Pregenerated sensors for VMN2R44 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094098Ensembl transcript IDs: ENSMUST00000166499.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGATCTTGCTTGTCCGGGTTTGTTGAGACTGCTGGTGTTTCTATaGGTTGTCCTCCTCCTCTGCTTCTTGCAACTATTCCCAATTCAT | + |
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Preference number: 1 (lower is better) Translates to: RDLACPGLLRLLVFL*VVLLLCFLQLFPIH Trigger: ATGAATTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACCAGCAGTCTCAACAAACCCGGACAAGCAAGATCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR TCA 90 bp | GAACATCTCCTCCTTAGACTATTGGCCAATAGCTTGAAGAACAGCTaGAAAAATAGGCAGTATTTTGTTATGTGTGTGTGCCTACTGGAA | + |
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Preference number: 1 (lower is better) Translates to: EHLLLRLLANSLKNS*KNRQYFVMCVCLLE Trigger: TTCCAGTAGGCACACACACATAACAAAATACTGCCTATTTTTTCAGCTGTTCTTCAAGCTATTGGCCAATAGTCTAAGGAGGAGATGTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR-3UTR CCA 90 bp | TCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACCTGCTGGTGTTTCTATaGGTTGTCCTCCTCCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: SHSVFQNFLSPGPHSELHLLVFL*VVLLLC Trigger: GCAGAGGAGGAGGACAACCCATAGAAACACCAGCAG...GTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR-3UTR GCA 90 bp | TCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACTCCTCCTCTGCTTCTTaGAACTATTCCCAATTCATC | + |
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Preference number: 2 (lower is better) Translates to: SHSVFQNFLSPGPHSELHSSSAS*NYSQFI Trigger: GATGAATTGGGAATAGTTGCAAGAAGCAGAGGAGGA...GTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR-3UTR CCA 90 bp | TCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACTTTTGGAAGTTAACATaGGGAAATCTCCATGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: SHSVFQNFLSPGPHSELHFWKLT*GNLHES Trigger: GCTTTCATGGAGATTTCCCCATGTTAACTTCCAAAA...GTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR GCA 72 bp | TGGTGTTTCTATGGGTTGTCCTCCTCCTCTGCTTCTTaGAACTATTCCCAATTCATCCACAGGGGCCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: WCFYGLSSSSAS*NYSQFIHRGPW Trigger: CCAGGGGCCCCTGTGGATGAATTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR TCA 72 bp | CTTCCTCATCTAACATCTCCTCCCACATTTCCAAGATaGTATCCCTACATCCCCTACGCCCAGCCCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: LPHLTSPPTFPR*YPYIPYAQPFP Trigger: TGGGAAGGGCTGGGCGTAGGGGATGTAGGGATATCATCTTGGAAATGTGGGAGGAGATGTTAGATGAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR-3UTR CAA 90 bp | CTCCTCTGCTTCTTGCAACTATTCCCAATTCATCCACAGGGGCCCCTGGCTGATCTCCTCCTTAGACTATaGGCCAATAGCTTGAAGAAC | + |
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Preference number: 3 (lower is better) Translates to: LLCFLQLFPIHPQGPLADLLLRL*ANSLKN Trigger: GTTCTTCAAGCTATTGGCCAATAGTCTAAGGAGGAG...ATCAGCCAGGGGCCCCTGTGGATGAATTGGGAATAGTTGCAAGAAGCAGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR GCA 72 bp | AGACTGCTGGTGTTTCTATGGGTTGTCCTCCTCCTCTaGTTCTTGCAACTATTCCCAATTCATCCACAGGGG | + |
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Preference number: 3 (lower is better) Translates to: RLLVFLWVVLLL*FLQLFPIHPQG Trigger: CCCCTGTGGATGAATTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACCAGCAGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR CCA 72 bp | GCTTGTCCGGGTTTGTTGAGACTGCTGGTGTTTCTATaGGTTGTCCTCCTCCTCTGCTTCTTGCAACTATTC | + |
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Preference number: 3 (lower is better) Translates to: ACPGLLRLLVFL*VVLLLCFLQLF Trigger: GAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACCAGCAGTCTCAACAAACCCGGACAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR TCA 72 bp | AAGCATCTGCCTCTCATTCTGTTTTCCAGAATTTTCTaGGTCCAGGACCTCACTCAGAACTGCACACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: KHLPLILFSRIF*VQDLTQNCTQR Trigger: CCTCTGTGTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGAGGCAGATGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR CCA 72 bp | TCTTGCAACTATTCCCAATTCATCCACAGGGGCCCCTaGCTGATGTCCAGTGTTGGATATAATATATTTGTA | + |
