAGTGATAATAGTCATAACATATATAATGCTGTGCATGCCATAGCCCATGCCCTCCATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS TCA 90 bp CCTAACTTCATCTTAATCCCAAGGTGTTCTGAGAGATTCGCAAAGTaGACAATGTCATATTCATCCTGCATTATTACTCTTTGCTTCATA +
Preference number: 5 (lower is better)
Translates to: PNFILIPRCSERFAK*TMSYSSCIITLCFI
Trigger: TATGAAGCAAAGAGTAATAATGCAGGATGAATATGACATTGTTCACTTTGCGAATCTCTCAGAACACCTTGGGATTAAGATGAAGTTAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS CAA 72 bp TCCTTTTCCATTATCTATTGCCTGATTATCAGCCTGTaGCAGATTCATCTCATGGAGGGCATGGGCTATGGC +
Preference number: 6 (lower is better)
Translates to: SFSIIYCLIISL*QIHLMEGMGYG
Trigger: GCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACAGGCTGATAATCAGGCAATAGATAATGGAAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS GCA 72 bp CAAGCAGTGAGAACTGGCTCCTTTTCCATTATCTATTaGCTGATTATCAGCCTGTTGCAGATTCATCTCATG +
Preference number: 6 (lower is better)
Translates to: QAVRTGSFSIIY*LIISLLQIHLM
Trigger: CATGAGATGAATCTGCAACAGGCTGATAATCAGGCAATAGATAATGGAAAAGGAGCCAGTTCTCACTGCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS CCA 72 bp CCTGTTGCAGATTCATCTCATGGAGGGCATGGGCTATaGCATGCACAGCATTATATATGTTATGACTATTAT +
Preference number: 6 (lower is better)
Translates to: PVADSSHGGHGL*HAQHYICYDYY
Trigger: ATAATAGTCATAACATATATAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS CAA 72 bp TCTGTGACTTTGAAAGCTAGAACCACAGTGACTGTTTaGGCCAGAACTGTGGAAACAGCTACAGTAAATACA +
Preference number: 6 (lower is better)
Translates to: SVTLKARTTVTV*ARTVETATVNT
Trigger: TGTATTTACTGTAGCTGTTTCCACAGTTCTGGCCAAAACAGTCACTGTGGTTCTAGCTTTCAAAGTCACAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS TCA 72 bp CTCTGTTTCTTCAACTCTAAAAGAAATTGGTTTCCTTaGTCGTCATCTGGGATGACAAGGCCAATCCAATTC +
Preference number: 6 (lower is better)
Translates to: LCFFNSKRNWFP*SSSGMTRPIQF
Trigger: GAATTGGATTGGCCTTGTCATCCCAGATGACGATCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS TCA 72 bp GCATGGGCTATGGCATGCACAGCATTATATATGTTATaGCTATTATCACTAAAGGCCATGTCAAGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: AWAMACTALYML*LLSLKAMSSFS
Trigger: AGAGAAGCTTGACATGGCCTTTAGTGATAATAGTCATAACATATATAATGCTGTGCATGCCATAGCCCATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS TCA 72 bp AATCTTTTTCAATGGGTGTCTGAACAGCTGCCAGGATaGAAGCACAAGATAATTCCAAATATTCATCCGTTA +
Preference number: 6 (lower is better)
Translates to: NLFQWVSEQLPG*KHKIIPNIHPL
Trigger: TAACGGATGAATATTTGGAATTATCTTGTGCTTTCATCCTGGCAGCTGTTCAGACACCCATTGAAAAAGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS CAA 90 bp ATTTCATCCAAATTTATTCTCCAAAAGCACCTGGAATCAATGAAATaGGCCATGAGAAGTGTAATATTAAGGAGGAAGAAGACTCCCATG +
Preference number: 6 (lower is better)
Translates to: ISSKFILQKHLESMK*AMRSVILRRKKTPM
Trigger: CATGGGAGTCTTCTTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTGATTCCAGGTGCTTTTGGAGAATAAATTTGGATGAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS TCA 72 bp ATCTTAATCCCAAGGTGTTCTGAGAGATTCGCAAAGTaGACAATGTCATATTCATCCTGCATTATTACTCTT +
Preference number: 6 (lower is better)
Translates to: ILIPRCSERFAK*TMSYSSCIITL
Trigger: AAGAGTAATAATGCAGGATGAATATGACATTGTTCACTTTGCGAATCTCTCAGAACACCTTGGGATTAAGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4
CDS CAA 72 bp AAATTTATTCTCCAAAAGCACCTGGAATCAATGAAATaGGCCATGAGAAGTGTAATATTAAGGAGGAAGAAG +
Preference number: 6 (lower is better)
Translates to: KFILQKHLESMK*AMRSVILRRKK
Trigger: CTTCTTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTGATTCCAGGTGCTTTTGGAGAATAAATTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108550.4