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Preference number: 3 (lower is better) Translates to: SCNYSQFIHRGP*LMSSVGYNIFV Trigger: TACAAATATATTATATCCAACACTGGACATCAGCCAGGGGCCCCTGTGGATGAATTGGGAATAGTTGCAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR GCA 90 bp | CTCCTCTGCTTCTTGCAACTATTCCCAATTCATCCACAGGGGCCCCTGGCTGATAACAAAACAGCAGGCTaGCATTCCATCCTTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: LLCFLQLFPIHPQGPLADNKTAG*HSILPQ Trigger: TTGTGGAAGGATGGAATGGCAGCCTGCTGTTTTGTT...ATCAGCCAGGGGCCCCTGTGGATGAATTGGGAATAGTTGCAAGAAGCAGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR TCA 90 bp | TACGCCCAGCCCTTCCCAATCCCTGGGAATTTAAGTCTCTCTGGGGTTAGGTGTGATCAGGATTCCTGTTaGTTTCATCCATTGCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: YAQPFPIPGNLSLSGVRCDQDSC*FHPLQR Trigger: CCTTTGCAATGGATGAAATCAACAGGAATCCTGATC...ACACCTAACCCCAGAGAGACTTAAATTCCCAGGGATTGGGAAGGGCTGGGCGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR TCA 90 bp | TTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACACAGAGGGAAATCCAAGAAAGCCAAAGTaGAGCTTCCAAGTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: FQNFLSPGPHSELHTEGNPRKPK*SFQVPG Trigger: GCCTGGCACTTGGAAGCTTCACTTTGGCTTTCTTGG...ATTTCCCTCTGTGTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR CCA 90 bp | TACGCCCAGCCCTTCCCAATCCCTGGGAATTTAAGTCTCTCTGGGGTTAGGTGTTCTTTGCTTTTGAGATaGAACCATGTCTGTACAAAA | + |
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Preference number: 4 (lower is better) Translates to: YAQPFPIPGNLSLSGVRCSLLLR*NHVCTK Trigger: TTTTGTACAGACATGGTTCCATCTCAAAAGCAAAGA...ACACCTAACCCCAGAGAGACTTAAATTCCCAGGGATTGGGAAGGGCTGGGCGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR CCA 90 bp | TTGTTGAGACTGCTGGTGTTTCTATGGGTTGTCCTCCTCCTCTGCTTCTTGCAAGCACACAGAACACATTaGAATAGGGAACATATGGGA | + |
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Preference number: 4 (lower is better) Translates to: LLRLLVFLWVVLLLCFLQAHRTH*NREHMG Trigger: TCCCATATGTTCCCTATTCCAATGTGTTCTGTGTGC...TTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACACCAGCAGTCTCAACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR TCA 90 bp | TTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACACAGAGGGAAATCCATTGTCTATTGCCTaGTTATCAACCTGCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: FQNFLSPGPHSELHTEGNPLSIA*LSTCCK Trigger: TTTGCAGCAGGTTGATAATCAGGCAATAGACAATGG...ATTTCCCTCTGTGTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR GCA 90 bp | TCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCACTCAGAACTGCACGTGATCCATAGAAAGTaGCATGAGTTATGTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SHSVFQNFLSPGPHSELHVIHRK*HELCLS Trigger: AGAGAGACATAACTCATGGCACTTTCTATGGATCAC...GTGCAGTTCTGAGTGAGGTCCTGGACTCAGAAAATTCTGGAAAACAGAATGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| 3UTR CAA 72 bp | AGTCTAAAACTAGACACATTCACTATAACCCAATATTaGGTGGGTATGTACCAACTTTACATTGGACACAAT | + |
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Preference number: 4 (lower is better) Translates to: SLKLDTFTITQY*VGMYQLYIGHN Trigger: ATTGTGTCCAATGTAAAGTTGGTACATACCCACCAAATATTGGGTTATAGTGAATGTGTCTAGTTTTAGACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS TCA 90 bp | GCAGTAACTGAGCCCTTGTTGCACACAATGATGATGTGGCCATGCTaGGAGTGTTCATCAATATCAACAAAGGGAGGAGAAACTTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: AVTEPLLHTMMMWPC*ECSSISTKGGETSS Trigger: GCTAGAAGTTTCTCCTCCCTTTGTTGATATTGATGAACACTCTCAGCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS TCA 90 bp | TCATGGAGTGCATGGGCTATGGCATGCACAGCATTGTATATGTTATaGCTACTCTCACTAAAGGCCATGTCAAACTTCTGTTCCATTAGC | + |
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Preference number: 5 (lower is better) Translates to: SWSAWAMACTALYML*LLSLKAMSNFCSIS Trigger: GCTAATGGAACAGAAGTTTGACATGGCCTTTAGTGAGAGTAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCACTCCATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS-3UTR CAA 90 bp | CACAGAAGTTCAGTAGATATGATACTTCATGACATCACTAGAGCAACCAGTGAGCTGGGATCAATAAAATaGGCCATAAAAAGTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: HRSSVDMILHDITRATSELGSIK*AIKSGM Trigger: CATTCCACTTTTTATGGCCAATTTTATTGATCCCAG...CTCACTGGTTGCTCTAGTGATGTCATGAAGTATCATATCTACTGAACTTCTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS CCA 90 bp | TATTTCCACTCTGGCATTACTAGATATAAATCTTTGCTTTTGAGATaGAACCATGTCTGTACAAAATCTTTAAAGCCAGAAATCCCACCA | + |
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Preference number: 5 (lower is better) Translates to: YFHSGITRYKSLLLR*NHVCTKSLKPEIPP Trigger: TGGTGGGATTTCTGGCTTTAAAGATTTTGTACAGACATGGTTCCATCTCAAAAGCAAAGATTTATATCTAGTAATGCCAGAGTGGAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS TCA 72 bp | AACAGCAGGCTGCCATTCCATCCTTCCACAATCTTCTaGATCCAGGACTACATTCCGCACTGCACACAGAGG | + |
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Preference number: 6 (lower is better) Translates to: NSRLPFHPSTIF*IQDYIPHCTQR Trigger: CCTCTGTGTGCAGTGCGGAATGTAGTCCTGGATTCAGAAGATTGTGGAAGGATGGAATGGCAGCCTGCTGTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS TCA 72 bp | ATGCGTCAGGCAGATTCTTGGCCAAGAAAGCCAAAGTaGAGCTTCCAAGTGCCAGGCAGGCCAAGTATCCAA | + |
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Preference number: 6 (lower is better) Translates to: MRQADSWPRKPK*SFQVPGRPSIQ Trigger: TTGGATACTTGGCCTGCCTGGCACTTGGAAGCTTCACTTTGGCTTTCTTGGCCAAGAATCTGCCTGACGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS CCA 72 bp | GAATCCAGGACTACATTCCGCACTGCACACAGAGGATaGCATCTTTCTACTTCCTGTGGCAACCTCAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: ESRTTFRTAHRG*HLSTSCGNLKH Trigger: ATGCTTGAGGTTGCCACAGGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCGGAATGTAGTCCTGGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS CCA 72 bp | CCTGCTGCAAATTCATCTCATGGAGTGCATGGGCTATaGCATGCACAGCATTGTATATGTTATGACTACTCT | + |
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Preference number: 6 (lower is better) Translates to: PAANSSHGVHGL*HAQHCICYDYS Trigger: AGAGTAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCACTCCATGAGATGAATTTGCAGCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS TCA 72 bp | CATGATGCTTCACAAATACACAAAGTACCACAGCTGTaGATGCAGAGAAACAGAAGGCCATTAAGGCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: HDASQIHKVPQL*MQRNRRPLRQV Trigger: CACTTGCCTTAATGGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTTGTGTATTTGTGAAGCATCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS GCA 72 bp | CTGATTATCAACCTGCTGCAAATTCATCTCATGGAGTaGATGGGCTATGGCATGCACAGCATTGTATATGTT | + |
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Preference number: 6 (lower is better) Translates to: LIINLLQIHLME*MGYGMHSIVYV Trigger: AACATATACAATGCTGTGCATGCCATAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAATCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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| CDS CCA 72 bp | TTCATAATCACTTTGTCCCCAAGAGGATTAGTGAAGTaGATCTTTCTTAGAAAGGAGTTTACCTTCAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: FIITLSPRGLVK*IFLRKEFTFKQ Trigger: CTGCTTGAAGGTAAACTCCTTTCTAAGAAAGATCCACTTCACTAATCCTCTTGGGGACAAAGTGATTATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166499.4 |
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